AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057400 MtrunA17_Chr1g0147041 99.399 333 2 0 1 333 1 333 0.0 699
Msa0057400 MtrunA17_Chr3g0126851 90.390 333 23 2 1 333 1 324 0.0 606
Msa0057400 MtrunA17_Chr8g0346801 79.456 331 46 3 3 333 1 309 0.0 543
Msa0057400 MtrunA17_Chr7g0275701 78.361 305 50 4 30 333 34 323 8.40e-180 500
Msa0057400 MtrunA17_Chr3g0083571 83.333 258 43 0 62 319 47 304 2.98e-168 470
Msa0057400 MtrunA17_Chr8g0352701 76.208 269 60 1 55 319 36 304 4.14e-161 452
Msa0057400 MtrunA17_Chr7g0258941 75.281 267 66 0 52 318 43 309 4.20e-155 437
Msa0057400 MtrunA17_Chr1g0175721 70.103 291 80 1 36 319 19 309 2.60e-154 435
Msa0057400 MtrunA17_Chr4g0051351 26.695 236 158 7 45 279 76 297 5.70e-20 89.0
Msa0057400 MtrunA17_Chr5g0433631 31.928 166 107 3 69 234 34 193 1.28e-19 88.2
Msa0057400 MtrunA17_Chr7g0223111 27.273 220 149 5 58 276 26 235 2.40e-19 87.4
Msa0057400 MtrunA17_Chr5g0428191 33.094 139 91 2 68 205 11 148 8.63e-18 82.8
Msa0057400 MtrunA17_Chr5g0433541 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0057400 MtrunA17_Chr5g0433551 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0057400 MtrunA17_Chr5g0433411 25.670 261 177 7 52 311 17 261 3.17e-16 78.6
Msa0057400 MtrunA17_Chr5g0433661 31.544 149 97 2 48 193 25 171 4.80e-16 78.2
Msa0057400 MtrunA17_Chr5g0424971 29.861 144 95 4 58 200 8 146 1.39e-15 76.6
Msa0057400 MtrunA17_Chr1g0169381 35.345 116 72 2 68 183 11 123 3.60e-15 72.0
Msa0057400 MtrunA17_Chr5g0433531 32.768 177 103 5 63 234 6 171 4.86e-15 74.7
Msa0057400 MtrunA17_Chr2g0298951 33.628 113 70 2 84 193 9 119 3.56e-14 72.0
Msa0057400 MtrunA17_Chr7g0259431 37.000 100 61 1 84 183 9 106 2.44e-13 69.7
Msa0057400 MtrunA17_Chr5g0433521 30.128 156 93 5 84 234 23 167 4.47e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057400 AT3G61790.1 81.081 333 53 2 1 331 1 325 0.0 554
Msa0057400 AT4G27880.1 78.932 337 56 4 1 333 1 326 0.0 543
Msa0057400 AT3G58040.1 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0057400 AT3G58040.3 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0057400 AT2G41980.1 76.259 278 61 1 42 319 33 305 2.57e-160 450
Msa0057400 AT5G53360.1 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0057400 AT5G53360.3 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0057400 AT3G58040.2 63.889 216 60 3 10 222 14 214 1.98e-90 270
Msa0057400 AT5G53360.2 89.167 120 13 0 214 333 60 179 1.60e-78 238
Msa0057400 AT5G53360.2 57.692 52 14 1 33 84 16 59 2.08e-11 62.4
Msa0057400 AT3G13672.1 58.333 168 67 1 155 319 45 212 2.95e-71 221
Msa0057400 AT3G13672.2 50.769 195 66 2 155 319 45 239 1.16e-65 207
Msa0057400 AT5G37870.1 39.062 128 75 2 67 194 41 165 5.75e-25 102
Msa0057400 AT5G37930.1 34.595 185 111 3 11 187 45 227 1.49e-24 102
Msa0057400 AT5G37890.1 27.935 247 163 6 67 311 47 280 2.99e-22 95.1
Msa0057400 AT5G62800.1 26.667 255 159 7 67 311 39 275 6.98e-21 92.4
Msa0057400 AT5G62800.2 27.103 214 132 5 67 270 39 238 1.35e-20 90.9
Msa0057400 AT1G66660.2 40.179 112 65 1 67 178 102 211 3.68e-20 90.1
Msa0057400 AT1G66650.1 38.655 119 70 2 68 185 83 199 5.23e-20 89.7
Msa0057400 AT1G66620.1 35.878 131 80 2 55 183 26 154 5.80e-20 89.4
Msa0057400 AT1G66630.1 35.915 142 85 3 49 186 25 164 4.10e-19 86.7
Msa0057400 AT5G37910.1 35.537 121 76 1 67 187 34 152 5.04e-19 85.9
Msa0057400 AT1G66610.2 35.165 91 56 1 40 130 133 220 1.50e-13 69.7
Msa0057400 AT1G66610.2 40.299 67 40 0 67 133 52 118 2.39e-11 63.2
Msa0057400 AT1G66610.1 42.857 63 36 0 67 129 52 114 1.47e-11 65.1

Find 99 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGTATGGAAAGATTTC+TGG 0.159871 1_2:+13427024 None:intergenic
AACAATAATCATGGTGTTAT+TGG 0.169856 1_2:-13430318 Msa0057400:CDS
TGATAGGTATTTCATTGTTT+TGG 0.211856 1_2:-13426436 Msa0057400:intron
CCTCATAATTCAACGAAATA+TGG 0.309243 1_2:-13426206 Msa0057400:CDS
GTTGTGTAATAAACAAGATT+TGG 0.313626 1_2:-13425946 Msa0057400:three_prime_UTR
TGCTTCAGCTTGCTGTAGTA+TGG 0.315397 1_2:+13427012 None:intergenic
TAAGAGTCACAGGAAGAATA+TGG 0.339068 1_2:-13426144 Msa0057400:CDS
CGAAGGAATGCCATGTAAAC+TGG 0.349784 1_2:+13426367 None:intergenic
CATGGCATTCCTTCGTTTCA+TGG 0.350645 1_2:-13426359 Msa0057400:CDS
TCTCTCTCTTACCTAGTTTG+AGG 0.354784 1_2:+13430817 None:intergenic
AGCCTCGAGGTTGGGGCAAA+TGG 0.361379 1_2:-13426304 Msa0057400:CDS
ATAAAGCAAACCTGATGAAT+TGG 0.365377 1_2:+13430219 None:intergenic
CAAATGGAAGAAAACTCATT+TGG 0.371206 1_2:-13426288 Msa0057400:CDS
ACACATCAGCTGCAAAGATT+TGG 0.392931 1_2:+13426085 None:intergenic
ATACCTACAGCCTCGAGGTT+GGG 0.402306 1_2:-13426312 Msa0057400:CDS
GAAGATGAAGATTGTAATCA+TGG 0.408797 1_2:+13430708 None:intergenic
TAATAAACAAGATTTGGAAC+TGG 0.421003 1_2:-13425940 Msa0057400:three_prime_UTR
AATGTATCCTCCAATTCATC+AGG 0.424313 1_2:-13430229 Msa0057400:intron
CCATATTTCGTTGAATTATG+AGG 0.425488 1_2:+13426206 None:intergenic
TAGGTGTCTGGCACTGGAAA+AGG 0.426106 1_2:-13427094 Msa0057400:CDS
TACATTGAATTGGTACAAAC+AGG 0.426249 1_2:+13430246 None:intergenic
CCATGCAAATACTACTCTCT+TGG 0.426909 1_2:-13427051 Msa0057400:CDS
TGTTTCTTCTTCTGATGGAA+TGG 0.427322 1_2:-13430436 Msa0057400:CDS
AGATATTAGGTGTCTGGCAC+TGG 0.427576 1_2:-13427100 Msa0057400:CDS
GGTATACAAACCCCACCATC+TGG 0.433787 1_2:+13426106 None:intergenic
TTTCCTTGTTGCACATTTGA+GGG 0.444183 1_2:-13426914 Msa0057400:CDS
GACAAGAGCTTGGAGATATT+AGG 0.446367 1_2:-13427113 Msa0057400:CDS
AATTGGAGGATACATTGAAT+TGG 0.448728 1_2:+13430236 None:intergenic
ATTTCCTTGTTGCACATTTG+AGG 0.452204 1_2:-13426915 Msa0057400:CDS
GAGTGTGTTTCTTCTTCTGA+TGG 0.455471 1_2:-13430441 Msa0057400:CDS
CAAAGTGAAGGCAGAAGTAT+TGG 0.460533 1_2:+13426413 None:intergenic
ACATTTGAGGGACGATCATA+AGG 0.461663 1_2:-13426902 Msa0057400:CDS
ATCTCCAAGCTCTTGTCTAC+AGG 0.469456 1_2:+13427119 None:intergenic
AAATGGAAGAAAACTCATTT+GGG 0.470132 1_2:-13426287 Msa0057400:CDS
CACTTTGAAGCTTTCCAGCT+AGG 0.473624 1_2:-13426397 Msa0057400:CDS
AAACTGGAGCCATGCCTAGC+TGG 0.474045 1_2:+13426383 None:intergenic
GCTTGGAGATATTAGGTGTC+TGG 0.474212 1_2:-13427106 Msa0057400:CDS
AAAATTGAAGAGAGAGGAAG+CGG 0.484028 1_2:-13430618 Msa0057400:five_prime_UTR
ATGGCATTCCTTCGTTTCAT+GGG 0.491316 1_2:-13426358 Msa0057400:CDS
TACAAGTGTTCATGAGTTGT+TGG 0.494508 1_2:-13430274 Msa0057400:CDS
AAGAAGAAAATTGAAGAGAG+AGG 0.513631 1_2:-13430624 Msa0057400:five_prime_UTR
TCTTCATTGAAACCTCGTAA+TGG 0.515536 1_2:-13430345 Msa0057400:CDS
TCACAATACAACCTCAAACT+AGG 0.516991 1_2:-13430828 Msa0057400:five_prime_UTR
AATGGAGGAAACAATAATCA+TGG 0.519050 1_2:-13430327 Msa0057400:CDS
TACCTACAGCCTCGAGGTTG+GGG 0.519942 1_2:-13426311 Msa0057400:CDS
CAGTTCCTTCCTATCACCAC+CGG 0.520559 1_2:+13426171 None:intergenic
TAAAGATTAATAAAATTGAA+AGG 0.526678 1_2:+13430923 None:intergenic
CCATACACTTGTCCTTATGC+TGG 0.527298 1_2:-13426967 Msa0057400:CDS
GAACTGAAATTAAGAGTCAC+AGG 0.528820 1_2:-13426154 Msa0057400:CDS
AAGAAAATGAAAATAAGAGA+AGG 0.532624 1_2:+13430686 None:intergenic
AAGCAAACCTGATGAATTGG+AGG 0.534378 1_2:+13430222 None:intergenic
GAGCACTCTGATCCAGCATA+AGG 0.535134 1_2:+13426955 None:intergenic
AGGCATGGCTCCAGTTTACA+TGG 0.535252 1_2:-13426377 Msa0057400:CDS
CCAGCATAAGGACAAGTGTA+TGG 0.536800 1_2:+13426967 None:intergenic
GAGAAAGAAACAAGAACCGT+TGG 0.538634 1_2:+13430853 None:intergenic
ATGATGATTTATTGATCTAA+CGG 0.542398 1_2:+13430879 None:intergenic
TGAAGCTTTCCAGCTAGGCA+TGG 0.545484 1_2:-13426392 Msa0057400:CDS
TTTCTCCGGTGGTGATAGGA+AGG 0.551436 1_2:-13426176 Msa0057400:CDS
TATTACAACATACACAAAGT+TGG 0.551763 1_2:+13426017 None:intergenic
AACAACAGAATCCAGATGGT+GGG 0.552181 1_2:-13426117 Msa0057400:CDS
AATAAACAAGATTTGGAACT+GGG 0.555763 1_2:-13425939 Msa0057400:three_prime_UTR
TATACCTACAGCCTCGAGGT+TGG 0.558753 1_2:-13426313 Msa0057400:CDS
AACTCATGAACACTTGTAGC+AGG 0.562232 1_2:+13430279 None:intergenic
GGATCAGAGTGCTCTGCTGT+TGG 0.562708 1_2:-13426946 Msa0057400:CDS
CCGACCTGTAGACAAGAGCT+TGG 0.568050 1_2:-13427123 Msa0057400:CDS
GTGAAGTAGAGAATGCTACT+TGG 0.568738 1_2:-13426825 Msa0057400:CDS
TGGGAGACGAGAACGAGGCT+CGG 0.575368 1_2:-13426339 Msa0057400:CDS
GAGGATGAAGAATACGATGT+TGG 0.593119 1_2:+13430400 None:intergenic
TTCCATTTGCCCCAACCTCG+AGG 0.594074 1_2:+13426302 None:intergenic
AAGATGAAGATTGTAATCAT+GGG 0.595284 1_2:+13430709 None:intergenic
TGATGATGTTGTTGATGATG+AGG 0.596214 1_2:+13430381 None:intergenic
CCAAGAGAGTAGTATTTGCA+TGG 0.602573 1_2:+13427051 None:intergenic
TGGAAGAAAACTCATTTGGG+AGG 0.602668 1_2:-13426284 Msa0057400:CDS
TCATTGAAACCTCGTAATGG+AGG 0.608179 1_2:-13430342 Msa0057400:CDS
GAACAACAGAATCCAGATGG+TGG 0.613047 1_2:-13426118 Msa0057400:CDS
GCTGGAAAGCTTCAAAGTGA+AGG 0.613710 1_2:+13426401 None:intergenic
ACAACAGAATCCAGATGGTG+GGG 0.614888 1_2:-13426116 Msa0057400:CDS
CGTCCCTCAAATGTGCAACA+AGG 0.623252 1_2:+13426911 None:intergenic
GGAAGAAAACTCATTTGGGA+GGG 0.623722 1_2:-13426283 Msa0057400:CDS
CATAAGGTGGACATGCACAC+AGG 0.632218 1_2:-13426886 Msa0057400:CDS
AATAAATCATCATAATCCAA+CGG 0.635358 1_2:-13430869 Msa0057400:five_prime_UTR
TTTCATGGGAGACGAGAACG+AGG 0.636980 1_2:-13426344 Msa0057400:CDS
GATTTGACTTCACATAACGA+TGG 0.637615 1_2:+13426851 None:intergenic
TGTGTTCCACATGTAAAACA+AGG 0.639674 1_2:-13427161 Msa0057400:CDS
TGCCCCAACCTCGAGGCTGT+AGG 0.640496 1_2:+13426309 None:intergenic
AGAGTAAGACACTAAGACGA+TGG 0.641508 1_2:-13425995 Msa0057400:three_prime_UTR
AAAGAACAACAGAATCCAGA+TGG 0.642877 1_2:-13426121 Msa0057400:CDS
TTATTGTTTCCTCCATTACG+AGG 0.648247 1_2:+13430333 None:intergenic
AAAGTTCGAGATAGTCATGA+CGG 0.664593 1_2:-13426229 Msa0057400:CDS
CCAAGCTCTTGTCTACAGGT+CGG 0.665523 1_2:+13427123 None:intergenic
GCTTTCTTGCAGTGCCACAA+CGG 0.673342 1_2:-13427192 Msa0057400:intron
TCTCGTCTCCCATGAAACGA+AGG 0.676802 1_2:+13426350 None:intergenic
TGGCTATCGCGGATACTCCG+TGG 0.686071 1_2:+13426256 None:intergenic
TTTGAGGGACGATCATAAGG+TGG 0.697457 1_2:-13426899 Msa0057400:CDS
GTGTTCCACATGTAAAACAA+GGG 0.699010 1_2:-13427160 Msa0057400:CDS
GAACTATACCTACAGCCTCG+AGG 0.705784 1_2:-13426317 Msa0057400:CDS
GTAGCATTCTCTACTTCACG+CGG 0.721685 1_2:+13426829 None:intergenic
AACACAATGTGTGACCGTTG+TGG 0.724979 1_2:+13427178 None:intergenic
TCATTTGGGAGGGTACACCA+CGG 0.762771 1_2:-13426273 Msa0057400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGATTAATAAAATTGAA+AGG + chr1_2:13425922-13425941 None:intergenic 10.0%
!!! TTGATTATTTTTTGTTATAA+TGG - chr1_2:13426364-13426383 Msa0057400:CDS 10.0%
