AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0767220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0767220 MtrunA17_Chr5g0418911 99.038 104 1 0 29 132 46 149 2.11e-68 210
Msa0767220 MtrunA17_Chr8g0369371 48.039 102 50 3 26 126 78 177 3.97e-26 97.8
Msa0767220 MtrunA17_Chr1g0212851 46.667 105 52 3 29 132 105 206 1.36e-24 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0767220 AT1G26520.1 89.423 104 11 0 29 132 58 161 3.24e-63 197
Msa0767220 AT1G15730.1 47.619 105 51 3 29 132 108 209 1.37e-25 100
Msa0767220 AT1G80480.1 48.571 105 50 3 29 132 105 206 6.10e-25 98.6

Find 30 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTTGGCATCTATTCTT+TGG 0.207860 5_2:+30002233 Msa0767220:CDS
AATGAGTTTGGTGAGGAAAT+TGG 0.300166 5_2:+30001556 Msa0767220:CDS
TTGCACTGTTAAACATAGTT+TGG 0.335183 5_2:+30001660 Msa0767220:CDS
GCTGTGATATTGAATGAGTT+TGG 0.371555 5_2:+30001544 Msa0767220:CDS
TGTGGCTAATCCAGCACCTT+TGG 0.381484 5_2:+30002219 Msa0767220:CDS
TTTGGCATCTATTCTTTGGT+TGG 0.414831 5_2:+30002237 Msa0767220:CDS
TTCTCTGCACAAGCTGCTCA+AGG 0.418476 5_2:-30001690 None:intergenic
TAGGCTAGACCATATATTGC+TGG 0.419326 5_2:+30002186 Msa0767220:intron
AGAATAGATGCCAAAGGTGC+TGG 0.420889 5_2:-30002229 None:intergenic
TCAGAAAGTATGTTAGTAAT+GGG 0.425953 5_2:-29997383 None:intergenic
CAGTAGTTTCCAGCAATATA+TGG 0.431248 5_2:-30002195 None:intergenic
GTGGCGCAGTTGTTGAAGAA+TGG 0.444090 5_2:+30001611 Msa0767220:CDS
GAAAGAGCATTGATAAATGA+AGG 0.462576 5_2:+30001583 Msa0767220:CDS
TCTTTGGTTGGATGAACAGT+TGG 0.479469 5_2:+30002249 Msa0767220:CDS
GTCAGAAAGTATGTTAGTAA+TGG 0.480043 5_2:-29997384 None:intergenic
GAATGGGTTGAACTTGCTAA+TGG 0.500533 5_2:+30001628 Msa0767220:CDS
CATATATTGCTGGAAACTAC+TGG 0.512907 5_2:+30002196 Msa0767220:CDS
TGGCGCAGTTGTTGAAGAAT+GGG 0.530477 5_2:+30001612 Msa0767220:CDS
TCTCTGCACAAGCTGCTCAA+GGG 0.549355 5_2:-30001689 None:intergenic
TGAACTCTCAACATGGGAAG+AGG 0.549391 5_2:+30001518 Msa0767220:CDS
CATATATTGAACTCTCAACA+TGG 0.555523 5_2:+30001511 Msa0767220:CDS
TTGATAAATGAAGGGGAAAG+TGG 0.557084 5_2:+30001592 Msa0767220:CDS
AAAGAGCATTGATAAATGAA+GGG 0.594588 5_2:+30001584 Msa0767220:CDS
AAGAGCATTGATAAATGAAG+GGG 0.611247 5_2:+30001585 Msa0767220:CDS
ATATATTGAACTCTCAACAT+GGG 0.629606 5_2:+30001512 Msa0767220:CDS
AGCTTGTGCAGAGAAAAGAA+AGG 0.645456 5_2:+30001698 Msa0767220:CDS
GTTTGGTGAGGAAATTGGAG+TGG 0.654078 5_2:+30001561 Msa0767220:CDS
AACCAAAGAATAGATGCCAA+AGG 0.660580 5_2:-30002235 None:intergenic
ATTGCTGGAAACTACTGGTG+TGG 0.682013 5_2:+30002201 Msa0767220:CDS
GATATTGAATGAGTTTGGTG+AGG 0.685395 5_2:+30001549 Msa0767220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAACATAAATTG+TGG - chr5_2:29998475-29998494 None:intergenic 10.0%
!! AAAGAAAAAAGAAAATTACA+AGG - chr5_2:29998379-29998398 None:intergenic 15.0%
!!! AAAATCGTTTTAAATTTCTA+TGG + chr5_2:29998598-29998617 Msa0767220:intron 15.0%
!!! AAATCGTTTTAAATTTCTAT+GGG + chr5_2:29998599-29998618 Msa0767220:intron 15.0%
!! AACTTATTATTAAAAGATGT+TGG + chr5_2:30000987-30001006 Msa0767220:intron 15.0%
!! TTATATACATAAGCAATAAT+AGG - chr5_2:30001847-30001866 None:intergenic 15.0%
!! TATTTATAAGAGATTCAAAA+GGG - chr5_2:30002099-30002118 None:intergenic 15.0%
!!! TAGTACAATTAAACATTTTT+AGG + chr5_2:30002150-30002169 Msa0767220:intron 15.0%
!! ACTTACGAAATAAAATACAT+GGG - chr5_2:29998908-29998927 None:intergenic 20.0%
!!! ATTTGTCCTTTAAAGATTTT+TGG + chr5_2:29999224-29999243 Msa0767220:intron 20.0%
!!! ATAATACCTCTTTAACTTTT+CGG + chr5_2:29999375-29999394 Msa0767220:intron 20.0%
!! ATTTAGATGAAAATAAGGAT+GGG - chr5_2:29999454-29999473 None:intergenic 20.0%
!! AATTTAGATGAAAATAAGGA+TGG - chr5_2:29999455-29999474 None:intergenic 20.0%
!! ACAGAATTTAGATGAAAATA+AGG - chr5_2:29999459-29999478 None:intergenic 20.0%
!!! ATTTTCATCTAAATTCTGTA+AGG + chr5_2:29999460-29999479 Msa0767220:intron 20.0%
!!! TTTTCATCTAAATTCTGTAA+GGG + chr5_2:29999461-29999480 Msa0767220:intron 20.0%
!!! AAATTCTAATTCCTTCATTT+TGG + chr5_2:30000615-30000634 Msa0767220:intron 20.0%
!!! AATGCATATTTGAATCATTT+TGG + chr5_2:30000723-30000742 Msa0767220:intron 20.0%
!! TCTAAAAAAAACAATCTTAC+AGG + chr5_2:30001339-30001358 Msa0767220:intron 20.0%
!! CTAAAAAAAACAATCTTACA+GGG + chr5_2:30001340-30001359 Msa0767220:intron 20.0%
!!! TTTTCATATAAACTATAAGC+TGG + chr5_2:30001892-30001911 Msa0767220:intron 20.0%
!! ATTTATAAGAGATTCAAAAG+GGG - chr5_2:30002098-30002117 None:intergenic 20.0%
!! CTATTTATAAGAGATTCAAA+AGG - chr5_2:30002100-30002119 None:intergenic 20.0%
!! TCAGAAAGTATGTTAGTAAT+GGG - chr5_2:29997386-29997405 None:intergenic 25.0%
! AAATCAAAAGTAGATTCAGT+AGG + chr5_2:29998736-29998755 Msa0767220:intron 25.0%
! CTTACGAAATAAAATACATG+GGG - chr5_2:29998907-29998926 None:intergenic 25.0%
! GACTTACGAAATAAAATACA+TGG - chr5_2:29998909-29998928 None:intergenic 25.0%
! ATGTAAGCAAACATATATTG+AGG + chr5_2:29999174-29999193 Msa0767220:intron 25.0%
! CCAAATCCAAAAATCTTTAA+AGG - chr5_2:29999233-29999252 None:intergenic 25.0%
!!! CCTTTAAAGATTTTTGGATT+TGG + chr5_2:29999230-29999249 Msa0767220:intron 25.0%
! GTATATACAACACAACTAAA+AGG - chr5_2:29999323-29999342 None:intergenic 25.0%
!! GTTTGATGTTCAAATCTTTT+AGG + chr5_2:29999957-29999976 Msa0767220:intron 25.0%
! GAAGGAACTTTATATAAACA+AGG - chr5_2:30000477-30000496 None:intergenic 25.0%
! GGCAATATTATTAAACTGTA+GGG - chr5_2:30000851-30000870 None:intergenic 25.0%
! AGGAAAATAAAGTAAGAACT+GGG - chr5_2:30000872-30000891 None:intergenic 25.0%
! AAGGAAAATAAAGTAAGAAC+TGG - chr5_2:30000873-30000892 None:intergenic 25.0%
! ATGCAAATTGCAAAAGAAAA+AGG - chr5_2:30000892-30000911 None:intergenic 25.0%
!! CTCTTTAAAAAGACATTATC+CGG + chr5_2:30001095-30001114 Msa0767220:intron 25.0%
! TAAACTTCATTATCCATCAA+TGG - chr5_2:30001128-30001147 None:intergenic 25.0%
! ACTCCATATTACAAAATCAT+TGG - chr5_2:30001456-30001475 None:intergenic 25.0%
! ATATATTGAACTCTCAACAT+GGG + chr5_2:30001512-30001531 Msa0767220:CDS 25.0%
!!! AAAGAGCATTGATAAATGAA+GGG + chr5_2:30001584-30001603 Msa0767220:CDS 25.0%
! AGCACTAAAAATATAAACAC+CGG + chr5_2:30001752-30001771 Msa0767220:intron 25.0%
! CATAAGCAATAATAGGATAA+GGG - chr5_2:30001840-30001859 None:intergenic 25.0%
! ACATAAGCAATAATAGGATA+AGG - chr5_2:30001841-30001860 None:intergenic 25.0%
!!! TTTATTTCTATAAGCTCTCT+GGG - chr5_2:30001931-30001950 None:intergenic 25.0%
!!! ATTTATTTCTATAAGCTCTC+TGG - chr5_2:30001932-30001951 None:intergenic 25.0%
! TTATAAATAGATGCAGTGTT+CGG + chr5_2:30002110-30002129 Msa0767220:intron 25.0%
!! TTTAGGTATTTTGTGTTTGT+AGG + chr5_2:30002167-30002186 Msa0767220:intron 25.0%
! GTCAGAAAGTATGTTAGTAA+TGG - chr5_2:29997387-29997406 None:intergenic 30.0%
TTTGTTTAGAGGGACATAAT+TGG + chr5_2:29997498-29997517 Msa0767220:intron 30.0%
TCAGTAAAGGAATTGTTTAG+AGG - chr5_2:29997846-29997865 None:intergenic 30.0%
TCTAAACAATTCCTTTACTG+AGG + chr5_2:29997845-29997864 Msa0767220:intron 30.0%
!!! CATTCATGGTTTTAACAATG+CGG + chr5_2:29998203-29998222 Msa0767220:intron 30.0%
GATTACTCTTAAAACTTACG+AGG - chr5_2:29998642-29998661 None:intergenic 30.0%
AAGTCAAACATCTATTACGA+GGG - chr5_2:29998673-29998692 None:intergenic 30.0%
TAAGTCAAACATCTATTACG+AGG - chr5_2:29998674-29998693 None:intergenic 30.0%
TGACTTAGATGTATACATGT+AGG + chr5_2:29998687-29998706 Msa0767220:intron 30.0%
GACTTAGATGTATACATGTA+GGG + chr5_2:29998688-29998707 Msa0767220:intron 30.0%
TAACAAAGTAATGACTGTCA+GGG - chr5_2:29998779-29998798 None:intergenic 30.0%
TTAACAAAGTAATGACTGTC+AGG - chr5_2:29998780-29998799 None:intergenic 30.0%
TGTTAAAAATGAGTGATGAC+TGG + chr5_2:29998794-29998813 Msa0767220:intron 30.0%
TAAAATACATGGGGAAAGAA+GGG - chr5_2:29998898-29998917 None:intergenic 30.0%
ATAAAATACATGGGGAAAGA+AGG - chr5_2:29998899-29998918 None:intergenic 30.0%
! TACTTGTGTGTTATTGTACA+AGG + chr5_2:29998939-29998958 Msa0767220:intron 30.0%
! ACTTGTGTGTTATTGTACAA+GGG + chr5_2:29998940-29998959 Msa0767220:intron 30.0%
GATGTGTTTCGATTGAAAAA+TGG + chr5_2:29999051-29999070 Msa0767220:intron 30.0%
!! AAAGATTTTTGGATTTGGAG+TGG + chr5_2:29999235-29999254 Msa0767220:intron 30.0%
TGAACAGAGTAATTCTTCAT+GGG - chr5_2:29999886-29999905 None:intergenic 30.0%
TAGCCAACTAAAATACATAG+TGG - chr5_2:30000151-30000170 None:intergenic 30.0%
GCTTATAAAGAATATCTGCT+CGG + chr5_2:30000557-30000576 Msa0767220:intron 30.0%
GGAATTAGAATTTGTGTAAG+TGG - chr5_2:30000608-30000627 None:intergenic 30.0%
AGCTAAGAAAGGTTCATATT+CGG + chr5_2:30000774-30000793 Msa0767220:intron 30.0%
GGGCAATATTATTAAACTGT+AGG - chr5_2:30000852-30000871 None:intergenic 30.0%
!! CGGATAATGTCTTTTTAAAG+AGG - chr5_2:30001097-30001116 None:intergenic 30.0%
!! GGAGTGTTTACACTAATTTT+TGG - chr5_2:30001156-30001175 None:intergenic 30.0%
!! NNTGTATGTGAGTTTTCAAG+TGG + chr5_2:30001282-30001301 Msa0767220:intron 30.0%
AACCTTTGTAACTGTTATAC+TGG + chr5_2:30001410-30001429 Msa0767220:intron 30.0%
TTCCAGTATAACAGTTACAA+AGG - chr5_2:30001415-30001434 None:intergenic 30.0%
!! TGTAATATGGAGTTCTGAAT+TGG + chr5_2:30001463-30001482 Msa0767220:intron 30.0%
CATATATTGAACTCTCAACA+TGG + chr5_2:30001511-30001530 Msa0767220:CDS 30.0%
!! GAAAGAGCATTGATAAATGA+AGG + chr5_2:30001583-30001602 Msa0767220:CDS 30.0%
!! AAGAGCATTGATAAATGAAG+GGG + chr5_2:30001585-30001604 Msa0767220:CDS 30.0%
TTGCACTGTTAAACATAGTT+TGG + chr5_2:30001660-30001679 Msa0767220:CDS 30.0%
AAACACTTGTGAGATTCTTA+GGG - chr5_2:30002000-30002019 None:intergenic 30.0%
TAAACACTTGTGAGATTCTT+AGG - chr5_2:30002001-30002020 None:intergenic 30.0%
! CATTTTTCCTGCGAACAAAA+GGG - chr5_2:29997409-29997428 None:intergenic 35.0%
! CAGGAAAAGGTTTGTTTAGA+GGG + chr5_2:29997488-29997507 Msa0767220:intron 35.0%
!!! TGTCACTTTCTTCCTTTTGA+GGG - chr5_2:29997589-29997608 None:intergenic 35.0%
TCATGAAAAGGAAGGATTGT+GGG - chr5_2:29997719-29997738 None:intergenic 35.0%
ATTCAGAGTCACTCATGAAA+AGG - chr5_2:29997731-29997750 None:intergenic 35.0%
AATCTTTCAGCCTTTCTACT+CGG - chr5_2:29997967-29997986 None:intergenic 35.0%
CGCATTGTTAAAACCATGAA+TGG - chr5_2:29998205-29998224 None:intergenic 35.0%
ATCTTCTTCTTCTTCTTCAC+GGG - chr5_2:29998325-29998344 None:intergenic 35.0%
CATCTTCTTCTTCTTCTTCA+CGG - chr5_2:29998326-29998345 None:intergenic 35.0%
GTGAAGAAGAAGAAGAAGAT+GGG + chr5_2:29998325-29998344 Msa0767220:intron 35.0%
AACAAAGTAATGACTGTCAG+GGG - chr5_2:29998778-29998797 None:intergenic 35.0%
! CTTGTGTGTTATTGTACAAG+GGG + chr5_2:29998941-29998960 Msa0767220:intron 35.0%
GTGTTTCGATTGAAAAATGG+TGG + chr5_2:29999054-29999073 Msa0767220:intron 35.0%
!! AAGAGTGTTTAGTTCGTTTG+CGG + chr5_2:29999294-29999313 Msa0767220:intron 35.0%
ATGGAAACTCATTGCTAACT+GGG - chr5_2:29999491-29999510 None:intergenic 35.0%
AATGGAAACTCATTGCTAAC+TGG - chr5_2:29999492-29999511 None:intergenic 35.0%
ACTCCTTCTGATTTCTTTGA+AGG + chr5_2:29999518-29999537 Msa0767220:intron 35.0%
ATAAAACGAGAAGTCGAAGT+TGG - chr5_2:29999553-29999572 None:intergenic 35.0%
GTGAACAGAGTAATTCTTCA+TGG - chr5_2:29999887-29999906 None:intergenic 35.0%
! TTCAACTTCGATCCATTTTG+TGG + chr5_2:30000110-30000129 Msa0767220:intron 35.0%
CCAACTAAAATACATAGTGG+TGG - chr5_2:30000148-30000167 None:intergenic 35.0%
!!! CCACCACTATGTATTTTAGT+TGG + chr5_2:30000145-30000164 Msa0767220:intron 35.0%
CTAATTGTGACAAATGCCAA+AGG - chr5_2:30000281-30000300 None:intergenic 35.0%
TTTATAAGCTAGCAACCACA+TGG - chr5_2:30000546-30000565 None:intergenic 35.0%
CTAATGATTGCTAGAGACAT+GGG - chr5_2:30000751-30000770 None:intergenic 35.0%
GAATATGAACCTTTCTTAGC+TGG - chr5_2:30000775-30000794 None:intergenic 35.0%
TAAGAAAGGTTCATATTCGG+CGG + chr5_2:30000777-30000796 Msa0767220:intron 35.0%
AGGGAAATGTAAAGAGTGAT+TGG - chr5_2:30000832-30000851 None:intergenic 35.0%
TCATTATCCATCAATGGCTT+AGG - chr5_2:30001122-30001141 None:intergenic 35.0%
! TTTTTGGATGATAGATGACG+TGG - chr5_2:30001314-30001333 None:intergenic 35.0%
ATTACAAAATCATTGGCCGA+GGG - chr5_2:30001449-30001468 None:intergenic 35.0%
TATTACAAAATCATTGGCCG+AGG - chr5_2:30001450-30001469 None:intergenic 35.0%
! CGGCCAATGATTTTGTAATA+TGG + chr5_2:30001450-30001469 Msa0767220:intron 35.0%
GCTGTGATATTGAATGAGTT+TGG + chr5_2:30001544-30001563 Msa0767220:CDS 35.0%
! GATATTGAATGAGTTTGGTG+AGG + chr5_2:30001549-30001568 Msa0767220:CDS 35.0%
! AATGAGTTTGGTGAGGAAAT+TGG + chr5_2:30001556-30001575 Msa0767220:CDS 35.0%
TTGATAAATGAAGGGGAAAG+TGG + chr5_2:30001592-30001611 Msa0767220:CDS 35.0%
CCTAAGTGTAATTATGAGTC+CGG - chr5_2:30001774-30001793 None:intergenic 35.0%
CAGTAGTTTCCAGCAATATA+TGG - chr5_2:30002198-30002217 None:intergenic 35.0%
CATATATTGCTGGAAACTAC+TGG + chr5_2:30002196-30002215 Msa0767220:CDS 35.0%
AACCAAAGAATAGATGCCAA+AGG - chr5_2:30002238-30002257 None:intergenic 35.0%
TTTGGCATCTATTCTTTGGT+TGG + chr5_2:30002237-30002256 Msa0767220:CDS 35.0%
! GCATTTTTCCTGCGAACAAA+AGG - chr5_2:29997410-29997429 None:intergenic 40.0%
GAAGAAATCGAGCAAGAAGT+TGG + chr5_2:29997449-29997468 Msa0767220:intron 40.0%
! AAATCGAGCAAGAAGTTGGT+CGG + chr5_2:29997453-29997472 Msa0767220:intron 40.0%
! GCAGGAAAAGGTTTGTTTAG+AGG + chr5_2:29997487-29997506 Msa0767220:intron 40.0%
!! GTCACTTTCTTCCTTTTGAG+GGG - chr5_2:29997588-29997607 None:intergenic 40.0%
!!! GTGTCACTTTCTTCCTTTTG+AGG - chr5_2:29997590-29997609 None:intergenic 40.0%
AAAGTGACACAAGCGATCAA+AGG + chr5_2:29997600-29997619 Msa0767220:intron 40.0%
CTCATGAAAAGGAAGGATTG+TGG - chr5_2:29997720-29997739 None:intergenic 40.0%
AGAGTCACTCATGAAAAGGA+AGG - chr5_2:29997727-29997746 None:intergenic 40.0%
CATGAGTGACTCTGAATTGA+AGG + chr5_2:29997734-29997753 Msa0767220:intron 40.0%
ACGAACAACATCCTCAGTAA+AGG - chr5_2:29997859-29997878 None:intergenic 40.0%
TACTGAGGATGTTGTTCGTT+CGG + chr5_2:29997860-29997879 Msa0767220:intron 40.0%
AGGCTGAAAGATTACTTCTC+TGG + chr5_2:29997974-29997993 Msa0767220:intron 40.0%
! GAAAAGGAACCTTGTTTGTG+CGG + chr5_2:29998179-29998198 Msa0767220:intron 40.0%
CTCTATTCTCCACTTACTTC+AGG - chr5_2:29998287-29998306 None:intergenic 40.0%
TCTTCTTCTTCTTCTTCACG+GGG - chr5_2:29998324-29998343 None:intergenic 40.0%
CGTGAAGAAGAAGAAGAAGA+TGG + chr5_2:29998324-29998343 Msa0767220:intron 40.0%
! TGATGACGCATAAGCTTAGA+TGG + chr5_2:29998353-29998372 Msa0767220:intron 40.0%
! CAATTTGTCCTTGCTGTAAC+CGG + chr5_2:29998404-29998423 Msa0767220:intron 40.0%
AGTACGATGCTAACCATGAA+AGG - chr5_2:29998452-29998471 None:intergenic 40.0%
AAAGTAGATTCAGTAGGTCG+AGG + chr5_2:29998742-29998761 Msa0767220:intron 40.0%
ATTCAGTAGGTCGAGGATAA+GGG + chr5_2:29998749-29998768 Msa0767220:intron 40.0%
ACAAAGTAATGACTGTCAGG+GGG - chr5_2:29998777-29998796 None:intergenic 40.0%
TCTAACGTATACCTGCCTAA+AGG - chr5_2:29998988-29999007 None:intergenic 40.0%
TTTCTGATGAGCACCTACAA+CGG - chr5_2:29999276-29999295 None:intergenic 40.0%
! AGAGTGTTTAGTTCGTTTGC+GGG + chr5_2:29999295-29999314 Msa0767220:intron 40.0%
GGAATGCCGAAAAGTTAAAG+AGG - chr5_2:29999384-29999403 None:intergenic 40.0%
! TTTTCGGCATTCCAAGTTCT+AGG + chr5_2:29999391-29999410 Msa0767220:intron 40.0%
TTTCGGCATTCCAAGTTCTA+GGG + chr5_2:29999392-29999411 Msa0767220:intron 40.0%
TAGGGATTGAACCCTTTACA+AGG + chr5_2:29999410-29999429 Msa0767220:intron 40.0%
AAAATAAGGATGGGTGCGTA+CGG - chr5_2:29999445-29999464 None:intergenic 40.0%
AAGAAATCAGAAGGAGTCTG+AGG - chr5_2:29999515-29999534 None:intergenic 40.0%
CGTCCTTCAAAGAAATCAGA+AGG - chr5_2:29999524-29999543 None:intergenic 40.0%
AAAGCAAAAACATAGCCGCT+TGG - chr5_2:29999591-29999610 None:intergenic 40.0%
!! CTTTAGCGCTAGCTCTTTTA+GGG + chr5_2:29999607-29999626 Msa0767220:intron 40.0%
TGACGAAATCAGAAGTGAAG+CGG - chr5_2:29999633-29999652 None:intergenic 40.0%
AACTCGCCAATTGTTGAATG+AGG + chr5_2:29999782-29999801 Msa0767220:intron 40.0%
ACTCGCCAATTGTTGAATGA+GGG + chr5_2:29999783-29999802 Msa0767220:intron 40.0%
GGAACTTCATACAGTCCTAT+GGG - chr5_2:29999822-29999841 None:intergenic 40.0%
AGGAACTTCATACAGTCCTA+TGG - chr5_2:29999823-29999842 None:intergenic 40.0%
AGATGAGGCCAAAACTAACT+GGG - chr5_2:29999849-29999868 None:intergenic 40.0%
TAGATGAGGCCAAAACTAAC+TGG - chr5_2:29999850-29999869 None:intergenic 40.0%
TTCTTCATGGGATACGTAGA+AGG - chr5_2:29999874-29999893 None:intergenic 40.0%
! TCTACTTTCCTGTTTGCTAG+TGG + chr5_2:29999911-29999930 Msa0767220:intron 40.0%
! CTACTTTCCTGTTTGCTAGT+GGG + chr5_2:29999912-29999931 Msa0767220:intron 40.0%
GTAGACTTGAAACTTGCGAT+CGG + chr5_2:29999979-29999998 Msa0767220:intron 40.0%
TGAACTGAGTGCCTTAATCT+GGG + chr5_2:30000002-30000021 Msa0767220:intron 40.0%
!! AGAAGCATCCTAGCAAGATT+CGG - chr5_2:30000046-30000065 None:intergenic 40.0%
! GTCTTTAGCTTCCTTTAGCA+TGG + chr5_2:30000308-30000327 Msa0767220:intron 40.0%
TTAGCTTCCTTTAGCATGGT+AGG + chr5_2:30000312-30000331 Msa0767220:intron 40.0%
AAACACATGATGGCATATGC+GGG - chr5_2:30000395-30000414 None:intergenic 40.0%
GAAACACATGATGGCATATG+CGG - chr5_2:30000396-30000415 None:intergenic 40.0%
TGCCATCATGTGTTTCAACA+AGG + chr5_2:30000400-30000419 Msa0767220:intron 40.0%
GCCATCATGTGTTTCAACAA+GGG + chr5_2:30000401-30000420 Msa0767220:intron 40.0%
TCCCTTGTTGAAACACATGA+TGG - chr5_2:30000405-30000424 None:intergenic 40.0%
ACACCACCAATCAAGTAACT+CGG - chr5_2:30000447-30000466 None:intergenic 40.0%
TAAAGTTCCTTCCACCTGTA+AGG + chr5_2:30000485-30000504 Msa0767220:intron 40.0%
ATACAAGAAGTCCTTACAGG+TGG - chr5_2:30000499-30000518 None:intergenic 40.0%
GTCATACAAGAAGTCCTTAC+AGG - chr5_2:30000502-30000521 None:intergenic 40.0%
ACTCGTACAAGCCAAAATGA+AGG - chr5_2:30000629-30000648 None:intergenic 40.0%
!!! TTTTGGCTTGTACGAGTTAG+AGG + chr5_2:30000632-30000651 Msa0767220:intron 40.0%
ATAAGTGTTCCTCCCTTACA+TGG + chr5_2:30000662-30000681 Msa0767220:intron 40.0%
TACAGGCGAATACCATGTAA+GGG - chr5_2:30000677-30000696 None:intergenic 40.0%
TTACAGGCGAATACCATGTA+AGG - chr5_2:30000678-30000697 None:intergenic 40.0%
ATGGTATTCGCCTGTAACTT+GGG + chr5_2:30000681-30000700 Msa0767220:intron 40.0%
CCTAATGATTGCTAGAGACA+TGG - chr5_2:30000752-30000771 None:intergenic 40.0%
CCATGTCTCTAGCAATCATT+AGG + chr5_2:30000749-30000768 Msa0767220:intron 40.0%
ATCATTAGGCCAGCTAAGAA+AGG + chr5_2:30000763-30000782 Msa0767220:intron 40.0%
!! ATATTCGGCGGTGTTATTCA+GGG + chr5_2:30000789-30000808 Msa0767220:intron 40.0%
!! GAATGGGTTGAACTTGCTAA+TGG + chr5_2:30001628-30001647 Msa0767220:CDS 40.0%
AGCTTGTGCAGAGAAAAGAA+AGG + chr5_2:30001698-30001717 Msa0767220:CDS 40.0%
CCGGACTCATAATTACACTT+AGG + chr5_2:30001771-30001790 Msa0767220:intron 40.0%
AGATTCTTAGGGAGAGCTTA+TGG - chr5_2:30001989-30002008 None:intergenic 40.0%
CTCACAAGTGTTTATGCTAG+TGG + chr5_2:30002007-30002026 Msa0767220:intron 40.0%
! CTAGTGGATAAGCTCAGATA+AGG + chr5_2:30002023-30002042 Msa0767220:intron 40.0%
TCAGATAAGGTAATCCAAGC+AGG + chr5_2:30002036-30002055 Msa0767220:intron 40.0%
AGGTCCATTGCATAATGTTG+CGG + chr5_2:30002056-30002075 Msa0767220:intron 40.0%
TGAACCGCAACATTATGCAA+TGG - chr5_2:30002063-30002082 None:intergenic 40.0%
TAGGCTAGACCATATATTGC+TGG + chr5_2:30002186-30002205 Msa0767220:intron 40.0%
CACCTTTGGCATCTATTCTT+TGG + chr5_2:30002233-30002252 Msa0767220:CDS 40.0%
TCTTTGGTTGGATGAACAGT+TGG + chr5_2:30002249-30002268 Msa0767220:CDS 40.0%
! TTTCTGACCCTTTTGTTCGC+AGG + chr5_2:29997399-29997418 Msa0767220:CDS 45.0%
AGGGACATAATTGGTACCTC+TGG + chr5_2:29997507-29997526 Msa0767220:intron 45.0%
CAAAGGAAGAAGAGAACCAG+AGG - chr5_2:29997526-29997545 None:intergenic 45.0%
!! CTCTGGTTCTCTTCTTCCTT+TGG + chr5_2:29997524-29997543 Msa0767220:intron 45.0%
TGGTTCTCTTCTTCCTTTGG+AGG + chr5_2:29997527-29997546 Msa0767220:intron 45.0%
!! CCTTTGGAGGTGTTAGATGA+CGG + chr5_2:29997540-29997559 Msa0767220:intron 45.0%
!! CTTTGGAGGTGTTAGATGAC+GGG + chr5_2:29997541-29997560 Msa0767220:intron 45.0%
AATTCCACCTCACCAACTTG+AGG - chr5_2:29997654-29997673 None:intergenic 45.0%
TGGTGAGGTGGAATTGTTCT+AGG + chr5_2:29997659-29997678 Msa0767220:intron 45.0%
GATTGTGGGTCATACCTATC+AGG - chr5_2:29997705-29997724 None:intergenic 45.0%
ATTCATGACCTGAGAGTCGT+TGG + chr5_2:29997759-29997778 Msa0767220:intron 45.0%
GGGAATCATTAGTGCGATGA+AGG + chr5_2:29997803-29997822 Msa0767220:intron 45.0%
!! TAACCTGGCTGGTTTGAAGA+CGG + chr5_2:29997938-29997957 Msa0767220:intron 45.0%
! TTCTCTGGAGAAGAAAGCTG+AGG + chr5_2:29997989-29998008 Msa0767220:intron 45.0%
CTCGAAATTCCTCTTCTCCT+CGG - chr5_2:29998063-29998082 None:intergenic 45.0%
GTAAAGCCTGAAGATCTGCT+TGG + chr5_2:29998116-29998135 Msa0767220:intron 45.0%
TCCAAACCAAGCAGATCTTC+AGG - chr5_2:29998125-29998144 None:intergenic 45.0%
CAAGATTGAGGAGCTGGAAA+AGG + chr5_2:29998163-29998182 Msa0767220:intron 45.0%
TTCGACTGAAAGCTCGACAT+CGG - chr5_2:29998253-29998272 None:intergenic 45.0%
ATGTCGAGCTTTCAGTCGAA+GGG + chr5_2:29998253-29998272 Msa0767220:intron 45.0%
TCTCCACTTACTTCAGGTAG+CGG - chr5_2:29998281-29998300 None:intergenic 45.0%
TTCTTCTTCTTCACGGGGAA+GGG - chr5_2:29998319-29998338 None:intergenic 45.0%
! ATGAAAGGCGCGCATTGTTA+TGG - chr5_2:29998437-29998456 None:intergenic 45.0%
ATAACAATGCGCGCCTTTCA+TGG + chr5_2:29998436-29998455 Msa0767220:intron 45.0%
GATTCAGTAGGTCGAGGATA+AGG + chr5_2:29998748-29998767 Msa0767220:intron 45.0%
TGATGACTGGTGTCTTTACG+AGG + chr5_2:29998807-29998826 Msa0767220:intron 45.0%
GATGACTGGTGTCTTTACGA+GGG + chr5_2:29998808-29998827 Msa0767220:intron 45.0%
GTCTTTACGAGGGTTGAGAT+CGG + chr5_2:29998818-29998837 Msa0767220:intron 45.0%
GATGGGTGATTCACACATCT+GGG - chr5_2:29999110-29999129 None:intergenic 45.0%
AGGGTTCAATCCCTAGAACT+TGG - chr5_2:29999405-29999424 None:intergenic 45.0%
AAATAAGGATGGGTGCGTAC+GGG - chr5_2:29999444-29999463 None:intergenic 45.0%
GAAACTCATTGCTAACTGGG+AGG - chr5_2:29999488-29999507 None:intergenic 45.0%
ATCAGAAGGAGTCTGAGGAA+TGG - chr5_2:29999510-29999529 None:intergenic 45.0%
CACCCTTCTATTATGCCAAG+CGG + chr5_2:29999573-29999592 Msa0767220:intron 45.0%
AGCCGCTTGGCATAATAGAA+GGG - chr5_2:29999578-29999597 None:intergenic 45.0%
TAGCCGCTTGGCATAATAGA+AGG - chr5_2:29999579-29999598 None:intergenic 45.0%
!! GCTTTAGCGCTAGCTCTTTT+AGG + chr5_2:29999606-29999625 Msa0767220:intron 45.0%
TCTCACGTATGGAACAGAAG+CGG - chr5_2:29999753-29999772 None:intergenic 45.0%
CTTCTGTTCCATACGTGAGA+CGG + chr5_2:29999753-29999772 Msa0767220:intron 45.0%
TTACCTTTCCGTCTCACGTA+TGG - chr5_2:29999764-29999783 None:intergenic 45.0%
CTCGCCAATTGTTGAATGAG+GGG + chr5_2:29999784-29999803 Msa0767220:intron 45.0%
ACGACCCCTCATTCAACAAT+TGG - chr5_2:29999791-29999810 None:intergenic 45.0%
!! TTCCTCCACCCAGTTAGTTT+TGG + chr5_2:29999838-29999857 Msa0767220:intron 45.0%
GATACGTAGAAGGCTAGATG+AGG - chr5_2:29999864-29999883 None:intergenic 45.0%
GTGAACTGAGTGCCTTAATC+TGG + chr5_2:30000001-30000020 Msa0767220:intron 45.0%
! TGCCTTAATCTGGGATCACA+AGG + chr5_2:30000011-30000030 Msa0767220:intron 45.0%
GACCTTGTGATCCCAGATTA+AGG - chr5_2:30000016-30000035 None:intergenic 45.0%
CCTAGCAAGATTCGGAGTAT+CGG - chr5_2:30000038-30000057 None:intergenic 45.0%
CAGCGAACTACTCCACAAAA+TGG - chr5_2:30000125-30000144 None:intergenic 45.0%
!! TTTTAGTTGGCTAGCAGCCT+TGG + chr5_2:30000158-30000177 Msa0767220:intron 45.0%
TTTAGTTGGCTAGCAGCCTT+GGG + chr5_2:30000159-30000178 Msa0767220:intron 45.0%
TCTATACCCCACCATACGAA+GGG + chr5_2:30000198-30000217 Msa0767220:intron 45.0%
AGAAGCTAGTGAAGTGAGCT+CGG + chr5_2:30000227-30000246 Msa0767220:intron 45.0%
TATTCATGTCCCCATGCCTT+TGG + chr5_2:30000262-30000281 Msa0767220:intron 45.0%
! TGACAAATGCCAAAGGCATG+GGG - chr5_2:30000274-30000293 None:intergenic 45.0%
! GTGACAAATGCCAAAGGCAT+GGG - chr5_2:30000275-30000294 None:intergenic 45.0%
TGTGACAAATGCCAAAGGCA+TGG - chr5_2:30000276-30000295 None:intergenic 45.0%
AACCTGCTCGTAAGACTTTC+TGG + chr5_2:30000343-30000362 Msa0767220:intron 45.0%
ACCTGCTCGTAAGACTTTCT+GGG + chr5_2:30000344-30000363 Msa0767220:intron 45.0%
ATCGACCCGAGTTACTTGAT+TGG + chr5_2:30000438-30000457 Msa0767220:intron 45.0%
CACCACCAATCAAGTAACTC+GGG - chr5_2:30000446-30000465 None:intergenic 45.0%
AAGAAGTCCTTACAGGTGGA+AGG - chr5_2:30000495-30000514 None:intergenic 45.0%
CACGTTCCACGCAAAGATAA+TGG - chr5_2:30000583-30000602 None:intergenic 45.0%
CATGGTATTCGCCTGTAACT+TGG + chr5_2:30000680-30000699 Msa0767220:intron 45.0%
!! CATATTCGGCGGTGTTATTC+AGG + chr5_2:30000788-30000807 Msa0767220:intron 45.0%
!! TATTCGGCGGTGTTATTCAG+GGG + chr5_2:30000790-30000809 Msa0767220:intron 45.0%
ATCCATCAATGGCTTAGGAC+CGG - chr5_2:30001117-30001136 None:intergenic 45.0%
TGAACTCTCAACATGGGAAG+AGG + chr5_2:30001518-30001537 Msa0767220:CDS 45.0%
! GTTTGGTGAGGAAATTGGAG+TGG + chr5_2:30001561-30001580 Msa0767220:CDS 45.0%
TGGCGCAGTTGTTGAAGAAT+GGG + chr5_2:30001612-30001631 Msa0767220:CDS 45.0%
CATTATGCAATGGACCTGCT+TGG - chr5_2:30002053-30002072 None:intergenic 45.0%
ATTGCTGGAAACTACTGGTG+TGG + chr5_2:30002201-30002220 Msa0767220:CDS 45.0%
! AGAATAGATGCCAAAGGTGC+TGG - chr5_2:30002232-30002251 None:intergenic 45.0%
!!! TTTTTTTTAGATTTTATTTT+TGG - chr5_2:30001330-30001349 None:intergenic 5.0%
! AGCAAGAAGTTGGTCGGTAG+AGG + chr5_2:29997459-29997478 Msa0767220:intron 50.0%
! AAGAAGTTGGTCGGTAGAGG+CGG + chr5_2:29997462-29997481 Msa0767220:intron 50.0%
CCGTCATCTAACACCTCCAA+AGG - chr5_2:29997543-29997562 None:intergenic 50.0%
AGGTTGAGGTTCCCCTCAAA+AGG + chr5_2:29997574-29997593 Msa0767220:intron 50.0%
!! TGCTCTGAGAAGCCTCAAGT+TGG + chr5_2:29997639-29997658 Msa0767220:intron 50.0%
!! TGAGAAGCCTCAAGTTGGTG+AGG + chr5_2:29997644-29997663 Msa0767220:intron 50.0%
! TGTTCTAGGTGTCTAGCGTC+TGG + chr5_2:29997673-29997692 Msa0767220:intron 50.0%
GGATGTTGTTCGTTCGGATG+TGG + chr5_2:29997866-29997885 Msa0767220:intron 50.0%
!! AGCTTCTAGCTTTGCCACCA+TGG - chr5_2:29997919-29997938 None:intergenic 50.0%
GGCAAAGCTAGAAGCTAACC+TGG + chr5_2:29997923-29997942 Msa0767220:intron 50.0%
AAGCTAGAAGCTAACCTGGC+TGG + chr5_2:29997927-29997946 Msa0767220:intron 50.0%
!! AACCTGGCTGGTTTGAAGAC+GGG + chr5_2:29997939-29997958 Msa0767220:intron 50.0%
TCTGGAGAAGAAAGCTGAGG+AGG + chr5_2:29997992-29998011 Msa0767220:intron 50.0%
GAAAGCTGAGGAGGATCTCA+AGG + chr5_2:29998001-29998020 Msa0767220:intron 50.0%
CGAGGAGAAGAGGAATTTCG+AGG + chr5_2:29998061-29998080 Msa0767220:intron 50.0%
TCTTCAGGCTTTACCGAGCA+AGG - chr5_2:29998110-29998129 None:intergenic 50.0%
GCCTGAAGATCTGCTTGGTT+TGG + chr5_2:29998121-29998140 Msa0767220:intron 50.0%
CAATCTTGTCCACCATGCCA+CGG - chr5_2:29998151-29998170 None:intergenic 50.0%
!! TGGCATGGTGGACAAGATTG+AGG + chr5_2:29998151-29998170 Msa0767220:intron 50.0%
CATGAATGGCCGCACAAACA+AGG - chr5_2:29998191-29998210 None:intergenic 50.0%
CTTGTTTGTGCGGCCATTCA+TGG + chr5_2:29998189-29998208 Msa0767220:intron 50.0%
TCGACTGAAAGCTCGACATC+GGG - chr5_2:29998252-29998271 None:intergenic 50.0%
GATGTCGAGCTTTCAGTCGA+AGG + chr5_2:29998252-29998271 Msa0767220:intron 50.0%
GATCCGCTACCTGAAGTAAG+TGG + chr5_2:29998275-29998294 Msa0767220:intron 50.0%
GTAAGTGGAGAATAGAGCCC+TGG + chr5_2:29998290-29998309 Msa0767220:intron 50.0%
CTTCTTCTTCTTCACGGGGA+AGG - chr5_2:29998320-29998339 None:intergenic 50.0%
GCATTGTTATGGCACAAGGC+CGG - chr5_2:29998426-29998445 None:intergenic 50.0%
ATCTGAATGCTCGTTGCGTG+AGG + chr5_2:29998560-29998579 Msa0767220:intron 50.0%
AAGGTTAGACCGTTCACGCT+CGG - chr5_2:29998969-29998988 None:intergenic 50.0%
GCGTGAACGGTCTAACCTTT+AGG + chr5_2:29998970-29998989 Msa0767220:intron 50.0%
GAACGGTCTAACCTTTAGGC+AGG + chr5_2:29998974-29998993 Msa0767220:intron 50.0%
CGATGGGTGATTCACACATC+TGG - chr5_2:29999111-29999130 None:intergenic 50.0%
TGAATTCAAGCTCCTCCTGC+AGG + chr5_2:29999654-29999673 Msa0767220:intron 50.0%
GAGCTCAACGAGCTCAACTA+GGG - chr5_2:29999719-29999738 None:intergenic 50.0%
TGAGCTCAACGAGCTCAACT+AGG - chr5_2:29999720-29999739 None:intergenic 50.0%
TTGAGCTCGTTGAGCTCACT+GGG + chr5_2:29999722-29999741 Msa0767220:intron 50.0%
GTTCCATACGTGAGACGGAA+AGG + chr5_2:29999758-29999777 Msa0767220:intron 50.0%
TGAGGCCAAAACTAACTGGG+TGG - chr5_2:29999846-29999865 None:intergenic 50.0%
TCGAACACCCACTAGCAAAC+AGG - chr5_2:29999922-29999941 None:intergenic 50.0%
CCGATACTCCGAATCTTGCT+AGG + chr5_2:30000035-30000054 Msa0767220:intron 50.0%
TGGTGGGGTATAGACCTTCT+GGG - chr5_2:30000192-30000211 None:intergenic 50.0%
! ATGGTGGGGTATAGACCTTC+TGG - chr5_2:30000193-30000212 None:intergenic 50.0%
GTCTATACCCCACCATACGA+AGG + chr5_2:30000197-30000216 Msa0767220:intron 50.0%
CTTCCTTTAGCATGGTAGGC+AGG + chr5_2:30000316-30000335 Msa0767220:intron 50.0%
CTTCCTGCCTACCATGCTAA+AGG - chr5_2:30000322-30000341 None:intergenic 50.0%
GACCCGAGTTACTTGATTGG+TGG + chr5_2:30000441-30000460 Msa0767220:intron 50.0%
! CAACCACATGGACTGCTAAC+GGG - chr5_2:30000534-30000553 None:intergenic 50.0%
! GCAACCACATGGACTGCTAA+CGG - chr5_2:30000535-30000554 None:intergenic 50.0%
AGGCGAATACCATGTAAGGG+AGG - chr5_2:30000674-30000693 None:intergenic 50.0%
GTATTCGCCTGTAACTTGGG+AGG + chr5_2:30000684-30000703 Msa0767220:intron 50.0%
TATTCAGGGGCGAACAGAGA+TGG + chr5_2:30000803-30000822 Msa0767220:intron 50.0%
AAGAGGTCGTTCAAGTCTCG+CGG - chr5_2:30001080-30001099 None:intergenic 50.0%
ATCCGGTCCTAAGCCATTGA+TGG + chr5_2:30001112-30001131 Msa0767220:intron 50.0%
! TGGAAGTGTGTTCGAACCCT+CGG + chr5_2:30001430-30001449 Msa0767220:intron 50.0%
GTGGCGCAGTTGTTGAAGAA+TGG + chr5_2:30001611-30001630 Msa0767220:CDS 50.0%
TCTCTGCACAAGCTGCTCAA+GGG - chr5_2:30001692-30001711 None:intergenic 50.0%
TTCTCTGCACAAGCTGCTCA+AGG - chr5_2:30001693-30001712 None:intergenic 50.0%
AGATGCAGTGTTCGGCAAAG+TGG + chr5_2:30002118-30002137 Msa0767220:intron 50.0%
GATGCAGTGTTCGGCAAAGT+GGG + chr5_2:30002119-30002138 Msa0767220:intron 50.0%
TGTGGCTAATCCAGCACCTT+TGG + chr5_2:30002219-30002238 Msa0767220:CDS 50.0%
!! AGATGACGGGCAGGTTGAGA+AGG + chr5_2:29997554-29997573 Msa0767220:intron 55.0%
!! GAAGCCTCAAGTTGGTGAGG+TGG + chr5_2:29997647-29997666 Msa0767220:intron 55.0%
GCGTCTGGTATGAGCCTGAT+AGG + chr5_2:29997688-29997707 Msa0767220:intron 55.0%
TACTCGTGCCAACGACTCTC+AGG - chr5_2:29997770-29997789 None:intergenic 55.0%
TGAGAGTCGTTGGCACGAGT+AGG + chr5_2:29997769-29997788 Msa0767220:intron 55.0%
GAGAGTCGTTGGCACGAGTA+GGG + chr5_2:29997770-29997789 Msa0767220:intron 55.0%
ACGAGTAGGGCGATGACTGA+GGG + chr5_2:29997783-29997802 Msa0767220:intron 55.0%
GATGAAGGCCCTTGAGATCG+CGG + chr5_2:29997818-29997837 Msa0767220:intron 55.0%
!! TAGAGGCACCGCGATCTCAA+GGG - chr5_2:29997829-29997848 None:intergenic 55.0%
!! TTAGAGGCACCGCGATCTCA+AGG - chr5_2:29997830-29997849 None:intergenic 55.0%
TCGTTCGGATGTGGCTGTGA+AGG + chr5_2:29997875-29997894 Msa0767220:intron 55.0%
GAAGGAGCGGGACAATGTTG+TGG + chr5_2:29997893-29997912 Msa0767220:intron 55.0%
GGACAATGTTGTGGCCATGG+TGG + chr5_2:29997902-29997921 Msa0767220:intron 55.0%
!! ACCTGGCTGGTTTGAAGACG+GGG + chr5_2:29997940-29997959 Msa0767220:intron 55.0%
AAGACGGGGTCCGAGTAGAA+AGG + chr5_2:29997954-29997973 Msa0767220:intron 55.0%
TCAAGGCCCTAAACCAGCTG+AGG + chr5_2:29998018-29998037 Msa0767220:intron 55.0%
CAAGGCCCTAAACCAGCTGA+GGG + chr5_2:29998019-29998038 Msa0767220:intron 55.0%
! AGCCTCCCTCAGCTGGTTTA+GGG - chr5_2:29998027-29998046 None:intergenic 55.0%
GGAAGTTAGCCGAGGAGAAG+AGG + chr5_2:29998051-29998070 Msa0767220:intron 55.0%
CTTTACCGAGCAAGGACCAG+TGG - chr5_2:29998102-29998121 None:intergenic 55.0%
GGTGGACAAGATTGAGGAGC+TGG + chr5_2:29998157-29998176 Msa0767220:intron 55.0%
CGACTGAAAGCTCGACATCG+GGG - chr5_2:29998251-29998270 None:intergenic 55.0%
GCGCGCATTGTTATGGCACA+AGG - chr5_2:29998430-29998449 None:intergenic 55.0%
TGAATCACCCATCGCGAGCT+GGG + chr5_2:29999117-29999136 Msa0767220:intron 55.0%
ATGAGCACCTACAACGGAGG+CGG - chr5_2:29999270-29999289 None:intergenic 55.0%
CTGATGAGCACCTACAACGG+AGG - chr5_2:29999273-29999292 None:intergenic 55.0%
GGGCTCGAGGACCTTGTAAA+GGG - chr5_2:29999424-29999443 None:intergenic 55.0%
CAACGTTGAGATCCTGCAGG+AGG - chr5_2:29999669-29999688 None:intergenic 55.0%
CTCCTGCAGGATCTCAACGT+TGG + chr5_2:29999667-29999686 Msa0767220:intron 55.0%
AGCCAACGTTGAGATCCTGC+AGG - chr5_2:29999672-29999691 None:intergenic 55.0%
! GCAGGATCTCAACGTTGGCT+TGG + chr5_2:29999672-29999691 Msa0767220:intron 55.0%
GTTGAGCTCGTTGAGCTCAC+TGG + chr5_2:29999721-29999740 Msa0767220:intron 55.0%
GGGTCGTTCGATAAGCCCAT+AGG + chr5_2:29999804-29999823 Msa0767220:intron 55.0%
GGCCAAAACTAACTGGGTGG+AGG - chr5_2:29999843-29999862 None:intergenic 55.0%
TTGGCTAGCAGCCTTGGGAA+AGG + chr5_2:30000164-30000183 Msa0767220:intron 55.0%
TGGCTAGCAGCCTTGGGAAA+GGG + chr5_2:30000165-30000184 Msa0767220:intron 55.0%
TCCCTGTCCCTTCGTATGGT+GGG - chr5_2:30000208-30000227 None:intergenic 55.0%
CTTCTCCCTGTCCCTTCGTA+TGG - chr5_2:30000212-30000231 None:intergenic 55.0%
AGTGAAGTGAGCTCGGCTAG+AGG + chr5_2:30000234-30000253 Msa0767220:intron 55.0%
GTGAAGTGAGCTCGGCTAGA+GGG + chr5_2:30000235-30000254 Msa0767220:intron 55.0%
TGAAGTGAGCTCGGCTAGAG+GGG + chr5_2:30000236-30000255 Msa0767220:intron 55.0%
GCCCAGAAAGTCTTACGAGC+AGG - chr5_2:30000348-30000367 None:intergenic 55.0%
GGCATATGCGGGCAACATCT+TGG - chr5_2:30000384-30000403 None:intergenic 55.0%
GTTCCCGTTAGCAGTCCATG+TGG + chr5_2:30000528-30000547 Msa0767220:intron 55.0%
GCTCGGCCATTATCTTTGCG+TGG + chr5_2:30000574-30000593 Msa0767220:intron 55.0%
CTCGTTGCCTCCCAAGTTAC+AGG - chr5_2:30000694-30000713 None:intergenic 55.0%
! AAGTTGGTCGGTAGAGGCGG+CGG + chr5_2:29997465-29997484 Msa0767220:intron 60.0%
