AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157740 MtrunA17_Chr7g0252121 99.115 226 2 0 1 226 251 476 2.92e-168 472
Msa1157740 MtrunA17_Chr8g0385931 42.411 224 102 4 2 223 245 443 2.68e-48 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157740 AT1G08660.1 80.088 226 41 2 1 223 247 471 1.11e-132 382
Msa1157740 AT1G08660.3 90.722 97 9 0 1 97 196 292 2.29e-60 191
Msa1157740 AT1G08660.2 90.722 97 9 0 1 97 247 343 3.82e-60 192
Msa1157740 AT3G48820.1 51.656 151 69 2 2 150 243 391 2.23e-46 159
Msa1157740 AT3G48820.2 51.656 151 69 2 2 150 234 382 2.32e-46 159

Find 80 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAATATGTATAATTTAAT+TGG 0.207820 7_4:-46797228 Msa1157740:three_prime_UTR
AACTCATGAAAACCCTTTAT+AGG 0.209533 7_4:+46797012 None:intergenic
CTTAAAATCTGAGGTGTAAA+TGG 0.225865 7_4:-46797428 Msa1157740:exon
GACAAAAGCGGGCCTATTTC+AGG 0.227048 7_4:-46797622 Msa1157740:CDS
GCCTCCTCTTGGATCTCATT+GGG 0.246413 7_4:+46797785 None:intergenic
TGTGATATTGTTGATATATA+TGG 0.269716 7_4:-46798118 Msa1157740:CDS
GGTTTAATTGTCAGGTAATC+AGG 0.288156 7_4:-46797816 Msa1157740:intron
ATGATCAACAAAGCCTATAA+AGG 0.296949 7_4:-46797025 Msa1157740:three_prime_UTR
TGCCTCCTCTTGGATCTCAT+TGG 0.304803 7_4:+46797784 None:intergenic
AGGGGTCTCTCAATATAAAA+TGG 0.307366 7_4:-46797491 Msa1157740:CDS
ATGTCTGATGATCCTGAAAT+AGG 0.330717 7_4:+46797610 None:intergenic
TGAAAGAGATAGACTGGATT+TGG 0.333118 7_4:+46798208 None:intergenic
ACTTCATCCCAGATTTCATT+TGG 0.339280 7_4:+46797360 None:intergenic
TGGCTTATCATTTCTCTACT+TGG 0.340741 7_4:+46797745 None:intergenic
GCCAAGCTGCTGCATGTGCT+TGG 0.357871 7_4:+46797725 None:intergenic
AGAAATCAATGCAGTTATAA+AGG 0.361897 7_4:-46798363 Msa1157740:intron
AGACTTCATTCCAGTTCCTT+TGG 0.375119 7_4:+46798162 None:intergenic
TGACCAGTCTTGCCTCCTCT+TGG 0.381860 7_4:+46797774 None:intergenic
ACTGTCATCCAAATGAAATC+TGG 0.390617 7_4:-46797368 Msa1157740:three_prime_UTR
CGTCGAGGTGCCAAAGGAAC+TGG 0.396799 7_4:-46798172 Msa1157740:CDS
ACCAACTTCTAGAATGTCTT+GGG 0.397048 7_4:-46797903 Msa1157740:CDS
AATCCAGTCTATCTCTTTCA+AGG 0.408067 7_4:-46798205 Msa1157740:CDS
GAGAAAGAGTTCAGCTGATA+AGG 0.432284 7_4:-46797698 Msa1157740:CDS
AAGAAGCACAGGTTCACTAT+AGG 0.442299 7_4:-46797522 Msa1157740:CDS
GCTGGTGGTAAAGGACAGTT+TGG 0.442541 7_4:-46797676 Msa1157740:CDS
AGATCTAGAAATCACAATAT+AGG 0.446794 7_4:-46797170 Msa1157740:three_prime_UTR
AGGACAGTTTGGCAATTGTA+AGG 0.448014 7_4:-46797665 Msa1157740:CDS
GCTGATAAGGCTGGTGGTAA+AGG 0.452884 7_4:-46797685 Msa1157740:CDS
AGTGGATTGTGTCCTTTCCT+AGG 0.452910 7_4:+46797943 None:intergenic
TAAAATGGATGGCAATAAGT+TGG 0.460044 7_4:-46797476 Msa1157740:CDS
CTGTCATCCAAATGAAATCT+GGG 0.466099 7_4:-46797367 Msa1157740:three_prime_UTR
TATGGTTTCACCGTTGATCC+AGG 0.471612 7_4:-46798100 Msa1157740:CDS
TAGTATGCTCTTCCTTGAAG+TGG 0.476909 7_4:+46797925 None:intergenic
TACCAACTTCTAGAATGTCT+TGG 0.482400 7_4:-46797904 Msa1157740:CDS
TGATCAACAAAGCCTATAAA+GGG 0.484609 7_4:-46797024 Msa1157740:three_prime_UTR
CCCCAAGACATTCTAGAAGT+TGG 0.486983 7_4:+46797902 None:intergenic
GATCCAAGAGGAGGCAAGAC+TGG 0.489885 7_4:-46797777 Msa1157740:CDS
ATGTGGACCCAGACAAAAGC+GGG 0.494827 7_4:-46797633 Msa1157740:CDS
