AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149390 MtrunA17_Chr1g0147041 99.399 333 2 0 1 333 1 333 0.0 699
Msa0149390 MtrunA17_Chr3g0126851 90.390 333 23 2 1 333 1 324 0.0 606
Msa0149390 MtrunA17_Chr8g0346801 79.456 331 46 3 3 333 1 309 0.0 543
Msa0149390 MtrunA17_Chr7g0275701 78.361 305 50 4 30 333 34 323 8.40e-180 500
Msa0149390 MtrunA17_Chr3g0083571 83.333 258 43 0 62 319 47 304 2.98e-168 470
Msa0149390 MtrunA17_Chr8g0352701 76.208 269 60 1 55 319 36 304 4.14e-161 452
Msa0149390 MtrunA17_Chr7g0258941 75.281 267 66 0 52 318 43 309 4.20e-155 437
Msa0149390 MtrunA17_Chr1g0175721 70.103 291 80 1 36 319 19 309 2.60e-154 435
Msa0149390 MtrunA17_Chr4g0051351 26.695 236 158 7 45 279 76 297 5.70e-20 89.0
Msa0149390 MtrunA17_Chr5g0433631 31.928 166 107 3 69 234 34 193 1.28e-19 88.2
Msa0149390 MtrunA17_Chr7g0223111 27.273 220 149 5 58 276 26 235 2.40e-19 87.4
Msa0149390 MtrunA17_Chr5g0428191 33.094 139 91 2 68 205 11 148 8.63e-18 82.8
Msa0149390 MtrunA17_Chr5g0433541 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0149390 MtrunA17_Chr5g0433551 32.948 173 100 5 67 234 10 171 1.75e-16 77.8
Msa0149390 MtrunA17_Chr5g0433411 25.670 261 177 7 52 311 17 261 3.17e-16 78.6
Msa0149390 MtrunA17_Chr5g0433661 31.544 149 97 2 48 193 25 171 4.80e-16 78.2
Msa0149390 MtrunA17_Chr5g0424971 29.861 144 95 4 58 200 8 146 1.39e-15 76.6
Msa0149390 MtrunA17_Chr1g0169381 35.345 116 72 2 68 183 11 123 3.60e-15 72.0
Msa0149390 MtrunA17_Chr5g0433531 32.768 177 103 5 63 234 6 171 4.86e-15 74.7
Msa0149390 MtrunA17_Chr2g0298951 33.628 113 70 2 84 193 9 119 3.56e-14 72.0
Msa0149390 MtrunA17_Chr7g0259431 37.000 100 61 1 84 183 9 106 2.44e-13 69.7
Msa0149390 MtrunA17_Chr5g0433521 30.128 156 93 5 84 234 23 167 4.47e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149390 AT3G61790.1 81.081 333 53 2 1 331 1 325 0.0 554
Msa0149390 AT4G27880.1 78.932 337 56 4 1 333 1 326 0.0 543
Msa0149390 AT3G58040.1 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0149390 AT3G58040.3 72.258 310 71 2 10 319 14 308 2.54e-164 460
Msa0149390 AT2G41980.1 76.259 278 61 1 42 319 33 305 2.57e-160 450
Msa0149390 AT5G53360.1 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0149390 AT5G53360.3 89.908 218 22 0 116 333 15 232 7.77e-152 426
Msa0149390 AT3G58040.2 63.889 216 60 3 10 222 14 214 1.98e-90 270
Msa0149390 AT5G53360.2 89.167 120 13 0 214 333 60 179 1.60e-78 238
Msa0149390 AT5G53360.2 57.692 52 14 1 33 84 16 59 2.08e-11 62.4
Msa0149390 AT3G13672.1 58.333 168 67 1 155 319 45 212 2.95e-71 221
Msa0149390 AT3G13672.2 50.769 195 66 2 155 319 45 239 1.16e-65 207
Msa0149390 AT5G37870.1 39.062 128 75 2 67 194 41 165 5.75e-25 102
Msa0149390 AT5G37930.1 34.595 185 111 3 11 187 45 227 1.49e-24 102
Msa0149390 AT5G37890.1 27.935 247 163 6 67 311 47 280 2.99e-22 95.1
Msa0149390 AT5G62800.1 26.667 255 159 7 67 311 39 275 6.98e-21 92.4
Msa0149390 AT5G62800.2 27.103 214 132 5 67 270 39 238 1.35e-20 90.9
Msa0149390 AT1G66660.2 40.179 112 65 1 67 178 102 211 3.68e-20 90.1
Msa0149390 AT1G66650.1 38.655 119 70 2 68 185 83 199 5.23e-20 89.7
Msa0149390 AT1G66620.1 35.878 131 80 2 55 183 26 154 5.80e-20 89.4
Msa0149390 AT1G66630.1 35.915 142 85 3 49 186 25 164 4.10e-19 86.7
Msa0149390 AT5G37910.1 35.537 121 76 1 67 187 34 152 5.04e-19 85.9
Msa0149390 AT1G66610.2 35.165 91 56 1 40 130 133 220 1.50e-13 69.7
Msa0149390 AT1G66610.2 40.299 67 40 0 67 133 52 118 2.39e-11 63.2
Msa0149390 AT1G66610.1 42.857 63 36 0 67 129 52 114 1.47e-11 65.1

Find 101 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAGTATGGAAAGATTTC+TGG 0.159871 1_4:-10151947 None:intergenic
AACAATAATCATGGTGTTAT+TGG 0.169856 1_4:+10148863 Msa0149390:CDS
TGATAGGTATTTCATTGTTT+TGG 0.211856 1_4:+10152515 Msa0149390:intron
CCTCATAATTCAACGAAATA+TGG 0.309243 1_4:+10152745 Msa0149390:CDS
GTTGTGTAATAAACAAGATT+TGG 0.313626 1_4:+10153004 Msa0149390:three_prime_UTR
TGCTTCAGCTTGCTGTAGTA+TGG 0.315397 1_4:-10151959 None:intergenic
TAAGAGTCACAGGAAGAATA+TGG 0.339068 1_4:+10152807 Msa0149390:CDS
CGAAGGAATGCCATGTAAAC+TGG 0.349784 1_4:-10152584 None:intergenic
CATGGCATTCCTTCGTTTCA+TGG 0.350645 1_4:+10152592 Msa0149390:CDS
TCTCTCTCTTACCTAGTTTG+AGG 0.354784 1_4:-10148365 None:intergenic
AGCCTCGAGGTTGGGGCAAA+TGG 0.361379 1_4:+10152647 Msa0149390:CDS
ATAAAGCAAACCTGATGAAT+TGG 0.365377 1_4:-10148962 None:intergenic
CAAATGGAAGAAAACTCATT+TGG 0.371206 1_4:+10152663 Msa0149390:CDS
ACACATCAGCTGCAAAGATT+TGG 0.392931 1_4:-10152866 None:intergenic
ATACCTACAGCCTCGAGGTT+GGG 0.402306 1_4:+10152639 Msa0149390:CDS
GAAGATGAAGATTGTAATCA+TGG 0.408797 1_4:-10148474 None:intergenic
GGTTGTATTGTGAGAGAGAA+AGG 0.410368 1_4:-10148344 None:intergenic
TAATAAACAAGATTTGGAAC+TGG 0.421003 1_4:+10153010 Msa0149390:three_prime_UTR
AATGTATCCTCCAATTCATC+AGG 0.424313 1_4:+10148952 Msa0149390:CDS
CCATATTTCGTTGAATTATG+AGG 0.425488 1_4:-10152745 None:intergenic