!! AATATAATAATACTAATAAG+AGG - chr1_2:13429171-13429190 Msa0057400:intron 10.0%
!!! TTTATTCGTTTTTTTTTTCT+GGG + chr1_2:13426197-13426216 None:intergenic 15.0%
!!! TTTTATTCGTTTTTTTTTTC+TGG + chr1_2:13426198-13426217 None:intergenic 15.0%
!!! TAATTTTTGATTTTGAAATC+TGG - chr1_2:13426318-13426337 Msa0057400:CDS 15.0%
!!! AATTTTTGATTTTGAAATCT+GGG - chr1_2:13426319-13426338 Msa0057400:CDS 15.0%
!!! ATTTTTTGTTATAATGGATT+TGG - chr1_2:13426370-13426389 Msa0057400:CDS 15.0%
!! TAATTCTAAATTCATAAATC+AGG + chr1_2:13426866-13426885 None:intergenic 15.0%
!!! TTTAGTTATTTTTTTAAACC+AGG - chr1_2:13428804-13428823 Msa0057400:intron 15.0%
!! CATTACAATTCAAAATTAAT+GGG + chr1_2:13429243-13429262 None:intergenic 15.0%
!! AATATTAAGTAAAATTCGAT+GGG + chr1_2:13429526-13429545 None:intergenic 15.0%
!! AAATATTAAGTAAAATTCGA+TGG + chr1_2:13429527-13429546 None:intergenic 15.0%
!!! TTGTCTCAAATTTTTTATTA+TGG - chr1_2:13430928-13430947 Msa0057400:five_prime_UTR 15.0%
!!! TTTTTTATTATGGATTAAAG+TGG - chr1_2:13430938-13430957 Msa0057400:five_prime_UTR 15.0%
!! ATGATGATTTATTGATCTAA+CGG + chr1_2:13425966-13425985 None:intergenic 20.0%
!! AATAAATCATCATAATCCAA+CGG - chr1_2:13425973-13425992 Msa0057400:three_prime_UTR 20.0%
!! AAGAAAATGAAAATAAGAGA+AGG + chr1_2:13426159-13426178 None:intergenic 20.0%
!!! AAATTTTCGATTTTGAAATC+TGG - chr1_2:13426287-13426306 Msa0057400:CDS 20.0%
!!! AATTTTCGATTTTGAAATCT+GGG - chr1_2:13426288-13426307 Msa0057400:CDS 20.0%
!!! ATGAATTTAGAATTAGTGAA+AGG - chr1_2:13426871-13426890 Msa0057400:CDS 20.0%
!!! TGAATTTAGAATTAGTGAAA+GGG - chr1_2:13426872-13426891 Msa0057400:CDS 20.0%
!! ATAATTGAAAATTGATCAGT+TGG - chr1_2:13427234-13427253 Msa0057400:intron 20.0%
!!! ACATATAGGTTGATATATTT+AGG - chr1_2:13427303-13427322 Msa0057400:intron 20.0%
!! AATGCATGAAGTAATTTAAT+GGG + chr1_2:13428147-13428166 None:intergenic 20.0%
!! GCATTACAATTCAAAATTAA+TGG + chr1_2:13429244-13429263 None:intergenic 20.0%
!! ATTAGTTAAATAGAGACTAT+TGG + chr1_2:13429295-13429314 None:intergenic 20.0%
!! AATAGTCTCTATTTAACTAA+TGG - chr1_2:13429294-13429313 Msa0057400:intron 20.0%
!!! CTTGGAAAGTTTTTTATTAA+GGG - chr1_2:13429324-13429343 Msa0057400:intron 20.0%
! AAGATGAAGATTGTAATCAT+GGG + chr1_2:13426136-13426155 None:intergenic 25.0%
!!! ATTTCGACGTTTTTTTATCT+AGG + chr1_2:13426271-13426290 None:intergenic 25.0%
!!! GTATGTTCTAGTTTTTGATT+TGG - chr1_2:13426341-13426360 Msa0057400:CDS 25.0%
!!! AACAATAATCATGGTGTTAT+TGG - chr1_2:13426524-13426543 Msa0057400:intron 25.0%
!!! TAGTGTTATTGAGTTGATTT+GGG - chr1_2:13426755-13426774 Msa0057400:intron 25.0%
! ATGACACTTAAGCTTATTAT+TGG - chr1_2:13426966-13426985 Msa0057400:CDS 25.0%
! CAACATTTCCACTAATAATT+TGG - chr1_2:13426989-13427008 Msa0057400:CDS 25.0%
! ATGCTTAATAAGTGCATTTA+AGG - chr1_2:13427021-13427040 Msa0057400:CDS 25.0%
! TCTTATAAAGATGCTTACAA+TGG - chr1_2:13427060-13427079 Msa0057400:CDS 25.0%
! GTAGTTACTTATACTAGTTA+AGG - chr1_2:13427085-13427104 Msa0057400:CDS 25.0%
! TACTTATACTAGTTAAGGTT+AGG - chr1_2:13427090-13427109 Msa0057400:CDS 25.0%
!!! GTTGATATATTTAGGTTGTA+GGG - chr1_2:13427311-13427330 Msa0057400:intron 25.0%
!! TGAACTATGTGTCAAAATTT+TGG - chr1_2:13427361-13427380 Msa0057400:intron 25.0%
! TATGCAATAACCATATGTAA+TGG - chr1_2:13427522-13427541 Msa0057400:intron 25.0%
! TATTAAAACCATAAGCTGTT+AGG + chr1_2:13427618-13427637 None:intergenic 25.0%
! TGTAGATAAAGGAACTAAAA+TGG + chr1_2:13427808-13427827 None:intergenic 25.0%
!! CTGTCTTACTCAAAATTTTA+GGG - chr1_2:13428041-13428060 Msa0057400:intron 25.0%
! GAATGCATGAAGTAATTTAA+TGG + chr1_2:13428148-13428167 None:intergenic 25.0%
! AACAATGTGTAGTAAAATGT+GGG + chr1_2:13428344-13428363 None:intergenic 25.0%
! AAACAATGTGTAGTAAAATG+TGG + chr1_2:13428345-13428364 None:intergenic 25.0%
! CAAATTCCCTCAAATATATT+GGG + chr1_2:13428590-13428609 None:intergenic 25.0%
! ACAAATTCCCTCAAATATAT+TGG + chr1_2:13428591-13428610 None:intergenic 25.0%
! AATTTCTTGAATACTGATCT+TGG - chr1_2:13428657-13428676 Msa0057400:intron 25.0%
!! ATTATTTCGGTGAAATTTTG+TGG - chr1_2:13428769-13428788 Msa0057400:intron 25.0%
! ATTCTGCAAATTCTGAATTT+CGG + chr1_2:13428850-13428869 None:intergenic 25.0%
! TTGTTGAATAAAGAAGGAAT+CGG + chr1_2:13429123-13429142 None:intergenic 25.0%
! CCTTAATAAAAAACTTTCCA+AGG + chr1_2:13429326-13429345 None:intergenic 25.0%
!!! CCTTGGAAAGTTTTTTATTA+AGG - chr1_2:13429323-13429342 Msa0057400:intron 25.0%
! TATGTGAAAATAAACCTTAC+TGG + chr1_2:13429388-13429407 None:intergenic 25.0%
!! TTTTATTGATCTTTTAGCGA+TGG - chr1_2:13429466-13429485 Msa0057400:intron 25.0%
!! TTTATTGATCTTTTAGCGAT+GGG - chr1_2:13429467-13429486 Msa0057400:intron 25.0%
!! TAATGTGCAACTTTGTATTT+TGG - chr1_2:13430176-13430195 Msa0057400:intron 25.0%
! TTGAATAATACTACTGAGTT+TGG - chr1_2:13430334-13430353 Msa0057400:CDS 25.0%
!! TGATAGGTATTTCATTGTTT+TGG - chr1_2:13430406-13430425 Msa0057400:CDS 25.0%
! AAATGGAAGAAAACTCATTT+GGG - chr1_2:13430555-13430574 Msa0057400:five_prime_UTR 25.0%
! TATTACAACATACACAAAGT+TGG + chr1_2:13430828-13430847 None:intergenic 25.0%
! GTTGTGTAATAAACAAGATT+TGG - chr1_2:13430896-13430915 Msa0057400:five_prime_UTR 25.0%
