AlfalfaGEDB | Msa0140860

M. sativa cultivar zhongmu-4 / Msa0140860

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140860	XP_003600927.2	99.237	262	2	0	1	262	1	262	0.0	535

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140860	sp\|Q9XEF0\|BH051_ARATH	43.885	278	109	10	3	261	1	250	2.56e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140860	G7JBT8	99.237	262	2	0	1	262	1	262	0.0	535

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TFs/TRs:

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Gene ID	Type	Classification
Msa0140860	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0140860	-0.842366	2.701897e-58	-8.615850e-47
Msa0006110	Msa0140860	0.810683	1.020412e-50	-8.615850e-47
Msa0011170	Msa0140860	0.809149	2.182267e-50	-8.615850e-47
Msa0012060	Msa0140860	0.812253	4.653128e-51	-8.615850e-47
Msa0014570	Msa0140860	0.812612	3.884594e-51	-8.615850e-47
Msa0014710	Msa0140860	0.839353	1.667468e-57	-8.615850e-47
Msa0015120	Msa0140860	0.826598	2.485177e-54	-8.615850e-47
Msa0017510	Msa0140860	0.834844	2.369817e-56	-8.615850e-47
Msa0020930	Msa0140860	0.829674	4.511660e-55	-8.615850e-47
Msa0028550	Msa0140860	0.801793	7.614033e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140860	MtrunA17_Chr3g0113721	85.878	262	3	1	1	262	1	228	1.48e-159	442
Msa0140860	MtrunA17_Chr1g0198801	45.503	189	94	3	66	254	151	330	2.47e-43	150
Msa0140860	MtrunA17_Chr7g0255961	34.661	251	140	6	7	254	13	242	5.51e-41	141
Msa0140860	MtrunA17_Chr4g0041051	35.533	197	106	4	65	254	60	242	3.85e-24	97.4
Msa0140860	MtrunA17_Chr5g0412371	37.059	170	84	4	73	236	45	197	4.14e-24	96.3
Msa0140860	MtrunA17_Chr2g0325521	33.880	183	104	4	63	238	49	221	7.46e-23	94.0
Msa0140860	MtrunA17_Chr4g0045901	33.166	199	113	6	67	255	69	257	9.51e-23	94.4
Msa0140860	MtrunA17_Chr5g0427361	29.596	223	107	5	51	234	7	218	1.83e-16	76.6
Msa0140860	MtrunA17_Chr2g0283714	43.182	88	37	2	105	192	16	90	1.83e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140860	AT2G40200.1	43.885	278	109	10	3	261	1	250	2.60e-54	176
Msa0140860	AT1G68810.1	41.538	195	98	4	66	255	167	350	5.47e-36	132
Msa0140860	AT3G25710.1	46.405	153	70	2	69	220	128	269	7.60e-34	125
Msa0140860	AT3G56770.1	36.216	185	106	4	61	243	33	207	1.61e-33	122
Msa0140860	AT2G41130.1	34.426	183	107	4	63	242	57	229	7.12e-25	99.8
Msa0140860	AT4G38070.1	33.108	148	82	3	73	220	92	222	1.64e-18	82.8

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Find 51 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGACATAGCAAGTGT+TGG	0.610561	1_3:-75396505	Msa0140860:CDS
AAAGTGGGAAATTGAAAGCT+AGG	0.456327	1_3:-75396106	Msa0140860:three_prime_UTR
AATATAGTGAATTTCAGTCA+TGG	0.537343	1_3:-75397821	Msa0140860:CDS
AATATCTCTGACTCTTCTTC+TGG	0.300411	1_3:-75397852	Msa0140860:CDS
AATTACTATACAAAATGAGA+AGG	0.613826	1_3:+75396319	None:intergenic
ACTACAATGATTCTTCTGAG+TGG	0.704840	1_3:-75397959	Msa0140860:CDS
ACTTATTCCTAAGTCTGATA+AGG	0.480745	1_3:-75397682	Msa0140860:intron
AGAAAGCATTGAAGAAAGTT+TGG	0.275581	1_3:-75398028	Msa0140860:five_prime_UTR
AGATATATAGTTTGTCCATT+AGG	0.297236	1_3:-75396177	Msa0140860:three_prime_UTR
AGATCTAAAACGAAAAGCAA+TGG	0.577531	1_3:-75396734	Msa0140860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTCAATGCTTTCTTTATG+AGG	+	chr1_3:75396105-75396124	None:intergenic	30.0%
TCATGGAATTTACCTATTGA+AGG	-	chr1_3:75396334-75396353	Msa0140860:CDS	30.0%
CATGGAATTTACCTATTGAA+GGG	-	chr1_3:75396335-75396354	Msa0140860:CDS	30.0%
ACTTATTCCTAAGTCTGATA+AGG	-	chr1_3:75396456-75396475	Msa0140860:CDS	30.0%
GAAAATGGAATTACCTACTT+AGG	-	chr1_3:75396592-75396611	Msa0140860:CDS	30.0%
AATGCAACATCTTATCACTT+GGG	+	chr1_3:75396623-75396642	None:intergenic	30.0%
ATGTTGCATTCATTCAATTC+AGG	-	chr1_3:75396633-75396652	Msa0140860:CDS	30.0%
AGTCTTGAGTATGAACAATT+TGG	-	chr1_3:75396790-75396809	Msa0140860:intron	30.0%
TTATTGTGTGTTTGGATTGA+TGG	-	chr1_3:75396823-75396842	Msa0140860:intron	30.0%
TTTGGATTGAGTAAAATTGC+CGG	+	chr1_3:75396927-75396946	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	75395996	75398164	75395996	ID=Msa0140860;Name=Msa0140860
chr1_3	mRNA	75395996	75398164	75395996	ID=Msa0140860-mRNA-1;Parent=Msa0140860;Name=Msa0140860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170\|1\|1\|1\|1\|1\|2\|328\|262
chr1_3	exon	75395996	75396800	75395996	ID=Msa0140860-mRNA-1:exon:26307;Parent=Msa0140860-mRNA-1
chr1_3	exon	75397683	75398164	75397683	ID=Msa0140860-mRNA-1:exon:26306;Parent=Msa0140860-mRNA-1
chr1_3	five_prime_UTR	75397995	75398164	75397995	ID=Msa0140860-mRNA-1:five_prime_utr;Parent=Msa0140860-mRNA-1
chr1_3	CDS	75397683	75397994	75397683	ID=Msa0140860-mRNA-1:cds;Parent=Msa0140860-mRNA-1
chr1_3	CDS	75396324	75396800	75396324	ID=Msa0140860-mRNA-1:cds;Parent=Msa0140860-mRNA-1
chr1_3	three_prime_UTR	75395996	75396323	75395996	ID=Msa0140860-mRNA-1:three_prime_utr;Parent=Msa0140860-mRNA-1

Gene Sequence

>Msa0140860

ATGAGTATGGAAAACTACAATGATTCTTCTGAGTGGCAGCATTTGAGCACAAACTGGTCTCAATACAGTAATGATCATTCACAATTTCCTGTGACTGTACCTACACAGATACTACCTCATAATATCTCTGACTCTTCTTCTGGTTCTTTTCAATATAGTGAATTTCAGTCATGGAATTTACCTATTGAAGGGAGTGTTGAAGATAGAGCAGCAAGTGCTTCCAAGAGTCATAGTCAAGCAGAGAAAAGACGTAGAGACAGGATTAATACACAGCTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGATAGATCAAGTCAAAGATCTAAAACGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTATAACCATGTTGTTGAAGATGAAACCAACACTAACAAAGTGAACAAATTCAAAGACAACATCATCATCAAAGCTTCTGTTTGTTGCGATGATCGACCGGAATTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGCAGAATCAAAAGTATATTAGTGCTTTGTTCTAAGGACAGTGAAGAAAATGTTTGCATTAATACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCAACATCAATGGTATCTAATTGTCCTACAAGAAGTAAGAGGCAGAGATTCTTTTTGCCTTCTCATTTTGTATAG

Protein sequence

>Msa0140860

MSMENYNDSSEWQHLSTNWSQYSNDHSQFPVTVPTQILPHNISDSSSGSFQYSEFQSWNLPIEGSVEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVVEDETNTNKVNKFKDNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASTSMVSNCPTRSKRQRFFLPSHFV*