TAGGTGTCTGGCACTGGAAA+AGG 0.426106 1_4:+10151877 Msa0149390:CDS
TACATTGAATTGGTACAAAC+AGG 0.426249 1_4:-10148935 None:intergenic
CCATGCAAATACTACTCTCT+TGG 0.426909 1_4:+10151920 Msa0149390:CDS
TGTTTCTTCTTCTGATGGAA+TGG 0.427322 1_4:+10148745 Msa0149390:CDS
AGATATTAGGTGTCTGGCAC+TGG 0.427576 1_4:+10151871 Msa0149390:CDS
GGTATACAAACCCCACCATC+TGG 0.433787 1_4:-10152845 None:intergenic
GACAAGAGCTTGGAGATATT+AGG 0.446367 1_4:+10151858 Msa0149390:CDS
AATTGGAGGATACATTGAAT+TGG 0.448728 1_4:-10148945 None:intergenic
TTTCCTCGTTGCACATTTGA+GGG 0.453343 1_4:+10152057 Msa0149390:CDS
ATTTCCTCGTTGCACATTTG+AGG 0.454644 1_4:+10152056 Msa0149390:CDS
GAGTGTGTTTCTTCTTCTGA+TGG 0.455471 1_4:+10148740 Msa0149390:CDS
CAAAGTGAAGGCAGAAGTAT+TGG 0.460533 1_4:-10152538 None:intergenic
ACATTTGAGGGACGATCATA+AGG 0.461663 1_4:+10152069 Msa0149390:CDS
ATCTCCAAGCTCTTGTCTAC+AGG 0.469456 1_4:-10151852 None:intergenic
AAATGGAAGAAAACTCATTT+GGG 0.470132 1_4:+10152664 Msa0149390:CDS
CACTTTGAAGCTTTCCAGCT+AGG 0.473624 1_4:+10152554 Msa0149390:CDS
AAACTGGAGCCATGCCTAGC+TGG 0.474045 1_4:-10152568 None:intergenic
GCTTGGAGATATTAGGTGTC+TGG 0.474212 1_4:+10151865 Msa0149390:CDS
AAAATTGAAGAGAGAGGAAG+CGG 0.484028 1_4:+10148564 Msa0149390:five_prime_UTR
AAATTTCAAAGCCATCATCT+TGG 0.487024 1_4:-10152967 None:intergenic
ATGGCATTCCTTCGTTTCAT+GGG 0.491316 1_4:+10152593 Msa0149390:CDS
TACAAGTGTTCATGAGTTGT+TGG 0.494508 1_4:+10148907 Msa0149390:CDS
CCAGCATAGGGACAAGTGTA+TGG 0.509082 1_4:-10152004 None:intergenic
AAGAAGAAAATTGAAGAGAG+AGG 0.513631 1_4:+10148558 Msa0149390:five_prime_UTR
TCTTCATTGAAACCTCGTAA+TGG 0.515536 1_4:+10148836 Msa0149390:CDS
TCACAATACAACCTCAAACT+AGG 0.516991 1_4:+10148354 Msa0149390:five_prime_UTR
CCATACACTTGTCCCTATGC+TGG 0.517993 1_4:+10152004 Msa0149390:CDS
AATGGAGGAAACAATAATCA+TGG 0.519050 1_4:+10148854 Msa0149390:CDS
TACCTACAGCCTCGAGGTTG+GGG 0.519942 1_4:+10152640 Msa0149390:CDS
CAGTTCCTTCCTATCACCAC+CGG 0.520559 1_4:-10152780 None:intergenic
TAAAGATTAATAAAATTGAA+AGG 0.526678 1_4:-10148256 None:intergenic
GAACTGAAATTAAGAGTCAC+AGG 0.528820 1_4:+10152797 Msa0149390:CDS
AAGAAAATGAAAATAAGAGA+AGG 0.532624 1_4:-10148496 None:intergenic
AAGCAAACCTGATGAATTGG+AGG 0.534378 1_4:-10148959 None:intergenic
AGGCATGGCTCCAGTTTACA+TGG 0.535252 1_4:+10152574 Msa0149390:CDS
AGAGTAAGACACCAAGATGA+TGG 0.543839 1_4:+10152956 Msa0149390:three_prime_UTR
TGATGATGTTGTTGATGATG+TGG 0.544739 1_4:-10148800 None:intergenic
TGAAGCTTTCCAGCTAGGCA+TGG 0.545484 1_4:+10152559 Msa0149390:CDS
TTTCTCCGGTGGTGATAGGA+AGG 0.551436 1_4:+10152775 Msa0149390:CDS
AACAACAGAATCCAGATGGT+GGG 0.552181 1_4:+10152834 Msa0149390:CDS
AATAAACAAGATTTGGAACT+GGG 0.555763 1_4:+10153011 Msa0149390:three_prime_UTR
GAGAAAGGAACAAGAACCGT+TGG 0.556027 1_4:-10148329 None:intergenic
TATACCTACAGCCTCGAGGT+TGG 0.558753 1_4:+10152638 Msa0149390:CDS
TATTACAACACACACAAAGT+TGG 0.560344 1_4:-10152934 None:intergenic
AACTCATGAACACTTGTAGC+AGG 0.562232 1_4:-10148902 None:intergenic
GGATCAGAGTGCTCTGCTGT+TGG 0.562708 1_4:+10152025 Msa0149390:CDS
CCGACCTGTAGACAAGAGCT+TGG 0.568050 1_4:+10151848 Msa0149390:CDS
GTGAAGTAGAGAATGCTACT+TGG 0.568738 1_4:+10152146 Msa0149390:CDS
TGGGAGACGAGAACGAGGCT+CGG 0.575368 1_4:+10152612 Msa0149390:CDS
AGAGCACTCTGATCCAGCAT+AGG 0.582116 1_4:-10152017 None:intergenic
TTCCATTTGCCCCAACCTCG+AGG 0.594074 1_4:-10152649 None:intergenic
GAGCACTCTGATCCAGCATA+GGG 0.594763 1_4:-10152016 None:intergenic
AAGATGAAGATTGTAATCAT+GGG 0.595284 1_4:-10148473 None:intergenic
GTGGATGAAGAATACGATGT+TGG 0.600992 1_4:-10148781 None:intergenic
CCAAGAGAGTAGTATTTGCA+TGG 0.602573 1_4:-10151920 None:intergenic
TGGAAGAAAACTCATTTGGG+AGG 0.602668 1_4:+10152667 Msa0149390:CDS
TCATTGAAACCTCGTAATGG+AGG 0.608179 1_4:+10148839 Msa0149390:CDS
GAACAACAGAATCCAGATGG+TGG 0.613047 1_4:+10152833 Msa0149390:CDS
GCTGGAAAGCTTCAAAGTGA+AGG 0.613710 1_4:-10152550 None:intergenic
ACAACAGAATCCAGATGGTG+GGG 0.614888 1_4:+10152835 Msa0149390:CDS
GGAAGAAAACTCATTTGGGA+GGG 0.623722 1_4:+10152668 Msa0149390:CDS
CATAAGGTGGACATGCACAC+AGG 0.632218 1_4:+10152085 Msa0149390:CDS
AATAAATCATCATAATCCAA+CGG 0.635358 1_4:+10148313 Msa0149390:five_prime_UTR
TTTCATGGGAGACGAGAACG+AGG 0.636980 1_4:+10152607 Msa0149390:CDS
GATTTGACTTCACATAACGA+TGG 0.637615 1_4:-10152120 None:intergenic
TGTGTTCCACATGTAAAACA+AGG 0.639674 1_4:+10151810 Msa0149390:CDS
TGCCCCAACCTCGAGGCTGT+AGG 0.640496 1_4:-10152642 None:intergenic
AAAGAACAACAGAATCCAGA+TGG 0.642877 1_4:+10152830 Msa0149390:CDS
TTATTGTTTCCTCCATTACG+AGG 0.648247 1_4:-10148848 None:intergenic
AAAGTTCGAGATAGTCATGA+CGG 0.664593 1_4:+10152722 Msa0149390:CDS
CCAAGCTCTTGTCTACAGGT+CGG 0.665523 1_4:-10151848 None:intergenic
GCTTTCTTGCAGTGCCACAA+CGG 0.673342 1_4:+10151779 Msa0149390:intron
TCTCGTCTCCCATGAAACGA+AGG 0.676802 1_4:-10152601 None:intergenic
TGGCTATCGCGGATACTCCG+TGG 0.686071 1_4:-10152695 None:intergenic
TTTGAGGGACGATCATAAGG+TGG 0.697457 1_4:+10152072 Msa0149390:CDS
GTGTTCCACATGTAAAACAA+GGG 0.699010 1_4:+10151811 Msa0149390:CDS
GAACTATACCTACAGCCTCG+AGG 0.705784 1_4:+10152634 Msa0149390:CDS
CGTCCCTCAAATGTGCAACG+AGG 0.714067 1_4:-10152060 None:intergenic
GTAGCATTCTCTACTTCACG+CGG 0.721685 1_4:-10152142 None:intergenic
AACACAATGTGTGACCGTTG+TGG 0.724979 1_4:-10151793 None:intergenic
TCATTTGGGAGGGTACACCA+CGG 0.762771 1_4:+10152678 Msa0149390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGATTAATAAAATTGAA+AGG - chr1_4:10148259-10148278 None:intergenic 10.0%
!!! TTGATTATTTTTTGTTATAA+TGG + chr1_4:10148703-10148722 Msa0149390:exon 10.0%
!!! TTTTAGTTATTTTTTTAAAC+TGG + chr1_4:10150921-10150940 Msa0149390:intron 10.0%
!!! TTTAGTTATTTTTTTAAACT+GGG + chr1_4:10150922-10150941 Msa0149390:intron 10.0%
!! AATATAATAATACTAATAAG+AGG + chr1_4:10151292-10151311 Msa0149390:intron 10.0%
!!! TAATTTTTGATTTTGAAATC+TGG + chr1_4:10148658-10148677 Msa0149390:five_prime_UTR 15.0%
!!! AATTTTTGATTTTGAAATCT+GGG + chr1_4:10148659-10148678 Msa0149390:five_prime_UTR 15.0%
!!! ATTTTTTGTTATAATGGATT+TGG + chr1_4:10148709-10148728 Msa0149390:exon 15.0%
!! TAATTCTATATTCATAAATC+AGG - chr1_4:10149180-10149199 None:intergenic 15.0%
!!! TTGTTTTATAGAGAAATATT+CGG + chr1_4:10149460-10149479 Msa0149390:intron 15.0%
!! CATTACAATTCAAAATTAAT+GGG - chr1_4:10151364-10151383 None:intergenic 15.0%
!! AAAAAATAAAAAACTTTCCA+AGG - chr1_4:10151447-10151466 None:intergenic 15.0%
!! AATATTAAGTAAAATTCGAA+GGG - chr1_4:10151655-10151674 None:intergenic 15.0%
!! AAATATTAAGTAAAATTCGA+AGG - chr1_4:10151656-10151675 None:intergenic 15.0%
!! CAAAAAATCTATATTTGTAA+CGG - chr1_4:10152242-10152261 None:intergenic 15.0%
!!! TTGTCTCAAATTTTTTATTA+TGG + chr1_4:10153036-10153055 Msa0149390:three_prime_UTR 15.0%
!!! TGTCTCAAATTTTTTATTAT+GGG + chr1_4:10153037-10153056 Msa0149390:three_prime_UTR 15.0%
!! AATAAATCATCATAATCCAA+CGG + chr1_4:10148313-10148332 Msa0149390:five_prime_UTR 20.0%
!! AAGAAAATGAAAATAAGAGA+AGG - chr1_4:10148499-10148518 None:intergenic 20.0%
!!! TTTCTTCGTTTTTTTTTTCT+GGG - chr1_4:10148537-10148556 None:intergenic 20.0%
!!! TTTTCTTCGTTTTTTTTTTC+TGG - chr1_4:10148538-10148557 None:intergenic 20.0%
!!! AAATTTTCGATTTTGAAATC+TGG + chr1_4:10148627-10148646 Msa0149390:five_prime_UTR 20.0%
!!! AATTTTCGATTTTGAAATCT+GGG + chr1_4:10148628-10148647 Msa0149390:five_prime_UTR 20.0%
!! ATGAATATAGAATTAGTGAA+AGG + chr1_4:10149185-10149204 Msa0149390:intron 20.0%
!! TGAATATAGAATTAGTGAAA+GGG + chr1_4:10149186-10149205 Msa0149390:intron 20.0%
!!! AGTTGTTACTTATATTTGTA+AGG + chr1_4:10149381-10149400 Msa0149390:intron 20.0%
!! TTACTTATATTTGTAAGGTT+AGG + chr1_4:10149386-10149405 Msa0149390:intron 20.0%
!!! TGTTTTATAGAGAAATATTC+GGG + chr1_4:10149461-10149480 Msa0149390:intron 20.0%
!!! GCTTAAAATTTTAATAGTGT+TGG + chr1_4:10149904-10149923 Msa0149390:intron 20.0%
!! AATGCAATTTATATAGAGAA+TGG + chr1_4:10150752-10150771 Msa0149390:intron 20.0%
!! TACAACAATTAATCACAAAT+TGG + chr1_4:10150840-10150859 Msa0149390:intron 20.0%
!! ACAACAATTAATCACAAATT+GGG + chr1_4:10150841-10150860 Msa0149390:intron 20.0%
!! TTATTGAATAAAGAAGGAAT+CGG - chr1_4:10151244-10151263 None:intergenic 20.0%
!! GCATTACAATTCAAAATTAA+TGG - chr1_4:10151365-10151384 None:intergenic 20.0%
!! ATTAGTTAAATAGAGACTAT+TGG - chr1_4:10151416-10151435 None:intergenic 20.0%
!! AATAGTCTCTATTTAACTAA+TGG + chr1_4:10151415-10151434 Msa0149390:intron 20.0%
!! AATACCTATCAAAGAAAAAA+TGG - chr1_4:10152506-10152525 None:intergenic 20.0%
!!! TTTTTATTATGGGATTAAAG+TGG + chr1_4:10153047-10153066 Msa0149390:three_prime_UTR 20.0%
! AAGATGAAGATTGTAATCAT+GGG - chr1_4:10148476-10148495 None:intergenic 25.0%
!!! ATTTCGACGTTTTTTTATCT+AGG - chr1_4:10148611-10148630 None:intergenic 25.0%
!!! AACAATAATCATGGTGTTAT+TGG + chr1_4:10148863-10148882 Msa0149390:CDS 25.0%
! TAAAACTCAAAACCAAATTC+AGG - chr1_4:10149141-10149160 None:intergenic 25.0%
! TTAAGCTTCCACTAATAATT+TGG + chr1_4:10149286-10149305 Msa0149390:intron 25.0%
! TATATTTGTAAGGTTAGGTT+TGG + chr1_4:10149391-10149410 Msa0149390:intron 25.0%
!! TGAACTATGTGACAAAATTT+TGG + chr1_4:10149641-10149660 Msa0149390:intron 25.0%
! ATGAAGTAATCTAATGGTAA+CGG - chr1_4:10150256-10150275 None:intergenic 25.0%
! AACAATGTGTAGTAAAATGT+GGG - chr1_4:10150459-10150478 None:intergenic 25.0%
! AAACAATGTGTAGTAAAATG+TGG - chr1_4:10150460-10150479 None:intergenic 25.0%
! CAAATTCCCTCAAATATATT+GGG - chr1_4:10150708-10150727 None:intergenic 25.0%
! ACAAATTCCCTCAAATATAT+TGG - chr1_4:10150709-10150728 None:intergenic 25.0%
! AATTTCTTGAATACTGATCT+TGG + chr1_4:10150775-10150794 Msa0149390:intron 25.0%
!! ATTATTTCGGTGAAATTTTG+TGG + chr1_4:10150887-10150906 Msa0149390:intron 25.0%
! TATGTGAAAATAAACCTTAC+TGG - chr1_4:10151517-10151536 None:intergenic 25.0%
!! TTTTATTGATCTTTTAGCGA+TGG + chr1_4:10151595-10151614 Msa0149390:intron 25.0%