!! TAATAAACAAGATTTGGAAC+TGG - chr1_2:13430902-13430921 Msa0057400:five_prime_UTR 25.0%
!! AATAAACAAGATTTGGAACT+GGG - chr1_2:13430903-13430922 Msa0057400:five_prime_UTR 25.0%
GAAGATGAAGATTGTAATCA+TGG + chr1_2:13426137-13426156 None:intergenic 30.0%
AAGAAGAAAATTGAAGAGAG+AGG - chr1_2:13426218-13426237 Msa0057400:CDS 30.0%
AATGGAGGAAACAATAATCA+TGG - chr1_2:13426515-13426534 Msa0057400:intron 30.0%
TACATTGAATTGGTACAAAC+AGG + chr1_2:13426599-13426618 None:intergenic 30.0%
AATTGGAGGATACATTGAAT+TGG + chr1_2:13426609-13426628 None:intergenic 30.0%
ATAAAGCAAACCTGATGAAT+TGG + chr1_2:13426626-13426645 None:intergenic 30.0%
TATGTGATTGATTGCATGTT+AGG - chr1_2:13426682-13426701 Msa0057400:intron 30.0%
ATGTGATTGATTGCATGTTA+GGG - chr1_2:13426683-13426702 Msa0057400:intron 30.0%
!!! ATGTTAGGGTTGTTTTTGTA+TGG - chr1_2:13426697-13426716 Msa0057400:intron 30.0%
!! TATGGTTATTGTGACTTGTT+TGG - chr1_2:13426715-13426734 Msa0057400:intron 30.0%
!! GTAGTGTTATTGAGTTGATT+TGG - chr1_2:13426754-13426773 Msa0057400:intron 30.0%
!! AGTGTTATTGAGTTGATTTG+GGG - chr1_2:13426756-13426775 Msa0057400:intron 30.0%
TATTGTGTAATTAGCAAGCT+AGG - chr1_2:13426822-13426841 Msa0057400:CDS 30.0%
CGAAAAGTCCAAATTATTAG+TGG + chr1_2:13427000-13427019 None:intergenic 30.0%
AATAAGTGCATTTAAGGAAC+TGG - chr1_2:13427027-13427046 Msa0057400:CDS 30.0%
ATACTAGTTAAGGTTAGGTT+TGG - chr1_2:13427095-13427114 Msa0057400:CDS 30.0%
!! GGTTGATATATTTAGGTTGT+AGG - chr1_2:13427310-13427329 Msa0057400:intron 30.0%
!! GAGCATTTTAACAAGCTATA+CGG + chr1_2:13427460-13427479 None:intergenic 30.0%
CCAAAGCAATACATCTAAAA+TGG + chr1_2:13427553-13427572 None:intergenic 30.0%
! CCATTTTAGATGTATTGCTT+TGG - chr1_2:13427550-13427569 Msa0057400:intron 30.0%
TTAGATGTATTGCTTTGGTT+TGG - chr1_2:13427555-13427574 Msa0057400:intron 30.0%
! TAGATGTATTGCTTTGGTTT+GGG - chr1_2:13427556-13427575 Msa0057400:intron 30.0%
AAACTTAACCTAACAGCTTA+TGG - chr1_2:13427607-13427626 Msa0057400:intron 30.0%
!!! GCTTATGGTTTTAATAGTGT+TGG - chr1_2:13427622-13427641 Msa0057400:intron 30.0%
AAAGCTTGAACTGTAGATAA+AGG + chr1_2:13427819-13427838 None:intergenic 30.0%
! TATCTACAGTTCAAGCTTTT+AGG - chr1_2:13427820-13427839 Msa0057400:intron 30.0%
CTTACTCTTACACAATTTAG+AGG - chr1_2:13427982-13428001 Msa0057400:intron 30.0%
!! CCTAAAATTTTGAGTAAGAC+AGG + chr1_2:13428043-13428062 None:intergenic 30.0%
! CCTGTCTTACTCAAAATTTT+AGG - chr1_2:13428040-13428059 Msa0057400:intron 30.0%
! ATGAAGTAATTTAATGGGCA+GGG + chr1_2:13428142-13428161 None:intergenic 30.0%
TGGTTAAAAAAAACCAGAAG+CGG + chr1_2:13428253-13428272 None:intergenic 30.0%
TAACAAAAACAATGGCTAGA+TGG + chr1_2:13428316-13428335 None:intergenic 30.0%
TTCACCATGGTATTCAAAAT+AGG - chr1_2:13428400-13428419 Msa0057400:intron 30.0%
! CTTAGAATCGTACACTTTTA+CGG - chr1_2:13428432-13428451 Msa0057400:intron 30.0%
ACACAACCCAATATATTTGA+GGG - chr1_2:13428581-13428600 Msa0057400:intron 30.0%
TAATGTTCATTGTATTGGGA+AGG - chr1_2:13428698-13428717 Msa0057400:intron 30.0%
TACAACAGTTAATCGCAAAT+TGG - chr1_2:13428722-13428741 Msa0057400:intron 30.0%
ACAACAGTTAATCGCAAATT+GGG - chr1_2:13428723-13428742 Msa0057400:intron 30.0%
AAATAATTGCTGTAAATGGC+TGG + chr1_2:13428756-13428775 None:intergenic 30.0%
GCCATTTACAGCAATTATTT+CGG - chr1_2:13428756-13428775 Msa0057400:intron 30.0%
ACCGAAATAATTGCTGTAAA+TGG + chr1_2:13428760-13428779 None:intergenic 30.0%
TTCTGCAAATTCTGAATTTC+GGG + chr1_2:13428849-13428868 None:intergenic 30.0%
TTACGAATTATGATTCTGCT+TGG - chr1_2:13428936-13428955 Msa0057400:intron 30.0%
TTTCGCACTGGATATTAAAT+TGG + chr1_2:13429076-13429095 None:intergenic 30.0%
ATAAGAGGTCTAACAGATTT+CGG - chr1_2:13429186-13429205 Msa0057400:intron 30.0%
AAATTAACAAATCGTACGAG+AGG + chr1_2:13429219-13429238 None:intergenic 30.0%
TATTAAGGGAGTAATGTATG+TGG - chr1_2:13429338-13429357 Msa0057400:intron 30.0%
!! GCTTAGTTCTTTTCTCTAAT+TGG - chr1_2:13429418-13429437 Msa0057400:intron 30.0%
! TTATTGATCTTTTAGCGATG+GGG - chr1_2:13429468-13429487 Msa0057400:intron 30.0%
TACCCTTTATCAAATATGTG+CGG - chr1_2:13430091-13430110 Msa0057400:intron 30.0%
AACCGCACATATTTGATAAA+GGG + chr1_2:13430096-13430115 None:intergenic 30.0%
TAACCGCACATATTTGATAA+AGG + chr1_2:13430097-13430116 None:intergenic 30.0%
CAAATGGAAGAAAACTCATT+TGG - chr1_2:13430554-13430573 Msa0057400:five_prime_UTR 30.0%
CCATATTTCGTTGAATTATG+AGG + chr1_2:13430639-13430658 None:intergenic 30.0%
CCTCATAATTCAACGAAATA+TGG - chr1_2:13430636-13430655 Msa0057400:five_prime_UTR 30.0%
TCACAATACAACCTCAAACT+AGG - chr1_2:13426014-13426033 Msa0057400:three_prime_UTR 35.0%
AAAATTGAAGAGAGAGGAAG+CGG - chr1_2:13426224-13426243 Msa0057400:CDS 35.0%
TGTTTCTTCTTCTGATGGAA+TGG - chr1_2:13426406-13426425 Msa0057400:CDS 35.0%
!! TGATGATGTTGTTGATGATG+AGG + chr1_2:13426464-13426483 None:intergenic 35.0%
TCTTCATTGAAACCTCGTAA+TGG - chr1_2:13426497-13426516 Msa0057400:intron 35.0%
TTATTGTTTCCTCCATTACG+AGG + chr1_2:13426512-13426531 None:intergenic 35.0%
TACAAGTGTTCATGAGTTGT+TGG - chr1_2:13426568-13426587 Msa0057400:intron 35.0%
AATGTATCCTCCAATTCATC+AGG - chr1_2:13426613-13426632 Msa0057400:intron 35.0%
TGTAAACCTCAACCAAATTC+AGG + chr1_2:13426801-13426820 None:intergenic 35.0%
!! AACTACTGTTCTTCGAGTTT+TGG - chr1_2:13426902-13426921 Msa0057400:CDS 35.0%
!!! TGTTCTTCGAGTTTTGGTTT+AGG - chr1_2:13426908-13426927 Msa0057400:CDS 35.0%
TTAGGTTTGGACTTTAGTCA+AGG - chr1_2:13427108-13427127 Msa0057400:CDS 35.0%
CTATAAAACCAACGTCAGTT+TGG + chr1_2:13427155-13427174 None:intergenic 35.0%
ATAGAGAAAAGCTTGAGCAA+AGG - chr1_2:13427171-13427190 Msa0057400:CDS 35.0%
GTGATCTTTATCAAACTGGA+AGG + chr1_2:13427276-13427295 None:intergenic 35.0%
AAGCGTGATCTTTATCAAAC+TGG + chr1_2:13427280-13427299 None:intergenic 35.0%
TGCACTTCATCTCAAGAAAT+CGG + chr1_2:13427409-13427428 None:intergenic 35.0%
GAGATGAAGTGCATATACAT+AGG - chr1_2:13427416-13427435 Msa0057400:intron 35.0%
!! ATAGCTTGTTAAAATGCTCC+AGG - chr1_2:13427461-13427480 Msa0057400:intron 35.0%
AATGGTCATGCCATTACATA+TGG + chr1_2:13427535-13427554 None:intergenic 35.0%
AGGACAGTTAGTTATTGACA+TGG - chr1_2:13427840-13427859 Msa0057400:intron 35.0%
! AAGACAGGTCCTAAAGTTTT+GGG + chr1_2:13428028-13428047 None:intergenic 35.0%
! TAAGACAGGTCCTAAAGTTT+TGG + chr1_2:13428029-13428048 None:intergenic 35.0%
! CACAACAACCCCAAAATTTT+AGG - chr1_2:13428078-13428097 Msa0057400:intron 35.0%
! ATCACAGGGCCTAAAATTTT+GGG + chr1_2:13428090-13428109 None:intergenic 35.0%
! CATGAAGTAATTTAATGGGC+AGG + chr1_2:13428143-13428162 None:intergenic 35.0%
!! TTTTAACCACTTTTAGCCTG+TGG - chr1_2:13428264-13428283 Msa0057400:intron 35.0%
!! TTTAACCACTTTTAGCCTGT+GGG - chr1_2:13428265-13428284 Msa0057400:intron 35.0%
GGGAACAGTAACAAAAACAA+TGG + chr1_2:13428324-13428343 None:intergenic 35.0%
! TAACAACACACTTTTCACCA+TGG - chr1_2:13428387-13428406 Msa0057400:intron 35.0%
!! GCAACCTATTTTGAATACCA+TGG + chr1_2:13428407-13428426 None:intergenic 35.0%
!! AAACGTAATTTGCTAGCAGA+CGG - chr1_2:13428490-13428509 Msa0057400:intron 35.0%
CACACAACCCAATATATTTG+AGG - chr1_2:13428580-13428599 Msa0057400:intron 35.0%
ATCTTGGAGAAGAATGACTT+TGG - chr1_2:13428673-13428692 Msa0057400:intron 35.0%
TCTTGGAGAAGAATGACTTT+GGG - chr1_2:13428674-13428693 Msa0057400:intron 35.0%
TGGGCTAATGTTCATTGTAT+TGG - chr1_2:13428693-13428712 Msa0057400:intron 35.0%
GGGCTAATGTTCATTGTATT+GGG - chr1_2:13428694-13428713 Msa0057400:intron 35.0%
CAGAATGTGTAGAATCGTAA+TGG - chr1_2:13428864-13428883 Msa0057400:intron 35.0%
! AATCGGAAAGAAAAGTTGGT+AGG + chr1_2:13429106-13429125 None:intergenic 35.0%
AAGGAATCGGAAAGAAAAGT+TGG + chr1_2:13429110-13429129 None:intergenic 35.0%
CGACAGTTGTTGAATAAAGA+AGG + chr1_2:13429129-13429148 None:intergenic 35.0%
! ATGCTATGTTTTATGTCCTC+TGG - chr1_2:13429260-13429279 Msa0057400:intron 35.0%
TTAACTAATGGTTGCTACCT+TGG - chr1_2:13429306-13429325 Msa0057400:intron 35.0%
AACATGAAGTAGTACCAGTA+AGG - chr1_2:13429371-13429390 Msa0057400:intron 35.0%
ACTTAGGAAGATGTCAAATG+AGG + chr1_2:13429579-13429598 None:intergenic 35.0%
!! AATCATGCTAATGTCGACTT+AGG + chr1_2:13429595-13429614 None:intergenic 35.0%
TGTGTTCCACATGTAAAACA+AGG - chr1_2:13429681-13429700 Msa0057400:intron 35.0%
GTGTTCCACATGTAAAACAA+GGG - chr1_2:13429682-13429701 Msa0057400:intron 35.0%
CTGTAGTATGGAAAGATTTC+TGG + chr1_2:13429821-13429840 None:intergenic 35.0%
ATTTCCTTGTTGCACATTTG+AGG - chr1_2:13429927-13429946 Msa0057400:intron 35.0%
TTTCCTTGTTGCACATTTGA+GGG - chr1_2:13429928-13429947 Msa0057400:intron 35.0%
! GATTTGACTTCACATAACGA+TGG + chr1_2:13429994-13430013 None:intergenic 35.0%
! CATGACTATCTCGAACTTTT+CGG + chr1_2:13430612-13430631 None:intergenic 35.0%
AAAGTTCGAGATAGTCATGA+CGG - chr1_2:13430613-13430632 Msa0057400:five_prime_UTR 35.0%
!! AATATGGCCCTATTTTTCTC+CGG - chr1_2:13430652-13430671 Msa0057400:five_prime_UTR 35.0%
GAACTGAAATTAAGAGTCAC+AGG - chr1_2:13430688-13430707 Msa0057400:five_prime_UTR 35.0%
TAAGAGTCACAGGAAGAATA+TGG - chr1_2:13430698-13430717 Msa0057400:five_prime_UTR 35.0%
AAAGAACAACAGAATCCAGA+TGG - chr1_2:13430721-13430740 Msa0057400:five_prime_UTR 35.0%
GAGAAAGAAACAAGAACCGT+TGG + chr1_2:13425992-13426011 None:intergenic 40.0%
TCTCTCTCTTACCTAGTTTG+AGG + chr1_2:13426028-13426047 None:intergenic 40.0%
TCATGGGTCGATGAAAAAAG+TGG + chr1_2:13426120-13426139 None:intergenic 40.0%
GAGTGTGTTTCTTCTTCTGA+TGG - chr1_2:13426401-13426420 Msa0057400:CDS 40.0%
GAGGATGAAGAATACGATGT+TGG + chr1_2:13426445-13426464 None:intergenic 40.0%
TCATTGAAACCTCGTAATGG+AGG - chr1_2:13426500-13426519 Msa0057400:intron 40.0%
AACTCATGAACACTTGTAGC+AGG + chr1_2:13426566-13426585 None:intergenic 40.0%
AAGCAAACCTGATGAATTGG+AGG + chr1_2:13426623-13426642 None:intergenic 40.0%
! ATTTGGGGCTTATGATGATG+AGG - chr1_2:13426771-13426790 Msa0057400:intron 40.0%
TGATGAGGATGTCCTGAATT+TGG - chr1_2:13426786-13426805 Msa0057400:intron 40.0%
! ACCAACGTCAGTTTGGAATT+TGG + chr1_2:13427148-13427167 None:intergenic 40.0%
AGATCACGCTTCTGACATAT+AGG - chr1_2:13427289-13427308 Msa0057400:intron 40.0%
ACATAGGTTGTAGCGAATCT+CGG - chr1_2:13427432-13427451 Msa0057400:intron 40.0%
! AGGTGTAGCTTGTCTTTAGT+AGG - chr1_2:13427495-13427514 Msa0057400:intron 40.0%
! GGTGTAGCTTGTCTTTAGTA+GGG - chr1_2:13427496-13427515 Msa0057400:intron 40.0%
! TTCAAGCCTTTTTGACCAAG+TGG - chr1_2:13427656-13427675 Msa0057400:intron 40.0%
TCCAAACCACTTGGTCAAAA+AGG + chr1_2:13427665-13427684 None:intergenic 40.0%
!! CTGAAACATTGAGAGCACTA+AGG + chr1_2:13427695-13427714 None:intergenic 40.0%
GAAGCTGAGTTTCACATGTT+TGG - chr1_2:13427719-13427738 Msa0057400:intron 40.0%
CTGAGTTTCACATGTTTGGT+TGG - chr1_2:13427723-13427742 Msa0057400:intron 40.0%
! TTTCACATGTTTGGTTGGTC+TGG - chr1_2:13427728-13427747 Msa0057400:intron 40.0%
!! TTCACATGTTTGGTTGGTCT+GGG - chr1_2:13427729-13427748 Msa0057400:intron 40.0%
! TTTTAGGCCAACAACCACAT+TGG - chr1_2:13427913-13427932 Msa0057400:intron 40.0%
ATACCTTCCAATGTGGTTGT+TGG + chr1_2:13427923-13427942 None:intergenic 40.0%
CACAACAACCCCAAAACTTT+AGG - chr1_2:13428016-13428035 Msa0057400:intron 40.0%
! AGACAGGTCCTAAAGTTTTG+GGG + chr1_2:13428027-13428046 None:intergenic 40.0%
! TCACAGGGCCTAAAATTTTG+GGG + chr1_2:13428089-13428108 None:intergenic 40.0%
! CATCACAGGGCCTAAAATTT+TGG + chr1_2:13428091-13428110 None:intergenic 40.0%
! AATTTTAGGCCCTGTGATGT+AGG - chr1_2:13428092-13428111 Msa0057400:intron 40.0%
AAGATATTTCTCAGGCAAGG+TGG + chr1_2:13428202-13428221 None:intergenic 40.0%
ACCTTGCCTGAGAAATATCT+TGG - chr1_2:13428201-13428220 Msa0057400:intron 40.0%
ACCAAGATATTTCTCAGGCA+AGG + chr1_2:13428205-13428224 None:intergenic 40.0%
TTTGTGCTTGCCACTAAACA+CGG + chr1_2:13428473-13428492 None:intergenic 40.0%
ATTCACGTTCTGCAGATTCT+AGG - chr1_2:13428542-13428561 Msa0057400:intron 40.0%
AGGGAATTTGTGACTGTATG+AGG - chr1_2:13428600-13428619 Msa0057400:intron 40.0%
ATTGCTGTAAATGGCTGGAA+CGG + chr1_2:13428751-13428770 None:intergenic 40.0%
! CAAATTCTGAATTTCGGGTC+GGG + chr1_2:13428844-13428863 None:intergenic 40.0%
! GCAAATTCTGAATTTCGGGT+CGG + chr1_2:13428845-13428864 None:intergenic 40.0%
! GTCTTGCTATGTGTTGGAAT+CGG + chr1_2:13428895-13428914 None:intergenic 40.0%
! GGAATTGTCTTGCTATGTGT+TGG + chr1_2:13428901-13428920 None:intergenic 40.0%
ACCATCATGGCAGTCAAAAT+CGG + chr1_2:13429019-13429038 None:intergenic 40.0%
!! GTAGGCATTTATTTTCGCAC+TGG + chr1_2:13429088-13429107 None:intergenic 40.0%
ATGGGCAAGAAGTAACATTC+TGG + chr1_2:13429508-13429527 None:intergenic 40.0%
TAGGAAGATGTCAAATGAGG+AGG + chr1_2:13429576-13429595 None:intergenic 40.0%
GACAAGAGCTTGGAGATATT+AGG - chr1_2:13429729-13429748 Msa0057400:intron 40.0%
CCAAGAGAGTAGTATTTGCA+TGG + chr1_2:13429794-13429813 None:intergenic 40.0%
CCATGCAAATACTACTCTCT+TGG - chr1_2:13429791-13429810 Msa0057400:intron 40.0%
ACATTTGAGGGACGATCATA+AGG - chr1_2:13429940-13429959 Msa0057400:intron 40.0%
GTGAAGTAGAGAATGCTACT+TGG - chr1_2:13430017-13430036 Msa0057400:intron 40.0%
CACAATCACCAGATCAAGAT+TGG - chr1_2:13430148-13430167 Msa0057400:intron 40.0%
ATCACCAGATCAAGATTGGA+CGG - chr1_2:13430152-13430171 Msa0057400:intron 40.0%
AACGGCTCAAGTTTCAACTT+TGG + chr1_2:13430212-13430231 None:intergenic 40.0%
ACTGTCGGATCAAGATCAAA+CGG + chr1_2:13430230-13430249 None:intergenic 40.0%
AGTCACATGATCTTGACTGT+CGG + chr1_2:13430245-13430264 None:intergenic 40.0%
ACTCGTCAGCTCATTATTCA+CGG + chr1_2:13430285-13430304 None:intergenic 40.0%
! CAAAGTGAAGGCAGAAGTAT+TGG + chr1_2:13430432-13430451 None:intergenic 40.0%
ATGGCATTCCTTCGTTTCAT+GGG - chr1_2:13430484-13430503 Msa0057400:five_prime_UTR 40.0%
TGGAAGAAAACTCATTTGGG+AGG - chr1_2:13430558-13430577 Msa0057400:five_prime_UTR 40.0%
GGAAGAAAACTCATTTGGGA+GGG - chr1_2:13430559-13430578 Msa0057400:five_prime_UTR 40.0%
ATCACCACCGGAGAAAAATA+GGG + chr1_2:13430662-13430681 None:intergenic 40.0%
TATCACCACCGGAGAAAAAT+AGG + chr1_2:13430663-13430682 None:intergenic 40.0%
! TATTTTTCTCCGGTGGTGAT+AGG - chr1_2:13430662-13430681 Msa0057400:five_prime_UTR 40.0%
AACAACAGAATCCAGATGGT+GGG - chr1_2:13430725-13430744 Msa0057400:five_prime_UTR 40.0%
ACACATCAGCTGCAAAGATT+TGG + chr1_2:13430760-13430779 None:intergenic 40.0%
AGAGTAAGACACTAAGACGA+TGG - chr1_2:13430847-13430866 Msa0057400:five_prime_UTR 40.0%
GGATGTCCTGAATTTGGTTG+AGG - chr1_2:13426792-13426811 Msa0057400:intron 45.0%
GCCAAATTCCAAACTGACGT+TGG - chr1_2:13427144-13427163 Msa0057400:CDS 45.0%
! TACACCTCGCATTTTCAACC+TGG + chr1_2:13427482-13427501 None:intergenic 45.0%
! GCCTTTTTGACCAAGTGGTT+TGG - chr1_2:13427661-13427680 Msa0057400:intron 45.0%
CTCAAAAAGCTCTTGCGTGA+GGG - chr1_2:13427764-13427783 Msa0057400:intron 45.0%
TAAAACTTGCCACTCAACGG+CGG + chr1_2:13427898-13427917 None:intergenic 45.0%
GCCTAAAACTTGCCACTCAA+CGG + chr1_2:13427901-13427920 None:intergenic 45.0%
ATCAGCCTAAACCCATTAGC+AGG - chr1_2:13427954-13427973 Msa0057400:intron 45.0%
TCAGCCTAAACCCATTAGCA+GGG - chr1_2:13427955-13427974 Msa0057400:intron 45.0%
AGTAAGACAGCCCTGCTAAT+GGG + chr1_2:13427968-13427987 None:intergenic 45.0%
GCGCAAATGTCTGAAAATCG+TGG + chr1_2:13428180-13428199 None:intergenic 45.0%
GACGCACCAAGATATTTCTC+AGG + chr1_2:13428210-13428229 None:intergenic 45.0%
! GAGAAATATCTTGGTGCGTC+TGG - chr1_2:13428210-13428229 Msa0057400:intron 45.0%
! ATTGAGCTTGTTTCCGCTTC+TGG - chr1_2:13428237-13428256 Msa0057400:intron 45.0%
! CTGTGGGTCTACCTTTTGAT+GGG - chr1_2:13428281-13428300 Msa0057400:intron 45.0%
TGCCACTAAACACGGTGATA+GGG + chr1_2:13428465-13428484 None:intergenic 45.0%
TTGCCACTAAACACGGTGAT+AGG + chr1_2:13428466-13428485 None:intergenic 45.0%
TCTGCAGATTCTAGGTTTCC+CGG - chr1_2:13428550-13428569 Msa0057400:intron 45.0%
!! TCGTAATTTGCTAGCAGCAG+TGG + chr1_2:13428922-13428941 None:intergenic 45.0%
! ATTCTGCTTGGCACTGAACA+CGG - chr1_2:13428948-13428967 Msa0057400:intron 45.0%
CCATCATGGCAGTCAAAATC+GGG + chr1_2:13429018-13429037 None:intergenic 45.0%
TAGGAAGAGAGAGACCATCA+TGG + chr1_2:13429032-13429051 None:intergenic 45.0%
CTTCCTAGAACTCAAGAGCT+TGG - chr1_2:13429045-13429064 Msa0057400:intron 45.0%
AGACCAAGCTCTTGAGTTCT+AGG + chr1_2:13429051-13429070 None:intergenic 45.0%
AAGGGAGTAATGTATGTGGC+AGG - chr1_2:13429342-13429361 Msa0057400:intron 45.0%
AGGGAGTAATGTATGTGGCA+GGG - chr1_2:13429343-13429362 Msa0057400:intron 45.0%
GTAATGTATGTGGCAGGGAA+TGG - chr1_2:13429348-13429367 Msa0057400:intron 45.0%
! ATCTTTTAGCGATGGGGTTC+TGG - chr1_2:13429474-13429493 Msa0057400:intron 45.0%
AACACAATGTGTGACCGTTG+TGG + chr1_2:13429667-13429686 None:intergenic 45.0%
!!! GTGCACCCTTGTTTTACATG+TGG + chr1_2:13429690-13429709 None:intergenic 45.0%
ATCTCCAAGCTCTTGTCTAC+AGG + chr1_2:13429726-13429745 None:intergenic 45.0%
GCTTGGAGATATTAGGTGTC+TGG - chr1_2:13429736-13429755 Msa0057400:intron 45.0%
AGATATTAGGTGTCTGGCAC+TGG - chr1_2:13429742-13429761 Msa0057400:intron 45.0%
!! TGCTTCAGCTTGCTGTAGTA+TGG + chr1_2:13429833-13429852 None:intergenic 45.0%
CCAGCATAAGGACAAGTGTA+TGG + chr1_2:13429878-13429897 None:intergenic 45.0%
CCATACACTTGTCCTTATGC+TGG - chr1_2:13429875-13429894 Msa0057400:intron 45.0%
TTTGAGGGACGATCATAAGG+TGG - chr1_2:13429943-13429962 Msa0057400:intron 45.0%
GTAGCATTCTCTACTTCACG+CGG + chr1_2:13430016-13430035 None:intergenic 45.0%
TTAGCCGTCCAATCTTGATC+TGG + chr1_2:13430159-13430178 None:intergenic 45.0%
GCTGGAAAGCTTCAAAGTGA+AGG + chr1_2:13430444-13430463 None:intergenic 45.0%
!! CACTTTGAAGCTTTCCAGCT+AGG - chr1_2:13430445-13430464 Msa0057400:CDS 45.0%
CGAAGGAATGCCATGTAAAC+TGG + chr1_2:13430478-13430497 None:intergenic 45.0%
CATGGCATTCCTTCGTTTCA+TGG - chr1_2:13430483-13430502 Msa0057400:five_prime_UTR 45.0%
! GACTATCTCGAACTTTTCGG+TGG + chr1_2:13430609-13430628 None:intergenic 45.0%
GAACAACAGAATCCAGATGG+TGG - chr1_2:13430724-13430743 Msa0057400:five_prime_UTR 45.0%
ACAACAGAATCCAGATGGTG+GGG - chr1_2:13430726-13430745 Msa0057400:five_prime_UTR 45.0%
!! ATTAGTATTATTATATTATT+AGG + chr1_2:13429168-13429187 None:intergenic 5.0%
! TGCTCCAGGTTGAAAATGCG+AGG - chr1_2:13427475-13427494 Msa0057400:intron 50.0%
GGATTGCACTCCAAACCACT+TGG + chr1_2:13427674-13427693 None:intergenic 50.0%
! CCTCACGCAAGAGCTTTTTG+AGG + chr1_2:13427766-13427785 None:intergenic 50.0%
CCTCAAAAAGCTCTTGCGTG+AGG - chr1_2:13427763-13427782 Msa0057400:intron 50.0%
CGGAACACAGTGATCAACAG+AGG + chr1_2:13427878-13427897 None:intergenic 50.0%
! GCCGTTGAGTGGCAAGTTTT+AGG - chr1_2:13427897-13427916 Msa0057400:intron 50.0%
AGGCCAACAACCACATTGGA+AGG - chr1_2:13427917-13427936 Msa0057400:intron 50.0%
GAGTGGCATACCTTCCAATG+TGG + chr1_2:13427930-13427949 None:intergenic 50.0%
GGTTTAGGCTGATCTGTGAG+TGG + chr1_2:13427947-13427966 None:intergenic 50.0%
!! ACAGCCCTGCTAATGGGTTT+AGG + chr1_2:13427962-13427981 None:intergenic 50.0%
GAGTAAGACAGCCCTGCTAA+TGG + chr1_2:13427969-13427988 None:intergenic 50.0%
GGGGTTGTTGTGTAAGAGCA+GGG + chr1_2:13428008-13428027 None:intergenic 50.0%
TGGGGTTGTTGTGTAAGAGC+AGG + chr1_2:13428009-13428028 None:intergenic 50.0%
CTGAAAATCGTGGAGCGTGT+GGG + chr1_2:13428170-13428189 None:intergenic 50.0%
TCTGAAAATCGTGGAGCGTG+TGG + chr1_2:13428171-13428190 None:intergenic 50.0%
GTAGACCCACAGGCTAAAAG+TGG + chr1_2:13428273-13428292 None:intergenic 50.0%
CCATCAAAAGGTAGACCCAC+AGG + chr1_2:13428283-13428302 None:intergenic 50.0%
! CCTGTGGGTCTACCTTTTGA+TGG - chr1_2:13428280-13428299 Msa0057400:intron 50.0%
!! CTACCTTTTGATGGGTGTCG+AGG - chr1_2:13428289-13428308 Msa0057400:intron 50.0%
CTCCCTATCACCGTGTTTAG+TGG - chr1_2:13428460-13428479 Msa0057400:intron 50.0%
!! CGTAATTTGCTAGCAGACGG+TGG - chr1_2:13428493-13428512 Msa0057400:intron 50.0%
CTGCAGATTCTAGGTTTCCC+GGG - chr1_2:13428551-13428570 Msa0057400:intron 50.0%
AGATTCTAGGTTTCCCGGGT+CGG - chr1_2:13428555-13428574 Msa0057400:intron 50.0%
! TTGGCACTGAACACGGTGAT+AGG - chr1_2:13428955-13428974 Msa0057400:intron 50.0%
! TGGCACTGAACACGGTGATA+GGG - chr1_2:13428956-13428975 Msa0057400:intron 50.0%
!!! CCCGATTTTGACTGCCATGA+TGG - chr1_2:13429015-13429034 Msa0057400:intron 50.0%
CTATTGGTGTGCTCAACCAG+AGG + chr1_2:13429279-13429298 None:intergenic 50.0%
GCTTTCTTGCAGTGCCACAA+CGG - chr1_2:13429650-13429669 Msa0057400:intron 50.0%
CCAAGCTCTTGTCTACAGGT+CGG + chr1_2:13429722-13429741 None:intergenic 50.0%
! TAGGTGTCTGGCACTGGAAA+AGG - chr1_2:13429748-13429767 Msa0057400:intron 50.0%
GAGCACTCTGATCCAGCATA+AGG + chr1_2:13429890-13429909 None:intergenic 50.0%
CGTCCCTCAAATGTGCAACA+AGG + chr1_2:13429934-13429953 None:intergenic 50.0%
CATAAGGTGGACATGCACAC+AGG - chr1_2:13429956-13429975 Msa0057400:intron 50.0%
TGAAGCTTTCCAGCTAGGCA+TGG - chr1_2:13430450-13430469 Msa0057400:CDS 50.0%
AGGCATGGCTCCAGTTTACA+TGG - chr1_2:13430465-13430484 Msa0057400:exon 50.0%
TCTCGTCTCCCATGAAACGA+AGG + chr1_2:13430495-13430514 None:intergenic 50.0%
TTTCATGGGAGACGAGAACG+AGG - chr1_2:13430498-13430517 Msa0057400:five_prime_UTR 50.0%
GAACTATACCTACAGCCTCG+AGG - chr1_2:13430525-13430544 Msa0057400:five_prime_UTR 50.0%
TATACCTACAGCCTCGAGGT+TGG - chr1_2:13430529-13430548 Msa0057400:five_prime_UTR 50.0%
ATACCTACAGCCTCGAGGTT+GGG - chr1_2:13430530-13430549 Msa0057400:five_prime_UTR 50.0%
! TCATTTGGGAGGGTACACCA+CGG - chr1_2:13430569-13430588 Msa0057400:five_prime_UTR 50.0%
! GAACTTTTCGGTGGCTATCG+CGG + chr1_2:13430600-13430619 None:intergenic 50.0%
!! ATGGCCCTATTTTTCTCCGG+TGG - chr1_2:13430655-13430674 Msa0057400:five_prime_UTR 50.0%
TTTCTCCGGTGGTGATAGGA+AGG - chr1_2:13430666-13430685 Msa0057400:five_prime_UTR 50.0%
CAGTTCCTTCCTATCACCAC+CGG + chr1_2:13430674-13430693 None:intergenic 50.0%
GGTATACAAACCCCACCATC+TGG + chr1_2:13430739-13430758 None:intergenic 50.0%
!! CAAGGCTGGCCTACATCACA+GGG + chr1_2:13428104-13428123 None:intergenic 55.0%
!! TCAAGGCTGGCCTACATCAC+AGG + chr1_2:13428105-13428124 None:intergenic 55.0%
GTGATGTAGGCCAGCCTTGA+CGG - chr1_2:13428105-13428124 Msa0057400:intron 55.0%
TGATGTAGGCCAGCCTTGAC+GGG - chr1_2:13428106-13428125 Msa0057400:intron 55.0%
GGTCCTCGACACCCATCAAA+AGG + chr1_2:13428295-13428314 None:intergenic 55.0%
GATTCTAGGTTTCCCGGGTC+GGG - chr1_2:13428556-13428575 Msa0057400:intron 55.0%
! TCTGAATTTCGGGTCGGGAC+TGG + chr1_2:13428839-13428858 None:intergenic 55.0%
!! GCGATGGGGTTCTGGTTCAT+AGG - chr1_2:13429482-13429501 Msa0057400:intron 55.0%
CCGACCTGTAGACAAGAGCT+TGG - chr1_2:13429719-13429738 Msa0057400:intron 55.0%
! GGATCAGAGTGCTCTGCTGT+TGG - chr1_2:13429896-13429915 Msa0057400:intron 55.0%
AAACTGGAGCCATGCCTAGC+TGG + chr1_2:13430462-13430481 None:intergenic 55.0%
TACCTACAGCCTCGAGGTTG+GGG - chr1_2:13430531-13430550 Msa0057400:five_prime_UTR 55.0%
TTCCATTTGCCCCAACCTCG+AGG + chr1_2:13430543-13430562 None:intergenic 55.0%
CACTGTGTTCCGCCGTTGAG+TGG - chr1_2:13427886-13427905 Msa0057400:intron 60.0%
GACGGTGGAATCGTCGTGCT+AGG - chr1_2:13428508-13428527 Msa0057400:intron 60.0%
GGTGGAATCGTCGTGCTAGG+TGG - chr1_2:13428511-13428530 Msa0057400:intron 60.0%
GGAATCGTCGTGCTAGGTGG+TGG - chr1_2:13428514-13428533 Msa0057400:intron 60.0%
! TTGGGTTGTGTGACCCGACC+CGG + chr1_2:13428572-13428591 None:intergenic 60.0%
!! CGGGACTGGTTTCAATGGCC+TGG + chr1_2:13428825-13428844 None:intergenic 60.0%
!! CGGGTCGGGACTGGTTTCAA+TGG + chr1_2:13428830-13428849 None:intergenic 60.0%
TGGGAGACGAGAACGAGGCT+CGG - chr1_2:13430503-13430522 Msa0057400:five_prime_UTR 60.0%
AGCCTCGAGGTTGGGGCAAA+TGG - chr1_2:13430538-13430557 Msa0057400:five_prime_UTR 60.0%
TGGCTATCGCGGATACTCCG+TGG + chr1_2:13430589-13430608 None:intergenic 60.0%
!! AGGCCAGCCTTGACGGGCTA+TGG - chr1_2:13428112-13428131 Msa0057400:intron 65.0%
!! GGCCAGCCTTGACGGGCTAT+GGG - chr1_2:13428113-13428132 Msa0057400:intron 65.0%
!! CAGCCTTGACGGGCTATGGG+CGG - chr1_2:13428116-13428135 Msa0057400:intron 65.0%
TGGGTTGTGTGACCCGACCC+GGG + chr1_2:13428571-13428590 None:intergenic 65.0%
TGCCCCAACCTCGAGGCTGT+AGG + chr1_2:13430536-13430555 None:intergenic 65.0%
CGCCCATAGCCCGTCAAGGC+TGG + chr1_2:13428118-13428137 None:intergenic 70.0%
GGGCCGCCCATAGCCCGTCA+AGG + chr1_2:13428122-13428141 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 13425895 13430969 13425895 ID=Msa0057400;Name=Msa0057400
chr1_2 mRNA 13425895 13430969 13425895 ID=Msa0057400-mRNA-1;Parent=Msa0057400;Name=Msa0057400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=488|1|1|1|1|1|3|195|333
chr1_2 exon 13425895 13426452 13425895 ID=Msa0057400-mRNA-1:exon:5285;Parent=Msa0057400-mRNA-1
chr1_2 exon 13426816 13427202 13426816 ID=Msa0057400-mRNA-1:exon:5284;Parent=Msa0057400-mRNA-1
chr1_2 exon 13430230 13430969 13430230 ID=Msa0057400-mRNA-1:exon:5283;Parent=Msa0057400-mRNA-1
chr1_2 five_prime_UTR 13430482 13430969 13430482 ID=Msa0057400-mRNA-1:five_prime_utr;Parent=Msa0057400-mRNA-1
chr1_2 CDS 13430230 13430481 13430230 ID=Msa0057400-mRNA-1:cds;Parent=Msa0057400-mRNA-1
chr1_2 CDS 13426816 13427202 13426816 ID=Msa0057400-mRNA-1:cds;Parent=Msa0057400-mRNA-1
chr1_2 CDS 13426090 13426452 13426090 ID=Msa0057400-mRNA-1:cds;Parent=Msa0057400-mRNA-1
chr1_2 three_prime_UTR 13425895 13426089 13425895 ID=Msa0057400-mRNA-1:three_prime_utr;Parent=Msa0057400-mRNA-1
Gene Sequence

>Msa0057400

ATGGATTTGGATAGTATTGAGTGTGTTTCTTCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCTCATCATCAACAACATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACAATAATCATGGTGTTATTGGTTCTACTGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACCTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTTGCTGAATCACTCGAGTTACCATGCAAATACTACTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTAATTTCCTTGTTGCACATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAGGCTCGGAACTATACCTACAGCCTCGAGGTTGGGGCAAATGGAAGAAAACTCATTTGGGAGGGTACACCACGGAGTATCCGCGATAGCCACCGAAAAGTTCGAGATAGTCATGACGGCCTCATAATTCAACGAAATATGGCCCTATTTTTCTCCGGTGGTGATAGGAAGGAACTGAAATTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGGGTTTGTATACCAAATCTTTGCAGCTGA
Protein sequence

>Msa0057400

MDLDSIECVSSSDGMDEDEIQHRILHPHHQQHHHHSEFSSLKPRNGGNNNHGVIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS*