AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140860 MtrunA17_Chr3g0113721 85.878 262 3 1 1 262 1 228 1.48e-159 442
Msa0140860 MtrunA17_Chr1g0198801 45.503 189 94 3 66 254 151 330 2.47e-43 150
Msa0140860 MtrunA17_Chr7g0255961 34.661 251 140 6 7 254 13 242 5.51e-41 141
Msa0140860 MtrunA17_Chr4g0041051 35.533 197 106 4 65 254 60 242 3.85e-24 97.4
Msa0140860 MtrunA17_Chr5g0412371 37.059 170 84 4 73 236 45 197 4.14e-24 96.3
Msa0140860 MtrunA17_Chr2g0325521 33.880 183 104 4 63 238 49 221 7.46e-23 94.0
Msa0140860 MtrunA17_Chr4g0045901 33.166 199 113 6 67 255 69 257 9.51e-23 94.4
Msa0140860 MtrunA17_Chr5g0427361 29.596 223 107 5 51 234 7 218 1.83e-16 76.6
Msa0140860 MtrunA17_Chr2g0283714 43.182 88 37 2 105 192 16 90 1.83e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140860 AT2G40200.1 43.885 278 109 10 3 261 1 250 2.60e-54 176
Msa0140860 AT1G68810.1 41.538 195 98 4 66 255 167 350 5.47e-36 132
Msa0140860 AT3G25710.1 46.405 153 70 2 69 220 128 269 7.60e-34 125
Msa0140860 AT3G56770.1 36.216 185 106 4 61 243 33 207 1.61e-33 122
Msa0140860 AT2G41130.1 34.426 183 107 4 63 242 57 229 7.12e-25 99.8
Msa0140860 AT4G38070.1 33.108 148 82 3 73 220 92 222 1.64e-18 82.8

Find 51 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGATGTTGAAGCAATTT+TGG 0.180765 1_3:+75396387 None:intergenic
TATATTAGTGCTTTGTTCTA+AGG 0.204855 1_3:-75396467 Msa0140860:CDS
AGAAAGCATTGAAGAAAGTT+TGG 0.275581 1_3:-75398028 Msa0140860:five_prime_UTR
ATTTCCCATTTGGATGAGTA+TGG 0.281846 1_3:-75397985 Msa0140860:exon
GTCTTAAACCTTTGAGGACT+TGG 0.282951 1_3:+75396539 None:intergenic
AGATATATAGTTTGTCCATT+AGG 0.297236 1_3:-75396177 Msa0140860:three_prime_UTR
CTTCTTATCTTGATGGTGAT+TGG 0.298433 1_3:+75398124 None:intergenic
AATATCTCTGACTCTTCTTC+TGG 0.300411 1_3:-75397852 Msa0140860:CDS
TGACCTTCTTCTTATCTTGA+TGG 0.323591 1_3:+75398117 None:intergenic
GATATATAGTTTGTCCATTA+GGG 0.324263 1_3:-75396176 Msa0140860:three_prime_UTR
TTTGGTCACTGCTGATTTAA+GGG 0.341399 1_3:+75396405 None:intergenic
TCAATCTTTCATCTCCCTAA+TGG 0.348491 1_3:+75396162 None:intergenic
TCTTCAATGCTTTCTTTATG+AGG 0.371665 1_3:+75398036 None:intergenic
GTATTGTATTATTTCCCATT+TGG 0.380284 1_3:-75397995 Msa0140860:five_prime_UTR
TTGTAAGTCTTAAACCTTTG+AGG 0.389696 1_3:+75396533 None:intergenic
CTCTGCTTGACTATGACTCT+TGG 0.398647 1_3:+75397752 None:intergenic
CTCTGCCTCTTACTTCTTGT+AGG 0.400975 1_3:+75396352 None:intergenic
ATTAGTTCAGAGAACAATTC+CGG 0.405030 1_3:+75396562 None:intergenic
ATGGACAAAGCAGCATTACT+AGG 0.419485 1_3:-75396778 Msa0140860:CDS
ATGCATAAAGTAAAGTAATC+AGG 0.423686 1_3:-75396062 Msa0140860:three_prime_UTR
TCTTCAACACTCCCTTCAAT+AGG 0.436660 1_3:+75397792 None:intergenic
TTTGTTCACTTTGTTAGTGT+TGG 0.440377 1_3:+75396633 None:intergenic
AAAGTGGGAAATTGAAAGCT+AGG 0.456327 1_3:-75396106 Msa0140860:three_prime_UTR
GAAGAGTCAGAGATATTATG+AGG 0.460214 1_3:+75397858 None:intergenic
TGTTTGTTGCGATGATCGAC+CGG 0.464501 1_3:-75396581 Msa0140860:CDS
TGGTTTACCTTATCAGACTT+AGG 0.468900 1_3:+75397675 None:intergenic
CAAAATTGCTTCAACATCAA+TGG 0.471398 1_3:-75396386 Msa0140860:CDS
GGCAGCATTTGAGCACAAAC+TGG 0.479615 1_3:-75397938 Msa0140860:CDS
ACTTATTCCTAAGTCTGATA+AGG 0.480745 1_3:-75397682 Msa0140860:intron
GATACTTCATCAATTTCAGT+TGG 0.481484 1_3:+75396688 None:intergenic
TCATGGAATTTACCTATTGA+AGG 0.482372 1_3:-75397804 Msa0140860:CDS
GATCAATTGCTACTTCCAAA+TGG 0.493842 1_3:-75396034 Msa0140860:three_prime_UTR
CAGAGAAAAGACGTAGAGAC+AGG 0.494900 1_3:-75397734 Msa0140860:CDS
AGGCAAAAGCAAAGTTAAAG+TGG 0.510801 1_3:-75396122 Msa0140860:three_prime_UTR
GCTGACATAGCAAGTGTTGG+TGG 0.516083 1_3:-75396502 Msa0140860:CDS
AATATAGTGAATTTCAGTCA+TGG 0.537343 1_3:-75397821 Msa0140860:CDS
CATGGAATTTACCTATTGAA+GGG 0.539204 1_3:-75397803 Msa0140860:CDS
ATCTGTGTAGGTACAGTCAC+AGG 0.552887 1_3:+75397885 None:intergenic
AGTGCAACAAACAGTAACAT+TGG 0.567926 1_3:-75398075 Msa0140860:five_prime_UTR
ATTGTCCTACAAGAAGTAAG+AGG 0.570567 1_3:-75396357 Msa0140860:CDS
AGATCTAAAACGAAAAGCAA+TGG 0.577531 1_3:-75396734 Msa0140860:CDS
GAACTAATCCAAGTCCTCAA+AGG 0.579974 1_3:-75396547 Msa0140860:CDS
TGGACAAAGCAGCATTACTA+GGG 0.580902 1_3:-75396777 Msa0140860:CDS
GGCAAAAGCAAAGTTAAAGT+GGG 0.581854 1_3:-75396121 Msa0140860:three_prime_UTR
TCACCATCAAGATAAGAAGA+AGG 0.589765 1_3:-75398120 Msa0140860:five_prime_UTR
AAAGCTGACATAGCAAGTGT+TGG 0.610561 1_3:-75396505 Msa0140860:CDS
TGGTTTCATCTTCAACAACA+TGG 0.610583 1_3:+75396653 None:intergenic
AATTACTATACAAAATGAGA+AGG 0.613826 1_3:+75396319 None:intergenic
TTATGAGGTAGTATCTGTGT+AGG 0.633198 1_3:+75397873 None:intergenic
GGACAAACTATATATCTCAG+AGG 0.694947 1_3:+75396183 None:intergenic
ACTACAATGATTCTTCTGAG+TGG 0.704840 1_3:-75397959 Msa0140860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTAATTAGGA+GGG - chr1_3:75397873-75397892 Msa0140860:CDS 10.0%
!!! TTTTTTTTTTTTAATTAGGA+GGG - chr1_3:75397873-75397892 Msa0140860:CDS 10.0%
!! CAACATCAAAAATTTAAAAA+TGG - chr1_3:75397016-75397035 Msa0140860:intron 15.0%
!!! CTCCTTTTTTTTTTTTAATT+AGG - chr1_3:75397869-75397888 Msa0140860:CDS 15.0%
!! CTCCTAATTAAAAAAAAAAA+AGG + chr1_3:75397874-75397893 None:intergenic 15.0%
!!! CTTTTTTTTTTTTAATTAGG+AGG - chr1_3:75397872-75397891 Msa0140860:CDS 15.0%
!! CAACATCAAAAATTTAAAAA+TGG - chr1_3:75397016-75397035 Msa0140860:intron 15.0%
!!! CTCCTTTTTTTTTTTTAATT+AGG - chr1_3:75397869-75397888 Msa0140860:CDS 15.0%
!! CTCCTAATTAAAAAAAAAAA+AGG + chr1_3:75397874-75397893 None:intergenic 15.0%
!!! CTTTTTTTTTTTTAATTAGG+AGG - chr1_3:75397872-75397891 Msa0140860:CDS 15.0%
!!! ACTCAAATTTTTTAGATTCA+CGG - chr1_3:75396886-75396905 Msa0140860:intron 20.0%
!! CTGAAAATAATTTGAGAAAA+TGG + chr1_3:75397171-75397190 None:intergenic 20.0%
!! AATTACTATACAAAATGAGA+AGG + chr1_3:75397822-75397841 None:intergenic 20.0%
!!! ACTCAAATTTTTTAGATTCA+CGG - chr1_3:75396886-75396905 Msa0140860:intron 20.0%
!! CTGAAAATAATTTGAGAAAA+TGG + chr1_3:75397171-75397190 None:intergenic 20.0%
!! AATTACTATACAAAATGAGA+AGG + chr1_3:75397822-75397841 None:intergenic 20.0%
! GTATTGTATTATTTCCCATT+TGG - chr1_3:75396143-75396162 Msa0140860:three_prime_UTR 25.0%
! AATATAGTGAATTTCAGTCA+TGG - chr1_3:75396317-75396336 Msa0140860:exon 25.0%
! ACATATTTCATGCAAGAAAA+TGG - chr1_3:75396577-75396596 Msa0140860:CDS 25.0%
! AAAATGGAATTACCTACTTA+GGG - chr1_3:75396593-75396612 Msa0140860:CDS 25.0%
! TATAATTCAAAGCATGTACT+TGG - chr1_3:75396751-75396770 Msa0140860:CDS 25.0%
!! TCTATTTCTTATTGTGTGTT+TGG - chr1_3:75396815-75396834 Msa0140860:intron 25.0%
! TAAAATATCTTACTTCGTAC+CGG + chr1_3:75397051-75397070 None:intergenic 25.0%
!!! TCATTTTAAAAGTTTGTCCA+AGG - chr1_3:75397098-75397117 Msa0140860:intron 25.0%
! CAAATGATTATGTTATGCAA+GGG + chr1_3:75397329-75397348 None:intergenic 25.0%
! ACAAATGATTATGTTATGCA+AGG + chr1_3:75397330-75397349 None:intergenic 25.0%
!! TATATTAGTGCTTTGTTCTA+AGG - chr1_3:75397671-75397690 Msa0140860:intron 25.0%
!! AGATATATAGTTTGTCCATT+AGG - chr1_3:75397961-75397980 Msa0140860:CDS 25.0%
!! GATATATAGTTTGTCCATTA+GGG - chr1_3:75397962-75397981 Msa0140860:CDS 25.0%
!! TGATTTTGTACCACTAATTA+AGG - chr1_3:75397996-75398015 Msa0140860:five_prime_UTR 25.0%
! ATGCATAAAGTAAAGTAATC+AGG - chr1_3:75398076-75398095 Msa0140860:five_prime_UTR 25.0%
!! ATTTTATATCTCAATCGACT+GGG - chr1_3:75398143-75398162 Msa0140860:five_prime_UTR 25.0%
! GTATTGTATTATTTCCCATT+TGG - chr1_3:75396143-75396162 Msa0140860:three_prime_UTR 25.0%
! AATATAGTGAATTTCAGTCA+TGG - chr1_3:75396317-75396336 Msa0140860:exon 25.0%
! ACATATTTCATGCAAGAAAA+TGG - chr1_3:75396577-75396596 Msa0140860:CDS 25.0%
! AAAATGGAATTACCTACTTA+GGG - chr1_3:75396593-75396612 Msa0140860:CDS 25.0%
! TATAATTCAAAGCATGTACT+TGG - chr1_3:75396751-75396770 Msa0140860:CDS 25.0%
!! TCTATTTCTTATTGTGTGTT+TGG - chr1_3:75396815-75396834 Msa0140860:intron 25.0%
! TAAAATATCTTACTTCGTAC+CGG + chr1_3:75397051-75397070 None:intergenic 25.0%
!!! TCATTTTAAAAGTTTGTCCA+AGG - chr1_3:75397098-75397117 Msa0140860:intron 25.0%
! CAAATGATTATGTTATGCAA+GGG + chr1_3:75397329-75397348 None:intergenic 25.0%
! ACAAATGATTATGTTATGCA+AGG + chr1_3:75397330-75397349 None:intergenic 25.0%
!! TATATTAGTGCTTTGTTCTA+AGG - chr1_3:75397671-75397690 Msa0140860:intron 25.0%
!! AGATATATAGTTTGTCCATT+AGG - chr1_3:75397961-75397980 Msa0140860:CDS 25.0%
!! GATATATAGTTTGTCCATTA+GGG - chr1_3:75397962-75397981 Msa0140860:CDS 25.0%
!! TGATTTTGTACCACTAATTA+AGG - chr1_3:75397996-75398015 Msa0140860:five_prime_UTR 25.0%
! ATGCATAAAGTAAAGTAATC+AGG - chr1_3:75398076-75398095 Msa0140860:five_prime_UTR 25.0%
TCTTCAATGCTTTCTTTATG+AGG + chr1_3:75396105-75396124 None:intergenic 30.0%
!! AGAAAGCATTGAAGAAAGTT+TGG - chr1_3:75396110-75396129 Msa0140860:three_prime_UTR 30.0%
! TTTTCCATACTCATCCAAAT+GGG + chr1_3:75396160-75396179 None:intergenic 30.0%
TCATGGAATTTACCTATTGA+AGG - chr1_3:75396334-75396353 Msa0140860:CDS 30.0%
CATGGAATTTACCTATTGAA+GGG - chr1_3:75396335-75396354 Msa0140860:CDS 30.0%
ACTTATTCCTAAGTCTGATA+AGG - chr1_3:75396456-75396475 Msa0140860:CDS 30.0%
GAAAATGGAATTACCTACTT+AGG - chr1_3:75396592-75396611 Msa0140860:CDS 30.0%
AATGCAACATCTTATCACTT+GGG + chr1_3:75396623-75396642 None:intergenic 30.0%
ATGTTGCATTCATTCAATTC+AGG - chr1_3:75396633-75396652 Msa0140860:CDS 30.0%
! TTTTGACAAAAGCTACCTTT+TGG - chr1_3:75396683-75396702 Msa0140860:CDS 30.0%
! TTTGACAAAAGCTACCTTTT+GGG - chr1_3:75396684-75396703 Msa0140860:CDS 30.0%
! CATTTTATGTAAGTCCCAAA+AGG + chr1_3:75396701-75396720 None:intergenic 30.0%
AGTCTTGAGTATGAACAATT+TGG - chr1_3:75396790-75396809 Msa0140860:intron 30.0%
TTATTGTGTGTTTGGATTGA+TGG - chr1_3:75396823-75396842 Msa0140860:intron 30.0%
!!! CAAATTTTTTAGATTCACGG+TGG - chr1_3:75396889-75396908 Msa0140860:intron 30.0%
TTTGGATTGAGTAAAATTGC+CGG + chr1_3:75396927-75396946 None:intergenic 30.0%
ATCAATTCTTGATGCATGTT+TGG + chr1_3:75396945-75396964 None:intergenic 30.0%
! ATCCTATATTTTCTCCAAGA+GGG + chr1_3:75396977-75396996 None:intergenic 30.0%
TTGTAATCAAATACGACTAG+TGG + chr1_3:75397253-75397272 None:intergenic 30.0%
ATCATTTGTATACTTGCAGA+TGG - chr1_3:75397341-75397360 Msa0140860:intron 30.0%
! AGATCTAAAACGAAAAGCAA+TGG - chr1_3:75397404-75397423 Msa0140860:intron 30.0%
GATACTTCATCAATTTCAGT+TGG + chr1_3:75397453-75397472 None:intergenic 30.0%
TTTGTTCACTTTGTTAGTGT+TGG + chr1_3:75397508-75397527 None:intergenic 30.0%
ATTAGTTCAGAGAACAATTC+CGG + chr1_3:75397579-75397598 None:intergenic 30.0%
TTGTAAGTCTTAAACCTTTG+AGG + chr1_3:75397608-75397627 None:intergenic 30.0%
! CATTGATGTTGAAGCAATTT+TGG + chr1_3:75397754-75397773 None:intergenic 30.0%
CAAAATTGCTTCAACATCAA+TGG - chr1_3:75397752-75397771 Msa0140860:CDS 30.0%
!! TTTGCTTTTGCCTTAATTAG+TGG + chr1_3:75398009-75398028 None:intergenic 30.0%
! AAAGTCTGTACTTTTCCATT+TGG + chr1_3:75398122-75398141 None:intergenic 30.0%
! GATTTTATATCTCAATCGAC+TGG - chr1_3:75398142-75398161 Msa0140860:five_prime_UTR 30.0%
TCTTCAATGCTTTCTTTATG+AGG + chr1_3:75396105-75396124 None:intergenic 30.0%
!! AGAAAGCATTGAAGAAAGTT+TGG - chr1_3:75396110-75396129 Msa0140860:three_prime_UTR 30.0%
! TTTTCCATACTCATCCAAAT+GGG + chr1_3:75396160-75396179 None:intergenic 30.0%
TCATGGAATTTACCTATTGA+AGG - chr1_3:75396334-75396353 Msa0140860:CDS 30.0%
CATGGAATTTACCTATTGAA+GGG - chr1_3:75396335-75396354 Msa0140860:CDS 30.0%
ACTTATTCCTAAGTCTGATA+AGG - chr1_3:75396456-75396475 Msa0140860:CDS 30.0%
GAAAATGGAATTACCTACTT+AGG - chr1_3:75396592-75396611 Msa0140860:CDS 30.0%
AATGCAACATCTTATCACTT+GGG + chr1_3:75396623-75396642 None:intergenic 30.0%
ATGTTGCATTCATTCAATTC+AGG - chr1_3:75396633-75396652 Msa0140860:CDS 30.0%
! TTTTGACAAAAGCTACCTTT+TGG - chr1_3:75396683-75396702 Msa0140860:CDS 30.0%
! TTTGACAAAAGCTACCTTTT+GGG - chr1_3:75396684-75396703 Msa0140860:CDS 30.0%
! CATTTTATGTAAGTCCCAAA+AGG + chr1_3:75396701-75396720 None:intergenic 30.0%
AGTCTTGAGTATGAACAATT+TGG - chr1_3:75396790-75396809 Msa0140860:intron 30.0%
TTATTGTGTGTTTGGATTGA+TGG - chr1_3:75396823-75396842 Msa0140860:intron 30.0%
!!! CAAATTTTTTAGATTCACGG+TGG - chr1_3:75396889-75396908 Msa0140860:intron 30.0%
TTTGGATTGAGTAAAATTGC+CGG + chr1_3:75396927-75396946 None:intergenic 30.0%
ATCAATTCTTGATGCATGTT+TGG + chr1_3:75396945-75396964 None:intergenic 30.0%
! ATCCTATATTTTCTCCAAGA+GGG + chr1_3:75396977-75396996 None:intergenic 30.0%
TTGTAATCAAATACGACTAG+TGG + chr1_3:75397253-75397272 None:intergenic 30.0%
ATCATTTGTATACTTGCAGA+TGG - chr1_3:75397341-75397360 Msa0140860:intron 30.0%
! AGATCTAAAACGAAAAGCAA+TGG - chr1_3:75397404-75397423 Msa0140860:intron 30.0%
GATACTTCATCAATTTCAGT+TGG + chr1_3:75397453-75397472 None:intergenic 30.0%
TTTGTTCACTTTGTTAGTGT+TGG + chr1_3:75397508-75397527 None:intergenic 30.0%
ATTAGTTCAGAGAACAATTC+CGG + chr1_3:75397579-75397598 None:intergenic 30.0%
TTGTAAGTCTTAAACCTTTG+AGG + chr1_3:75397608-75397627 None:intergenic 30.0%
! CATTGATGTTGAAGCAATTT+TGG + chr1_3:75397754-75397773 None:intergenic 30.0%
CAAAATTGCTTCAACATCAA+TGG - chr1_3:75397752-75397771 Msa0140860:CDS 30.0%
!! TTTGCTTTTGCCTTAATTAG+TGG + chr1_3:75398009-75398028 None:intergenic 30.0%
! AAAGTCTGTACTTTTCCATT+TGG + chr1_3:75398122-75398141 None:intergenic 30.0%
!! CTTCTTATCTTGATGGTGAT+TGG + chr1_3:75396017-75396036 None:intergenic 35.0%
TCACCATCAAGATAAGAAGA+AGG - chr1_3:75396018-75396037 Msa0140860:three_prime_UTR 35.0%
TGACCTTCTTCTTATCTTGA+TGG + chr1_3:75396024-75396043 None:intergenic 35.0%
AGTGCAACAAACAGTAACAT+TGG - chr1_3:75396063-75396082 Msa0140860:three_prime_UTR 35.0%
ATTTCCCATTTGGATGAGTA+TGG - chr1_3:75396153-75396172 Msa0140860:three_prime_UTR 35.0%
! GTTTTCCATACTCATCCAAA+TGG + chr1_3:75396161-75396180 None:intergenic 35.0%
ACTACAATGATTCTTCTGAG+TGG - chr1_3:75396179-75396198 Msa0140860:three_prime_UTR 35.0%
TTATGAGGTAGTATCTGTGT+AGG + chr1_3:75396268-75396287 None:intergenic 35.0%
GAAGAGTCAGAGATATTATG+AGG + chr1_3:75396283-75396302 None:intergenic 35.0%
AATATCTCTGACTCTTCTTC+TGG - chr1_3:75396286-75396305 Msa0140860:three_prime_UTR 35.0%
TGGTTTACCTTATCAGACTT+AGG + chr1_3:75396466-75396485 None:intergenic 35.0%
GAATGCAACATCTTATCACT+TGG + chr1_3:75396624-75396643 None:intergenic 35.0%
CGAGTTTGACAAAATTACAG+TGG + chr1_3:75396730-75396749 None:intergenic 35.0%
AGTAAAATTGCCGGAATAAC+GGG + chr1_3:75396918-75396937 None:intergenic 35.0%
GAGTAAAATTGCCGGAATAA+CGG + chr1_3:75396919-75396938 None:intergenic 35.0%
! TCCTATATTTTCTCCAAGAG+GGG + chr1_3:75396976-75396995 None:intergenic 35.0%
! CATCCTATATTTTCTCCAAG+AGG + chr1_3:75396978-75396997 None:intergenic 35.0%
! ATGAAGTATCACTGCTACAT+AGG + chr1_3:75397082-75397101 None:intergenic 35.0%
TTAAAAGTTTGTCCAAGGTC+AGG - chr1_3:75397103-75397122 Msa0140860:intron 35.0%
CACATGTGTTAGTGTCATAT+TGG + chr1_3:75397131-75397150 None:intergenic 35.0%
TGGTTTCATCTTCAACAACA+TGG + chr1_3:75397488-75397507 None:intergenic 35.0%
!! TTTGGTCACTGCTGATTTAA+GGG + chr1_3:75397736-75397755 None:intergenic 35.0%
!!! TTTTGGTCACTGCTGATTTA+AGG + chr1_3:75397737-75397756 None:intergenic 35.0%
ATTGTCCTACAAGAAGTAAG+AGG - chr1_3:75397781-75397800 Msa0140860:CDS 35.0%
!!! AGGAGGGTCATTTATTTTTG+TGG - chr1_3:75397889-75397908 Msa0140860:CDS 35.0%
!!! GGAGGGTCATTTATTTTTGT+GGG - chr1_3:75397890-75397909 Msa0140860:CDS 35.0%
!!! GAGGGTCATTTATTTTTGTG+GGG - chr1_3:75397891-75397910 Msa0140860:CDS 35.0%
!!! AGGGTCATTTATTTTTGTGG+GGG - chr1_3:75397892-75397911 Msa0140860:CDS 35.0%
GGACAAACTATATATCTCAG+AGG + chr1_3:75397958-75397977 None:intergenic 35.0%
TCAATCTTTCATCTCCCTAA+TGG + chr1_3:75397979-75397998 None:intergenic 35.0%
AGGCAAAAGCAAAGTTAAAG+TGG - chr1_3:75398016-75398035 Msa0140860:five_prime_UTR 35.0%
GGCAAAAGCAAAGTTAAAGT+GGG - chr1_3:75398017-75398036 Msa0140860:five_prime_UTR 35.0%
AAAGTGGGAAATTGAAAGCT+AGG - chr1_3:75398032-75398051 Msa0140860:five_prime_UTR 35.0%
! GATCAATTGCTACTTCCAAA+TGG - chr1_3:75398104-75398123 Msa0140860:five_prime_UTR 35.0%
!! CTTCTTATCTTGATGGTGAT+TGG + chr1_3:75396017-75396036 None:intergenic 35.0%
TCACCATCAAGATAAGAAGA+AGG - chr1_3:75396018-75396037 Msa0140860:three_prime_UTR 35.0%
TGACCTTCTTCTTATCTTGA+TGG + chr1_3:75396024-75396043 None:intergenic 35.0%
AGTGCAACAAACAGTAACAT+TGG - chr1_3:75396063-75396082 Msa0140860:three_prime_UTR 35.0%
ATTTCCCATTTGGATGAGTA+TGG - chr1_3:75396153-75396172 Msa0140860:three_prime_UTR 35.0%
! GTTTTCCATACTCATCCAAA+TGG + chr1_3:75396161-75396180 None:intergenic 35.0%
ACTACAATGATTCTTCTGAG+TGG - chr1_3:75396179-75396198 Msa0140860:three_prime_UTR 35.0%
TTATGAGGTAGTATCTGTGT+AGG + chr1_3:75396268-75396287 None:intergenic 35.0%
GAAGAGTCAGAGATATTATG+AGG + chr1_3:75396283-75396302 None:intergenic 35.0%
AATATCTCTGACTCTTCTTC+TGG - chr1_3:75396286-75396305 Msa0140860:three_prime_UTR 35.0%
TGGTTTACCTTATCAGACTT+AGG + chr1_3:75396466-75396485 None:intergenic 35.0%
GAATGCAACATCTTATCACT+TGG + chr1_3:75396624-75396643 None:intergenic 35.0%
CGAGTTTGACAAAATTACAG+TGG + chr1_3:75396730-75396749 None:intergenic 35.0%
AGTAAAATTGCCGGAATAAC+GGG + chr1_3:75396918-75396937 None:intergenic 35.0%
GAGTAAAATTGCCGGAATAA+CGG + chr1_3:75396919-75396938 None:intergenic 35.0%
! TCCTATATTTTCTCCAAGAG+GGG + chr1_3:75396976-75396995 None:intergenic 35.0%
! CATCCTATATTTTCTCCAAG+AGG + chr1_3:75396978-75396997 None:intergenic 35.0%
! ATGAAGTATCACTGCTACAT+AGG + chr1_3:75397082-75397101 None:intergenic 35.0%
TTAAAAGTTTGTCCAAGGTC+AGG - chr1_3:75397103-75397122 Msa0140860:intron 35.0%
CACATGTGTTAGTGTCATAT+TGG + chr1_3:75397131-75397150 None:intergenic 35.0%
TGGTTTCATCTTCAACAACA+TGG + chr1_3:75397488-75397507 None:intergenic 35.0%
!! TTTGGTCACTGCTGATTTAA+GGG + chr1_3:75397736-75397755 None:intergenic 35.0%
!!! TTTTGGTCACTGCTGATTTA+AGG + chr1_3:75397737-75397756 None:intergenic 35.0%
ATTGTCCTACAAGAAGTAAG+AGG - chr1_3:75397781-75397800 Msa0140860:CDS 35.0%
!!! AGGAGGGTCATTTATTTTTG+TGG - chr1_3:75397889-75397908 Msa0140860:CDS 35.0%
!!! GGAGGGTCATTTATTTTTGT+GGG - chr1_3:75397890-75397909 Msa0140860:CDS 35.0%
!!! GAGGGTCATTTATTTTTGTG+GGG - chr1_3:75397891-75397910 Msa0140860:CDS 35.0%
!!! AGGGTCATTTATTTTTGTGG+GGG - chr1_3:75397892-75397911 Msa0140860:CDS 35.0%
GGACAAACTATATATCTCAG+AGG + chr1_3:75397958-75397977 None:intergenic 35.0%
TCAATCTTTCATCTCCCTAA+TGG + chr1_3:75397979-75397998 None:intergenic 35.0%
AGGCAAAAGCAAAGTTAAAG+TGG - chr1_3:75398016-75398035 Msa0140860:five_prime_UTR 35.0%
GGCAAAAGCAAAGTTAAAGT+GGG - chr1_3:75398017-75398036 Msa0140860:five_prime_UTR 35.0%
AAAGTGGGAAATTGAAAGCT+AGG - chr1_3:75398032-75398051 Msa0140860:five_prime_UTR 35.0%
! GATCAATTGCTACTTCCAAA+TGG - chr1_3:75398104-75398123 Msa0140860:five_prime_UTR 35.0%
TCTTCAACACTCCCTTCAAT+AGG + chr1_3:75396349-75396368 None:intergenic 40.0%
GTAAAATTGCCGGAATAACG+GGG + chr1_3:75396917-75396936 None:intergenic 40.0%
TCCCCTCTTGGAGAAAATAT+AGG - chr1_3:75396972-75396991 Msa0140860:intron 40.0%
TTAAAAATGGTCTACCACGC+CGG - chr1_3:75397029-75397048 Msa0140860:intron 40.0%
CGTAATTACTAAGACAGCCA+CGG + chr1_3:75397219-75397238 None:intergenic 40.0%
TGTCGGGACTCTTAATATTG+CGG + chr1_3:75397280-75397299 None:intergenic 40.0%
ATGGACAAAGCAGCATTACT+AGG - chr1_3:75397360-75397379 Msa0140860:intron 40.0%
TGGACAAAGCAGCATTACTA+GGG - chr1_3:75397361-75397380 Msa0140860:intron 40.0%
GAACTAATCCAAGTCCTCAA+AGG - chr1_3:75397591-75397610 Msa0140860:intron 40.0%
! GTCTTAAACCTTTGAGGACT+TGG + chr1_3:75397602-75397621 None:intergenic 40.0%
AAAGCTGACATAGCAAGTGT+TGG - chr1_3:75397633-75397652 Msa0140860:intron 40.0%
TCTTCAACACTCCCTTCAAT+AGG + chr1_3:75396349-75396368 None:intergenic 40.0%
GTAAAATTGCCGGAATAACG+GGG + chr1_3:75396917-75396936 None:intergenic 40.0%
TCCCCTCTTGGAGAAAATAT+AGG - chr1_3:75396972-75396991 Msa0140860:intron 40.0%
TTAAAAATGGTCTACCACGC+CGG - chr1_3:75397029-75397048 Msa0140860:intron 40.0%
CGTAATTACTAAGACAGCCA+CGG + chr1_3:75397219-75397238 None:intergenic 40.0%
TGTCGGGACTCTTAATATTG+CGG + chr1_3:75397280-75397299 None:intergenic 40.0%
ATGGACAAAGCAGCATTACT+AGG - chr1_3:75397360-75397379 Msa0140860:intron 40.0%
TGGACAAAGCAGCATTACTA+GGG - chr1_3:75397361-75397380 Msa0140860:intron 40.0%
GAACTAATCCAAGTCCTCAA+AGG - chr1_3:75397591-75397610 Msa0140860:intron 40.0%
! GTCTTAAACCTTTGAGGACT+TGG + chr1_3:75397602-75397621 None:intergenic 40.0%
AAAGCTGACATAGCAAGTGT+TGG - chr1_3:75397633-75397652 Msa0140860:intron 40.0%
ATCTGTGTAGGTACAGTCAC+AGG + chr1_3:75396256-75396275 None:intergenic 45.0%
CTCTGCTTGACTATGACTCT+TGG + chr1_3:75396389-75396408 None:intergenic 45.0%
CAGAGAAAAGACGTAGAGAC+AGG - chr1_3:75396404-75396423 Msa0140860:CDS 45.0%
! CACTTGGGTTTTCCCTAAGT+AGG + chr1_3:75396608-75396627 None:intergenic 45.0%
TTGATTTCCACTTCCCCTCT+TGG - chr1_3:75396960-75396979 Msa0140860:intron 45.0%
! ATTTTCTCCAAGAGGGGAAG+TGG + chr1_3:75396970-75396989 None:intergenic 45.0%
GTCATATTGGTACCTGACCT+TGG + chr1_3:75397118-75397137 None:intergenic 45.0%
! TGTTTGTTGCGATGATCGAC+CGG - chr1_3:75397557-75397576 Msa0140860:intron 45.0%
CTCTGCCTCTTACTTCTTGT+AGG + chr1_3:75397789-75397808 None:intergenic 45.0%
ATCTGTGTAGGTACAGTCAC+AGG + chr1_3:75396256-75396275 None:intergenic 45.0%
CTCTGCTTGACTATGACTCT+TGG + chr1_3:75396389-75396408 None:intergenic 45.0%
CAGAGAAAAGACGTAGAGAC+AGG - chr1_3:75396404-75396423 Msa0140860:CDS 45.0%
! CACTTGGGTTTTCCCTAAGT+AGG + chr1_3:75396608-75396627 None:intergenic 45.0%
TTGATTTCCACTTCCCCTCT+TGG - chr1_3:75396960-75396979 Msa0140860:intron 45.0%
! ATTTTCTCCAAGAGGGGAAG+TGG + chr1_3:75396970-75396989 None:intergenic 45.0%
GTCATATTGGTACCTGACCT+TGG + chr1_3:75397118-75397137 None:intergenic 45.0%
! TGTTTGTTGCGATGATCGAC+CGG - chr1_3:75397557-75397576 Msa0140860:intron 45.0%
CTCTGCCTCTTACTTCTTGT+AGG + chr1_3:75397789-75397808 None:intergenic 45.0%
!! GAAAAAATAAAAAATAAAAT+TGG + chr1_3:75396486-75396505 None:intergenic 5.0%
!! GAAAAAATAAAAAATAAAAT+TGG + chr1_3:75396486-75396505 None:intergenic 5.0%
GGCAGCATTTGAGCACAAAC+TGG - chr1_3:75396200-75396219 Msa0140860:three_prime_UTR 50.0%
! TATCTTACTTCGTACCGGCG+TGG + chr1_3:75397046-75397065 None:intergenic 50.0%
AAGTCGCGTTGCAGTTCTGT+CGG + chr1_3:75397297-75397316 None:intergenic 50.0%
!! GCTGACATAGCAAGTGTTGG+TGG - chr1_3:75397636-75397655 Msa0140860:intron 50.0%
GGCAGCATTTGAGCACAAAC+TGG - chr1_3:75396200-75396219 Msa0140860:three_prime_UTR 50.0%
! TATCTTACTTCGTACCGGCG+TGG + chr1_3:75397046-75397065 None:intergenic 50.0%
AAGTCGCGTTGCAGTTCTGT+CGG + chr1_3:75397297-75397316 None:intergenic 50.0%
!! GCTGACATAGCAAGTGTTGG+TGG - chr1_3:75397636-75397655 Msa0140860:intron 50.0%
! TGATTTGTGTGCAGCGTCCG+TGG - chr1_3:75397199-75397218 Msa0140860:intron 55.0%
AGTCGCGTTGCAGTTCTGTC+GGG + chr1_3:75397296-75397315 None:intergenic 55.0%
! TGATTTGTGTGCAGCGTCCG+TGG - chr1_3:75397199-75397218 Msa0140860:intron 55.0%
AGTCGCGTTGCAGTTCTGTC+GGG + chr1_3:75397296-75397315 None:intergenic 55.0%
ACGGTGGCTCCCCGTTATTC+CGG - chr1_3:75396905-75396924 Msa0140860:intron 60.0%
ACGGTGGCTCCCCGTTATTC+CGG - chr1_3:75396905-75396924 Msa0140860:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 75395996 75398164 75395996 ID=Msa0140860;Name=Msa0140860
chr1_3 mRNA 75395996 75398164 75395996 ID=Msa0140860-mRNA-1;Parent=Msa0140860;Name=Msa0140860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|2|328|262
chr1_3 exon 75395996 75396800 75395996 ID=Msa0140860-mRNA-1:exon:26307;Parent=Msa0140860-mRNA-1
chr1_3 exon 75397683 75398164 75397683 ID=Msa0140860-mRNA-1:exon:26306;Parent=Msa0140860-mRNA-1
chr1_3 five_prime_UTR 75397995 75398164 75397995 ID=Msa0140860-mRNA-1:five_prime_utr;Parent=Msa0140860-mRNA-1
chr1_3 CDS 75397683 75397994 75397683 ID=Msa0140860-mRNA-1:cds;Parent=Msa0140860-mRNA-1
chr1_3 CDS 75396324 75396800 75396324 ID=Msa0140860-mRNA-1:cds;Parent=Msa0140860-mRNA-1
chr1_3 three_prime_UTR 75395996 75396323 75395996 ID=Msa0140860-mRNA-1:three_prime_utr;Parent=Msa0140860-mRNA-1
Gene Sequence

>Msa0140860

ATGAGTATGGAAAACTACAATGATTCTTCTGAGTGGCAGCATTTGAGCACAAACTGGTCTCAATACAGTAATGATCATTCACAATTTCCTGTGACTGTACCTACACAGATACTACCTCATAATATCTCTGACTCTTCTTCTGGTTCTTTTCAATATAGTGAATTTCAGTCATGGAATTTACCTATTGAAGGGAGTGTTGAAGATAGAGCAGCAAGTGCTTCCAAGAGTCATAGTCAAGCAGAGAAAAGACGTAGAGACAGGATTAATACACAGCTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGATAGATCAAGTCAAAGATCTAAAACGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTATAACCATGTTGTTGAAGATGAAACCAACACTAACAAAGTGAACAAATTCAAAGACAACATCATCATCAAAGCTTCTGTTTGTTGCGATGATCGACCGGAATTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGCAGAATCAAAAGTATATTAGTGCTTTGTTCTAAGGACAGTGAAGAAAATGTTTGCATTAATACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCAACATCAATGGTATCTAATTGTCCTACAAGAAGTAAGAGGCAGAGATTCTTTTTGCCTTCTCATTTTGTATAG

Protein sequence

>Msa0140860

MSMENYNDSSEWQHLSTNWSQYSNDHSQFPVTVPTQILPHNISDSSSGSFQYSEFQSWNLPIEGSVEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVVEDETNTNKVNKFKDNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASTSMVSNCPTRSKRQRFFLPSHFV*