!! TTTATTGATCTTTTAGCGAT+GGG + chr1_4:10151596-10151615 Msa0149390:intron 25.0%
!! TAATGTGCAACTTTGTATTT+TGG + chr1_4:10152304-10152323 Msa0149390:intron 25.0%
! ATCAAAGAAAAAATGGAAGT+TGG - chr1_4:10152499-10152518 None:intergenic 25.0%
!!! ACTTCCATTTTTTCTTTGAT+AGG + chr1_4:10152499-10152518 Msa0149390:intron 25.0%
!! TGATAGGTATTTCATTGTTT+TGG + chr1_4:10152515-10152534 Msa0149390:intron 25.0%
! AAATGGAAGAAAACTCATTT+GGG + chr1_4:10152664-10152683 Msa0149390:CDS 25.0%
! GTTGTGTAATAAACAAGATT+TGG + chr1_4:10153004-10153023 Msa0149390:three_prime_UTR 25.0%
!! TAATAAACAAGATTTGGAAC+TGG + chr1_4:10153010-10153029 Msa0149390:three_prime_UTR 25.0%
!! AATAAACAAGATTTGGAACT+GGG + chr1_4:10153011-10153030 Msa0149390:three_prime_UTR 25.0%
GAAGATGAAGATTGTAATCA+TGG - chr1_4:10148477-10148496 None:intergenic 30.0%
AAGAAGAAAATTGAAGAGAG+AGG + chr1_4:10148558-10148577 Msa0149390:five_prime_UTR 30.0%
!!! GGTATGTTCTAGTTTTGATT+TGG + chr1_4:10148680-10148699 Msa0149390:five_prime_UTR 30.0%
AATGGAGGAAACAATAATCA+TGG + chr1_4:10148854-10148873 Msa0149390:CDS 30.0%
TACATTGAATTGGTACAAAC+AGG - chr1_4:10148938-10148957 None:intergenic 30.0%
AATTGGAGGATACATTGAAT+TGG - chr1_4:10148948-10148967 None:intergenic 30.0%
ATAAAGCAAACCTGATGAAT+TGG - chr1_4:10148965-10148984 None:intergenic 30.0%
TATGTGATTGATTGCATGTT+AGG + chr1_4:10149022-10149041 Msa0149390:intron 30.0%
ATGTGATTGATTGCATGTTA+GGG + chr1_4:10149023-10149042 Msa0149390:intron 30.0%
!!! ATGTTAGGGTTGTTTTTGTA+TGG + chr1_4:10149037-10149056 Msa0149390:intron 30.0%
!! TATGGTTATTGTGACTTGTT+TGG + chr1_4:10149055-10149074 Msa0149390:intron 30.0%
!! TAGTGTGATTGAGTTGATTT+GGG + chr1_4:10149095-10149114 Msa0149390:intron 30.0%
! TGTTCTTAGAGTTTTCGTTT+AGG + chr1_4:10149222-10149241 Msa0149390:intron 30.0%
ATGCTTAATCAGTGCATTTA+AGG + chr1_4:10149318-10149337 Msa0149390:intron 30.0%
!! TTAGGTTTGGATTTTAGTCA+AGG + chr1_4:10149404-10149423 Msa0149390:intron 30.0%
CTATAAAACAAACGTCAGTT+TGG - chr1_4:10149451-10149470 None:intergenic 30.0%
ACAATTGAAAATTGATCAGC+TGG + chr1_4:10149529-10149548 Msa0149390:intron 30.0%
AGTCTGATCTTTATTGAACT+AGG - chr1_4:10149573-10149592 None:intergenic 30.0%
GTTCAATAAAGATCAGACTT+CGG + chr1_4:10149574-10149593 Msa0149390:intron 30.0%
ACATAAGTTGTAGCTAATCT+CGG + chr1_4:10149710-10149729 Msa0149390:intron 30.0%
!! GAGCATTTTAACAAGCTATA+CGG - chr1_4:10149738-10149757 None:intergenic 30.0%
CCAAAGCAATACATCTAAAA+TGG - chr1_4:10149835-10149854 None:intergenic 30.0%
! CCATTTTAGATGTATTGCTT+TGG + chr1_4:10149832-10149851 Msa0149390:intron 30.0%
TTAGATGTATTGCTTTGGTT+TGG + chr1_4:10149837-10149856 Msa0149390:intron 30.0%
! TAGATGTATTGCTTTGGTTT+GGG + chr1_4:10149838-10149857 Msa0149390:intron 30.0%
!! TGGATAAAGGCACTAAAAAA+TGG - chr1_4:10150093-10150112 None:intergenic 30.0%
TGAAGTAATCTAATGGTAAC+GGG - chr1_4:10150255-10150274 None:intergenic 30.0%
GAATGCATGAAGTAATCTAA+TGG - chr1_4:10150262-10150281 None:intergenic 30.0%
GGTTAAAAAAAAACCAGAAG+CGG - chr1_4:10150367-10150386 None:intergenic 30.0%
TAACAAAAACAATGGCTAGA+AGG - chr1_4:10150431-10150450 None:intergenic 30.0%
TTCACCATGGTATTCAAAAT+CGG + chr1_4:10150515-10150534 Msa0149390:intron 30.0%
! CTTAGAATCGTACACTTTTA+CGG + chr1_4:10150547-10150566 Msa0149390:intron 30.0%
ACACAACCCAATATATTTGA+GGG + chr1_4:10150699-10150718 Msa0149390:intron 30.0%
TAATGTTCATTGTATTGGGA+AGG + chr1_4:10150816-10150835 Msa0149390:intron 30.0%
AAATAATTGCTGTAAATGGC+TGG - chr1_4:10150874-10150893 None:intergenic 30.0%
GCCATTTACAGCAATTATTT+CGG + chr1_4:10150874-10150893 Msa0149390:intron 30.0%
ACCGAAATAATTGCTGTAAA+TGG - chr1_4:10150878-10150897 None:intergenic 30.0%
TTACGAATTATGATTCTGCT+TGG + chr1_4:10151054-10151073 Msa0149390:intron 30.0%
TTTCGCACTGGATATTAAAT+TGG - chr1_4:10151197-10151216 None:intergenic 30.0%
CGACAGTTATTGAATAAAGA+AGG - chr1_4:10151250-10151269 None:intergenic 30.0%
ATAAGAGGTCTAACAGATTT+CGG + chr1_4:10151307-10151326 Msa0149390:intron 30.0%
AAAATAACAAATCGTACGAG+AGG - chr1_4:10151340-10151359 None:intergenic 30.0%
TATTAAGGGAGTAATGTATG+TGG + chr1_4:10151467-10151486 Msa0149390:intron 30.0%
!! GCTTAGTTCTTTTCTCTAAT+TGG + chr1_4:10151547-10151566 Msa0149390:intron 30.0%
! TTATTGATCTTTTAGCGATG+GGG + chr1_4:10151597-10151616 Msa0149390:intron 30.0%
CAAATGGAAGAAAACTCATT+TGG + chr1_4:10152663-10152682 Msa0149390:CDS 30.0%
CCATATTTCGTTGAATTATG+AGG - chr1_4:10152748-10152767 None:intergenic 30.0%
CCTCATAATTCAACGAAATA+TGG + chr1_4:10152745-10152764 Msa0149390:CDS 30.0%
TATTACAACACACACAAAGT+TGG - chr1_4:10152937-10152956 None:intergenic 30.0%
AAATTTCAAAGCCATCATCT+TGG - chr1_4:10152970-10152989 None:intergenic 30.0%
TCACAATACAACCTCAAACT+AGG + chr1_4:10148354-10148373 Msa0149390:five_prime_UTR 35.0%
AAAATTGAAGAGAGAGGAAG+CGG + chr1_4:10148564-10148583 Msa0149390:five_prime_UTR 35.0%
TGTTTCTTCTTCTGATGGAA+TGG + chr1_4:10148745-10148764 Msa0149390:CDS 35.0%
!! TGATGATGTTGTTGATGATG+TGG - chr1_4:10148803-10148822 None:intergenic 35.0%
TCTTCATTGAAACCTCGTAA+TGG + chr1_4:10148836-10148855 Msa0149390:CDS 35.0%
TTATTGTTTCCTCCATTACG+AGG - chr1_4:10148851-10148870 None:intergenic 35.0%
TACAAGTGTTCATGAGTTGT+TGG + chr1_4:10148907-10148926 Msa0149390:CDS 35.0%
AATGTATCCTCCAATTCATC+AGG + chr1_4:10148952-10148971 Msa0149390:CDS 35.0%
!! GTAGTGTGATTGAGTTGATT+TGG + chr1_4:10149094-10149113 Msa0149390:intron 35.0%
!! AGTGTGATTGAGTTGATTTG+GGG + chr1_4:10149096-10149115 Msa0149390:intron 35.0%
CGAACAGTCCAAATTATTAG+TGG - chr1_4:10149297-10149316 None:intergenic 35.0%
AATCAGTGCATTTAAGGAAC+TGG + chr1_4:10149324-10149343 Msa0149390:intron 35.0%
! CCATTGCGAGCATTTTTATA+AGG - chr1_4:10149360-10149379 None:intergenic 35.0%
CCTTATAAAAATGCTCGCAA+TGG + chr1_4:10149357-10149376 Msa0149390:intron 35.0%
ATAGAGAAATATTCGGGCAA+AGG + chr1_4:10149467-10149486 Msa0149390:intron 35.0%
!! TGTGACAAAATTTTGGCAAG+TGG + chr1_4:10149648-10149667 Msa0149390:intron 35.0%
!! ATAGCTTGTTAAAATGCTCC+AGG + chr1_4:10149739-10149758 Msa0149390:intron 35.0%
!!! ACTCTAAAGCATTTTCAACC+TGG - chr1_4:10149760-10149779 None:intergenic 35.0%
AGTTGTAGCATGTCTTTAGT+AGG + chr1_4:10149777-10149796 Msa0149390:intron 35.0%
GTTGTAGCATGTCTTTAGTA+GGG + chr1_4:10149778-10149797 Msa0149390:intron 35.0%
AATGGTCATGACATGACATA+AGG - chr1_4:10149817-10149836 None:intergenic 35.0%
!! AATAGTGTTGGTTATTGACC+TGG + chr1_4:10149916-10149935 Msa0149390:intron 35.0%
! GTCAAAAAGGCTTTAATACC+AGG - chr1_4:10149937-10149956 None:intergenic 35.0%
CTGAAACATTGAGAGCAATA+AGG - chr1_4:10149980-10149999 None:intergenic 35.0%
AAAGATTGTGCTGTGGATAA+AGG - chr1_4:10150106-10150125 None:intergenic 35.0%
TGTCATAAAAGATTGTGCTG+TGG - chr1_4:10150113-10150132 None:intergenic 35.0%
! GCACAATCTTTTATGACAGT+TGG + chr1_4:10150115-10150134 Msa0149390:intron 35.0%
!! AATCTAATGGTAACGGGTTT+AGG - chr1_4:10150249-10150268 None:intergenic 35.0%
!! TTTTTAACCACTTTTAGCCG+TGG + chr1_4:10150378-10150397 Msa0149390:intron 35.0%
!! TTTTAACCACTTTTAGCCGT+GGG + chr1_4:10150379-10150398 Msa0149390:intron 35.0%
GGGAACAGTAACAAAAACAA+TGG - chr1_4:10150439-10150458 None:intergenic 35.0%
! TAACAACACACTTTTCACCA+TGG + chr1_4:10150502-10150521 Msa0149390:intron 35.0%
!! AATCGTAATTTGCTAGCAGA+CGG + chr1_4:10150605-10150624 Msa0149390:intron 35.0%
CACACAACCCAATATATTTG+AGG + chr1_4:10150698-10150717 Msa0149390:intron 35.0%
! ATCTTGGAGAAGTATGACTT+TGG + chr1_4:10150791-10150810 Msa0149390:intron 35.0%
! TCTTGGAGAAGTATGACTTT+GGG + chr1_4:10150792-10150811 Msa0149390:intron 35.0%
TGGGCTAATGTTCATTGTAT+TGG + chr1_4:10150811-10150830 Msa0149390:intron 35.0%
GGGCTAATGTTCATTGTATT+GGG + chr1_4:10150812-10150831 Msa0149390:intron 35.0%
! TTCTGCAAATTCTGGGTTTT+GGG - chr1_4:10150967-10150986 None:intergenic 35.0%
TGAATAAAGAAGGAATCGGA+AGG - chr1_4:10151240-10151259 None:intergenic 35.0%
!!! ATGCTTTGTTTTATGTCCTC+TGG + chr1_4:10151381-10151400 Msa0149390:intron 35.0%
TTAACTAATGGTTGCTACCT+TGG + chr1_4:10151427-10151446 Msa0149390:intron 35.0%
AACATGAAGTAGTACCAGTA+AGG + chr1_4:10151500-10151519 Msa0149390:intron 35.0%
ACTTAGGAAGATGTCAAATG+AGG - chr1_4:10151708-10151727 None:intergenic 35.0%
!! AATCATGCTAATGTCGACTT+AGG - chr1_4:10151724-10151743 None:intergenic 35.0%
TGTGTTCCACATGTAAAACA+AGG + chr1_4:10151810-10151829 Msa0149390:CDS 35.0%
GTGTTCCACATGTAAAACAA+GGG + chr1_4:10151811-10151830 Msa0149390:CDS 35.0%
CTGTAGTATGGAAAGATTTC+TGG - chr1_4:10151950-10151969 None:intergenic 35.0%
! GATTTGACTTCACATAACGA+TGG - chr1_4:10152123-10152142 None:intergenic 35.0%
ACTGTCAGATCAAGATCAAA+TGG - chr1_4:10152358-10152377 None:intergenic 35.0%
! CATGACTATCTCGAACTTTT+CGG - chr1_4:10152721-10152740 None:intergenic 35.0%
AAAGTTCGAGATAGTCATGA+CGG + chr1_4:10152722-10152741 Msa0149390:CDS 35.0%
!! AATATGGCCCTATTTTTCTC+CGG + chr1_4:10152761-10152780 Msa0149390:CDS 35.0%
GAACTGAAATTAAGAGTCAC+AGG + chr1_4:10152797-10152816 Msa0149390:CDS 35.0%
TAAGAGTCACAGGAAGAATA+TGG + chr1_4:10152807-10152826 Msa0149390:CDS 35.0%
AAAGAACAACAGAATCCAGA+TGG + chr1_4:10152830-10152849 Msa0149390:CDS 35.0%
GGTTGTATTGTGAGAGAGAA+AGG - chr1_4:10148347-10148366 None:intergenic 40.0%
TCTCTCTCTTACCTAGTTTG+AGG - chr1_4:10148368-10148387 None:intergenic 40.0%
TCATGGGTCGATGAAAAAAG+TGG - chr1_4:10148460-10148479 None:intergenic 40.0%
GAGTGTGTTTCTTCTTCTGA+TGG + chr1_4:10148740-10148759 Msa0149390:CDS 40.0%
GTGGATGAAGAATACGATGT+TGG - chr1_4:10148784-10148803 None:intergenic 40.0%
TCATTGAAACCTCGTAATGG+AGG + chr1_4:10148839-10148858 Msa0149390:CDS 40.0%
AACTCATGAACACTTGTAGC+AGG - chr1_4:10148905-10148924 None:intergenic 40.0%
AAGCAAACCTGATGAATTGG+AGG - chr1_4:10148962-10148981 None:intergenic 40.0%
! ATTTGGGGCTTATGATGATG+AGG + chr1_4:10149111-10149130 Msa0149390:intron 40.0%
TGATGAGGATGTCCTGAATT+TGG + chr1_4:10149126-10149145 Msa0149390:intron 40.0%
AGATCAGACTTCGGACATAT+AGG + chr1_4:10149583-10149602 Msa0149390:intron 40.0%
TGCACTTCATCTCAAGAGAT+TGG - chr1_4:10149689-10149708 None:intergenic 40.0%
! TTAAAGCCTTTTTGACCGAG+TGG + chr1_4:10149941-10149960 Msa0149390:intron 40.0%
CTCAAAAAGATCTTGCTCGA+GGG + chr1_4:10150049-10150068 Msa0149390:intron 40.0%
AAGATATTTCTCAGGCAAGG+TGG - chr1_4:10150316-10150335 None:intergenic 40.0%
ACCTTGCCTGAGAAATATCT+TGG + chr1_4:10150315-10150334 Msa0149390:intron 40.0%
ACCAAGATATTTCTCAGGCA+AGG - chr1_4:10150319-10150338 None:intergenic 40.0%
AACGCACCAAGATATTTCTC+AGG - chr1_4:10150324-10150343 None:intergenic 40.0%
! GAGAAATATCTTGGTGCGTT+TGG + chr1_4:10150324-10150343 Msa0149390:intron 40.0%
!! GCAACCGATTTTGAATACCA+TGG - chr1_4:10150522-10150541 None:intergenic 40.0%
TGCCACTAAACACGGTAATA+GGG - chr1_4:10150580-10150599 None:intergenic 40.0%
TTGCCACTAAACACGGTAAT+AGG - chr1_4:10150581-10150600 None:intergenic 40.0%
ATTGTGCTTGCCACTAAACA+CGG - chr1_4:10150588-10150607 None:intergenic 40.0%
ATTCACGTTCTGCAGATTCT+AGG + chr1_4:10150660-10150679 Msa0149390:intron 40.0%
AGGGAATTTGTGACTGTATG+AGG + chr1_4:10150718-10150737 Msa0149390:intron 40.0%
ATTGCTGTAAATGGCTGGAA+CGG - chr1_4:10150869-10150888 None:intergenic 40.0%
! GTTCTGCAAATTCTGGGTTT+TGG - chr1_4:10150968-10150987 None:intergenic 40.0%
CTACACGTTCTGCAAATTCT+GGG - chr1_4:10150974-10150993 None:intergenic 40.0%
TCTACACGTTCTGCAAATTC+TGG - chr1_4:10150975-10150994 None:intergenic 40.0%
CAGAACGTGTAGAATCGTAA+TGG + chr1_4:10150982-10151001 Msa0149390:intron 40.0%
GTTGTGCTATGTGTTGGAAT+CGG - chr1_4:10151013-10151032 None:intergenic 40.0%
ACCAACTTGGCAGTCAAAAT+CGG - chr1_4:10151140-10151159 None:intergenic 40.0%
!! GTAGGCATTTATTTTCGCAC+TGG - chr1_4:10151209-10151228 None:intergenic 40.0%
! AATCGGAAGGAAAAGTTGGT+AGG - chr1_4:10151227-10151246 None:intergenic 40.0%
AAGGAATCGGAAGGAAAAGT+TGG - chr1_4:10151231-10151250 None:intergenic 40.0%
AAGGGCAAGAAGTAACATTC+TGG - chr1_4:10151637-10151656 None:intergenic 40.0%
TAGGAAGATGTCAAATGAGG+AGG - chr1_4:10151705-10151724 None:intergenic 40.0%
GACAAGAGCTTGGAGATATT+AGG + chr1_4:10151858-10151877 Msa0149390:CDS 40.0%
CCAAGAGAGTAGTATTTGCA+TGG - chr1_4:10151923-10151942 None:intergenic 40.0%
CCATGCAAATACTACTCTCT+TGG + chr1_4:10151920-10151939 Msa0149390:CDS 40.0%
ATTTCCTCGTTGCACATTTG+AGG + chr1_4:10152056-10152075 Msa0149390:CDS 40.0%
TTTCCTCGTTGCACATTTGA+GGG + chr1_4:10152057-10152076 Msa0149390:CDS 40.0%
ACATTTGAGGGACGATCATA+AGG + chr1_4:10152069-10152088 Msa0149390:CDS 40.0%
GTGAAGTAGAGAATGCTACT+TGG + chr1_4:10152146-10152165 Msa0149390:CDS 40.0%
AACGGCACATATTTGACAGA+GGG - chr1_4:10152224-10152243 None:intergenic 40.0%
TAACGGCACATATTTGACAG+AGG - chr1_4:10152225-10152244 None:intergenic 40.0%
CACAATCACCAGATCAAGAT+TGG + chr1_4:10152276-10152295 Msa0149390:intron 40.0%
ATCACCAGATCAAGATTGGA+CGG + chr1_4:10152280-10152299 Msa0149390:intron 40.0%
AATGGCTCGTGTTTCAACTT+TGG - chr1_4:10152340-10152359 None:intergenic 40.0%
! CAAAGTGAAGGCAGAAGTAT+TGG - chr1_4:10152541-10152560 None:intergenic 40.0%
ATGGCATTCCTTCGTTTCAT+GGG + chr1_4:10152593-10152612 Msa0149390:CDS 40.0%
TGGAAGAAAACTCATTTGGG+AGG + chr1_4:10152667-10152686 Msa0149390:CDS 40.0%
GGAAGAAAACTCATTTGGGA+GGG + chr1_4:10152668-10152687 Msa0149390:CDS 40.0%
ATCACCACCGGAGAAAAATA+GGG - chr1_4:10152771-10152790 None:intergenic 40.0%
TATCACCACCGGAGAAAAAT+AGG - chr1_4:10152772-10152791 None:intergenic 40.0%
! TATTTTTCTCCGGTGGTGAT+AGG + chr1_4:10152771-10152790 Msa0149390:CDS 40.0%
AACAACAGAATCCAGATGGT+GGG + chr1_4:10152834-10152853 Msa0149390:CDS 40.0%
ACACATCAGCTGCAAAGATT+TGG - chr1_4:10152869-10152888 None:intergenic 40.0%
AGAGTAAGACACCAAGATGA+TGG + chr1_4:10152956-10152975 Msa0149390:three_prime_UTR 40.0%
GAGAAAGGAACAAGAACCGT+TGG - chr1_4:10148332-10148351 None:intergenic 45.0%
TCCAAACCACTCGGTCAAAA+AGG - chr1_4:10149950-10149969 None:intergenic 45.0%
GAAGCTGAGTTTCACACGTT+TGG + chr1_4:10150004-10150023 Msa0149390:intron 45.0%
CTGAGTTTCACACGTTTGGT+TGG + chr1_4:10150008-10150027 Msa0149390:intron 45.0%
! TTTCACACGTTTGGTTGGTC+TGG + chr1_4:10150013-10150032 Msa0149390:intron 45.0%
!! TTCACACGTTTGGTTGGTCT+GGG + chr1_4:10150014-10150033 Msa0149390:intron 45.0%
! CCTCGAGCAAGATCTTTTTG+AGG - chr1_4:10150051-10150070 None:intergenic 45.0%
CCTCAAAAAGATCTTGCTCG+AGG + chr1_4:10150048-10150067 Msa0149390:intron 45.0%
TGAAACTTGCCACTCAACAG+CGG - chr1_4:10150185-10150204 None:intergenic 45.0%
GCGCAAATGTCTGAAAATCG+TGG - chr1_4:10150294-10150313 None:intergenic 45.0%
! ATTGAGCTTGTTTCCGCTTC+TGG + chr1_4:10150351-10150370 Msa0149390:intron 45.0%
!! TACCTTTTGATGGGTGTTCG+AGG + chr1_4:10150404-10150423 Msa0149390:intron 45.0%
CTCCCTATTACCGTGTTTAG+TGG + chr1_4:10150575-10150594 Msa0149390:intron 45.0%
TCTGCAGATTCTAGGTTTCC+CGG + chr1_4:10150668-10150687 Msa0149390:intron 45.0%
!!! CAAATTCTGGGTTTTGGGTC+GGG - chr1_4:10150962-10150981 None:intergenic 45.0%
!!! GCAAATTCTGGGTTTTGGGT+CGG - chr1_4:10150963-10150982 None:intergenic 45.0%
GGAATCGTTGTGCTATGTGT+TGG - chr1_4:10151019-10151038 None:intergenic 45.0%
!! TCGTAATTTGCTAGCAGCAG+TGG - chr1_4:10151040-10151059 None:intergenic 45.0%
! ATTCTGCTTGGCACTGAACA+CGG + chr1_4:10151066-10151085 Msa0149390:intron 45.0%
CCAACTTGGCAGTCAAAATC+GGG - chr1_4:10151139-10151158 None:intergenic 45.0%
TAGGAAGAGAGAGACCAACT+TGG - chr1_4:10151153-10151172 None:intergenic 45.0%
CTTCCTAGAACTCAAGAGCT+TGG + chr1_4:10151166-10151185 Msa0149390:intron 45.0%
AGACCAAGCTCTTGAGTTCT+AGG - chr1_4:10151172-10151191 None:intergenic 45.0%
AAGGGAGTAATGTATGTGGC+AGG + chr1_4:10151471-10151490 Msa0149390:intron 45.0%
AGGGAGTAATGTATGTGGCA+GGG + chr1_4:10151472-10151491 Msa0149390:intron 45.0%
GTAATGTATGTGGCAGGGAA+TGG + chr1_4:10151477-10151496 Msa0149390:intron 45.0%
! ATCTTTTAGCGATGGGGTTC+TGG + chr1_4:10151603-10151622 Msa0149390:intron 45.0%
AACACAATGTGTGACCGTTG+TGG - chr1_4:10151796-10151815 None:intergenic 45.0%
!!! GTGCACCCTTGTTTTACATG+TGG - chr1_4:10151819-10151838 None:intergenic 45.0%
ATCTCCAAGCTCTTGTCTAC+AGG - chr1_4:10151855-10151874 None:intergenic 45.0%
GCTTGGAGATATTAGGTGTC+TGG + chr1_4:10151865-10151884 Msa0149390:CDS 45.0%
AGATATTAGGTGTCTGGCAC+TGG + chr1_4:10151871-10151890 Msa0149390:CDS 45.0%
!! TGCTTCAGCTTGCTGTAGTA+TGG - chr1_4:10151962-10151981 None:intergenic 45.0%
TTTGAGGGACGATCATAAGG+TGG + chr1_4:10152072-10152091 Msa0149390:CDS 45.0%
GTAGCATTCTCTACTTCACG+CGG - chr1_4:10152145-10152164 None:intergenic 45.0%
TTAGCCGTCCAATCTTGATC+TGG - chr1_4:10152287-10152306 None:intergenic 45.0%
ACTCGTCAGCTCGTTATTCA+CGG - chr1_4:10152394-10152413 None:intergenic 45.0%
GCTGGAAAGCTTCAAAGTGA+AGG - chr1_4:10152553-10152572 None:intergenic 45.0%
!! CACTTTGAAGCTTTCCAGCT+AGG + chr1_4:10152554-10152573 Msa0149390:CDS 45.0%
CGAAGGAATGCCATGTAAAC+TGG - chr1_4:10152587-10152606 None:intergenic 45.0%
CATGGCATTCCTTCGTTTCA+TGG + chr1_4:10152592-10152611 Msa0149390:CDS 45.0%
! GACTATCTCGAACTTTTCGG+TGG - chr1_4:10152718-10152737 None:intergenic 45.0%
GAACAACAGAATCCAGATGG+TGG + chr1_4:10152833-10152852 Msa0149390:CDS 45.0%
ACAACAGAATCCAGATGGTG+GGG + chr1_4:10152835-10152854 Msa0149390:CDS 45.0%
!! ATTAGTATTATTATATTATT+AGG - chr1_4:10151289-10151308 None:intergenic 5.0%
!!! AGTTTTTTATTTTTTTATTA+AGG + chr1_4:10151452-10151471 Msa0149390:intron 5.0%
!!! GTTTTTTATTTTTTTATTAA+GGG + chr1_4:10151453-10151472 Msa0149390:intron 5.0%
ACTTCGGACATATAGGCTGC+AGG + chr1_4:10149590-10149609 Msa0149390:intron 50.0%
CTTCGGACATATAGGCTGCA+GGG + chr1_4:10149591-10149610 Msa0149390:intron 50.0%
! GCCTTTTTGACCGAGTGGTT+TGG + chr1_4:10149946-10149965 Msa0149390:intron 50.0%
GGATTGCACTCCAAACCACT+CGG - chr1_4:10149959-10149978 None:intergenic 50.0%
!! TCACACGTTTGGTTGGTCTG+GGG + chr1_4:10150015-10150034 Msa0149390:intron 50.0%
GCTGTTGAGTGGCAAGTTTC+AGG + chr1_4:10150184-10150203 Msa0149390:intron 50.0%
TTTCAGGCCAACAACCACAC+CGG + chr1_4:10150200-10150219 Msa0149390:intron 50.0%
GGTTTAGGCTGATCTGTGAG+TGG - chr1_4:10150234-10150253 None:intergenic 50.0%
CTGAAAATCGTGGAGCGTGT+GGG - chr1_4:10150284-10150303 None:intergenic 50.0%
TCTGAAAATCGTGGAGCGTG+TGG - chr1_4:10150285-10150304 None:intergenic 50.0%
CCCATCAAAAGGTAGACCCA+CGG - chr1_4:10150398-10150417 None:intergenic 50.0%
! CCGTGGGTCTACCTTTTGAT+GGG + chr1_4:10150395-10150414 Msa0149390:intron 50.0%
GTCCTCGAACACCCATCAAA+AGG - chr1_4:10150409-10150428 None:intergenic 50.0%
!! CGTAATTTGCTAGCAGACGG+TGG + chr1_4:10150608-10150627 Msa0149390:intron 50.0%
CTGCAGATTCTAGGTTTCCC+GGG + chr1_4:10150669-10150688 Msa0149390:intron 50.0%
AGATTCTAGGTTTCCCGGGT+CGG + chr1_4:10150673-10150692 Msa0149390:intron 50.0%
! TTGGCACTGAACACGGTGAT+AGG + chr1_4:10151073-10151092 Msa0149390:intron 50.0%
! TGGCACTGAACACGGTGATA+GGG + chr1_4:10151074-10151093 Msa0149390:intron 50.0%
!!! CCCGATTTTGACTGCCAAGT+TGG + chr1_4:10151136-10151155 Msa0149390:intron 50.0%
CTATTGGTGTGCTCAACCAG+AGG - chr1_4:10151400-10151419 None:intergenic 50.0%
GCTTTCTTGCAGTGCCACAA+CGG + chr1_4:10151779-10151798 Msa0149390:intron 50.0%
CCAAGCTCTTGTCTACAGGT+CGG - chr1_4:10151851-10151870 None:intergenic 50.0%
! TAGGTGTCTGGCACTGGAAA+AGG + chr1_4:10151877-10151896 Msa0149390:CDS 50.0%
CCAGCATAGGGACAAGTGTA+TGG - chr1_4:10152007-10152026 None:intergenic 50.0%
CCATACACTTGTCCCTATGC+TGG + chr1_4:10152004-10152023 Msa0149390:CDS 50.0%
GAGCACTCTGATCCAGCATA+GGG - chr1_4:10152019-10152038 None:intergenic 50.0%
! AGAGCACTCTGATCCAGCAT+AGG - chr1_4:10152020-10152039 None:intergenic 50.0%
CATAAGGTGGACATGCACAC+AGG + chr1_4:10152085-10152104 Msa0149390:CDS 50.0%
TGAAGCTTTCCAGCTAGGCA+TGG + chr1_4:10152559-10152578 Msa0149390:CDS 50.0%
AGGCATGGCTCCAGTTTACA+TGG + chr1_4:10152574-10152593 Msa0149390:CDS 50.0%
TCTCGTCTCCCATGAAACGA+AGG - chr1_4:10152604-10152623 None:intergenic 50.0%
TTTCATGGGAGACGAGAACG+AGG + chr1_4:10152607-10152626 Msa0149390:CDS 50.0%
GAACTATACCTACAGCCTCG+AGG + chr1_4:10152634-10152653 Msa0149390:CDS 50.0%
TATACCTACAGCCTCGAGGT+TGG + chr1_4:10152638-10152657 Msa0149390:CDS 50.0%
ATACCTACAGCCTCGAGGTT+GGG + chr1_4:10152639-10152658 Msa0149390:CDS 50.0%
! TCATTTGGGAGGGTACACCA+CGG + chr1_4:10152678-10152697 Msa0149390:CDS 50.0%
! GAACTTTTCGGTGGCTATCG+CGG - chr1_4:10152709-10152728 None:intergenic 50.0%
!! ATGGCCCTATTTTTCTCCGG+TGG + chr1_4:10152764-10152783 Msa0149390:CDS 50.0%
TTTCTCCGGTGGTGATAGGA+AGG + chr1_4:10152775-10152794 Msa0149390:CDS 50.0%
CAGTTCCTTCCTATCACCAC+CGG - chr1_4:10152783-10152802 None:intergenic 50.0%
GGTATACAAACCCCACCATC+TGG - chr1_4:10152848-10152867 None:intergenic 50.0%
CACTGTCTTCCGCTGTTGAG+TGG + chr1_4:10150173-10150192 Msa0149390:intron 55.0%
ATACCCTCCGGTGTGGTTGT+TGG - chr1_4:10150210-10150229 None:intergenic 55.0%
TCTGTGAGTGGCATACCCTC+CGG - chr1_4:10150222-10150241 None:intergenic 55.0%
GGTAGACCCACGGCTAAAAG+TGG - chr1_4:10150388-10150407 None:intergenic 55.0%
! GCCGTGGGTCTACCTTTTGA+TGG + chr1_4:10150394-10150413 Msa0149390:intron 55.0%
GATTCTAGGTTTCCCGGGTC+GGG + chr1_4:10150674-10150693 Msa0149390:intron 55.0%
!! TGGGTCGGGACTGGTTTCAA+TGG - chr1_4:10150948-10150967 None:intergenic 55.0%
!! GCGATGGGGTTCTGGTTCAT+AGG + chr1_4:10151611-10151630 Msa0149390:intron 55.0%
CCGACCTGTAGACAAGAGCT+TGG + chr1_4:10151848-10151867 Msa0149390:CDS 55.0%
! GGATCAGAGTGCTCTGCTGT+TGG + chr1_4:10152025-10152044 Msa0149390:CDS 55.0%
CGTCCCTCAAATGTGCAACG+AGG - chr1_4:10152063-10152082 None:intergenic 55.0%
AAACTGGAGCCATGCCTAGC+TGG - chr1_4:10152571-10152590 None:intergenic 55.0%
TACCTACAGCCTCGAGGTTG+GGG + chr1_4:10152640-10152659 Msa0149390:CDS 55.0%
TTCCATTTGCCCCAACCTCG+AGG - chr1_4:10152652-10152671 None:intergenic 55.0%
AGGCCAACAACCACACCGGA+GGG + chr1_4:10150204-10150223 Msa0149390:intron 60.0%
GACGGTGGAATCGTCGTGCT+AGG + chr1_4:10150623-10150642 Msa0149390:intron 60.0%
GGTGGAATCGTCGTGCTAGG+TGG + chr1_4:10150626-10150645 Msa0149390:intron 60.0%
GGAATCGTCGTGCTAGGTGG+TGG + chr1_4:10150629-10150648 Msa0149390:intron 60.0%
! TTGGGTTGTGTGACCCGACC+CGG - chr1_4:10150690-10150709 None:intergenic 60.0%
!!! TCTGGGTTTTGGGTCGGGAC+TGG - chr1_4:10150957-10150976 None:intergenic 60.0%
TGGGAGACGAGAACGAGGCT+CGG + chr1_4:10152612-10152631 Msa0149390:CDS 60.0%
AGCCTCGAGGTTGGGGCAAA+TGG + chr1_4:10152647-10152666 Msa0149390:CDS 60.0%
TGGCTATCGCGGATACTCCG+TGG - chr1_4:10152698-10152717 None:intergenic 60.0%
CAGGCCAACAACCACACCGG+AGG + chr1_4:10150203-10150222 Msa0149390:intron 65.0%
GAGTGGCATACCCTCCGGTG+TGG - chr1_4:10150217-10150236 None:intergenic 65.0%
TGGGTTGTGTGACCCGACCC+GGG - chr1_4:10150689-10150708 None:intergenic 65.0%
TGCCCCAACCTCGAGGCTGT+AGG - chr1_4:10152645-10152664 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10148237 10153078 10148237 ID=Msa0149390;Name=Msa0149390
chr1_4 mRNA 10148237 10153078 10148237 ID=Msa0149390-mRNA-1;Parent=Msa0149390;Name=Msa0149390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=485|1|1|1|0.5|0.66|3|195|333
chr1_4 exon 10148237 10148973 10148237 ID=Msa0149390-mRNA-1:exon:4285;Parent=Msa0149390-mRNA-1
chr1_4 exon 10151791 10152177 10151791 ID=Msa0149390-mRNA-1:exon:4286;Parent=Msa0149390-mRNA-1
chr1_4 exon 10152521 10153078 10152521 ID=Msa0149390-mRNA-1:exon:4287;Parent=Msa0149390-mRNA-1
chr1_4 five_prime_UTR 10148237 10148721 10148237 ID=Msa0149390-mRNA-1:five_prime_utr;Parent=Msa0149390-mRNA-1
chr1_4 CDS 10148722 10148973 10148722 ID=Msa0149390-mRNA-1:cds;Parent=Msa0149390-mRNA-1
chr1_4 CDS 10151791 10152177 10151791 ID=Msa0149390-mRNA-1:cds;Parent=Msa0149390-mRNA-1
chr1_4 CDS 10152521 10152883 10152521 ID=Msa0149390-mRNA-1:cds;Parent=Msa0149390-mRNA-1
chr1_4 three_prime_UTR 10152884 10153078 10152884 ID=Msa0149390-mRNA-1:three_prime_utr;Parent=Msa0149390-mRNA-1
Gene Sequence

>Msa0149390

ATGGATTTGGATAGTATTGAGTGTGTTTCTTCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCACATCATCAACAACATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACAATAATCATGGTGTTATTGGTTCTACTGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACCTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTTGCTGAATCACTCGAGTTACCATGCAAATACTACTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTTAGACCATACACTTGTCCCTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTAATTTCCTCGTTGCACATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAGGCTCGGAACTATACCTACAGCCTCGAGGTTGGGGCAAATGGAAGAAAACTCATTTGGGAGGGTACACCACGGAGTATCCGCGATAGCCACCGAAAAGTTCGAGATAGTCATGACGGCCTCATAATTCAACGAAATATGGCCCTATTTTTCTCCGGTGGTGATAGGAAGGAACTGAAATTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGGGTTTGTATACCAAATCTTTGCAGCTGA
Protein sequence

>Msa0149390

MDLDSIECVSSSDGMDEDEIQHRILHPHHQQHHHHSEFSSLKPRNGGNNNHGVIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS*