AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835280 MtrunA17_Chr5g0401071 100.000 184 0 0 1 184 1 184 1.50e-136 379
Msa0835280 MtrunA17_Chr5g0434561 82.967 182 31 0 1 182 1 182 7.04e-114 321
Msa0835280 MtrunA17_Chr4g0012371 90.909 165 15 0 20 184 1 165 9.16e-109 308
Msa0835280 MtrunA17_Chr4g0072861 36.813 182 112 2 1 182 1 179 9.97e-36 123
Msa0835280 MtrunA17_Chr7g0270301 33.152 184 120 2 1 184 1 181 4.54e-31 111
Msa0835280 MtrunA17_Chr2g0287721 32.787 183 110 2 2 178 7 182 1.11e-30 110
Msa0835280 MtrunA17_Chr6g0450081 32.609 184 121 2 1 184 1 181 1.52e-30 110
Msa0835280 MtrunA17_Chr1g0194261 32.065 184 122 2 1 184 1 181 3.06e-30 108
Msa0835280 MtrunA17_Chr5g0413451 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0835280 MtrunA17_Chr5g0413441 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0835280 MtrunA17_Chr5g0401761 33.735 166 109 1 11 176 9 173 9.52e-30 107
Msa0835280 MtrunA17_Chr4g0039591 29.651 172 120 1 5 176 3 173 4.16e-26 99.0
Msa0835280 MtrunA17_Chr8g0373271 33.735 166 106 3 20 183 17 180 4.26e-26 98.6
Msa0835280 MtrunA17_Chr5g0395641 30.387 181 123 2 5 183 3 182 4.82e-25 95.9
Msa0835280 MtrunA17_Chr1g0188111 35.811 148 82 2 14 155 12 152 8.89e-25 95.1
Msa0835280 MtrunA17_Chr5g0395631 29.801 151 105 1 5 155 3 152 3.04e-24 94.0
Msa0835280 MtrunA17_Chr2g0294701 31.443 194 119 3 1 181 1 193 3.86e-23 91.3
Msa0835280 MtrunA17_Chr7g0271761 36.601 153 95 2 1 152 1 152 8.95e-23 90.1
Msa0835280 MtrunA17_Chr4g0068171 31.073 177 109 2 17 181 18 193 1.12e-21 87.4
Msa0835280 MtrunA17_Chr4g0055651 28.994 169 110 5 20 183 9 172 1.33e-12 63.5
Msa0835280 MtrunA17_Chr7g0250531 30.189 159 101 5 20 173 9 162 1.19e-11 60.8
Msa0835280 MtrunA17_Chr2g0276931 28.402 169 111 5 20 183 10 173 2.20e-11 60.1
Msa0835280 MtrunA17_Chr7g0265001 30.675 163 97 8 24 177 21 176 3.54e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835280 AT3G49870.1 92.935 184 13 0 1 184 1 184 6.45e-127 354
Msa0835280 AT5G67560.1 92.308 182 14 0 1 182 1 182 1.85e-125 351
Msa0835280 AT5G37680.1 80.978 184 35 0 1 184 1 184 6.06e-115 324
Msa0835280 AT3G49870.2 92.727 165 12 0 20 184 1 165 1.85e-112 317
Msa0835280 AT3G49860.1 80.838 167 32 0 18 184 10 176 1.79e-98 282
Msa0835280 AT5G37680.2 78.832 137 29 0 48 184 1 137 6.53e-81 236
Msa0835280 AT2G24765.1 33.708 178 117 1 7 184 5 181 3.41e-33 117
Msa0835280 AT5G52210.1 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0835280 AT5G52210.2 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0835280 AT1G10630.1 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0835280 AT1G10630.2 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0835280 AT2G47170.2 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0835280 AT2G47170.1 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0835280 AT2G47170.3 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0835280 AT1G23490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.2 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.7 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.4 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.3 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.6 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT1G70490.5 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0835280 AT5G14670.2 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0835280 AT5G14670.3 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0835280 AT3G62290.3 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0835280 AT3G62290.1 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0835280 AT3G62290.2 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0835280 AT5G14670.1 32.240 183 121 2 1 183 1 180 1.80e-29 107
Msa0835280 AT3G03120.1 29.070 172 121 1 5 176 3 173 4.60e-26 99.0
Msa0835280 AT5G17060.2 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0835280 AT5G17060.1 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0835280 AT2G24765.2 35.484 124 79 1 7 130 5 127 5.23e-25 94.7
Msa0835280 AT2G15310.1 30.061 163 107 3 17 176 15 173 1.02e-24 95.9
Msa0835280 AT2G18390.1 33.133 166 107 3 20 183 17 180 4.24e-24 94.0
Msa0835280 AT3G22950.1 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0835280 AT3G22950.2 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0835280 AT3G03120.2 32.812 128 85 1 5 132 3 129 1.97e-23 90.5
Msa0835280 AT3G62560.1 36.765 136 85 1 17 152 18 152 1.97e-22 89.7
Msa0835280 AT1G56330.1 31.250 192 118 3 1 179 1 191 2.12e-22 89.7
Msa0835280 AT4G02080.1 36.054 147 92 2 7 152 7 152 4.66e-22 88.6
Msa0835280 AT1G09180.1 31.959 194 118 3 1 181 1 193 1.83e-20 84.3
Msa0835280 AT1G02440.1 25.137 183 118 4 13 181 11 188 3.08e-17 75.9
Msa0835280 AT1G02430.1 24.725 182 118 4 14 181 12 188 2.35e-16 73.6
Msa0835280 AT1G02430.2 26.712 146 102 2 14 154 12 157 1.02e-15 71.2
Msa0835280 AT1G43890.3 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0835280 AT1G43890.1 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0835280 AT1G43890.2 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0835280 AT1G02440.2 25.352 142 71 2 13 154 11 117 5.49e-11 57.8

Find 61 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGGTGGGATTAATTTA+AGG 0.222736 5_4:-8590432 None:intergenic
ATTGAGTGGTATCCCTTTAT+TGG 0.240394 5_4:+8589754 Msa0835280:CDS
CTTGATATGCTAAGATTATC+TGG 0.244755 5_4:-8589698 None:intergenic
TTGTTTCCCAACACCAATAA+AGG 0.252942 5_4:-8589767 None:intergenic
GAGATGGAGTTATCTCTTAT+AGG 0.305630 5_4:+8585597 Msa0835280:CDS
ACAATAAAGTTATGGGATCT+TGG 0.325152 5_4:+8588708 Msa0835280:CDS
AGTTTCTTAGCTCTTTGATT+TGG 0.349213 5_4:-8590099 None:intergenic
CAATAAAGTTATGGGATCTT+GGG 0.353435 5_4:+8588709 Msa0835280:CDS
AATGATTAGTCTTGTATGAT+TGG 0.354105 5_4:+8590238 Msa0835280:three_prime_UTR
AGATGGAGTTATCTCTTATA+GGG 0.367558 5_4:+8585598 Msa0835280:CDS
CCATCTCCTGCTTGAAGAAA+AGG 0.375686 5_4:-8585581 None:intergenic
GCTGGTCATTTGAAAGAAAC+AGG 0.376587 5_4:-8590400 None:intergenic
TTGTATGATTGGGAATTAAA+CGG 0.384038 5_4:+8590249 Msa0835280:three_prime_UTR
GCAATGTTACAATAAAGTTA+TGG 0.384617 5_4:+8588700 Msa0835280:CDS
TGCATGTCTAACTCTGAGAT+TGG 0.387642 5_4:+8590184 Msa0835280:three_prime_UTR
CAATGTTACAATAAAGTTAT+GGG 0.399340 5_4:+8588701 Msa0835280:CDS
AATTTAAGGCCACACATTGC+TGG 0.404845 5_4:-8590418 None:intergenic
GAGTGCAAAGCGAGGGAAGA+AGG 0.427399 5_4:+8584721 Msa0835280:five_prime_UTR
TGTATGATTGGGAATTAAAC+GGG 0.430307 5_4:+8590250 Msa0835280:three_prime_UTR
GGTATCCCTTTATTGGTGTT+GGG 0.432316 5_4:+8589761 Msa0835280:CDS
TGTTTCCCAACACCAATAAA+GGG 0.437850 5_4:-8589766 None:intergenic
ATGATTAGTCTTGTATGATT+GGG 0.442414 5_4:+8590239 Msa0835280:three_prime_UTR
TTTATCCTTTCCCTTTCCTC+AGG 0.449046 5_4:+8590207 Msa0835280:three_prime_UTR
TGGTATCCCTTTATTGGTGT+TGG 0.453471 5_4:+8589760 Msa0835280:CDS
CTTATAGGGCTTCAGAATGC+TGG 0.462107 5_4:+8585612 Msa0835280:CDS
TTACTAAGCACCTGAGGAAA+GGG 0.471210 5_4:-8590217 None:intergenic
TGCAGGTGGGATTCAATATG+AGG 0.498889 5_4:+8588664 Msa0835280:intron
CAAAGCGAGGGAAGAAGGAT+AGG 0.507495 5_4:+8584726 Msa0835280:five_prime_UTR
ACGGGATAAAATACATGTCA+AGG 0.525525 5_4:+8590268 Msa0835280:three_prime_UTR
TTACAGCAACAACATTTACA+AGG 0.527139 5_4:-8585644 None:intergenic
ACATCGACTCTGTTATTGAC+TGG 0.533756 5_4:+8590063 Msa0835280:CDS
AATATGAGGAAAGTAACAAA+AGG 0.537108 5_4:+8588678 Msa0835280:CDS
GGAAACAAGATTGACAAGGC+AGG 0.537382 5_4:+8589782 Msa0835280:CDS
ATTACTAAGCACCTGAGGAA+AGG 0.544169 5_4:-8590218 None:intergenic
CTCAATTCTGGATTTAGTAG+TGG 0.544172 5_4:+8590157 Msa0835280:three_prime_UTR
GAAACAAGATTGACAAGGCA+GGG 0.547885 5_4:+8589783 Msa0835280:CDS
CATGTCCTCGCTGTATCCAC+CGG 0.552693 5_4:-8585758 None:intergenic
AAAGGGATACCACTCAATGA+TGG 0.564623 5_4:-8589749 None:intergenic
AACCTAGGTTCCGTAGCATG+TGG 0.564867 5_4:+8588736 Msa0835280:CDS
AATAAAGTTATGGGATCTTG+GGG 0.566711 5_4:+8588710 Msa0835280:CDS
GCGAGGGAAGAAGGATAGGA+AGG 0.567798 5_4:+8584730 Msa0835280:five_prime_UTR
CGGGATAAAATACATGTCAA+GGG 0.576180 5_4:+8590269 Msa0835280:three_prime_UTR
GTCAATAACAGAGTCGATGT+TGG 0.577317 5_4:-8590060 None:intergenic
AGTAACGTTCCCACATGCTA+CGG 0.585403 5_4:-8588746 None:intergenic
TTCAAATGACCAGCAATGTG+TGG 0.602029 5_4:+8590409 Msa0835280:three_prime_UTR
TACAGCAACAACATTTACAA+GGG 0.602506 5_4:-8585643 None:intergenic
CTGAGCAAGCCATCATTGAG+TGG 0.608208 5_4:+8589740 Msa0835280:CDS
TAAAGTTATGGGATCTTGGG+GGG 0.613674 5_4:+8588712 Msa0835280:CDS
GTTTGTTTCATACACAATAG+CGG 0.619252 5_4:-8588781 None:intergenic
ACCTAGGTTCCGTAGCATGT+GGG 0.619889 5_4:+8588737 Msa0835280:CDS
CGATAATAGAGTGCAAAGCG+AGG 0.626433 5_4:+8584713 Msa0835280:five_prime_UTR
AAACAAGATTGACAAGGCAG+GGG 0.626437 5_4:+8589784 Msa0835280:CDS
ACGCGTATCTTACATTTGGT+CGG 0.630887 5_4:-8589828 None:intergenic
AAGCACCTGAGGAAAGGGAA+AGG 0.631811 5_4:-8590212 None:intergenic
TCCCACATGCTACGGAACCT+AGG 0.638908 5_4:-8588738 None:intergenic
GTGGGAACGTTACTGTCGTG+CGG 0.647989 5_4:+8588755 Msa0835280:CDS
GATAATAGAGTGCAAAGCGA+GGG 0.655867 5_4:+8584714 Msa0835280:five_prime_UTR
ATAAAGTTATGGGATCTTGG+GGG 0.665703 5_4:+8588711 Msa0835280:CDS
TAATCATTACTAAGCACCTG+AGG 0.669322 5_4:-8590223 None:intergenic
GTTGGGAAACAAGATTGACA+AGG 0.714570 5_4:+8589778 Msa0835280:CDS
TTAGACCGGTGGATACAGCG+AGG 0.780785 5_4:+8585753 Msa0835280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTATTGTGTATTAT+CGG + chr5_4:8590302-8590321 Msa0835280:three_prime_UTR 10.0%
!!! TTGTTTATTTTTTGTTGAAT+AGG + chr5_4:8584958-8584977 Msa0835280:intron 15.0%
!!! TGAATTTGTTTGTAATAATT+TGG + chr5_4:8585001-8585020 Msa0835280:intron 15.0%
!!! CTAAATTTTATTATTCACTT+GGG + chr5_4:8588567-8588586 Msa0835280:intron 15.0%
!!! TTGTTTATTTTAGTTTTTGT+TGG + chr5_4:8589064-8589083 Msa0835280:intron 15.0%
!!! TGTTTATTTTAGTTTTTGTT+GGG + chr5_4:8589065-8589084 Msa0835280:intron 15.0%
!! AAAAAAGAATACAAAATTGA+AGG - chr5_4:8589943-8589962 None:intergenic 15.0%
!!! TTTAGTTTGAGAAAAAACAA+TGG + chr5_4:8584876-8584895 Msa0835280:exon 20.0%
!!! TTAGTTTGAGAAAAAACAAT+GGG + chr5_4:8584877-8584896 Msa0835280:exon 20.0%
!! TGATTTACAAATCATATCAA+AGG - chr5_4:8585050-8585069 None:intergenic 20.0%
!!! GATATGATTTGTAAATCAAT+TGG + chr5_4:8585052-8585071 Msa0835280:intron 20.0%
!!! AAAATGATTTTTATCCCTAA+GGG - chr5_4:8585368-8585387 None:intergenic 20.0%
!!! AAAAATGATTTTTATCCCTA+AGG - chr5_4:8585369-8585388 None:intergenic 20.0%
!!! TATTTATATTGCTTTTAGAC+CGG + chr5_4:8585739-8585758 Msa0835280:intron 20.0%
!!! TAGAAAAAAGTTTGTTATTG+TGG + chr5_4:8585969-8585988 Msa0835280:intron 20.0%
!! TAATAAGCTATACGATAAAT+AGG + chr5_4:8586050-8586069 Msa0835280:intron 20.0%
!! TCAGTTATAACAATAGAAAT+AGG - chr5_4:8587236-8587255 None:intergenic 20.0%
!! ATTTCTATTGTTATAACTGA+CGG + chr5_4:8587236-8587255 Msa0835280:intron 20.0%
!!! TTTGAAATTTTTTCCTTACT+TGG + chr5_4:8587407-8587426 Msa0835280:intron 20.0%
!!! TTGAAATTTTTTCCTTACTT+GGG + chr5_4:8587408-8587427 Msa0835280:intron 20.0%
!! TTCAATTATTTGATACAGAT+GGG + chr5_4:8588097-8588116 Msa0835280:intron 20.0%
!! TAGTTAATTGTTATCAATCA+CGG - chr5_4:8588296-8588315 None:intergenic 20.0%
!!! TTTCCTGTATTTTTTTTAAC+GGG - chr5_4:8588439-8588458 None:intergenic 20.0%
!!! CTTTCCTGTATTTTTTTTAA+CGG - chr5_4:8588440-8588459 None:intergenic 20.0%
!! CCAAGTGAATAATAAAATTT+AGG - chr5_4:8588569-8588588 None:intergenic 20.0%
!!! CCTAAATTTTATTATTCACT+TGG + chr5_4:8588566-8588585 Msa0835280:intron 20.0%
!! CAATGTTACAATAAAGTTAT+GGG + chr5_4:8588701-8588720 Msa0835280:CDS 20.0%
!! AAGAATAATATTAAGGCTTT+AGG - chr5_4:8589026-8589045 None:intergenic 20.0%
!! AATCAGCAAGAATAATATTA+AGG - chr5_4:8589033-8589052 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTTGTTG+GGG + chr5_4:8589066-8589085 Msa0835280:intron 20.0%
!! TAAATAAACAAGGTAAAATC+TGG - chr5_4:8589103-8589122 None:intergenic 20.0%
!! AAAAAGAATAACTCAACAAT+TGG - chr5_4:8589129-8589148 None:intergenic 20.0%
!!! ATTTTATTCATTAACTTCCT+AGG - chr5_4:8589898-8589917 None:intergenic 20.0%
!!! TGTATTCTTTTTTATCTGTT+TGG + chr5_4:8589950-8589969 Msa0835280:intron 20.0%
!!! ATTTTTTGTTGAATAGGTTC+TGG + chr5_4:8584964-8584983 Msa0835280:intron 25.0%
! TACTGCTAATATCAAAGTTT+CGG - chr5_4:8585094-8585113 None:intergenic 25.0%
! AACCATTTCTATAATCAAAG+AGG + chr5_4:8585194-8585213 Msa0835280:intron 25.0%
! ACCATTTCTATAATCAAAGA+GGG + chr5_4:8585195-8585214 Msa0835280:intron 25.0%
! AATTAAGTGCTATGTGAAAA+GGG - chr5_4:8585430-8585449 None:intergenic 25.0%
! AAATTAAGTGCTATGTGAAA+AGG - chr5_4:8585431-8585450 None:intergenic 25.0%
!! TAGCACTTAATTTCAGTTTT+AGG + chr5_4:8585438-8585457 Msa0835280:intron 25.0%
! CTAACACAAACAAATAGAAT+AGG - chr5_4:8585831-8585850 None:intergenic 25.0%
! ATGATTAGAAGGATTCATTA+GGG + chr5_4:8586007-8586026 Msa0835280:intron 25.0%
! TATACGATAAATAGGAATCA+GGG + chr5_4:8586058-8586077 Msa0835280:intron 25.0%
! GAGTAATAAAAATTGGATGA+AGG - chr5_4:8586219-8586238 None:intergenic 25.0%
! CACATTAGAAGGAAAAAATT+GGG + chr5_4:8586443-8586462 Msa0835280:intron 25.0%
! AAACTGATGTGTTCAAAAAT+GGG - chr5_4:8586878-8586897 None:intergenic 25.0%
! TAAACTGATGTGTTCAAAAA+TGG - chr5_4:8586879-8586898 None:intergenic 25.0%
!! TTTTGAACACATCAGTTTAT+AGG + chr5_4:8586880-8586899 Msa0835280:intron 25.0%
! ATATCTTTGCAAATAGCTTT+AGG - chr5_4:8587044-8587063 None:intergenic 25.0%
! TATTTGCAAAGATATCAGTT+TGG + chr5_4:8587049-8587068 Msa0835280:intron 25.0%
!! CTGTATAATACCAATTTTCA+CGG + chr5_4:8587439-8587458 Msa0835280:intron 25.0%
!! TGTATAATACCAATTTTCAC+GGG + chr5_4:8587440-8587459 Msa0835280:intron 25.0%
! ACATCAACTTAAACATCATT+TGG + chr5_4:8587558-8587577 Msa0835280:intron 25.0%
! TAACATCATGCTACATATTT+GGG - chr5_4:8587702-8587721 None:intergenic 25.0%
! ATAACATCATGCTACATATT+TGG - chr5_4:8587703-8587722 None:intergenic 25.0%
! AAATATGTAGCATGATGTTA+TGG + chr5_4:8587702-8587721 Msa0835280:intron 25.0%
! AATATGTAGCATGATGTTAT+GGG + chr5_4:8587703-8587722 Msa0835280:intron 25.0%
!! ATTTGTTTGATAACCTGATA+AGG - chr5_4:8587729-8587748 None:intergenic 25.0%
! TATCAGGTTATCAAACAAAT+AGG + chr5_4:8587729-8587748 Msa0835280:intron 25.0%
! CAGATAAAATACATGCAATA+TGG - chr5_4:8587800-8587819 None:intergenic 25.0%
!! TATTGCATGTATTTTATCTG+AGG + chr5_4:8587800-8587819 Msa0835280:intron 25.0%
! GTTCAATTATTTGATACAGA+TGG + chr5_4:8588096-8588115 Msa0835280:intron 25.0%
! TTGTTCCACAATATGATATT+TGG + chr5_4:8588200-8588219 Msa0835280:intron 25.0%
! TAGTACCAAATATCATATTG+TGG - chr5_4:8588208-8588227 None:intergenic 25.0%
! TTGGTACTATTGTCAAATAA+TGG + chr5_4:8588219-8588238 Msa0835280:intron 25.0%
! TGGTACTATTGTCAAATAAT+GGG + chr5_4:8588220-8588239 Msa0835280:intron 25.0%
! AGGATCAGTTTGATTAATTA+AGG + chr5_4:8588342-8588361 Msa0835280:intron 25.0%
! AAGTCAATATGTACTTCAAA+GGG - chr5_4:8588491-8588510 None:intergenic 25.0%
! AAAGTCAATATGTACTTCAA+AGG - chr5_4:8588492-8588511 None:intergenic 25.0%
! AATATGAGGAAAGTAACAAA+AGG + chr5_4:8588678-8588697 Msa0835280:CDS 25.0%
! GCAATGTTACAATAAAGTTA+TGG + chr5_4:8588700-8588719 Msa0835280:CDS 25.0%
! CAATTGGTTGTAAATAAACA+AGG - chr5_4:8589113-8589132 None:intergenic 25.0%
! TTTCAACATATAAAAACACC+AGG - chr5_4:8589222-8589241 None:intergenic 25.0%
!!! ACCTTTTTTCTGTTGAAAAT+TGG + chr5_4:8589494-8589513 Msa0835280:intron 25.0%
!!! CCTTTTTTCTGTTGAAAATT+GGG + chr5_4:8589495-8589514 Msa0835280:intron 25.0%
! AAAGAATACAAAATTGAAGG+AGG - chr5_4:8589940-8589959 None:intergenic 25.0%
!! TGAACTTTGATGTAATTTTG+TGG + chr5_4:8590131-8590150 Msa0835280:three_prime_UTR 25.0%
!! GAACTTTGATGTAATTTTGT+GGG + chr5_4:8590132-8590151 Msa0835280:three_prime_UTR 25.0%
!! AACTTTGATGTAATTTTGTG+GGG + chr5_4:8590133-8590152 Msa0835280:three_prime_UTR 25.0%
!!! AATGATTAGTCTTGTATGAT+TGG + chr5_4:8590238-8590257 Msa0835280:three_prime_UTR 25.0%
!!! ATGATTAGTCTTGTATGATT+GGG + chr5_4:8590239-8590258 Msa0835280:three_prime_UTR 25.0%
! TTGTATGATTGGGAATTAAA+CGG + chr5_4:8590249-8590268 Msa0835280:three_prime_UTR 25.0%
AGAAAAAACAATGGGATTGT+GGG + chr5_4:8584885-8584904 Msa0835280:exon 30.0%
TTGGGTAATCAGCTTAATTA+AGG + chr5_4:8585133-8585152 Msa0835280:intron 30.0%
TGGGTAATCAGCTTAATTAA+GGG + chr5_4:8585134-8585153 Msa0835280:intron 30.0%
TCCCTCTTTGATTATAGAAA+TGG - chr5_4:8585199-8585218 None:intergenic 30.0%
AAGCAGATTAATGCAATCAA+AGG - chr5_4:8585406-8585425 None:intergenic 30.0%
!!! TTTCAGTTTTAGGTTGTCTT+TGG + chr5_4:8585448-8585467 Msa0835280:intron 30.0%
TCAAAATGCATGAGCTTATT+AGG + chr5_4:8585535-8585554 Msa0835280:intron 30.0%
AGATGGAGTTATCTCTTATA+GGG + chr5_4:8585598-8585617 Msa0835280:CDS 30.0%
TACAGCAACAACATTTACAA+GGG - chr5_4:8585646-8585665 None:intergenic 30.0%
TTACAGCAACAACATTTACA+AGG - chr5_4:8585647-8585666 None:intergenic 30.0%
! TTTGTTTGTGTTAGTCTGTT+AGG + chr5_4:8585837-8585856 Msa0835280:intron 30.0%
! TTGTTTGTGTTAGTCTGTTA+GGG + chr5_4:8585838-8585857 Msa0835280:intron 30.0%
CAGATAGTTAATACATACGT+GGG + chr5_4:8585940-8585959 Msa0835280:intron 30.0%
GATGATTAGAAGGATTCATT+AGG + chr5_4:8586006-8586025 Msa0835280:intron 30.0%
CTATACGATAAATAGGAATC+AGG + chr5_4:8586057-8586076 Msa0835280:intron 30.0%
CTCTTCAATGAATAATGCAA+AGG + chr5_4:8586172-8586191 Msa0835280:intron 30.0%
! TCCAATTTTTATTACTCCCT+CGG + chr5_4:8586222-8586241 Msa0835280:intron 30.0%
GCACATTAGAAGGAAAAAAT+TGG + chr5_4:8586442-8586461 Msa0835280:intron 30.0%
TGGTAGATTGACTATTACAT+AGG + chr5_4:8586638-8586657 Msa0835280:intron 30.0%
GGTAGATTGACTATTACATA+GGG + chr5_4:8586639-8586658 Msa0835280:intron 30.0%
TTATATCCAGTATCACTGAT+TGG + chr5_4:8586696-8586715 Msa0835280:intron 30.0%
! TATAGCGGAAATGAGAATTA+GGG - chr5_4:8586783-8586802 None:intergenic 30.0%
TGTGTTCAAAAATGGGATTT+GGG - chr5_4:8586871-8586890 None:intergenic 30.0%
ATGTGTTCAAAAATGGGATT+TGG - chr5_4:8586872-8586891 None:intergenic 30.0%
CAGTTTATAGGAACTACAAA+TGG + chr5_4:8586892-8586911 Msa0835280:intron 30.0%
TTATAGGAACTACAAATGGT+TGG + chr5_4:8586896-8586915 Msa0835280:intron 30.0%
!! TTGCAAATAGCTTTAGGAAT+AGG - chr5_4:8587038-8587057 None:intergenic 30.0%
TATCAGTTTGGACTTCATTA+AGG + chr5_4:8587061-8587080 Msa0835280:intron 30.0%
TGCATTAAAATGCTCCTATT+TGG + chr5_4:8587158-8587177 Msa0835280:intron 30.0%
! TTTTTGCGTGAGAATTAGTT+AGG + chr5_4:8587199-8587218 Msa0835280:intron 30.0%
TGAGAATTAGTTAGGTTACT+TGG + chr5_4:8587207-8587226 Msa0835280:intron 30.0%
GAGAATTAGTTAGGTTACTT+GGG + chr5_4:8587208-8587227 Msa0835280:intron 30.0%
! GAGAGATTTTCAATACATAC+AGG + chr5_4:8587295-8587314 Msa0835280:intron 30.0%
GACTTGATATACAGAAATGA+AGG + chr5_4:8587532-8587551 Msa0835280:intron 30.0%
AACTTAAACATCATTTGGCA+GGG + chr5_4:8587563-8587582 Msa0835280:intron 30.0%
ATTGTCCATTGTGTATACAA+GGG + chr5_4:8587650-8587669 Msa0835280:intron 30.0%
AACATCATGCTACATATTTG+GGG - chr5_4:8587701-8587720 None:intergenic 30.0%
AGATTTGTCAGTATAGATGA+TGG + chr5_4:8587908-8587927 Msa0835280:intron 30.0%
TGATCTGATTATAATAGACC+AGG + chr5_4:8587933-8587952 Msa0835280:intron 30.0%
! GATTATAATAGACCAGGTTT+TGG + chr5_4:8587939-8587958 Msa0835280:intron 30.0%
TGATCTGATTATAATAGACC+AGG + chr5_4:8587933-8587952 Msa0835280:intron 30.0%
GATTATAATAGACCAGGTTT+CGG + chr5_4:8587939-8587958 Msa0835280:intron 30.0%
AATTATTTGATACAGATGGG+AGG + chr5_4:8588100-8588119 Msa0835280:intron 30.0%
GGTAGTTCAGTGTTAAATAA+CGG + chr5_4:8588126-8588145 Msa0835280:intron 30.0%
TCAGTGTTAAATAACGGTTA+TGG + chr5_4:8588132-8588151 Msa0835280:intron 30.0%
!!! CAGTTTTTTTAGCAGTTAGA+AGG + chr5_4:8588322-8588341 Msa0835280:intron 30.0%
AAGATGGTACTGTATAGATT+AGG + chr5_4:8588382-8588401 Msa0835280:intron 30.0%
GTATAGATTAGGATCTAAGT+AGG + chr5_4:8588393-8588412 Msa0835280:intron 30.0%
GATCCCGTTAAAAAAAATAC+AGG + chr5_4:8588433-8588452 Msa0835280:intron 30.0%
! ATGAAGTTTTCTATCTCTCA+AGG + chr5_4:8588608-8588627 Msa0835280:intron 30.0%
! TGAAGTTTTCTATCTCTCAA+GGG + chr5_4:8588609-8588628 Msa0835280:intron 30.0%
ACAATAAAGTTATGGGATCT+TGG + chr5_4:8588708-8588727 Msa0835280:CDS 30.0%
CAATAAAGTTATGGGATCTT+GGG + chr5_4:8588709-8588728 Msa0835280:CDS 30.0%
AATAAAGTTATGGGATCTTG+GGG + chr5_4:8588710-8588729 Msa0835280:CDS 30.0%
GTTTGTTTCATACACAATAG+CGG - chr5_4:8588784-8588803 None:intergenic 30.0%
GAAACAAACTTCTTATCTTC+TGG + chr5_4:8588795-8588814 Msa0835280:intron 30.0%
TAGTTGAGCATAACTATGTT+CGG - chr5_4:8589163-8589182 None:intergenic 30.0%
ACATATAAAAACACCAGGAA+AGG - chr5_4:8589217-8589236 None:intergenic 30.0%
!!! TTCTCTACGCTTTTTCATAT+AGG - chr5_4:8589254-8589273 None:intergenic 30.0%
!! TTAACGAAATCGATTTGTAC+AGG - chr5_4:8589282-8589301 None:intergenic 30.0%
CTTGATTATCTCACAAAATG+TGG + chr5_4:8589372-8589391 Msa0835280:intron 30.0%
! CAATTCTGAAAAGTCTTGAT+TGG + chr5_4:8589445-8589464 Msa0835280:intron 30.0%
! CCCAATTTTCAACAGAAAAA+AGG - chr5_4:8589498-8589517 None:intergenic 30.0%
ACAAATGCAATAGATCTAAG+AGG - chr5_4:8589541-8589560 None:intergenic 30.0%
! GATCTATTGCATTTGTCTTT+TGG + chr5_4:8589545-8589564 Msa0835280:intron 30.0%
!!! ATGCATTTTTTCTCTTTAGC+TGG + chr5_4:8589595-8589614 Msa0835280:intron 30.0%
TTATCTGAATTCGTGAAACT+TGG + chr5_4:8589624-8589643 Msa0835280:intron 30.0%
CTTGATATGCTAAGATTATC+TGG - chr5_4:8589701-8589720 None:intergenic 30.0%
TCTTAACAGCCAGAATAAAA+GGG - chr5_4:8589854-8589873 None:intergenic 30.0%
! AGTTTCTTAGCTCTTTGATT+TGG - chr5_4:8590102-8590121 None:intergenic 30.0%
TGTATGATTGGGAATTAAAC+GGG + chr5_4:8590250-8590269 Msa0835280:three_prime_UTR 30.0%
GAGAAAAAACAATGGGATTG+TGG + chr5_4:8584884-8584903 Msa0835280:exon 35.0%
!! ATTAGCAGTATCGACGTATT+AGG + chr5_4:8585104-8585123 Msa0835280:intron 35.0%
!! TTAGCAGTATCGACGTATTA+GGG + chr5_4:8585105-8585124 Msa0835280:intron 35.0%
CAGCTTAATTAAGGGCTTAT+TGG + chr5_4:8585142-8585161 Msa0835280:intron 35.0%
CTATAATCAAAGAGGGAATG+CGG + chr5_4:8585202-8585221 Msa0835280:intron 35.0%
CGGTCAAACTGTATTTATGT+AGG + chr5_4:8585222-8585241 Msa0835280:intron 35.0%
GAGATGGAGTTATCTCTTAT+AGG + chr5_4:8585597-8585616 Msa0835280:CDS 35.0%
!! TTATATTGCTTTTAGACCGG+TGG + chr5_4:8585742-8585761 Msa0835280:intron 35.0%
! TCTGTTAGGGTATTAGCAAA+TGG + chr5_4:8585851-8585870 Msa0835280:intron 35.0%
! CTGTTAGGGTATTAGCAAAT+GGG + chr5_4:8585852-8585871 Msa0835280:intron 35.0%
! TGTTAGGGTATTAGCAAATG+GGG + chr5_4:8585853-8585872 Msa0835280:intron 35.0%
TATACGAGAAGTAAGAGTAG+TGG + chr5_4:8585908-8585927 Msa0835280:intron 35.0%
CCACGTATGTATTAACTATC+TGG - chr5_4:8585942-8585961 None:intergenic 35.0%
CCAGATAGTTAATACATACG+TGG + chr5_4:8585939-8585958 Msa0835280:intron 35.0%
!! AGTTTGTTATTGTGGTAGTC+AGG + chr5_4:8585977-8585996 Msa0835280:intron 35.0%
! ACACTGACTACTTTCATTGA+TGG - chr5_4:8586323-8586342 None:intergenic 35.0%
TGATGCTAATATTCTACCGT+TGG - chr5_4:8586411-8586430 None:intergenic 35.0%
TATTAGCATCAAGCAGCTTA+TGG + chr5_4:8586420-8586439 Msa0835280:intron 35.0%
TTAGAAGGAAAAAATTGGGC+TGG + chr5_4:8586447-8586466 Msa0835280:intron 35.0%
GAAGATCATGATGAAACCAT+CGG + chr5_4:8586475-8586494 Msa0835280:intron 35.0%
!!! CTAGGTTTTGGCTAAAAAAG+TGG + chr5_4:8586594-8586613 Msa0835280:intron 35.0%
TTGACTATTACATAGGGAAG+AGG + chr5_4:8586645-8586664 Msa0835280:intron 35.0%
ATTACATAGGGAAGAGGTTA+AGG + chr5_4:8586651-8586670 Msa0835280:intron 35.0%
CTGGATATAAGATCAAGAGA+TGG - chr5_4:8586686-8586705 None:intergenic 35.0%
TAAGACCTTGAGAAAAACTC+TGG + chr5_4:8586741-8586760 Msa0835280:intron 35.0%
! GTATAGCGGAAATGAGAATT+AGG - chr5_4:8586784-8586803 None:intergenic 35.0%
TTTCCGCTATACTAATGAGT+AGG + chr5_4:8586792-8586811 Msa0835280:intron 35.0%
TTCCGCTATACTAATGAGTA+GGG + chr5_4:8586793-8586812 Msa0835280:intron 35.0%
GCTAGCACAGTAATTAGTAA+TGG - chr5_4:8586955-8586974 None:intergenic 35.0%
! ACTTAATGCACTGACAAGTA+TGG - chr5_4:8586980-8586999 None:intergenic 35.0%
!! ATAGCTTTAGGAATAGGAAG+AGG - chr5_4:8587032-8587051 None:intergenic 35.0%
CAACTTAAACATCATTTGGC+AGG + chr5_4:8587562-8587581 Msa0835280:intron 35.0%
CTTGTATACACAATGGACAA+TGG - chr5_4:8587651-8587670 None:intergenic 35.0%
CATTGTCCATTGTGTATACA+AGG + chr5_4:8587649-8587668 Msa0835280:intron 35.0%
!! GCATGTATTTTATCTGAGGT+AGG + chr5_4:8587804-8587823 Msa0835280:intron 35.0%
!! ATTTTATCTGAGGTAGGTCT+TGG + chr5_4:8587810-8587829 Msa0835280:intron 35.0%
!! TTTTATCTGAGGTAGGTCTT+GGG + chr5_4:8587811-8587830 Msa0835280:intron 35.0%
TGTTATCTACTGACATCAAG+AGG + chr5_4:8587854-8587873 Msa0835280:intron 35.0%
! TTTCGGTGTAGATATTCTAC+AGG + chr5_4:8587987-8588006 Msa0835280:intron 35.0%
! TTCGGTGTAGATATTCTACA+GGG + chr5_4:8587988-8588007 Msa0835280:intron 35.0%
!! TTTTGAAGGTGCATACAAGA+AGG + chr5_4:8588055-8588074 Msa0835280:intron 35.0%
GTGTTAAATAACGGTTATGG+CGG + chr5_4:8588135-8588154 Msa0835280:intron 35.0%
GCTATAGCAATGTATCATAG+CGG + chr5_4:8588159-8588178 Msa0835280:intron 35.0%
ACAAAGTCATAGTTGCAAGA+TGG + chr5_4:8588366-8588385 Msa0835280:intron 35.0%
! AGTAGTTCTGCTGTGTAATA+AGG + chr5_4:8588458-8588477 Msa0835280:intron 35.0%
ATCTGTTCTTATCTGATTGC+AGG + chr5_4:8588647-8588666 Msa0835280:intron 35.0%
ATAAAGTTATGGGATCTTGG+GGG + chr5_4:8588711-8588730 Msa0835280:CDS 35.0%
! AAGGTAAAATCTGGTAGTGA+TGG - chr5_4:8589094-8589113 None:intergenic 35.0%
AGTTGAGCATAACTATGTTC+GGG - chr5_4:8589162-8589181 None:intergenic 35.0%
ACATAGTTATGCTCAACTAC+TGG + chr5_4:8589164-8589183 Msa0835280:intron 35.0%
!!! TGCTCAACTACTGGTTTTTT+AGG + chr5_4:8589173-8589192 Msa0835280:intron 35.0%
! CAAGACTTTTCAGAATTGAG+CGG - chr5_4:8589443-8589462 None:intergenic 35.0%
ATTGAGTGGTATCCCTTTAT+TGG + chr5_4:8589754-8589773 Msa0835280:CDS 35.0%
TGTTTCCCAACACCAATAAA+GGG - chr5_4:8589769-8589788 None:intergenic 35.0%
TTGTTTCCCAACACCAATAA+AGG - chr5_4:8589770-8589789 None:intergenic 35.0%
CTCTTAACAGCCAGAATAAA+AGG - chr5_4:8589855-8589874 None:intergenic 35.0%
!! AGAGCAATAACGGATTAAAG+TGG + chr5_4:8589871-8589890 Msa0835280:intron 35.0%
CTCAATTCTGGATTTAGTAG+TGG + chr5_4:8590157-8590176 Msa0835280:three_prime_UTR 35.0%
TAATCATTACTAAGCACCTG+AGG - chr5_4:8590226-8590245 None:intergenic 35.0%
ACGGGATAAAATACATGTCA+AGG + chr5_4:8590268-8590287 Msa0835280:three_prime_UTR 35.0%
CGGGATAAAATACATGTCAA+GGG + chr5_4:8590269-8590288 Msa0835280:three_prime_UTR 35.0%
! CACAGAATTTCTTTTGTGAG+AGG + chr5_4:8590347-8590366 Msa0835280:three_prime_UTR 35.0%
! TCTTTTGTGAGAGGAATTGA+TGG + chr5_4:8590356-8590375 Msa0835280:three_prime_UTR 35.0%
GATAATAGAGTGCAAAGCGA+GGG + chr5_4:8584714-8584733 Msa0835280:five_prime_UTR 40.0%
GCACTTGGAAGAGCTTATTT+AGG - chr5_4:8585344-8585363 None:intergenic 40.0%
AAAGTGATCCACTTAGCACA+GGG - chr5_4:8585513-8585532 None:intergenic 40.0%
CGTGAAGCATAACTTACTGT+AGG - chr5_4:8585787-8585806 None:intergenic 40.0%
! GAGAAGTAAGAGTAGTGGAA+AGG + chr5_4:8585913-8585932 Msa0835280:intron 40.0%
TATTGTGGTAGTCAGGACTT+AGG + chr5_4:8585984-8586003 Msa0835280:intron 40.0%
CAGGACTTAGGATGATTAGA+AGG + chr5_4:8585996-8586015 Msa0835280:intron 40.0%
ACGATAAATAGGAATCAGGG+AGG + chr5_4:8586061-8586080 Msa0835280:intron 40.0%
AGTTCAAGACAACCAACTGA+GGG - chr5_4:8586149-8586168 None:intergenic 40.0%
AAGTTCAAGACAACCAACTG+AGG - chr5_4:8586150-8586169 None:intergenic 40.0%
GCCGAGGGAGTAATAAAAAT+TGG - chr5_4:8586226-8586245 None:intergenic 40.0%
CATAACACCGGATTAACACT+TGG + chr5_4:8586361-8586380 Msa0835280:intron 40.0%
AAGTCTGCCAAGTGTTAATC+CGG - chr5_4:8586371-8586390 None:intergenic 40.0%
! AACACTTGGCAGACTTTTGA+TGG + chr5_4:8586375-8586394 Msa0835280:intron 40.0%
!!! GGAAAAAATTGGGCTGGTTT+TGG + chr5_4:8586453-8586472 Msa0835280:intron 40.0%
AATCTACCACCTTGTTAGAG+GGG - chr5_4:8586627-8586646 None:intergenic 40.0%
CAATCTACCACCTTGTTAGA+GGG - chr5_4:8586628-8586647 None:intergenic 40.0%
TCAATCTACCACCTTGTTAG+AGG - chr5_4:8586629-8586648 None:intergenic 40.0%
AGTCAACCAATCAGTGATAC+TGG - chr5_4:8586705-8586724 None:intergenic 40.0%
! TATCACTGATTGGTTGACTG+AGG + chr5_4:8586706-8586725 Msa0835280:intron 40.0%
! GTCATCCAGAGTTTTTCTCA+AGG - chr5_4:8586749-8586768 None:intergenic 40.0%
AATGAGAATTAGGGTCCTTC+TGG - chr5_4:8586774-8586793 None:intergenic 40.0%
TCCGCTATACTAATGAGTAG+GGG + chr5_4:8586794-8586813 Msa0835280:intron 40.0%
TCCCCTACTCATTAGTATAG+CGG - chr5_4:8586798-8586817 None:intergenic 40.0%
GGACTTCATTAAGGTTGTTG+AGG + chr5_4:8587070-8587089 Msa0835280:intron 40.0%
CCAGTATGGTATCATATCGT+TGG - chr5_4:8587097-8587116 None:intergenic 40.0%
CCAACGATATGATACCATAC+TGG + chr5_4:8587094-8587113 Msa0835280:intron 40.0%
ACGATATGATACCATACTGG+TGG + chr5_4:8587097-8587116 Msa0835280:intron 40.0%
CTCCTATTTGGAAAGAGTTG+TGG + chr5_4:8587170-8587189 Msa0835280:intron 40.0%
TGCCACAACTCTTTCCAAAT+AGG - chr5_4:8587175-8587194 None:intergenic 40.0%
TCATGAGCATGAGCAAATTC+TGG + chr5_4:8587269-8587288 Msa0835280:intron 40.0%
AGGACTGTTGAATCAGACAT+TGG + chr5_4:8587345-8587364 Msa0835280:intron 40.0%
ATTTCACTTCAGAGCAGCAA+AGG + chr5_4:8587383-8587402 Msa0835280:intron 40.0%
TTTCACTTCAGAGCAGCAAA+GGG + chr5_4:8587384-8587403 Msa0835280:intron 40.0%
ACCATTCAAGGTGGTTTATG+TGG + chr5_4:8587477-8587496 Msa0835280:intron 40.0%
ACCACATAAACCACCTTGAA+TGG - chr5_4:8587481-8587500 None:intergenic 40.0%
ACAATGGACAATGGCTTTCT+TGG - chr5_4:8587642-8587661 None:intergenic 40.0%
CCTATCCCTTGTATACACAA+TGG - chr5_4:8587658-8587677 None:intergenic 40.0%
CCATTGTGTATACAAGGGAT+AGG + chr5_4:8587655-8587674 Msa0835280:intron 40.0%
! ATGATGTTATGGGCCTTATC+AGG + chr5_4:8587713-8587732 Msa0835280:intron 40.0%
! TTTATCTGAGGTAGGTCTTG+GGG + chr5_4:8587812-8587831 Msa0835280:intron 40.0%
AATCAGATCAGACCAAAACC+TGG - chr5_4:8587954-8587973 None:intergenic 40.0%
AGAATATCTACACCGAAACC+TGG - chr5_4:8587985-8588004 None:intergenic 40.0%
ACAGGGTTAATGTTAGTGAC+AGG + chr5_4:8588005-8588024 Msa0835280:intron 40.0%
TTAATGTTAGTGACAGGCAG+TGG + chr5_4:8588011-8588030 Msa0835280:intron 40.0%
TTTGATACAGATGGGAGGAA+CGG + chr5_4:8588105-8588124 Msa0835280:intron 40.0%
GTAGGATTCGAGAACAGAAA+CGG + chr5_4:8588411-8588430 Msa0835280:intron 40.0%
TGTTCTTATCTGATTGCAGG+TGG + chr5_4:8588650-8588669 Msa0835280:intron 40.0%
GTTCTTATCTGATTGCAGGT+GGG + chr5_4:8588651-8588670 Msa0835280:intron 40.0%
TAAAGTTATGGGATCTTGGG+GGG + chr5_4:8588712-8588731 Msa0835280:CDS 40.0%
TGTGTGTGTGTGTTTCACAT+AGG + chr5_4:8588849-8588868 Msa0835280:intron 40.0%
! TGTGTTTCACATAGGAGCAT+TGG + chr5_4:8588857-8588876 Msa0835280:intron 40.0%
ACAAAGACAACGCTCAAAGA+AGG - chr5_4:8589307-8589326 None:intergenic 40.0%
! TCTTTGAGCGTTGTCTTTGT+CGG + chr5_4:8589307-8589326 Msa0835280:intron 40.0%
GAAGCTATATACTCACTCCT+TGG - chr5_4:8589333-8589352 None:intergenic 40.0%
AAAGGGATACCACTCAATGA+TGG - chr5_4:8589752-8589771 None:intergenic 40.0%
TGGTATCCCTTTATTGGTGT+TGG + chr5_4:8589760-8589779 Msa0835280:CDS 40.0%
! GGTATCCCTTTATTGGTGTT+GGG + chr5_4:8589761-8589780 Msa0835280:CDS 40.0%
GTTGGGAAACAAGATTGACA+AGG + chr5_4:8589778-8589797 Msa0835280:CDS 40.0%
GAAACAAGATTGACAAGGCA+GGG + chr5_4:8589783-8589802 Msa0835280:CDS 40.0%
AAACAAGATTGACAAGGCAG+GGG + chr5_4:8589784-8589803 Msa0835280:CDS 40.0%
ACGCGTATCTTACATTTGGT+CGG - chr5_4:8589831-8589850 None:intergenic 40.0%
CTGGCTGTTAAGAGCAATAA+CGG + chr5_4:8589861-8589880 Msa0835280:intron 40.0%
!! TAACGGATTAAAGTGGTCCT+AGG + chr5_4:8589878-8589897 Msa0835280:intron 40.0%
GTCAATAACAGAGTCGATGT+TGG - chr5_4:8590063-8590082 None:intergenic 40.0%
!! ACATCGACTCTGTTATTGAC+TGG + chr5_4:8590063-8590082 Msa0835280:CDS 40.0%
! ATTTTGTGGGGACTCAATTC+TGG + chr5_4:8590145-8590164 Msa0835280:three_prime_UTR 40.0%
!! TGCATGTCTAACTCTGAGAT+TGG + chr5_4:8590184-8590203 Msa0835280:three_prime_UTR 40.0%
TTTATCCTTTCCCTTTCCTC+AGG + chr5_4:8590207-8590226 Msa0835280:three_prime_UTR 40.0%
TTACTAAGCACCTGAGGAAA+GGG - chr5_4:8590220-8590239 None:intergenic 40.0%
ATTACTAAGCACCTGAGGAA+AGG - chr5_4:8590221-8590240 None:intergenic 40.0%
GCTGGTCATTTGAAAGAAAC+AGG - chr5_4:8590403-8590422 None:intergenic 40.0%
TTCAAATGACCAGCAATGTG+TGG + chr5_4:8590409-8590428 Msa0835280:three_prime_UTR 40.0%
! AATTTAAGGCCACACATTGC+TGG - chr5_4:8590421-8590440 None:intergenic 40.0%
CGATAATAGAGTGCAAAGCG+AGG + chr5_4:8584713-8584732 Msa0835280:five_prime_UTR 45.0%
! TGTGGGAAGCTTTTCTGAAC+TGG + chr5_4:8584902-8584921 Msa0835280:CDS 45.0%
! CTTTTCTGAACTGGTTACGC+AGG + chr5_4:8584911-8584930 Msa0835280:CDS 45.0%
TCGACGTATTAGGGTGAGTT+TGG + chr5_4:8585114-8585133 Msa0835280:intron 45.0%
CGACGTATTAGGGTGAGTTT+GGG + chr5_4:8585115-8585134 Msa0835280:intron 45.0%
! TTTATCCCTAAGGGTGCACT+TGG - chr5_4:8585359-8585378 None:intergenic 45.0%
TTAGCACAGGGCATGCATAT+AGG - chr5_4:8585501-8585520 None:intergenic 45.0%
GAAAGTGATCCACTTAGCAC+AGG - chr5_4:8585514-8585533 None:intergenic 45.0%
! TTGCAGCCTTTTCTTCAAGC+AGG + chr5_4:8585575-8585594 Msa0835280:intron 45.0%
CCATCTCCTGCTTGAAGAAA+AGG - chr5_4:8585584-8585603 None:intergenic 45.0%
! CCTTTTCTTCAAGCAGGAGA+TGG + chr5_4:8585581-8585600 Msa0835280:CDS 45.0%
CTTATAGGGCTTCAGAATGC+TGG + chr5_4:8585612-8585631 Msa0835280:CDS 45.0%
TAGCAAATGGGGCAGTAGTA+AGG + chr5_4:8585864-8585883 Msa0835280:intron 45.0%
AAATGGGGCAGTAGTAAGGA+GGG + chr5_4:8585868-8585887 Msa0835280:intron 45.0%
GTAAGGAGGGAAGGATTTGA+AGG + chr5_4:8585881-8585900 Msa0835280:intron 45.0%
!! AGGGTACAGTTCTAAGTGAC+AGG + chr5_4:8586026-8586045 Msa0835280:intron 45.0%
AGGAATCAGGGAGGACAAAA+AGG + chr5_4:8586070-8586089 Msa0835280:intron 45.0%
GGAATCAGGGAGGACAAAAA+GGG + chr5_4:8586071-8586090 Msa0835280:intron 45.0%
AACGTTCCTGCTGTGTAACA+AGG + chr5_4:8586116-8586135 Msa0835280:intron 45.0%
ACGTTCCTGCTGTGTAACAA+GGG + chr5_4:8586117-8586136 Msa0835280:intron 45.0%
GATTTCCCTTGTTACACAGC+AGG - chr5_4:8586125-8586144 None:intergenic 45.0%
ACCACTAATTGTGAAGCCGA+GGG - chr5_4:8586241-8586260 None:intergenic 45.0%
AACCACTAATTGTGAAGCCG+AGG - chr5_4:8586242-8586261 None:intergenic 45.0%
! TTTTCCTGAGCTGAAGACAC+TGG + chr5_4:8586265-8586284 Msa0835280:intron 45.0%
TTATCCAGTGTCTTCAGCTC+AGG - chr5_4:8586272-8586291 None:intergenic 45.0%
GCTGAAGACACTGGATAACA+TGG + chr5_4:8586274-8586293 Msa0835280:intron 45.0%
GAAGACACTGGATAACATGG+AGG + chr5_4:8586277-8586296 Msa0835280:intron 45.0%
TGATGGAGTATGACGACCAA+CGG + chr5_4:8586392-8586411 Msa0835280:intron 45.0%
GCAGCTTATGGCACATTAGA+AGG + chr5_4:8586432-8586451 Msa0835280:intron 45.0%
GAAACCATCGGCAACTCTTA+AGG + chr5_4:8586487-8586506 Msa0835280:intron 45.0%
! GATGGATCAATTGCCACTTG+AGG + chr5_4:8586509-8586528 Msa0835280:intron 45.0%
! TCAATTGCCACTTGAGGACA+AGG + chr5_4:8586515-8586534 Msa0835280:intron 45.0%
! GCAATGGTGAAGCTAGGTTT+TGG + chr5_4:8586582-8586601 Msa0835280:intron 45.0%
ATTGGTTGACTGAGGAGTTC+AGG + chr5_4:8586714-8586733 Msa0835280:intron 45.0%
AACTCTGGATGACTTCCAGA+AGG + chr5_4:8586756-8586775 Msa0835280:intron 45.0%
TAGGGGAACTTGCACTACAA+GGG + chr5_4:8586811-8586830 Msa0835280:intron 45.0%
TTTGGGAATCCAAGCACAAG+AGG - chr5_4:8586854-8586873 None:intergenic 45.0%
CTACAAATGGTTGGCACATC+TGG + chr5_4:8586905-8586924 Msa0835280:intron 45.0%
ATACCATACTGGTGGTTGAC+TGG + chr5_4:8587105-8587124 Msa0835280:intron 45.0%
! GTGGTTGACTGGTTGTTTAC+AGG + chr5_4:8587116-8587135 Msa0835280:intron 45.0%
AGCAGGTTGTACACCATTCA+AGG + chr5_4:8587465-8587484 Msa0835280:intron 45.0%
AGGTTGTACACCATTCAAGG+TGG + chr5_4:8587468-8587487 Msa0835280:intron 45.0%
ATGCAACCACAAACTTCTGC+AGG - chr5_4:8587510-8587529 None:intergenic 45.0%
TGGTGAATTTGATGCTGCTC+AGG - chr5_4:8587780-8587799 None:intergenic 45.0%
AGGTGCATACAAGAAGGTAG+AGG + chr5_4:8588061-8588080 Msa0835280:intron 45.0%
TACAAGAAGGTAGAGGTTGC+TGG + chr5_4:8588068-8588087 Msa0835280:intron 45.0%
! CAATCACGGACTGCAGAAAA+TGG - chr5_4:8588282-8588301 None:intergenic 45.0%
TGCAGGTGGGATTCAATATG+AGG + chr5_4:8588664-8588683 Msa0835280:intron 45.0%
AGTAACGTTCCCACATGCTA+CGG - chr5_4:8588749-8588768 None:intergenic 45.0%
TATTGCCTAGCAATCGACTG+AGG + chr5_4:8588995-8589014 Msa0835280:intron 45.0%
TGAAAATTGGGATGCTGCCA+AGG + chr5_4:8589507-8589526 Msa0835280:intron 45.0%
TCTAAGAGGCAGAGAATCCT+TGG - chr5_4:8589527-8589546 None:intergenic 45.0%
GGAAACAAGATTGACAAGGC+AGG + chr5_4:8589782-8589801 Msa0835280:CDS 45.0%
AGGGACGCGTATCTTACATT+TGG - chr5_4:8589835-8589854 None:intergenic 45.0%
! GATACGCGTCCCTTTTATTC+TGG + chr5_4:8589842-8589861 Msa0835280:intron 45.0%
!! GTTTGGTTCTAAGTGCTCTC+TGG + chr5_4:8589967-8589986 Msa0835280:intron 45.0%
CAAAGCGAGGGAAGAAGGAT+AGG + chr5_4:8584726-8584745 Msa0835280:five_prime_UTR 50.0%
CTCTTCCAAGTGCACCCTTA+GGG + chr5_4:8585351-8585370 Msa0835280:intron 50.0%
TATGCATGCCCTGTGCTAAG+TGG + chr5_4:8585502-8585521 Msa0835280:intron 50.0%
CAAATGGGGCAGTAGTAAGG+AGG + chr5_4:8585867-8585886 Msa0835280:intron 50.0%
CAAGGGAAATCTCCCTCAGT+TGG + chr5_4:8586134-8586153 Msa0835280:intron 50.0%
TCCCTCGGCTTCACAATTAG+TGG + chr5_4:8586237-8586256 Msa0835280:intron 50.0%
GAAAGTAGTCAGTGTCGCAG+AGG + chr5_4:8586328-8586347 Msa0835280:intron 50.0%
GGTGGCTAACAGCATAACAC+CGG + chr5_4:8586349-8586368 Msa0835280:intron 50.0%
CCATCCTTAAGAGTTGCCGA+TGG - chr5_4:8586494-8586513 None:intergenic 50.0%
CCATCGGCAACTCTTAAGGA+TGG + chr5_4:8586491-8586510 Msa0835280:intron 50.0%
! TTGCCACTTGAGGACAAGGA+TGG + chr5_4:8586519-8586538 Msa0835280:intron 50.0%
TTGAGGACAAGGATGGCAGA+TGG + chr5_4:8586526-8586545 Msa0835280:intron 50.0%
AATGGTCAGGGATCTCTGAG+CGG + chr5_4:8586560-8586579 Msa0835280:intron 50.0%
GGAATTGCTCCCCTCTAACA+AGG + chr5_4:8586615-8586634 Msa0835280:intron 50.0%
ATTGCTCCCCTCTAACAAGG+TGG + chr5_4:8586618-8586637 Msa0835280:intron 50.0%
GTAGGGGAACTTGCACTACA+AGG + chr5_4:8586810-8586829 Msa0835280:intron 50.0%
GGAACTTGCACTACAAGGGT+AGG + chr5_4:8586815-8586834 Msa0835280:intron 50.0%
CTTGCACTACAAGGGTAGGA+TGG + chr5_4:8586819-8586838 Msa0835280:intron 50.0%
TGCTAACAGCCTCTTGTGCT+TGG + chr5_4:8586842-8586861 Msa0835280:intron 50.0%
CACATCTGGTGCAGTGGTTA+GGG + chr5_4:8586919-8586938 Msa0835280:intron 50.0%
ACATCTGGTGCAGTGGTTAG+GGG + chr5_4:8586920-8586939 Msa0835280:intron 50.0%
CAACCAGTCAACCACCAGTA+TGG - chr5_4:8587111-8587130 None:intergenic 50.0%
GAGCATGAGCAAATTCTGGC+AGG + chr5_4:8587273-8587292 Msa0835280:intron 50.0%
!! CTGCATTGACTCTGATGAGC+AGG + chr5_4:8587321-8587340 Msa0835280:intron 50.0%
! ATTGACTCTGATGAGCAGGC+AGG + chr5_4:8587325-8587344 Msa0835280:intron 50.0%
ACAGACACTCTGCCCAAGTA+AGG - chr5_4:8587423-8587442 None:intergenic 50.0%
! ACCAATTTTCACGGGACAGC+AGG + chr5_4:8587448-8587467 Msa0835280:intron 50.0%
ACCTGCTGTCCCGTGAAAAT+TGG - chr5_4:8587452-8587471 None:intergenic 50.0%
TGCACACCTGCAGAAGTTTG+TGG + chr5_4:8587501-8587520 Msa0835280:intron 50.0%
TGCTAGCAGGTTTCGTATGC+TGG - chr5_4:8587618-8587637 None:intergenic 50.0%
TGGCTTTCTTGGATGCTAGC+AGG - chr5_4:8587631-8587650 None:intergenic 50.0%
CAAGGGATAGGACATACGAG+TGG + chr5_4:8587667-8587686 Msa0835280:intron 50.0%
CACCACATTCTGCACTGCAT+TGG + chr5_4:8587880-8587899 Msa0835280:intron 50.0%
AGCCAATGCAGTGCAGAATG+TGG - chr5_4:8587885-8587904 None:intergenic 50.0%
!! CAGAAGGGGGAAGGTTTTGA+AGG + chr5_4:8588041-8588060 Msa0835280:intron 50.0%
AGAAGGTAGAGGTTGCTGGA+AGG + chr5_4:8588072-8588091 Msa0835280:intron 50.0%
! TCACGGACTGCAGAAAATGG+TGG - chr5_4:8588279-8588298 None:intergenic 50.0%
AACCTAGGTTCCGTAGCATG+TGG + chr5_4:8588736-8588755 Msa0835280:CDS 50.0%
ACCTAGGTTCCGTAGCATGT+GGG + chr5_4:8588737-8588756 Msa0835280:CDS 50.0%
GGAAAGGCTCTTTACTCAGC+AGG - chr5_4:8589201-8589220 None:intergenic 50.0%
GCTGAGTAAAGAGCCTTTCC+TGG + chr5_4:8589201-8589220 Msa0835280:intron 50.0%
CTGAGCAAGCCATCATTGAG+TGG + chr5_4:8589740-8589759 Msa0835280:CDS 50.0%
!! TGGTTCTAAGTGCTCTCTGG+TGG + chr5_4:8589970-8589989 Msa0835280:intron 50.0%
AAGCACCTGAGGAAAGGGAA+AGG - chr5_4:8590215-8590234 None:intergenic 50.0%
GAGTGCAAAGCGAGGGAAGA+AGG + chr5_4:8584721-8584740 Msa0835280:five_prime_UTR 55.0%
GCGAGGGAAGAAGGATAGGA+AGG + chr5_4:8584730-8584749 Msa0835280:five_prime_UTR 55.0%
GCTCTTCCAAGTGCACCCTT+AGG + chr5_4:8585350-8585369 Msa0835280:intron 55.0%
TTAGACCGGTGGATACAGCG+AGG + chr5_4:8585753-8585772 Msa0835280:intron 55.0%
CATGTCCTCGCTGTATCCAC+CGG - chr5_4:8585761-8585780 None:intergenic 55.0%
AGTAGTCAGTGTCGCAGAGG+TGG + chr5_4:8586331-8586350 Msa0835280:intron 55.0%
CTGCCATCCTTGTCCTCAAG+TGG - chr5_4:8586525-8586544 None:intergenic 55.0%
AGGACAAGGATGGCAGATGG+AGG + chr5_4:8586529-8586548 Msa0835280:intron 55.0%
GGACAAGGATGGCAGATGGA+GGG + chr5_4:8586530-8586549 Msa0835280:intron 55.0%
GACAAGGATGGCAGATGGAG+GGG + chr5_4:8586531-8586550 Msa0835280:intron 55.0%
GATGGCAGATGGAGGGGAAT+GGG + chr5_4:8586537-8586556 Msa0835280:intron 55.0%
CAGATGGAGGGGAATGGGAA+TGG + chr5_4:8586542-8586561 Msa0835280:intron 55.0%
GAGGGGAATGGGAATGGTCA+GGG + chr5_4:8586548-8586567 Msa0835280:intron 55.0%
TGAGCGGCAATGGTGAAGCT+AGG + chr5_4:8586576-8586595 Msa0835280:intron 55.0%
GCACATCTGGTGCAGTGGTT+AGG + chr5_4:8586918-8586937 Msa0835280:intron 55.0%
GTGCAGTGGTTAGGGGTGAA+AGG + chr5_4:8586927-8586946 Msa0835280:intron 55.0%
GGAAGAGGTAGCAAGCTTGC+AGG - chr5_4:8587017-8587036 None:intergenic 55.0%
GCAGGTTTCGTATGCTGGTC+TGG - chr5_4:8587613-8587632 None:intergenic 55.0%
GGATAGGACATACGAGTGGC+AGG + chr5_4:8587671-8587690 Msa0835280:intron 55.0%
ATAACACTGCTCCCACCTCC+TGG - chr5_4:8587840-8587859 None:intergenic 55.0%
TCCCACATGCTACGGAACCT+AGG - chr5_4:8588741-8588760 None:intergenic 55.0%
GTGGGAACGTTACTGTCGTG+CGG + chr5_4:8588755-8588774 Msa0835280:CDS 55.0%
TGCCTAGCAATCGACTGAGG+TGG + chr5_4:8588998-8589017 Msa0835280:intron 55.0%
CACCACCTCAGTCGATTGCT+AGG - chr5_4:8589003-8589022 None:intergenic 55.0%
AGCGTTGTCTTTGTCGGCCA+AGG + chr5_4:8589313-8589332 Msa0835280:intron 55.0%
! TAAGTGCTCTCTGGTGGTGC+AGG + chr5_4:8589976-8589995 Msa0835280:intron 55.0%
! AAGTGCTCTCTGGTGGTGCA+GGG + chr5_4:8589977-8589996 Msa0835280:intron 55.0%
GGGGCAGTAGTAAGGAGGGA+AGG + chr5_4:8585872-8585891 Msa0835280:intron 60.0%
GGATGGCAGATGGAGGGGAA+TGG + chr5_4:8586536-8586555 Msa0835280:intron 60.0%
GGAGGGGAATGGGAATGGTC+AGG + chr5_4:8586547-8586566 Msa0835280:intron 60.0%
CAGGGATCTCTGAGCGGCAA+TGG + chr5_4:8586566-8586585 Msa0835280:intron 60.0%
GGTTGGCACATCTGGTGCAG+TGG + chr5_4:8586913-8586932 Msa0835280:intron 60.0%
AGGCAGTGGCAGCAGTCAGA+AGG + chr5_4:8588025-8588044 Msa0835280:intron 60.0%
GGCAGTGGCAGCAGTCAGAA+GGG + chr5_4:8588026-8588045 Msa0835280:intron 60.0%
GCAGTGGCAGCAGTCAGAAG+GGG + chr5_4:8588027-8588046 Msa0835280:intron 60.0%
CAGTGGCAGCAGTCAGAAGG+GGG + chr5_4:8588028-8588047 Msa0835280:intron 60.0%
! GAGGTAGGTCTTGGGGCACC+AGG + chr5_4:8587819-8587838 Msa0835280:intron 65.0%
! GTAGGTCTTGGGGCACCAGG+AGG + chr5_4:8587822-8587841 Msa0835280:intron 65.0%
! GTCTTGGGGCACCAGGAGGT+GGG + chr5_4:8587826-8587845 Msa0835280:intron 65.0%
GGCAGCAGTCAGAAGGGGGA+AGG + chr5_4:8588032-8588051 Msa0835280:intron 65.0%
GGGATCTTGGGGGGCAACCT+AGG + chr5_4:8588721-8588740 Msa0835280:CDS 65.0%
! GGTCTTGGGGCACCAGGAGG+TGG + chr5_4:8587825-8587844 Msa0835280:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8584686 8590446 8584686 ID=Msa0835280;Name=Msa0835280
chr5_4 mRNA 8584686 8590446 8584686 ID=Msa0835280-mRNA-1;Parent=Msa0835280;Name=Msa0835280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=209|1|1|1|0.8|1|6|331|184
chr5_4 exon 8584686 8584932 8584686 ID=Msa0835280-mRNA-1:exon:3804;Parent=Msa0835280-mRNA-1
chr5_4 exon 8585581 8585662 8585581 ID=Msa0835280-mRNA-1:exon:3805;Parent=Msa0835280-mRNA-1
chr5_4 exon 8585757 8585789 8585757 ID=Msa0835280-mRNA-1:exon:3806;Parent=Msa0835280-mRNA-1
chr5_4 exon 8588669 8588790 8588669 ID=Msa0835280-mRNA-1:exon:3807;Parent=Msa0835280-mRNA-1
chr5_4 exon 8589676 8589837 8589676 ID=Msa0835280-mRNA-1:exon:3808;Parent=Msa0835280-mRNA-1
chr5_4 exon 8589998 8590446 8589998 ID=Msa0835280-mRNA-1:exon:3809;Parent=Msa0835280-mRNA-1
chr5_4 five_prime_UTR 8584686 8584894 8584686 ID=Msa0835280-mRNA-1:five_prime_utr;Parent=Msa0835280-mRNA-1
chr5_4 CDS 8584895 8584932 8584895 ID=Msa0835280-mRNA-1:cds;Parent=Msa0835280-mRNA-1
chr5_4 CDS 8585581 8585662 8585581 ID=Msa0835280-mRNA-1:cds;Parent=Msa0835280-mRNA-1
chr5_4 CDS 8585757 8585789 8585757 ID=Msa0835280-mRNA-1:cds;Parent=Msa0835280-mRNA-1
chr5_4 CDS 8588669 8588790 8588669 ID=Msa0835280-mRNA-1:cds;Parent=Msa0835280-mRNA-1
chr5_4 CDS 8589676 8589837 8589676 ID=Msa0835280-mRNA-1:cds;Parent=Msa0835280-mRNA-1
chr5_4 CDS 8589998 8590115 8589998 ID=Msa0835280-mRNA-1:cds;Parent=Msa0835280-mRNA-1
chr5_4 three_prime_UTR 8590116 8590446 8590116 ID=Msa0835280-mRNA-1:three_prime_utr;Parent=Msa0835280-mRNA-1
Gene Sequence

>Msa0835280

ATGGGATTGTGGGAAGCTTTTCTGAACTGGTTACGCAGCCTTTTCTTCAAGCAGGAGATGGAGTTATCTCTTATAGGGCTTCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACCGGTGGATACAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATAAAGTTATGGGATCTTGGGGGGCAACCTAGGTTCCGTAGCATGTGGGAACGTTACTGTCGTGCGGTTTCCGCTATTGTTTATGTTGTTGATGCTGCTGATCCAGATAATCTTAGCATATCAAGAAGCGAACTTCATGATTTGCTGAGCAAGCCATCATTGAGTGGTATCCCTTTATTGGTGTTGGGAAACAAGATTGACAAGGCAGGGGCTCTGTCTAAACAAGCTTTGACCGACCAAATGGATCTGAAATCAATTACTGATAGAGAAGTTTGTTGCTTCATGATCTCGTGCAAAAACTCAACCAACATCGACTCTGTTATTGACTGGCTTGTGAAGCATTCCAAATCAAAGAGCTAA
Protein sequence

>Msa0835280

MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*