AlfalfaGEDB | Msa0097810

M. sativa cultivar zhongmu-4 / Msa0097810

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097810	G7IBC0	72.998	437	69	7	13	436	65	465	8.39e-179	517

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0097810	0.800056	1.723754e-48	-8.615850e-47
Msa0003700	Msa0097810	0.813213	2.868135e-51	-8.615850e-47
Msa0011930	Msa0097810	0.805275	1.443794e-49	-8.615850e-47
Msa0015390	Msa0097810	0.811657	6.272737e-51	-8.615850e-47
Msa0016670	Msa0097810	0.816502	5.351734e-52	-8.615850e-47
Msa0017510	Msa0097810	0.820250	7.574824e-53	-8.615850e-47
Msa0026130	Msa0097810	0.807880	4.071870e-50	-8.615850e-47
Msa0027230	Msa0097810	0.809572	1.770468e-50	-8.615850e-47
Msa0027260	Msa0097810	0.803880	2.822292e-49	-8.615850e-47
Msa0032920	Msa0097810	-0.821671	3.566067e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0097810	MtrunA17_Chr1g0152391	72.998	437	69	7	13	436	65	465	0.0	517

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 125 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGTGTAACCGTTTCT+AGG	0.349506	1_3:-3631811	Msa0097810:CDS
AAAGGAGGATCATCAACCAG+TGG	0.661881	1_3:-3631861	Msa0097810:CDS
AACAGGATTAGACCTAGAAA+CGG	0.582547	1_3:+3631799	None:intergenic
AACTATGGTATGAGAAAGAA+TGG	0.530677	1_3:-3630858	Msa0097810:CDS
AAGACTTGGGTGAAGAAGGA+TGG	0.598612	1_3:-3630723	Msa0097810:CDS
AAGCAGAAATCGTGGTGACT+CGG	0.532193	1_3:-3631663	Msa0097810:CDS
AAGCGTTGATCTGGATGGTA+AGG	0.522878	1_3:-3631156	Msa0097810:CDS
AAGGTGATGGCCATGGCCAT+GGG	0.564332	1_3:-3630815	Msa0097810:CDS
AATCGCCGCGGAAATCTTGA+GGG	0.520251	1_3:-3631380	Msa0097810:CDS
ACACCACAACCACTCCACGA+CGG	0.744561	1_3:+3631483	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCTAAGTCTAATCATTC+TGG	-	chr1_3:3631280-3631299	Msa0097810:CDS	30.0%
ATGAAGTTGAAGAGAAATTG+AGG	-	chr1_3:3631752-3631771	Msa0097810:CDS	30.0%
TGAAGTTGAAGAGAAATTGA+GGG	-	chr1_3:3631753-3631772	Msa0097810:CDS	30.0%
TTATCTGTGAAATCTGAGAA+TGG	-	chr1_3:3631778-3631797	Msa0097810:CDS	30.0%
AGGTTCAGAAAAATGAACTA+TGG	-	chr1_3:3631814-3631833	Msa0097810:CDS	30.0%
AACTATGGTATGAGAAAGAA+TGG	-	chr1_3:3631829-3631848	Msa0097810:CDS	30.0%
GTTTCTAAGTCTAATCATTC+TGG	-	chr1_3:3631280-3631299	Msa0097810:CDS	30.0%
ATGAAGTTGAAGAGAAATTG+AGG	-	chr1_3:3631752-3631771	Msa0097810:CDS	30.0%
TGAAGTTGAAGAGAAATTGA+GGG	-	chr1_3:3631753-3631772	Msa0097810:CDS	30.0%
TTATCTGTGAAATCTGAGAA+TGG	-	chr1_3:3631778-3631797	Msa0097810:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	3630698	3632011	3630698	ID=Msa0097810;Name=Msa0097810
chr1_3	mRNA	3630698	3632011	3630698	ID=Msa0097810-mRNA-1;Parent=Msa0097810;Name=Msa0097810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|437
chr1_3	exon	3630698	3632011	3630698	ID=Msa0097810-mRNA-1:exon:1166;Parent=Msa0097810-mRNA-1
chr1_3	CDS	3630698	3632011	3630698	ID=Msa0097810-mRNA-1:cds;Parent=Msa0097810-mRNA-1

Gene Sequence

>Msa0097810

ATGGAGGAGGAGAAGAAAGAAGAGAAGAAGAAGAAAGTTTATTCTCCTCTTCCTTCAAACTATGTTACTCTCGCTCAGCTTCAAGAGCGTTGGTTGAAGCAACAAAATGAAAAAAATCAACTAGAAAAAAAGGAGGATCATCAACCAGTGGATGAGCGACACGTGGCGGTTGTGGCTGAAACGAGTGTAACCGTTTCTAGGTCTAATCCTGTTGATCGAAACCGCGAAGACTCGGTGGATAACCGCCGTGCGGTGCATGTTGCTGTCGCCAATGAAGACGGCGGGAAATCGGTGACTGAAGCTGGAAGTGCTGATTATCGTAATCGAAGCAGAAATCGTGGTGACTCGGTGGAGAACCGCCGTGCGGTGGTTGTGAAGTCTGATGACAGCCGGAAATCAGTGACCGGAGCTGGAATCCGCGACGGTAACGCTGATAATGCAACTGATTCTAGGTTTATTGCTGTTGATCAGAATCGGCGTGGAAATCGCGACGACTCGGCGATTAACCGTCGTGGAGTGGTTGTGGTGTCTGAAGAGAATCGGAAACCTGTGACCGGAGATGGAATCGCTGATAATGCAACCGTTTCTAAGTCTAATCATTCTGGTCGTAATCGCCGCGGAAATCTTGAGGGTTTGGTGGAGAATCGTCGTGAAAACAGGAGGAAATCGGTGACCGAAGGTGTAAACGCTGGTAATGTAAGCGTTTCTAGGTCTAATGATGTTGATCGGAATCGCCGCGGAAATCTTGAGAGTTTGGTGGAGAATCGTCGTGAAATCGGCAAGGAGGATGAAGATGAGCAGAAATCGGTGACCGGAGATGGAATCGGCGATAGAAGCGTTGATCTGGATGGTAAGGTGGAGGAATCACAGAAGAAAAAGAAGAAGAAGATCAACCCACGGACGAGATGGAGACAGAACAAGAAGGCTAAGGAGAAGGAGGAGAGAAGAGCAATTGAAGAAGGTAGTGCTGCTAAGGAGGATGAAGTAGTTGCTGAGAAAACGAGTGTGAAAATCGAATTGAAAGATGAAGAGATTGTAGATTCGAAAACAGTTGATGAAGTTGAAGAGAAATTGAGGGTTTTATCTGTGAAATCTGAGAATGGAAAACAGAATTGGAGGTTCAGAAAAATGAACTATGGTATGAGAAAGAATGGTGATGGCGATGGTGACCATCAAGGTGATGGCCATGGCCATGGGCATAGACATAGCCATGGTCATGGTCATGGTGGCCATGGGCATAGGAATTTTAAGGAGCAACAAAGCTCTAAGACTTGGGTGAAGAAGGATGGCAGTGTTGGAGAAATTGAGACATAG

Protein sequence

>Msa0097810

MEEEKKEEKKKKVYSPLPSNYVTLAQLQERWLKQQNEKNQLEKKEDHQPVDERHVAVVAETSVTVSRSNPVDRNREDSVDNRRAVHVAVANEDGGKSVTEAGSADYRNRSRNRGDSVENRRAVVVKSDDSRKSVTGAGIRDGNADNATDSRFIAVDQNRRGNRDDSAINRRGVVVVSEENRKPVTGDGIADNATVSKSNHSGRNRRGNLEGLVENRRENRRKSVTEGVNAGNVSVSRSNDVDRNRRGNLESLVENRREIGKEDEDEQKSVTGDGIGDRSVDLDGKVEESQKKKKKKINPRTRWRQNKKAKEKEERRAIEEGSAAKEDEVVAEKTSVKIELKDEEIVDSKTVDEVEEKLRVLSVKSENGKQNWRFRKMNYGMRKNGDGDGDHQGDGHGHGHRHSHGHGHGGHGHRNFKEQQSSKTWVKKDGSVGEIET*