CAAGATACTTCTCTGCTCCT+AGG 0.495170 7_4:-46797960 Msa1157740:CDS
AAAGGACACAATCCACTTCA+AGG 0.497194 7_4:-46797937 Msa1157740:CDS
ATTTGGATGACAGTTGGTTG+TGG 0.498193 7_4:+46797377 None:intergenic
GTTTGGCAATTGTAAGGTGT+GGG 0.501307 7_4:-46797659 Msa1157740:CDS
ACCCACCATTCAGTGTATCC+TGG 0.508551 7_4:+46798082 None:intergenic
TATTTATTACAATGTTCGAT+TGG 0.511916 7_4:-46797091 Msa1157740:three_prime_UTR
ATGAAACAGAGGAGCTATTG+AGG 0.519166 7_4:+46797312 None:intergenic
ATACCTTGAAAGAGATAGAC+TGG 0.519627 7_4:+46798202 None:intergenic
GTCTATCTAAACCTGAAAAG+AGG 0.523404 7_4:+46797121 None:intergenic
AAATTTGAGGAAAGAAGCAC+AGG 0.529783 7_4:-46797533 Msa1157740:CDS
TTCACTATAGGCAGATGGAA+GGG 0.532498 7_4:-46797510 Msa1157740:CDS
CTCTGTTTCATCATGTATTG+CGG 0.536455 7_4:-46797300 Msa1157740:three_prime_UTR
TCACTATAGGCAGATGGAAG+GGG 0.537519 7_4:-46797509 Msa1157740:CDS
AGTTTGGCAATTGTAAGGTG+TGG 0.538800 7_4:-46797660 Msa1157740:CDS
GCCAAGCACATGCAGCAGCT+TGG 0.538833 7_4:-46797726 Msa1157740:CDS
GTCTCTCAATATAAAATGGA+TGG 0.538948 7_4:-46797487 Msa1157740:CDS
GATTTCATTTGGATGACAGT+TGG 0.547928 7_4:+46797371 None:intergenic
TTTATACTCAAGGTTATCCA+TGG 0.564666 7_4:-46797196 Msa1157740:three_prime_UTR
TACTTCTCTGCTCCTAGGAA+AGG 0.566992 7_4:-46797955 Msa1157740:CDS
AAGAGTTCAGCTGATAAGGC+TGG 0.572871 7_4:-46797694 Msa1157740:CDS
CCTCCTCTTGGATCTCATTG+GGG 0.574779 7_4:+46797786 None:intergenic
GTACGAGTGATTTATACTCA+AGG 0.584824 7_4:-46797206 Msa1157740:three_prime_UTR
GTTCACTATAGGCAGATGGA+AGG 0.587248 7_4:-46797511 Msa1157740:CDS
TTGATCCAGGATACACTGAA+TGG 0.595103 7_4:-46798087 Msa1157740:intron
TTCAGTGTATCCTGGATCAA+CGG 0.599178 7_4:+46798090 None:intergenic
GTATTGCGGCTAGCAGAGCA+TGG 0.616129 7_4:-46797286 Msa1157740:three_prime_UTR
AAGAATCATAGTTCCATCGA+GGG 0.617343 7_4:-46797262 Msa1157740:three_prime_UTR
TGATTTCTAGATCTCTACCA+TGG 0.620782 7_4:+46797179 None:intergenic
GTACTGCGTCGAGGTGCCAA+AGG 0.622746 7_4:-46798178 Msa1157740:CDS
CGCAATACATGATGAAACAG+AGG 0.639375 7_4:+46797301 None:intergenic
CCCCAATGAGATCCAAGAGG+AGG 0.640530 7_4:-46797786 Msa1157740:CDS
TTGTAAGGTGTGGGGCAATG+TGG 0.643155 7_4:-46797650 Msa1157740:CDS
TTTGGCAATTGTAAGGTGTG+GGG 0.648161 7_4:-46797658 Msa1157740:CDS
GCTGAAGAAAGAATTATCTG+AGG 0.650400 7_4:-46797069 Msa1157740:three_prime_UTR
ACAGGTTCACTATAGGCAGA+TGG 0.653999 7_4:-46797515 Msa1157740:CDS
AGTTCAGCTGATAAGGCTGG+TGG 0.667356 7_4:-46797691 Msa1157740:CDS
TATATCAACAATATCACACA+TGG 0.673359 7_4:+46798123 None:intergenic
GAGACACTCCTTAAAATCTG+AGG 0.691632 7_4:-46797437 Msa1157740:CDS
AAAGAATCATAGTTCCATCG+AGG 0.702532 7_4:-46797263 Msa1157740:three_prime_UTR
AATGTGGACCCAGACAAAAG+CGG 0.706953 7_4:-46797634 Msa1157740:CDS
CCAACTTCTAGAATGTCTTG+GGG 0.724688 7_4:-46797902 Msa1157740:intron
ACTCCCCAATGAGATCCAAG+AGG 0.745071 7_4:-46797789 Msa1157740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATCAAAATTCAAATA+GGG + chr7_4:46797341-46797360 None:intergenic 10.0%
!! AAATAAATCAAAATTCAAAT+AGG + chr7_4:46797342-46797361 None:intergenic 10.0%
!! AGTATTCAAATTATAAAAAA+TGG - chr7_4:46797822-46797841 Msa1157740:intron 10.0%
!! GTATTCAAATTATAAAAAAT+GGG - chr7_4:46797823-46797842 Msa1157740:intron 10.0%
!! AATAAATCAAAATTCAAATA+GGG + chr7_4:46797341-46797360 None:intergenic 10.0%
!! AAATAAATCAAAATTCAAAT+AGG + chr7_4:46797342-46797361 None:intergenic 10.0%
!! AGTATTCAAATTATAAAAAA+TGG - chr7_4:46797822-46797841 Msa1157740:intron 10.0%
!! GTATTCAAATTATAAAAAAT+GGG - chr7_4:46797823-46797842 Msa1157740:intron 10.0%
!!! TTTTATATGTTTTTGACATT+TGG - chr7_4:46797558-46797577 Msa1157740:CDS 15.0%
!! GTCAATATGTATAATTTAAT+TGG - chr7_4:46798167-46798186 Msa1157740:CDS 15.0%
!!! TTTTATATGTTTTTGACATT+TGG - chr7_4:46797558-46797577 Msa1157740:CDS 15.0%
!! GTCAATATGTATAATTTAAT+TGG - chr7_4:46798167-46798186 Msa1157740:CDS 15.0%
!! TGTGATATTGTTGATATATA+TGG - chr7_4:46797277-46797296 Msa1157740:three_prime_UTR 20.0%
!! ATACAAATGTTATTCTATGT+GGG + chr7_4:46797536-46797555 None:intergenic 20.0%
!! AATACAAATGTTATTCTATG+TGG + chr7_4:46797537-46797556 None:intergenic 20.0%
!! TATTTATTACAATGTTCGAT+TGG - chr7_4:46798304-46798323 Msa1157740:intron 20.0%
!! TGTGATATTGTTGATATATA+TGG - chr7_4:46797277-46797296 Msa1157740:three_prime_UTR 20.0%
!! ATACAAATGTTATTCTATGT+GGG + chr7_4:46797536-46797555 None:intergenic 20.0%
!! AATACAAATGTTATTCTATG+TGG + chr7_4:46797537-46797556 None:intergenic 20.0%
!! TATTTATTACAATGTTCGAT+TGG - chr7_4:46798304-46798323 Msa1157740:intron 20.0%
! AGAAATCAATGCAGTTATAA+AGG - chr7_4:46797032-46797051 Msa1157740:three_prime_UTR 25.0%
! TATCAAGTTTATACACCAAA+AGG + chr7_4:46797093-46797112 None:intergenic 25.0%
! GTGTATAAACTTGATAAAGA+AGG - chr7_4:46797097-46797116 Msa1157740:three_prime_UTR 25.0%
!! ACTAATTCTAGGAAATACAA+TGG + chr7_4:46797126-46797145 None:intergenic 25.0%
! AATGTGGATAAACTAATTCT+AGG + chr7_4:46797137-46797156 None:intergenic 25.0%
! TATATCAACAATATCACACA+TGG + chr7_4:46797275-46797294 None:intergenic 25.0%
! AGGAAACAAAAGTGATAATA+AGG + chr7_4:46797408-46797427 None:intergenic 25.0%
!!! TATCACTTTTGTTTCCTTAT+AGG - chr7_4:46797411-46797430 Msa1157740:three_prime_UTR 25.0%
!!! TCTTTCCTCAAATTTTTCAA+AGG + chr7_4:46797857-46797876 None:intergenic 25.0%
! AGATCTAGAAATCACAATAT+AGG - chr7_4:46798225-46798244 Msa1157740:intron 25.0%
! AGAAATCAATGCAGTTATAA+AGG - chr7_4:46797032-46797051 Msa1157740:three_prime_UTR 25.0%
! TATCAAGTTTATACACCAAA+AGG + chr7_4:46797093-46797112 None:intergenic 25.0%
! GTGTATAAACTTGATAAAGA+AGG - chr7_4:46797097-46797116 Msa1157740:three_prime_UTR 25.0%
!! ACTAATTCTAGGAAATACAA+TGG + chr7_4:46797126-46797145 None:intergenic 25.0%
! AATGTGGATAAACTAATTCT+AGG + chr7_4:46797137-46797156 None:intergenic 25.0%
! TATATCAACAATATCACACA+TGG + chr7_4:46797275-46797294 None:intergenic 25.0%
! AGGAAACAAAAGTGATAATA+AGG + chr7_4:46797408-46797427 None:intergenic 25.0%
!!! TATCACTTTTGTTTCCTTAT+AGG - chr7_4:46797411-46797430 Msa1157740:three_prime_UTR 25.0%
!!! TCTTTCCTCAAATTTTTCAA+AGG + chr7_4:46797857-46797876 None:intergenic 25.0%
! AGATCTAGAAATCACAATAT+AGG - chr7_4:46798225-46798244 Msa1157740:intron 25.0%
! GATATCTATTTGATGCCTTT+TGG - chr7_4:46797075-46797094 Msa1157740:three_prime_UTR 30.0%
! TGACATTTGGTTTAATTGTC+AGG - chr7_4:46797571-46797590 Msa1157740:CDS 30.0%
! TCATGCCTTTGAAAAATTTG+AGG - chr7_4:46797849-46797868 Msa1157740:intron 30.0%
GTCTCTCAATATAAAATGGA+TGG - chr7_4:46797908-46797927 Msa1157740:CDS 30.0%
TAAAATGGATGGCAATAAGT+TGG - chr7_4:46797919-46797938 Msa1157740:CDS 30.0%
! CATTTACACCTCAGATTTTA+AGG + chr7_4:46797969-46797988 None:intergenic 30.0%
! CTTAAAATCTGAGGTGTAAA+TGG - chr7_4:46797967-46797986 Msa1157740:intron 30.0%
! GAGGTGTAAATGGTATTTTT+CGG - chr7_4:46797977-46797996 Msa1157740:intron 30.0%
TTTATACTCAAGGTTATCCA+TGG - chr7_4:46798199-46798218 Msa1157740:CDS 30.0%
ATGATCAACAAAGCCTATAA+AGG - chr7_4:46798370-46798389 Msa1157740:CDS 30.0%
TGATCAACAAAGCCTATAAA+GGG - chr7_4:46798371-46798390 Msa1157740:CDS 30.0%
AACTCATGAAAACCCTTTAT+AGG + chr7_4:46798386-46798405 None:intergenic 30.0%
!! AGGGTTTTCATGAGTTTTAA+TGG - chr7_4:46798390-46798409 Msa1157740:CDS 30.0%
! GATATCTATTTGATGCCTTT+TGG - chr7_4:46797075-46797094 Msa1157740:three_prime_UTR 30.0%
! TGACATTTGGTTTAATTGTC+AGG - chr7_4:46797571-46797590 Msa1157740:CDS 30.0%
! TCATGCCTTTGAAAAATTTG+AGG - chr7_4:46797849-46797868 Msa1157740:intron 30.0%
GTCTCTCAATATAAAATGGA+TGG - chr7_4:46797908-46797927 Msa1157740:CDS 30.0%
TAAAATGGATGGCAATAAGT+TGG - chr7_4:46797919-46797938 Msa1157740:CDS 30.0%
! CATTTACACCTCAGATTTTA+AGG + chr7_4:46797969-46797988 None:intergenic 30.0%
! CTTAAAATCTGAGGTGTAAA+TGG - chr7_4:46797967-46797986 Msa1157740:intron 30.0%
! GAGGTGTAAATGGTATTTTT+CGG - chr7_4:46797977-46797996 Msa1157740:intron 30.0%
TTTATACTCAAGGTTATCCA+TGG - chr7_4:46798199-46798218 Msa1157740:CDS 30.0%
ATGATCAACAAAGCCTATAA+AGG - chr7_4:46798370-46798389 Msa1157740:CDS 30.0%
TGATCAACAAAGCCTATAAA+GGG - chr7_4:46798371-46798390 Msa1157740:CDS 30.0%
AACTCATGAAAACCCTTTAT+AGG + chr7_4:46798386-46798405 None:intergenic 30.0%
!! AGGGTTTTCATGAGTTTTAA+TGG - chr7_4:46798390-46798409 Msa1157740:CDS 30.0%
AAAGGTAGTGCAAAAGAATG+TGG + chr7_4:46797153-46797172 None:intergenic 35.0%
TTGGTAGAGTCTGCATAAAA+AGG + chr7_4:46797171-46797190 None:intergenic 35.0%
TGAAAGAGATAGACTGGATT+TGG + chr7_4:46797190-46797209 None:intergenic 35.0%
AATCCAGTCTATCTCTTTCA+AGG - chr7_4:46797190-46797209 Msa1157740:three_prime_UTR 35.0%
ATACCTTGAAAGAGATAGAC+TGG + chr7_4:46797196-46797215 None:intergenic 35.0%
!! GAGAAGTATCTTGTCCTATA+AGG + chr7_4:46797428-46797447 None:intergenic 35.0%
!! TACCAACTTCTAGAATGTCT+TGG - chr7_4:46797491-46797510 Msa1157740:CDS 35.0%
!! ACCAACTTCTAGAATGTCTT+GGG - chr7_4:46797492-46797511 Msa1157740:CDS 35.0%
GGTTTAATTGTCAGGTAATC+AGG - chr7_4:46797579-46797598 Msa1157740:CDS 35.0%
TGGCTTATCATTTCTCTACT+TGG + chr7_4:46797653-46797672 None:intergenic 35.0%
ATGTCTGATGATCCTGAAAT+AGG + chr7_4:46797788-46797807 None:intergenic 35.0%
! AAATTTGAGGAAAGAAGCAC+AGG - chr7_4:46797862-46797881 Msa1157740:intron 35.0%
AGGGGTCTCTCAATATAAAA+TGG - chr7_4:46797904-46797923 Msa1157740:CDS 35.0%
GATTTCATTTGGATGACAGT+TGG + chr7_4:46798027-46798046 None:intergenic 35.0%
ACTGTCATCCAAATGAAATC+TGG - chr7_4:46798027-46798046 Msa1157740:intron 35.0%
CTGTCATCCAAATGAAATCT+GGG - chr7_4:46798028-46798047 Msa1157740:intron 35.0%
ACTTCATCCCAGATTTCATT+TGG + chr7_4:46798038-46798057 None:intergenic 35.0%
CTCTGTTTCATCATGTATTG+CGG - chr7_4:46798095-46798114 Msa1157740:CDS 35.0%
AAAGAATCATAGTTCCATCG+AGG - chr7_4:46798132-46798151 Msa1157740:CDS 35.0%
AAGAATCATAGTTCCATCGA+GGG - chr7_4:46798133-46798152 Msa1157740:CDS 35.0%
GTACGAGTGATTTATACTCA+AGG - chr7_4:46798189-46798208 Msa1157740:CDS 35.0%
! TGATTTCTAGATCTCTACCA+TGG + chr7_4:46798219-46798238 None:intergenic 35.0%
GTCTATCTAAACCTGAAAAG+AGG + chr7_4:46798277-46798296 None:intergenic 35.0%
GCTGAAGAAAGAATTATCTG+AGG - chr7_4:46798326-46798345 Msa1157740:intron 35.0%
AAAGGTAGTGCAAAAGAATG+TGG + chr7_4:46797153-46797172 None:intergenic 35.0%
TTGGTAGAGTCTGCATAAAA+AGG + chr7_4:46797171-46797190 None:intergenic 35.0%
TGAAAGAGATAGACTGGATT+TGG + chr7_4:46797190-46797209 None:intergenic 35.0%
AATCCAGTCTATCTCTTTCA+AGG - chr7_4:46797190-46797209 Msa1157740:three_prime_UTR 35.0%
ATACCTTGAAAGAGATAGAC+TGG + chr7_4:46797196-46797215 None:intergenic 35.0%
!! GAGAAGTATCTTGTCCTATA+AGG + chr7_4:46797428-46797447 None:intergenic 35.0%
!! TACCAACTTCTAGAATGTCT+TGG - chr7_4:46797491-46797510 Msa1157740:CDS 35.0%
!! ACCAACTTCTAGAATGTCTT+GGG - chr7_4:46797492-46797511 Msa1157740:CDS 35.0%
GGTTTAATTGTCAGGTAATC+AGG - chr7_4:46797579-46797598 Msa1157740:CDS 35.0%
TGGCTTATCATTTCTCTACT+TGG + chr7_4:46797653-46797672 None:intergenic 35.0%
ATGTCTGATGATCCTGAAAT+AGG + chr7_4:46797788-46797807 None:intergenic 35.0%
! AAATTTGAGGAAAGAAGCAC+AGG - chr7_4:46797862-46797881 Msa1157740:intron 35.0%
AGGGGTCTCTCAATATAAAA+TGG - chr7_4:46797904-46797923 Msa1157740:CDS 35.0%
GATTTCATTTGGATGACAGT+TGG + chr7_4:46798027-46798046 None:intergenic 35.0%
ACTGTCATCCAAATGAAATC+TGG - chr7_4:46798027-46798046 Msa1157740:intron 35.0%
CTGTCATCCAAATGAAATCT+GGG - chr7_4:46798028-46798047 Msa1157740:intron 35.0%
ACTTCATCCCAGATTTCATT+TGG + chr7_4:46798038-46798057 None:intergenic 35.0%
CTCTGTTTCATCATGTATTG+CGG - chr7_4:46798095-46798114 Msa1157740:CDS 35.0%
AAAGAATCATAGTTCCATCG+AGG - chr7_4:46798132-46798151 Msa1157740:CDS 35.0%
AAGAATCATAGTTCCATCGA+GGG - chr7_4:46798133-46798152 Msa1157740:CDS 35.0%
GTACGAGTGATTTATACTCA+AGG - chr7_4:46798189-46798208 Msa1157740:CDS 35.0%
! TGATTTCTAGATCTCTACCA+TGG + chr7_4:46798219-46798238 None:intergenic 35.0%
GTCTATCTAAACCTGAAAAG+AGG + chr7_4:46798277-46798296 None:intergenic 35.0%
GCTGAAGAAAGAATTATCTG+AGG - chr7_4:46798326-46798345 Msa1157740:intron 35.0%
AGACTTCATTCCAGTTCCTT+TGG + chr7_4:46797236-46797255 None:intergenic 40.0%
TTCAGTGTATCCTGGATCAA+CGG + chr7_4:46797308-46797327 None:intergenic 40.0%
TTGATCCAGGATACACTGAA+TGG - chr7_4:46797308-46797327 Msa1157740:three_prime_UTR 40.0%
AAAGGACACAATCCACTTCA+AGG - chr7_4:46797458-46797477 Msa1157740:CDS 40.0%
TAGTATGCTCTTCCTTGAAG+TGG + chr7_4:46797473-46797492 None:intergenic 40.0%
!! CCAACTTCTAGAATGTCTTG+GGG - chr7_4:46797493-46797512 Msa1157740:CDS 40.0%
GAGAAAGAGTTCAGCTGATA+AGG - chr7_4:46797697-46797716 Msa1157740:CDS 40.0%
AGGACAGTTTGGCAATTGTA+AGG - chr7_4:46797730-46797749 Msa1157740:CDS 40.0%
AGTTTGGCAATTGTAAGGTG+TGG - chr7_4:46797735-46797754 Msa1157740:CDS 40.0%
GTTTGGCAATTGTAAGGTGT+GGG - chr7_4:46797736-46797755 Msa1157740:CDS 40.0%
TTTGGCAATTGTAAGGTGTG+GGG - chr7_4:46797737-46797756 Msa1157740:CDS 40.0%
! AAGAAGCACAGGTTCACTAT+AGG - chr7_4:46797873-46797892 Msa1157740:intron 40.0%
TTCACTATAGGCAGATGGAA+GGG - chr7_4:46797885-46797904 Msa1157740:intron 40.0%
GAGACACTCCTTAAAATCTG+AGG - chr7_4:46797958-46797977 Msa1157740:CDS 40.0%
ATTTGGATGACAGTTGGTTG+TGG + chr7_4:46798021-46798040 None:intergenic 40.0%
ATGAAACAGAGGAGCTATTG+AGG + chr7_4:46798086-46798105 None:intergenic 40.0%
CGCAATACATGATGAAACAG+AGG + chr7_4:46798097-46798116 None:intergenic 40.0%
! AGTTTGATGTGCCTCTTTTC+AGG - chr7_4:46798263-46798282 Msa1157740:intron 40.0%
AGACTTCATTCCAGTTCCTT+TGG + chr7_4:46797236-46797255 None:intergenic 40.0%
TTCAGTGTATCCTGGATCAA+CGG + chr7_4:46797308-46797327 None:intergenic 40.0%
TTGATCCAGGATACACTGAA+TGG - chr7_4:46797308-46797327 Msa1157740:three_prime_UTR 40.0%
AAAGGACACAATCCACTTCA+AGG - chr7_4:46797458-46797477 Msa1157740:CDS 40.0%
TAGTATGCTCTTCCTTGAAG+TGG + chr7_4:46797473-46797492 None:intergenic 40.0%
!! CCAACTTCTAGAATGTCTTG+GGG - chr7_4:46797493-46797512 Msa1157740:CDS 40.0%
GAGAAAGAGTTCAGCTGATA+AGG - chr7_4:46797697-46797716 Msa1157740:CDS 40.0%
AGGACAGTTTGGCAATTGTA+AGG - chr7_4:46797730-46797749 Msa1157740:CDS 40.0%
AGTTTGGCAATTGTAAGGTG+TGG - chr7_4:46797735-46797754 Msa1157740:CDS 40.0%
GTTTGGCAATTGTAAGGTGT+GGG - chr7_4:46797736-46797755 Msa1157740:CDS 40.0%
TTTGGCAATTGTAAGGTGTG+GGG - chr7_4:46797737-46797756 Msa1157740:CDS 40.0%
! AAGAAGCACAGGTTCACTAT+AGG - chr7_4:46797873-46797892 Msa1157740:intron 40.0%
TTCACTATAGGCAGATGGAA+GGG - chr7_4:46797885-46797904 Msa1157740:intron 40.0%
GAGACACTCCTTAAAATCTG+AGG - chr7_4:46797958-46797977 Msa1157740:CDS 40.0%
ATTTGGATGACAGTTGGTTG+TGG + chr7_4:46798021-46798040 None:intergenic 40.0%
ATGAAACAGAGGAGCTATTG+AGG + chr7_4:46798086-46798105 None:intergenic 40.0%
CGCAATACATGATGAAACAG+AGG + chr7_4:46798097-46798116 None:intergenic 40.0%
! AGTTTGATGTGCCTCTTTTC+AGG - chr7_4:46798263-46798282 Msa1157740:intron 40.0%
TATGGTTTCACCGTTGATCC+AGG - chr7_4:46797295-46797314 Msa1157740:three_prime_UTR 45.0%
ATCCAGGATACACTGAATGG+TGG - chr7_4:46797311-46797330 Msa1157740:three_prime_UTR 45.0%
TCCAGGATACACTGAATGGT+GGG - chr7_4:46797312-46797331 Msa1157740:three_prime_UTR 45.0%
CAAGATACTTCTCTGCTCCT+AGG - chr7_4:46797435-46797454 Msa1157740:CDS 45.0%
TACTTCTCTGCTCCTAGGAA+AGG - chr7_4:46797440-46797459 Msa1157740:CDS 45.0%
!! AGTGGATTGTGTCCTTTCCT+AGG + chr7_4:46797455-46797474 None:intergenic 45.0%
! CCCCAAGACATTCTAGAAGT+TGG + chr7_4:46797496-46797515 None:intergenic 45.0%
AAGAGTTCAGCTGATAAGGC+TGG - chr7_4:46797701-46797720 Msa1157740:CDS 45.0%
AATGTGGACCCAGACAAAAG+CGG - chr7_4:46797761-46797780 Msa1157740:CDS 45.0%
!! AAATAGGCCCGCTTTTGTCT+GGG + chr7_4:46797772-46797791 None:intergenic 45.0%
ACAGGTTCACTATAGGCAGA+TGG - chr7_4:46797880-46797899 Msa1157740:intron 45.0%
GTTCACTATAGGCAGATGGA+AGG - chr7_4:46797884-46797903 Msa1157740:intron 45.0%
TCACTATAGGCAGATGGAAG+GGG - chr7_4:46797886-46797905 Msa1157740:intron 45.0%
TATGGTTTCACCGTTGATCC+AGG - chr7_4:46797295-46797314 Msa1157740:three_prime_UTR 45.0%
ATCCAGGATACACTGAATGG+TGG - chr7_4:46797311-46797330 Msa1157740:three_prime_UTR 45.0%
TCCAGGATACACTGAATGGT+GGG - chr7_4:46797312-46797331 Msa1157740:three_prime_UTR 45.0%
CAAGATACTTCTCTGCTCCT+AGG - chr7_4:46797435-46797454 Msa1157740:CDS 45.0%
TACTTCTCTGCTCCTAGGAA+AGG - chr7_4:46797440-46797459 Msa1157740:CDS 45.0%
!! AGTGGATTGTGTCCTTTCCT+AGG + chr7_4:46797455-46797474 None:intergenic 45.0%
! CCCCAAGACATTCTAGAAGT+TGG + chr7_4:46797496-46797515 None:intergenic 45.0%
AAGAGTTCAGCTGATAAGGC+TGG - chr7_4:46797701-46797720 Msa1157740:CDS 45.0%
AATGTGGACCCAGACAAAAG+CGG - chr7_4:46797761-46797780 Msa1157740:CDS 45.0%
!! AAATAGGCCCGCTTTTGTCT+GGG + chr7_4:46797772-46797791 None:intergenic 45.0%
ACAGGTTCACTATAGGCAGA+TGG - chr7_4:46797880-46797899 Msa1157740:intron 45.0%
GTTCACTATAGGCAGATGGA+AGG - chr7_4:46797884-46797903 Msa1157740:intron 45.0%
TCACTATAGGCAGATGGAAG+GGG - chr7_4:46797886-46797905 Msa1157740:intron 45.0%
!! CAAGGTATTGTACTGCGTCG+AGG - chr7_4:46797208-46797227 Msa1157740:three_prime_UTR 50.0%
ACCCACCATTCAGTGTATCC+TGG + chr7_4:46797316-46797335 None:intergenic 50.0%
ACTCCCCAATGAGATCCAAG+AGG - chr7_4:46797606-46797625 Msa1157740:CDS 50.0%
CCTCCTCTTGGATCTCATTG+GGG + chr7_4:46797612-46797631 None:intergenic 50.0%
GCCTCCTCTTGGATCTCATT+GGG + chr7_4:46797613-46797632 None:intergenic 50.0%
TGCCTCCTCTTGGATCTCAT+TGG + chr7_4:46797614-46797633 None:intergenic 50.0%
AGTTCAGCTGATAAGGCTGG+TGG - chr7_4:46797704-46797723 Msa1157740:CDS 50.0%
GCTGATAAGGCTGGTGGTAA+AGG - chr7_4:46797710-46797729 Msa1157740:CDS 50.0%
GCTGGTGGTAAAGGACAGTT+TGG - chr7_4:46797719-46797738 Msa1157740:CDS 50.0%
TTGTAAGGTGTGGGGCAATG+TGG - chr7_4:46797745-46797764 Msa1157740:CDS 50.0%
ATGTGGACCCAGACAAAAGC+GGG - chr7_4:46797762-46797781 Msa1157740:CDS 50.0%
!! GAAATAGGCCCGCTTTTGTC+TGG + chr7_4:46797773-46797792 None:intergenic 50.0%
GACAAAAGCGGGCCTATTTC+AGG - chr7_4:46797773-46797792 Msa1157740:CDS 50.0%
! ACTCTCACGTTTTCCCTCGA+TGG + chr7_4:46798149-46798168 None:intergenic 50.0%
!! CAAGGTATTGTACTGCGTCG+AGG - chr7_4:46797208-46797227 Msa1157740:three_prime_UTR 50.0%
ACCCACCATTCAGTGTATCC+TGG + chr7_4:46797316-46797335 None:intergenic 50.0%
ACTCCCCAATGAGATCCAAG+AGG - chr7_4:46797606-46797625 Msa1157740:CDS 50.0%
CCTCCTCTTGGATCTCATTG+GGG + chr7_4:46797612-46797631 None:intergenic 50.0%
GCCTCCTCTTGGATCTCATT+GGG + chr7_4:46797613-46797632 None:intergenic 50.0%
TGCCTCCTCTTGGATCTCAT+TGG + chr7_4:46797614-46797633 None:intergenic 50.0%
AGTTCAGCTGATAAGGCTGG+TGG - chr7_4:46797704-46797723 Msa1157740:CDS 50.0%
GCTGATAAGGCTGGTGGTAA+AGG - chr7_4:46797710-46797729 Msa1157740:CDS 50.0%
GCTGGTGGTAAAGGACAGTT+TGG - chr7_4:46797719-46797738 Msa1157740:CDS 50.0%
TTGTAAGGTGTGGGGCAATG+TGG - chr7_4:46797745-46797764 Msa1157740:CDS 50.0%
ATGTGGACCCAGACAAAAGC+GGG - chr7_4:46797762-46797781 Msa1157740:CDS 50.0%
!! GAAATAGGCCCGCTTTTGTC+TGG + chr7_4:46797773-46797792 None:intergenic 50.0%
GACAAAAGCGGGCCTATTTC+AGG - chr7_4:46797773-46797792 Msa1157740:CDS 50.0%
! ACTCTCACGTTTTCCCTCGA+TGG + chr7_4:46798149-46798168 None:intergenic 50.0%
CCCCAATGAGATCCAAGAGG+AGG - chr7_4:46797609-46797628 Msa1157740:CDS 55.0%
GATCCAAGAGGAGGCAAGAC+TGG - chr7_4:46797618-46797637 Msa1157740:CDS 55.0%
TGACCAGTCTTGCCTCCTCT+TGG + chr7_4:46797624-46797643 None:intergenic 55.0%
GTATTGCGGCTAGCAGAGCA+TGG - chr7_4:46798109-46798128 Msa1157740:CDS 55.0%
CCCCAATGAGATCCAAGAGG+AGG - chr7_4:46797609-46797628 Msa1157740:CDS 55.0%
GATCCAAGAGGAGGCAAGAC+TGG - chr7_4:46797618-46797637 Msa1157740:CDS 55.0%
TGACCAGTCTTGCCTCCTCT+TGG + chr7_4:46797624-46797643 None:intergenic 55.0%
GTATTGCGGCTAGCAGAGCA+TGG - chr7_4:46798109-46798128 Msa1157740:CDS 55.0%
! GTACTGCGTCGAGGTGCCAA+AGG - chr7_4:46797217-46797236 Msa1157740:three_prime_UTR 60.0%
! CGTCGAGGTGCCAAAGGAAC+TGG - chr7_4:46797223-46797242 Msa1157740:three_prime_UTR 60.0%
GCCAAGCACATGCAGCAGCT+TGG - chr7_4:46797669-46797688 Msa1157740:CDS 60.0%
GCCAAGCTGCTGCATGTGCT+TGG + chr7_4:46797673-46797692 None:intergenic 60.0%
! GTACTGCGTCGAGGTGCCAA+AGG - chr7_4:46797217-46797236 Msa1157740:three_prime_UTR 60.0%
! CGTCGAGGTGCCAAAGGAAC+TGG - chr7_4:46797223-46797242 Msa1157740:three_prime_UTR 60.0%
GCCAAGCACATGCAGCAGCT+TGG - chr7_4:46797669-46797688 Msa1157740:CDS 60.0%
GCCAAGCTGCTGCATGTGCT+TGG + chr7_4:46797673-46797692 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46796997 46798420 46796997 ID=Msa1157740;Name=Msa1157740
chr7_4 mRNA 46796997 46798420 46796997 ID=Msa1157740-mRNA-1;Parent=Msa1157740;Name=Msa1157740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.75|1|1|0.75|4|435|226
chr7_4 exon 46796997 46797824 46796997 ID=Msa1157740-mRNA-1:exon:12365;Parent=Msa1157740-mRNA-1
chr7_4 exon 46797903 46797984 46797903 ID=Msa1157740-mRNA-1:exon:12364;Parent=Msa1157740-mRNA-1
chr7_4 exon 46798088 46798236 46798088 ID=Msa1157740-mRNA-1:exon:12363;Parent=Msa1157740-mRNA-1
chr7_4 exon 46798364 46798420 46798364 ID=Msa1157740-mRNA-1:exon:12362;Parent=Msa1157740-mRNA-1
chr7_4 CDS 46798364 46798420 46798364 ID=Msa1157740-mRNA-1:cds;Parent=Msa1157740-mRNA-1
chr7_4 CDS 46798088 46798236 46798088 ID=Msa1157740-mRNA-1:cds;Parent=Msa1157740-mRNA-1
chr7_4 CDS 46797903 46797984 46797903 ID=Msa1157740-mRNA-1:cds;Parent=Msa1157740-mRNA-1
chr7_4 CDS 46797432 46797824 46797432 ID=Msa1157740-mRNA-1:cds;Parent=Msa1157740-mRNA-1
chr7_4 three_prime_UTR 46796997 46797431 46796997 ID=Msa1157740-mRNA-1:three_prime_utr;Parent=Msa1157740-mRNA-1
Gene Sequence

>Msa1157740

GATGAGGTACTCATAATAAAAAGTCTGACACACAGAGAAATCAATGCAGTTATAAAGACTCTACCAAATCCAGTCTATCTCTTTCAAGGTATTGTACTGCGTCGAGGTGCCAAAGGAACTGGAATGAAGTCTATTGAATTAGCACTCTCCATGTGTGATATTGTTGATATATATGGTTTCACCGTTGATCCAGGATACACTGAATGGACAAGATACTTCTCTGCTCCTAGGAAAGGACACAATCCACTTCAAGGAAGAGCATACTACCAACTTCTAGAATGTCTTGGGGTAATCAGGATTCACTCCCCAATGAGATCCAAGAGGAGGCAAGACTGGTCAGATGTGCCAAGTAGAGAAATGATAAGCCAAGCACATGCAGCAGCTTGGCACTTGAGAAAGAGTTCAGCTGATAAGGCTGGTGGTAAAGGACAGTTTGGCAATTGTAAGGTGTGGGGCAATGTGGACCCAGACAAAAGCGGGCCTATTTCAGGATCATCAGACATGAGTGATGTCAGAAAGTATTCAAATTATAAAAAATGGGAAGTCATGCCTTTGAAAAATTTGAGGAAAGAAGCACAGGTTCACTATAGGCAGATGGAAGGGGTCTCTCAATATAAAATGGATGGCAATAAGTTGGACGATCTAGTTTGTGTGAGACACTCCTTAAAATCTGAGGTGTAA

Protein sequence

>Msa1157740

DEVLIIKSLTHREINAVIKTLPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSAPRKGHNPLQGRAYYQLLECLGVIRIHSPMRSKRRQDWSDVPSREMISQAHAAAWHLRKSSADKAGGKGQFGNCKVWGNVDPDKSGPISGSSDMSDVRKYSNYKKWEVMPLKNLRKEAQVHYRQMEGVSQYKMDGNKLDDLVCVRHSLKSEV*