!! GGAGGTGTTAGATGACGGGC+AGG + chr5_2:29997545-29997564 Msa0767220:intron 60.0%
! CGGGCAGGTTGAGAAGGTTG+AGG + chr5_2:29997560-29997579 Msa0767220:intron 60.0%
CACGAGTAGGGCGATGACTG+AGG + chr5_2:29997782-29997801 Msa0767220:intron 60.0%
CGGATGTGGCTGTGAAGGAG+CGG + chr5_2:29997880-29997899 Msa0767220:intron 60.0%
GGATGTGGCTGTGAAGGAGC+GGG + chr5_2:29997881-29997900 Msa0767220:intron 60.0%
GCGGGACAATGTTGTGGCCA+TGG + chr5_2:29997899-29997918 Msa0767220:intron 60.0%
ACCCCGTCTTCAAACCAGCC+AGG - chr5_2:29997944-29997963 None:intergenic 60.0%
! GAGCCTCCCTCAGCTGGTTT+AGG - chr5_2:29998028-29998047 None:intergenic 60.0%
AACCAGCTGAGGGAGGCTCA+AGG + chr5_2:29998029-29998048 Msa0767220:intron 60.0%
ACCAGCTGAGGGAGGCTCAA+GGG + chr5_2:29998030-29998049 Msa0767220:intron 60.0%
GGCTCAAGGGAAGTTAGCCG+AGG + chr5_2:29998043-29998062 Msa0767220:intron 60.0%
AGGACCAGTGGCTTCGCGAA+GGG - chr5_2:29998090-29998109 None:intergenic 60.0%
AAGGACCAGTGGCTTCGCGA+AGG - chr5_2:29998091-29998110 None:intergenic 60.0%
CGAAGCCACTGGTCCTTGCT+CGG + chr5_2:29998094-29998113 Msa0767220:intron 60.0%
!! CTGCTTGGTTTGGATCGCCG+TGG + chr5_2:29998131-29998150 Msa0767220:intron 60.0%
! TGGTTTGGATCGCCGTGGCA+TGG + chr5_2:29998136-29998155 Msa0767220:intron 60.0%
TTTGGATCGCCGTGGCATGG+TGG + chr5_2:29998139-29998158 Msa0767220:intron 60.0%
TTCACGGGGAAGGGACACCA+GGG - chr5_2:29998310-29998329 None:intergenic 60.0%
GCACAAGGCCGGTTACAGCA+AGG - chr5_2:29998415-29998434 None:intergenic 60.0%
CAAGGGGATCCGAGCGTGAA+CGG + chr5_2:29998957-29998976 Msa0767220:intron 60.0%
GTGAATCACCCATCGCGAGC+TGG + chr5_2:29999116-29999135 Msa0767220:intron 60.0%
GAATCACCCATCGCGAGCTG+GGG + chr5_2:29999118-29999137 Msa0767220:intron 60.0%
GTAGAACCCCAGCTCGCGAT+GGG - chr5_2:29999127-29999146 None:intergenic 60.0%
AGTAGAACCCCAGCTCGCGA+TGG - chr5_2:29999128-29999147 None:intergenic 60.0%
TGAGCACCTACAACGGAGGC+GGG - chr5_2:29999269-29999288 None:intergenic 60.0%
CGGGCTCGAGGACCTTGTAA+AGG - chr5_2:29999425-29999444 None:intergenic 60.0%
!! CCTTCTGGGACCCTTTCCCA+AGG - chr5_2:30000178-30000197 None:intergenic 60.0%
CCTTGGGAAAGGGTCCCAGA+AGG + chr5_2:30000175-30000194 Msa0767220:intron 60.0%
ACCCCACCATACGAAGGGAC+AGG + chr5_2:30000203-30000222 Msa0767220:intron 60.0%
CCCTGTCCCTTCGTATGGTG+GGG - chr5_2:30000207-30000226 None:intergenic 60.0%
CCCCACCATACGAAGGGACA+GGG + chr5_2:30000204-30000223 Msa0767220:intron 60.0%
CTCCCTGTCCCTTCGTATGG+TGG - chr5_2:30000209-30000228 None:intergenic 60.0%
GACTTTCTGGGCGAGAGCCT+TGG + chr5_2:30000356-30000375 Msa0767220:intron 60.0%
CGGGCAACATCTTGGAGCCA+AGG - chr5_2:30000376-30000395 None:intergenic 60.0%
GTAGAGGCGGCGGCAGGAAA+AGG + chr5_2:29997475-29997494 Msa0767220:intron 65.0%
GGCCCTAAACCAGCTGAGGG+AGG + chr5_2:29998022-29998041 Msa0767220:intron 65.0%
TCCCTTGAGCCTCCCTCAGC+TGG - chr5_2:29998034-29998053 None:intergenic 65.0%
CTTCACGGGGAAGGGACACC+AGG - chr5_2:29998311-29998330 None:intergenic 65.0%
GCTGCCCTTCGCGAAGCCAC+TGG + chr5_2:29998083-29998102 Msa0767220:intron 70.0%
CGACTGCCCGCCTCCGTTGT+AGG + chr5_2:29999260-29999279 Msa0767220:intron 70.0%
GATGGGTGCGTACGGGCTCG+AGG - chr5_2:29999437-29999456 None:intergenic 70.0%
TGGTCGGTAGAGGCGGCGGC+AGG + chr5_2:29997469-29997488 Msa0767220:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 29997383 30002282 29997383 ID=Msa0767220;Name=Msa0767220
chr5_2 mRNA 29997383 30002282 29997383 ID=Msa0767220-mRNA-1;Parent=Msa0767220;Name=Msa0767220-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0|0.66|0.5|0.66|3|0|132
chr5_2 exon 29997383 29997466 29997383 ID=Msa0767220-mRNA-1:exon:11365;Parent=Msa0767220-mRNA-1
chr5_2 exon 30001502 30001719 30001502 ID=Msa0767220-mRNA-1:exon:11366;Parent=Msa0767220-mRNA-1
chr5_2 exon 30002189 30002282 30002189 ID=Msa0767220-mRNA-1:exon:11367;Parent=Msa0767220-mRNA-1
chr5_2 CDS 29997383 29997466 29997383 ID=Msa0767220-mRNA-1:cds;Parent=Msa0767220-mRNA-1
chr5_2 CDS 30001502 30001719 30001502 ID=Msa0767220-mRNA-1:cds;Parent=Msa0767220-mRNA-1
chr5_2 CDS 30002189 30002282 30002189 ID=Msa0767220-mRNA-1:cds;Parent=Msa0767220-mRNA-1
Gene Sequence

>Msa0767220

CCCATTACTAACATACTTTCTGACCCTTTTGTTCGCAGGAAAAATGCAAAATATGCACTAGCTTCTGAAGAAATCGAGCAAGAATTAGTGAATCATATATTGAACTCTCAACATGGGAAGAGGATTGCTGTGATATTGAATGAGTTTGGTGAGGAAATTGGAGTGGAAAGAGCATTGATAAATGAAGGGGAAAGTGGCGCAGTTGTTGAAGAATGGGTTGAACTTGCTAATGGCTGTATTTGTTGCACTGTTAAACATAGTTTGGTTCAAGCCCTTGAGCAGCTTGTGCAGAGAAAAGAAAGGCTAGACCATATATTGCTGGAAACTACTGGTGTGGCTAATCCAGCACCTTTGGCATCTATTCTTTGGTTGGATGAACAGTTGGAATCTGATGTA

Protein sequence

>Msa0767220

PITNILSDPFVRRKNAKYALASEEIEQELVNHILNSQHGKRIAVILNEFGEEIGVERALINEGESGAVVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGVANPAPLASILWLDEQLESDV