AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0812140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812140 MtrunA17_Chr5g0428771 99.346 153 1 0 1 153 1 153 2.50e-113 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812140 AT1G04635.1 60.526 152 55 2 3 153 4 151 3.62e-65 196

Find 53 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGCATCTTGGTGAATTT+TGG 0.109041 5_3:-42065840 Msa0812140:CDS
TGCATCACTGGGATCATTTC+AGG 0.134096 5_3:-42065802 Msa0812140:CDS
CTAATGTACTATAGTCTTAA+TGG 0.211551 5_3:-42063053 Msa0812140:three_prime_UTR
GTGTGGTTTGGCTGCATCAC+TGG 0.252366 5_3:-42065814 Msa0812140:CDS
ATCTATAGTTACAGGCTTAC+AGG 0.265987 5_3:-42063181 Msa0812140:three_prime_UTR
TCAAGACTATCTATAGTTAC+AGG 0.267411 5_3:-42063189 Msa0812140:three_prime_UTR
TTTAATTTGCTTGATTTATC+TGG 0.270551 5_3:-42065537 Msa0812140:intron
CTTTGGTTCAGGAAATTTAC+AGG 0.272476 5_3:-42063537 Msa0812140:intron
GTCTGTGTTCAATCACAAAT+TGG 0.274240 5_3:-42063372 Msa0812140:three_prime_UTR
ATTTGAGCAGTTCAAACTTA+TGG 0.275431 5_3:-42063477 Msa0812140:CDS
TCTTGCTAAGATCGAAGTTT+TGG 0.279590 5_3:-42063408 Msa0812140:CDS
TCACTAATGTGTGCATCATT+AGG 0.290850 5_3:-42065635 Msa0812140:CDS
CCCGCCGCTTGGTCCTTGTT+AGG 0.311025 5_3:+42065909 None:intergenic
CACAAATTGGCCACAACTCT+TGG 0.337659 5_3:-42063359 Msa0812140:three_prime_UTR
TCAAGCAAATTAAACACAAC+TGG 0.340230 5_3:+42065546 None:intergenic
CTTGCTTCAATTTGTTAGTC+AGG 0.340332 5_3:+42063076 None:intergenic
CACTAATGTGTGCATCATTA+GGG 0.362836 5_3:-42065634 Msa0812140:CDS
GATGGAGCTTATACCATTCA+TGG 0.376840 5_3:+42063133 None:intergenic
TAGAAAATGCTGCTATCTCC+TGG 0.379620 5_3:-42062876 Msa0812140:three_prime_UTR
CTCTCTCTGCGCTCTCGTCC+AGG 0.394548 5_3:-42067460 Msa0812140:five_prime_UTR
ATCACAATGGTCAGAAGTAT+TGG 0.427749 5_3:-42065576 Msa0812140:CDS
ATGATGCACACATTAGTGAT+TGG 0.442861 5_3:+42065639 None:intergenic
ACCTCCATTGTAACCATGAA+TGG 0.479248 5_3:-42063146 Msa0812140:three_prime_UTR
GTTGTGCGATTCTCCACTCC+AGG 0.495971 5_3:-42067438 Msa0812140:intron
GTCTGTCTGTACTAGAATGA+TGG 0.511160 5_3:+42063115 None:intergenic
GGGTTCTAGGAAAAGGGTGA+TGG 0.511596 5_3:-42065973 Msa0812140:intron
TGTGGTTTGGCTGCATCACT+GGG 0.515656 5_3:-42065813 Msa0812140:CDS
TTCTATAAAAGATAGCATCT+TGG 0.526928 5_3:-42065850 Msa0812140:CDS
GAGCAGTTCAAACTTATGGT+TGG 0.536131 5_3:-42063473 Msa0812140:CDS
TAATAGAATCACCCGCCGCT+TGG 0.540293 5_3:+42065898 None:intergenic
GCATCACTGGGATCATTTCA+GGG 0.547289 5_3:-42065801 Msa0812140:intron
AATACTTCTGACCATTGTGA+TGG 0.548904 5_3:+42065578 None:intergenic
GAGTGGAGAATCGCACAACC+TGG 0.549381 5_3:+42067442 None:intergenic
TCTATAGTTACAGGCTTACA+GGG 0.552556 5_3:-42063180 Msa0812140:three_prime_UTR
CCTAACAAGGACCAAGCGGC+GGG 0.555344 5_3:-42065909 Msa0812140:CDS
TATACCATTCATGGTTACAA+TGG 0.564761 5_3:+42063142 None:intergenic
ATTTAAACTTCCAAGAGTTG+TGG 0.568256 5_3:+42063349 None:intergenic
GACTGCTGCATTAAAGTGTG+AGG 0.576828 5_3:-42063507 Msa0812140:CDS
GAGAGCGCAGAGAGAGACAA+AGG 0.579319 5_3:+42067467 None:intergenic
ACCATTCATGGTTACAATGG+AGG 0.580680 5_3:+42063145 None:intergenic
ATGTAACTACACCATATGCT+AGG 0.583964 5_3:+42063245 None:intergenic
AGAAAATGCTGCTATCTCCT+GGG 0.591464 5_3:-42062875 Msa0812140:three_prime_UTR
CTCGCACACATACATTGCCC+AGG 0.603017 5_3:+42062858 None:intergenic
CAAGCAAATTAAACACAACT+GGG 0.605699 5_3:+42065547 None:intergenic
AGAAGCGAACAAACCTGGAG+TGG 0.606943 5_3:+42067425 None:intergenic
TCCTAACAAGGACCAAGCGG+CGG 0.612927 5_3:-42065910 Msa0812140:CDS
AAACAGATACATGGTGATGG+AGG 0.614082 5_3:-42065943 Msa0812140:CDS
CATTCTAGTACAGACAGACA+TGG 0.626237 5_3:-42063111 Msa0812140:three_prime_UTR
TTACAGGCTTACAGGGGACA+TGG 0.637149 5_3:-42063173 Msa0812140:three_prime_UTR
TGGTGATCGATTATCAGCTG+AGG 0.675265 5_3:-42063453 Msa0812140:CDS
GAATCCTAACAAGGACCAAG+CGG 0.677581 5_3:-42065913 Msa0812140:CDS
AGTATGGGCTTCCATCACAA+TGG 0.688002 5_3:-42065589 Msa0812140:CDS
CTATAGTTACAGGCTTACAG+GGG 0.739906 5_3:-42063179 Msa0812140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACAATTTGTTTAAATTT+CGG - chr5_3:42063334-42063353 Msa0812140:three_prime_UTR 10.0%
!!! ATTTTATGTTTTTTTAATAG+GGG - chr5_3:42063642-42063661 Msa0812140:intron 10.0%
!!! ACTATTATTTTTATCATTTT+GGG - chr5_3:42063671-42063690 Msa0812140:intron 10.0%
!!! TATTTTGTATAATGTTTATT+TGG + chr5_3:42065138-42065157 None:intergenic 10.0%
!! CGAATAAAATAAATCTAAAA+AGG + chr5_3:42062951-42062970 None:intergenic 15.0%
!!! ATCTTGATTTGTTTTAAAAT+CGG + chr5_3:42063000-42063019 None:intergenic 15.0%
!!! TAACAATTTGTTTAAATTTC+GGG - chr5_3:42063335-42063354 Msa0812140:three_prime_UTR 15.0%
!!! CTAAATATTAAAAAAGTGTA+TGG + chr5_3:42063466-42063485 None:intergenic 15.0%
!!! GACTATTATTTTTATCATTT+TGG - chr5_3:42063670-42063689 Msa0812140:intron 15.0%
!!! CTATTATTTTTATCATTTTG+GGG - chr5_3:42063672-42063691 Msa0812140:intron 15.0%
!!! TATTATTTTTATCATTTTGG+GGG - chr5_3:42063673-42063692 Msa0812140:intron 15.0%
!! AGTATATTAATCATAAGTAT+TGG + chr5_3:42063853-42063872 None:intergenic 15.0%
!!! TAATTTGAAAACTTTGATTT+TGG - chr5_3:42064305-42064324 Msa0812140:intron 15.0%
!!! AATTTGAAAACTTTGATTTT+GGG - chr5_3:42064306-42064325 Msa0812140:intron 15.0%
!! TTATACAAAATATGAAATGA+AGG - chr5_3:42065146-42065165 Msa0812140:intron 15.0%
!! AAAAGTCTATATGTATAAAT+AGG + chr5_3:42065684-42065703 None:intergenic 15.0%
!!! GAAATAATTTAAAATCAGAT+AGG + chr5_3:42066085-42066104 None:intergenic 15.0%
!! TATTAATTGAAAAGTAAGAA+AGG + chr5_3:42066531-42066550 None:intergenic 15.0%
!! AATAGAGTAAAGATTCAATT+AGG - chr5_3:42063032-42063051 Msa0812140:three_prime_UTR 20.0%
!!! GGATTTATTTTTCATTGAAT+TGG + chr5_3:42063080-42063099 None:intergenic 20.0%
!!! ACATTTTCAATGACTAATTT+TGG - chr5_3:42063118-42063137 Msa0812140:three_prime_UTR 20.0%
!!! CATTTTCAATGACTAATTTT+GGG - chr5_3:42063119-42063138 Msa0812140:three_prime_UTR 20.0%
!! TATTTAATATGTATAGACTG+TGG - chr5_3:42064198-42064217 Msa0812140:intron 20.0%
!!! TTTGATAATTTTCTCACTTT+TGG - chr5_3:42064609-42064628 Msa0812140:intron 20.0%
!!! TTGATAATTTTCTCACTTTT+GGG - chr5_3:42064610-42064629 Msa0812140:intron 20.0%
!!! TTTAATTTGCTTGATTTATC+TGG - chr5_3:42064762-42064781 Msa0812140:intron 20.0%
!! TTATTCCAATATTGTCATAA+AGG + chr5_3:42064846-42064865 None:intergenic 20.0%
!! ATATTGGAATAACAGAAAAA+AGG - chr5_3:42064854-42064873 Msa0812140:intron 20.0%
!! TATTGGAATAACAGAAAAAA+GGG - chr5_3:42064855-42064874 Msa0812140:intron 20.0%
!! AAAAGAAAATTGAGAAATTC+TGG - chr5_3:42064902-42064921 Msa0812140:intron 20.0%
!!! ATATTGGTTATGAAATATGA+AGG + chr5_3:42065428-42065447 None:intergenic 20.0%
!! TATTTCTTATACCAAAAGAA+AGG + chr5_3:42065484-42065503 None:intergenic 20.0%
!! AAAATTAAAAATTCTCCTCA+TGG - chr5_3:42065836-42065855 Msa0812140:CDS 20.0%
!!! AAGTTGGTTGAAATAAAATT+TGG + chr5_3:42065887-42065906 None:intergenic 20.0%
!!! CCAAAAATAATCTTGTTTTT+GGG + chr5_3:42066140-42066159 None:intergenic 20.0%
!! AAATTGATAAAACAGAGAAA+AGG + chr5_3:42066652-42066671 None:intergenic 20.0%
!! TTATTCGTGTAGATTTTCTT+TGG - chr5_3:42062964-42062983 Msa0812140:three_prime_UTR 25.0%
!!! AAATCCAAGGTTTTAAATGA+AGG + chr5_3:42063273-42063292 None:intergenic 25.0%
!! GTTTGTTCTGATTGTAATTT+TGG - chr5_3:42063383-42063402 Msa0812140:exon 25.0%
!! TAATATTTAGTTGATACACC+AGG - chr5_3:42063476-42063495 Msa0812140:CDS 25.0%
!!! TTATGTTTTTTTAATAGGGG+AGG - chr5_3:42063645-42063664 Msa0812140:intron 25.0%
!! GATGCTATCTTTTATAGAAT+TGG + chr5_3:42064448-42064467 Msa0812150:CDS 25.0%
! TTCTATAAAAGATAGCATCT+TGG - chr5_3:42064449-42064468 Msa0812140:intron 25.0%
! TGAGAAAATTACTAAACAGA+AGG + chr5_3:42064568-42064587 None:intergenic 25.0%
!! AGAAGAGTATGAAAAAGTAT+GGG - chr5_3:42064695-42064714 Msa0812140:intron 25.0%
! AAAGGAATTCACAACAAAAA+AGG + chr5_3:42064828-42064847 None:intergenic 25.0%
! GAATTCCTTTATGACAATAT+TGG - chr5_3:42064838-42064857 Msa0812140:intron 25.0%
! ATTGGAATAACAGAAAAAAG+GGG - chr5_3:42064856-42064875 Msa0812140:intron 25.0%
!! TGTGTTAGATACTATTTTCA+TGG - chr5_3:42064879-42064898 Msa0812140:intron 25.0%
!! ATACTGGTTATGAAATATGA+AGG + chr5_3:42065071-42065090 None:intergenic 25.0%
! TTAAAGAAAAGTCTATCTCA+GGG + chr5_3:42065219-42065238 None:intergenic 25.0%
! ATTAAAGAAAAGTCTATCTC+AGG + chr5_3:42065220-42065239 None:intergenic 25.0%
!! TGAGATAGACTTTTCTTTAA+TGG - chr5_3:42065219-42065238 Msa0812140:intron 25.0%
! TATTTCTCTATAGTCTATCT+CGG + chr5_3:42065248-42065267 None:intergenic 25.0%
!!! TTTTGAGAAATCTATATACC+AGG + chr5_3:42065304-42065323 None:intergenic 25.0%
! AAAAAAGTCCTGTTATATAG+AGG - chr5_3:42065321-42065340 Msa0812140:intron 25.0%
! TTCTATTACCTCTATATAAC+AGG + chr5_3:42065332-42065351 None:intergenic 25.0%
! TAAGAAATAATTCCCAAAAC+CGG - chr5_3:42065495-42065514 Msa0812140:intron 25.0%
! TGAGAAATGATAAAGAGAAT+AGG - chr5_3:42065557-42065576 Msa0812140:CDS 25.0%
!!! AATAATCTTGTTTTTGGGAA+AGG + chr5_3:42066135-42066154 None:intergenic 25.0%
!! CCCAAAAACAAGATTATTTT+TGG - chr5_3:42066137-42066156 Msa0812140:intron 25.0%
!!! GCCAAAAATAATCTTGTTTT+TGG + chr5_3:42066141-42066160 None:intergenic 25.0%
!! ATGATCAACACTATGTTTTT+AGG - chr5_3:42066332-42066351 Msa0812140:intron 25.0%
!!! TTTTTAGGTTACAACAATTC+AGG - chr5_3:42066347-42066366 Msa0812140:intron 25.0%
!!! TGAAATTTTTGGCAGAAAAT+TGG - chr5_3:42066439-42066458 Msa0812140:intron 25.0%
! GTAATATGCAAAACATGATA+AGG + chr5_3:42066581-42066600 None:intergenic 25.0%
!! CTAATGTACTATAGTCTTAA+TGG - chr5_3:42067246-42067265 Msa0812140:intron 25.0%
!! TGCTTTGGATTTTCTGTATT+TGG - chr5_3:42062913-42062932 Msa0812140:three_prime_UTR 30.0%
TGTCATAGACTAGACTAATT+TGG + chr5_3:42063101-42063120 None:intergenic 30.0%
!!! ATTTTGGTGTTTACTTTGTC+TGG - chr5_3:42063399-42063418 Msa0812140:exon 30.0%
!! ATTTTTATCATTTTGGGGGT+TGG - chr5_3:42063677-42063696 Msa0812140:intron 30.0%
!! TTTTTATCATTTTGGGGGTT+GGG - chr5_3:42063678-42063697 Msa0812140:intron 30.0%
GATGAGACAATAAATTCCTA+AGG - chr5_3:42063709-42063728 Msa0812140:intron 30.0%
!! TAAATTCCTAAGGCTTTGTT+TGG - chr5_3:42063719-42063738 Msa0812140:intron 30.0%
!! AAATTCCTAAGGCTTTGTTT+GGG - chr5_3:42063720-42063739 Msa0812140:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr5_3:42063955-42063974 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr5_3:42063956-42063975 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr5_3:42063957-42063976 None:intergenic 30.0%
ATAAAAAATCCCCCTCATTT+GGG + chr5_3:42063979-42063998 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG + chr5_3:42063980-42063999 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr5_3:42064037-42064056 None:intergenic 30.0%
CTTTACTTAATCAAGATCGT+TGG + chr5_3:42064247-42064266 Msa0812150:CDS 30.0%
!!! AAACTTTGATTTTGGGTTCT+AGG - chr5_3:42064313-42064332 Msa0812140:intron 30.0%
! GGTTTTTATGAATCCTAACA+AGG - chr5_3:42064377-42064396 Msa0812140:intron 30.0%
! ATAGCATCTTGGTGAATTTT+GGG - chr5_3:42064460-42064479 Msa0812140:intron 30.0%
CTAAACAGAAGGAAAACAAT+AGG + chr5_3:42064557-42064576 None:intergenic 30.0%
!! TAATTTTCTCACTTTTGGGT+CGG - chr5_3:42064614-42064633 Msa0812140:intron 30.0%
! GAGAAGAGTATGAAAAAGTA+TGG - chr5_3:42064694-42064713 Msa0812140:intron 30.0%
CAAGCAAATTAAACACAACT+GGG + chr5_3:42064755-42064774 None:intergenic 30.0%
TCAAGCAAATTAAACACAAC+TGG + chr5_3:42064756-42064775 None:intergenic 30.0%
CAAAAAAGGAAGGAGAAAAA+AGG + chr5_3:42064814-42064833 None:intergenic 30.0%
GAATTCACAACAAAAAAGGA+AGG + chr5_3:42064824-42064843 None:intergenic 30.0%
! TTCTGTTTCTTCTACATAAC+AGG + chr5_3:42064969-42064988 None:intergenic 30.0%
TTAATGATAACCCAAGATGA+GGG + chr5_3:42065100-42065119 None:intergenic 30.0%
TCATCTTGGGTTATCATTAA+CGG - chr5_3:42065100-42065119 Msa0812140:intron 30.0%
TTTACTATTACTCACGCTAT+CGG + chr5_3:42065188-42065207 None:intergenic 30.0%
ATAGCGTGAGTAATAGTAAA+TGG - chr5_3:42065188-42065207 Msa0812140:intron 30.0%
TAGCGTGAGTAATAGTAAAT+GGG - chr5_3:42065189-42065208 Msa0812140:intron 30.0%
ATTTCTCTATAGTCTATCTC+GGG + chr5_3:42065247-42065266 None:intergenic 30.0%
AAGAAATAATTCCCAAAACC+GGG - chr5_3:42065496-42065515 Msa0812140:intron 30.0%
TAAGAGTTGTTAGTTAGTTG+AGG + chr5_3:42065712-42065731 None:intergenic 30.0%
AGTAATAGATTTCAACCTTG+AGG + chr5_3:42065785-42065804 None:intergenic 30.0%
TCGTTTCTCTGTAATAATGA+TGG - chr5_3:42066290-42066309 Msa0812140:intron 30.0%
!! TTGATCATTCTTTTTAGCGA+TGG + chr5_3:42066320-42066339 None:intergenic 30.0%
ACTAATAGATGACATGACTT+TGG - chr5_3:42066390-42066409 Msa0812140:intron 30.0%
TGGTTCATAGTAGTTTGATA+TGG - chr5_3:42066459-42066478 Msa0812140:intron 30.0%
CATAGTAGTTTGATATGGTT+TGG - chr5_3:42066464-42066483 Msa0812140:intron 30.0%
!! TAGTTTGATATGGTTTGGTA+GGG - chr5_3:42066469-42066488 Msa0812140:intron 30.0%
TATCAATTTGATCTTGCCAT+TGG - chr5_3:42066663-42066682 Msa0812140:intron 30.0%
AAAAGATGGTATCATGCATA+TGG + chr5_3:42066689-42066708 None:intergenic 30.0%
! CAAAGGTACAATTTCATATC+AGG + chr5_3:42066747-42066766 None:intergenic 30.0%
CTGATATGAAATTGTACCTT+TGG - chr5_3:42066745-42066764 Msa0812140:intron 30.0%
ATTTGAGCAGTTCAAACTTA+TGG - chr5_3:42066822-42066841 Msa0812140:intron 30.0%
ATTTAAACTTCCAAGAGTTG+TGG + chr5_3:42066953-42066972 None:intergenic 30.0%
! ATTGTAGTTTTCCTAGCATA+TGG - chr5_3:42067043-42067062 Msa0812140:intron 30.0%
!! TGAAATTTTAAGCTTGCTCA+TGG + chr5_3:42067086-42067105 None:intergenic 30.0%
TCAAGACTATCTATAGTTAC+AGG - chr5_3:42067110-42067129 Msa0812140:intron 30.0%
TATACCATTCATGGTTACAA+TGG + chr5_3:42067160-42067179 None:intergenic 30.0%
! GCATTTTCTGAATAACAGTA+TGG + chr5_3:42067316-42067335 None:intergenic 30.0%
! AATGCTTGAAACATTTTGAG+TGG - chr5_3:42067331-42067350 Msa0812140:intron 30.0%
CTTTACTTGCTCAATTGCTT+TGG - chr5_3:42062898-42062917 Msa0812140:three_prime_UTR 35.0%
! TCGTGTAGATTTTCTTTGGT+TGG - chr5_3:42062968-42062987 Msa0812140:three_prime_UTR 35.0%
ACATTGGTCGCATTTCTTAT+GGG + chr5_3:42063165-42063184 None:intergenic 35.0%
!!! CCAAGGTTTTAAATGAAGGT+TGG + chr5_3:42063269-42063288 None:intergenic 35.0%
! CCAACCTTCATTTAAAACCT+TGG - chr5_3:42063266-42063285 Msa0812140:three_prime_UTR 35.0%
AGCATTGTAGCATAAATCCA+AGG + chr5_3:42063286-42063305 None:intergenic 35.0%
TTTAAATTTCGGGCTATTGC+TGG - chr5_3:42063345-42063364 Msa0812140:three_prime_UTR 35.0%
! GTGTTTACTTTGTCTGGTTT+GGG - chr5_3:42063405-42063424 Msa0812140:CDS 35.0%
! TGTTTACTTTGTCTGGTTTG+GGG - chr5_3:42063406-42063425 Msa0812140:CDS 35.0%
!! TGGGGGTATTCTAAGTAATT+AGG - chr5_3:42063424-42063443 Msa0812140:CDS 35.0%
!!! TGTTTTTTTAATAGGGGAGG+AGG - chr5_3:42063648-42063667 Msa0812140:intron 35.0%
!! TTTTATCATTTTGGGGGTTG+GGG - chr5_3:42063679-42063698 Msa0812140:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG + chr5_3:42063951-42063970 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG + chr5_3:42063958-42063977 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+GGG + chr5_3:42063978-42063997 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr5_3:42064034-42064053 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr5_3:42064038-42064057 None:intergenic 35.0%
!!! TGATTTTGGGTTCTAGGAAA+AGG - chr5_3:42064319-42064338 Msa0812140:intron 35.0%
!!! GATTTTGGGTTCTAGGAAAA+GGG - chr5_3:42064320-42064339 Msa0812140:intron 35.0%
GGTGTTCAAAAACAGATACA+TGG - chr5_3:42064347-42064366 Msa0812140:intron 35.0%
CAAAAACAGATACATGGTGA+TGG - chr5_3:42064353-42064372 Msa0812140:intron 35.0%
! GATAGCATCTTGGTGAATTT+TGG - chr5_3:42064459-42064478 Msa0812140:intron 35.0%
! TAGCATCTTGGTGAATTTTG+GGG - chr5_3:42064461-42064480 Msa0812140:intron 35.0%
ATGATGCACACATTAGTGAT+TGG + chr5_3:42064663-42064682 None:intergenic 35.0%
TCACTAATGTGTGCATCATT+AGG - chr5_3:42064664-42064683 Msa0812140:intron 35.0%
CACTAATGTGTGCATCATTA+GGG - chr5_3:42064665-42064684 Msa0812140:intron 35.0%
AATACTTCTGACCATTGTGA+TGG + chr5_3:42064724-42064743 None:intergenic 35.0%
! ATCACAATGGTCAGAAGTAT+TGG - chr5_3:42064723-42064742 Msa0812140:intron 35.0%
TAAGAGCAAATACTGCATGT+TGG - chr5_3:42064785-42064804 Msa0812140:intron 35.0%
TAGATCAGGATAACAAGCAT+CGG + chr5_3:42065015-42065034 None:intergenic 35.0%
TTGCAAATGAGTGATAGATC+AGG + chr5_3:42065029-42065048 None:intergenic 35.0%
TAATGATAACCCAAGATGAG+GGG + chr5_3:42065099-42065118 None:intergenic 35.0%
GTTAATGATAACCCAAGATG+AGG + chr5_3:42065101-42065120 None:intergenic 35.0%
TTTCTCTATAGTCTATCTCG+GGG + chr5_3:42065246-42065265 None:intergenic 35.0%
TCTCTGTAATCATAAAGTCC+TGG - chr5_3:42065283-42065302 Msa0812140:intron 35.0%
GAATGATAGATTCAAGTGAC+AGG + chr5_3:42065388-42065407 None:intergenic 35.0%
TATGAAGGCTTTCAATTGTG+TGG + chr5_3:42065413-42065432 None:intergenic 35.0%
CCAACAATAATCCACAATGA+GGG + chr5_3:42065456-42065475 None:intergenic 35.0%
! CCTCATTGTGGATTATTGTT+GGG - chr5_3:42065454-42065473 Msa0812140:intron 35.0%
TGAGGTATACTGCTATTGAA+AGG - chr5_3:42065533-42065552 Msa0812140:intron 35.0%
AGTAGTGACTCTATTGTGAA+GGG + chr5_3:42065608-42065627 None:intergenic 35.0%
!! TTGAGGATAAGGTTGTTTTG+CGG + chr5_3:42065768-42065787 None:intergenic 35.0%
AGATTTCAACCTTGAGGATA+AGG + chr5_3:42065779-42065798 None:intergenic 35.0%
TTACTGTCTTCTTGTTCCAT+TGG - chr5_3:42065800-42065819 Msa0812140:intron 35.0%
TACTGTCTTCTTGTTCCATT+GGG - chr5_3:42065801-42065820 Msa0812140:intron 35.0%
!!! TTTTTTTTCTCTGCACCCAA+TGG + chr5_3:42065819-42065838 None:intergenic 35.0%
GCAACAATGCTGAAAAAACA+AGG + chr5_3:42066057-42066076 None:intergenic 35.0%
!!! TGTTTTTGGGAAAGGAAGTT+AGG + chr5_3:42066127-42066146 None:intergenic 35.0%
GGCAAAGAGAACATTTATGA+AGG + chr5_3:42066169-42066188 None:intergenic 35.0%
!! GTAGTTTGATATGGTTTGGT+AGG - chr5_3:42066468-42066487 Msa0812140:intron 35.0%
TCAGAGTTTCATTCAGATGA+TGG + chr5_3:42066629-42066648 None:intergenic 35.0%
TCTCTGAGTGAAAGAAAAGA+TGG + chr5_3:42066703-42066722 None:intergenic 35.0%
! TGAAATTGTACCTTTGGTTC+AGG - chr5_3:42066751-42066770 Msa0812140:intron 35.0%
CTGTAAATTTCCTGAACCAA+AGG + chr5_3:42066764-42066783 None:intergenic 35.0%
! CTTTGGTTCAGGAAATTTAC+AGG - chr5_3:42066762-42066781 Msa0812140:intron 35.0%
! TCTTGCTAAGATCGAAGTTT+TGG - chr5_3:42066891-42066910 Msa0812140:intron 35.0%
GTCTGTGTTCAATCACAAAT+TGG - chr5_3:42066927-42066946 Msa0812140:intron 35.0%
ATGTAACTACACCATATGCT+AGG + chr5_3:42067057-42067076 None:intergenic 35.0%
ATCTATAGTTACAGGCTTAC+AGG - chr5_3:42067118-42067137 Msa0812140:intron 35.0%
TCTATAGTTACAGGCTTACA+GGG - chr5_3:42067119-42067138 Msa0812140:intron 35.0%
!! CTTGCTTCAATTTGTTAGTC+AGG + chr5_3:42067226-42067245 None:intergenic 35.0%
AAAGTAGAAGCGAACAAACC+TGG + chr5_3:42062882-42062901 None:intergenic 40.0%
CACATTGGTCGCATTTCTTA+TGG + chr5_3:42063166-42063185 None:intergenic 40.0%
GGTGTTTACTTTGTCTGGTT+TGG - chr5_3:42063404-42063423 Msa0812140:CDS 40.0%
!! GTTTACTTTGTCTGGTTTGG+GGG - chr5_3:42063407-42063426 Msa0812140:CDS 40.0%
!! TTTATCATTTTGGGGGTTGG+GGG - chr5_3:42063680-42063699 Msa0812140:intron 40.0%
AAACTCCCAAACAAAGCCTT+AGG + chr5_3:42063728-42063747 None:intergenic 40.0%
CTCAAAAATTGTATTGGGGG+AGG + chr5_3:42063952-42063971 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG - chr5_3:42063964-42063983 Msa0812140:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG - chr5_3:42063965-42063984 Msa0812140:intron 40.0%
AAAAAATCCCCCTCATTTGG+GGG + chr5_3:42063977-42063996 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG + chr5_3:42064066-42064085 None:intergenic 40.0%
!!! AAGGGAGGGTTTTGGAAAAA+AGG + chr5_3:42064070-42064089 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr5_3:42064103-42064122 None:intergenic 40.0%
!! TCTCCACTTAGGCTTTGTTT+GGG + chr5_3:42064110-42064129 None:intergenic 40.0%
!! ATCTCCACTTAGGCTTTGTT+TGG + chr5_3:42064111-42064130 None:intergenic 40.0%
AACCACTTCATTAGCACACA+TGG - chr5_3:42064162-42064181 Msa0812140:intron 40.0%
ATCCATGTGTGCTAATGAAG+TGG + chr5_3:42064167-42064186 None:intergenic 40.0%
!! AAACAGATACATGGTGATGG+AGG - chr5_3:42064356-42064375 Msa0812140:intron 40.0%
GAAATGAAGGTCAACACATC+AGG - chr5_3:42065159-42065178 Msa0812140:intron 40.0%
AGTGACAGGATGATAAGCAT+TGG + chr5_3:42065374-42065393 None:intergenic 40.0%
CACAATGAGGGAACGAATAT+TGG + chr5_3:42065444-42065463 None:intergenic 40.0%
CAATATTCGTTCCCTCATTG+TGG - chr5_3:42065442-42065461 Msa0812140:intron 40.0%
! CCCTCATTGTGGATTATTGT+TGG - chr5_3:42065453-42065472 Msa0812140:intron 40.0%
CCCAACAATAATCCACAATG+AGG + chr5_3:42065457-42065476 None:intergenic 40.0%
! TGTTGGGAACACCTTTCTTT+TGG - chr5_3:42065470-42065489 Msa0812140:intron 40.0%
! TATCAATTCTGCCCGGTTTT+GGG + chr5_3:42065510-42065529 None:intergenic 40.0%
CTCATTCTATCAATTCTGCC+CGG + chr5_3:42065517-42065536 None:intergenic 40.0%
TATTGTGAAGGGAAAACCCT+TGG + chr5_3:42065597-42065616 None:intergenic 40.0%
GAGTAGTGACTCTATTGTGA+AGG + chr5_3:42065609-42065628 None:intergenic 40.0%
GCAAAACAACCTTATCCTCA+AGG - chr5_3:42065767-42065786 Msa0812140:intron 40.0%
CAGTGCATAATTGCAGAAGT+TGG + chr5_3:42066022-42066041 None:intergenic 40.0%
!! AGGTGATGGGTCTAATTCAA+TGG + chr5_3:42066107-42066126 None:intergenic 40.0%
ACAACCTTCTCCAAAGATCT+TGG + chr5_3:42066198-42066217 None:intergenic 40.0%
ACTGCAAAATGGCAAGTTAG+AGG + chr5_3:42066222-42066241 None:intergenic 40.0%
ACCTTGTTGGAACTGCAAAA+TGG + chr5_3:42066233-42066252 None:intergenic 40.0%
CACAAAGCTTCCTATGAAGA+GGG - chr5_3:42066413-42066432 Msa0812140:intron 40.0%
ACAAAGCTTCCTATGAAGAG+GGG - chr5_3:42066414-42066433 Msa0812140:intron 40.0%
AATTTCATCCCCCTCTTCAT+AGG + chr5_3:42066426-42066445 None:intergenic 40.0%
! GAAGAGGGGGATGAAATTTT+TGG - chr5_3:42066428-42066447 Msa0812140:intron 40.0%
CATGATAAGGTGATGCATCA+AGG + chr5_3:42066568-42066587 None:intergenic 40.0%
GAGCAGTTCAAACTTATGGT+TGG - chr5_3:42066826-42066845 Msa0812140:intron 40.0%
CTATAGTTACAGGCTTACAG+GGG - chr5_3:42067120-42067139 Msa0812140:intron 40.0%
ACCTCCATTGTAACCATGAA+TGG - chr5_3:42067153-42067172 Msa0812140:intron 40.0%
ACCATTCATGGTTACAATGG+AGG + chr5_3:42067157-42067176 None:intergenic 40.0%
GATGGAGCTTATACCATTCA+TGG + chr5_3:42067169-42067188 None:intergenic 40.0%
GTCTGTCTGTACTAGAATGA+TGG + chr5_3:42067187-42067206 None:intergenic 40.0%
CATTCTAGTACAGACAGACA+TGG - chr5_3:42067188-42067207 Msa0812140:intron 40.0%
TAGAAAATGCTGCTATCTCC+TGG - chr5_3:42067423-42067442 Msa0812140:intron 40.0%
AGAAAATGCTGCTATCTCCT+GGG - chr5_3:42067424-42067443 Msa0812140:intron 40.0%
! GGTCCCTTGAAATTTTCTCG+CGG - chr5_3:42063053-42063072 Msa0812140:three_prime_UTR 45.0%
GGACCGCGAGAAAATTTCAA+GGG + chr5_3:42063059-42063078 None:intergenic 45.0%
TGGACCGCGAGAAAATTTCA+AGG + chr5_3:42063060-42063079 None:intergenic 45.0%
TAGTTGAGGTCGCATCACAT+TGG + chr5_3:42063181-42063200 None:intergenic 45.0%
ATGTGATGCGACCTCAACTA+TGG - chr5_3:42063181-42063200 Msa0812140:three_prime_UTR 45.0%
! AGGTTGGTTAGCTGCAATGT+AGG + chr5_3:42063253-42063272 None:intergenic 45.0%
! AGTTGATACACCAGGAACAG+TGG - chr5_3:42063484-42063503 Msa0812140:CDS 45.0%
TGTTTGCAGATTTGCGACTG+TGG + chr5_3:42063557-42063576 None:intergenic 45.0%
GCTGTCTCTTCACTACACTA+CGG + chr5_3:42063580-42063599 None:intergenic 45.0%
GTAGTGTAGTGAAGAGACAG+CGG - chr5_3:42063579-42063598 Msa0812140:intron 45.0%
!! GCTTTGTTTGGGAGTTTCGA+GGG - chr5_3:42063731-42063750 Msa0812140:intron 45.0%
! CTTTGTTTGGGAGTTTCGAG+GGG - chr5_3:42063732-42063751 Msa0812140:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG + chr5_3:42063944-42063963 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG + chr5_3:42063945-42063964 None:intergenic 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG - chr5_3:42063966-42063985 Msa0812140:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr5_3:42064028-42064047 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr5_3:42064029-42064048 None:intergenic 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG + chr5_3:42064057-42064076 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr5_3:42064098-42064117 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr5_3:42064099-42064118 None:intergenic 45.0%
ACTCCCAAACAAAGCCTAAG+TGG - chr5_3:42064104-42064123 Msa0812140:intron 45.0%
TCGAGTTCGAATCTCCACTT+AGG + chr5_3:42064121-42064140 None:intergenic 45.0%
GAATCCTAACAAGGACCAAG+CGG - chr5_3:42064386-42064405 Msa0812140:intron 45.0%
!! TTGGTGAATTTTGGGGAGTG+TGG - chr5_3:42064468-42064487 Msa0812140:intron 45.0%
!! GAATTTTGGGGAGTGTGGTT+TGG - chr5_3:42064473-42064492 Msa0812140:intron 45.0%
TGCATCACTGGGATCATTTC+AGG - chr5_3:42064497-42064516 Msa0812140:intron 45.0%
GCATCACTGGGATCATTTCA+GGG - chr5_3:42064498-42064517 Msa0812140:intron 45.0%
AGTATGGGCTTCCATCACAA+TGG - chr5_3:42064710-42064729 Msa0812140:intron 45.0%
AAGATGAGGGGACAACATAC+TGG + chr5_3:42065087-42065106 None:intergenic 45.0%
AGTATGTTGTCCCCTCATCT+TGG - chr5_3:42065086-42065105 Msa0812140:intron 45.0%
GTATGTTGTCCCCTCATCTT+GGG - chr5_3:42065087-42065106 Msa0812140:intron 45.0%
! CTATCAATTCTGCCCGGTTT+TGG + chr5_3:42065511-42065530 None:intergenic 45.0%
CGGGCAGAATTGATAGAATG+AGG - chr5_3:42065515-42065534 Msa0812140:intron 45.0%
AGGAGATAATCTCTCCTCCA+AGG - chr5_3:42065577-42065596 Msa0812140:CDS 45.0%
GGAGATAATCTCTCCTCCAA+GGG - chr5_3:42065578-42065597 Msa0812140:CDS 45.0%
CCTTCATTAGCAACAGCAGT+GGG + chr5_3:42065950-42065969 None:intergenic 45.0%
TCCTTCATTAGCAACAGCAG+TGG + chr5_3:42065951-42065970 None:intergenic 45.0%
GGGAAAGGAAGTTAGGTGAT+GGG + chr5_3:42066120-42066139 None:intergenic 45.0%
TGGGAAAGGAAGTTAGGTGA+TGG + chr5_3:42066121-42066140 None:intergenic 45.0%
! TGTGCCAAGATCTTTGGAGA+AGG - chr5_3:42066191-42066210 Msa0812140:intron 45.0%
!! GCCATTTTGCAGTTCCAACA+AGG - chr5_3:42066229-42066248 Msa0812140:intron 45.0%
TCTTGATCTGCTCCATGTCA+GGG - chr5_3:42066252-42066271 Msa0812140:intron 45.0%
GCACAAAGCTTCCTATGAAG+AGG - chr5_3:42066412-42066431 Msa0812140:intron 45.0%
CAAAGCTTCCTATGAAGAGG+GGG - chr5_3:42066415-42066434 Msa0812140:intron 45.0%
GGTATCATGCATATGGCCAA+TGG + chr5_3:42066682-42066701 None:intergenic 45.0%
GACTGCTGCATTAAAGTGTG+AGG - chr5_3:42066792-42066811 Msa0812140:intron 45.0%
TGGTGATCGATTATCAGCTG+AGG - chr5_3:42066846-42066865 Msa0812140:intron 45.0%
CACAAATTGGCCACAACTCT+TGG - chr5_3:42066940-42066959 Msa0812140:intron 45.0%
!!! TAATTTTATGTTTTTTTAAT+AGG - chr5_3:42063640-42063659 Msa0812140:intron 5.0%
!!! AATTTTATGTTTTTTTAATA+GGG - chr5_3:42063641-42063660 Msa0812140:intron 5.0%
AGAAGCGAACAAACCTGGAG+TGG + chr5_3:42062877-42062896 None:intergenic 50.0%
CTGTAACGCGACCATAGTTG+AGG + chr5_3:42063195-42063214 None:intergenic 50.0%
TCGCAGAGATATCGAGAACC+CGG - chr5_3:42063215-42063234 Msa0812140:three_prime_UTR 50.0%
ATGTAGGCCAAAACCTCCTC+CGG + chr5_3:42063237-42063256 None:intergenic 50.0%
TACACAGACTCCACTGTTCC+TGG + chr5_3:42063497-42063516 None:intergenic 50.0%
TAGTGAAGAGACAGCGGAGA+GGG - chr5_3:42063585-42063604 Msa0812140:intron 50.0%
!! GGCTTTGTTTGGGAGTTTCG+AGG - chr5_3:42063730-42063749 Msa0812140:intron 50.0%
TTTGGGAGTTTCGAGGGGAA+GGG - chr5_3:42063737-42063756 Msa0812140:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG + chr5_3:42063943-42063962 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+GGG - chr5_3:42063967-42063986 Msa0812140:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr5_3:42064100-42064119 None:intergenic 50.0%
!! GGGTTCTAGGAAAAGGGTGA+TGG - chr5_3:42064326-42064345 Msa0812140:intron 50.0%
TAATAGAATCACCCGCCGCT+TGG + chr5_3:42064404-42064423 Msa0812150:CDS 50.0%
! TGTGGTTTGGCTGCATCACT+GGG - chr5_3:42064486-42064505 Msa0812140:intron 50.0%
TGTGAAGGGAAAACCCTTGG+AGG + chr5_3:42065594-42065613 None:intergenic 50.0%
!! GTTGTTTTGCGGACGAGTGA+CGG + chr5_3:42065757-42065776 None:intergenic 50.0%
TTCGTCAAGCTCTCAGCAGT+CGG + chr5_3:42065864-42065883 None:intergenic 50.0%
CCCACTGCTGTTGCTAATGA+AGG - chr5_3:42065947-42065966 Msa0812140:CDS 50.0%
AATCATTCCCAAGCGCCACA+TGG - chr5_3:42065972-42065991 Msa0812140:intron 50.0%
ATCATTCCCAAGCGCCACAT+GGG - chr5_3:42065973-42065992 Msa0812140:intron 50.0%
AACTTTCCCATGTGGCGCTT+GGG + chr5_3:42065982-42066001 None:intergenic 50.0%
TCCAGCTGAACTTTCCCATG+TGG + chr5_3:42065990-42066009 None:intergenic 50.0%
CTCCAAAGATCTTGGCACAG+CGG + chr5_3:42066190-42066209 None:intergenic 50.0%
GGAGCAGATCAAGACCTTGT+TGG + chr5_3:42066246-42066265 None:intergenic 50.0%
GTCTTGATCTGCTCCATGTC+AGG - chr5_3:42066251-42066270 Msa0812140:intron 50.0%
TTACAGGCTTACAGGGGACA+TGG - chr5_3:42067126-42067145 Msa0812140:intron 50.0%
! GAGAGCGCAGAGAGAGACAA+AGG + chr5_3:42062835-42062854 None:intergenic 55.0%
GAGTGGAGAATCGCACAACC+TGG + chr5_3:42062860-42062879 None:intergenic 55.0%
GTTGTGCGATTCTCCACTCC+AGG - chr5_3:42062861-42062880 Msa0812140:three_prime_UTR 55.0%
CAGAGATATCGAGAACCCGG+AGG - chr5_3:42063218-42063237 Msa0812140:three_prime_UTR 55.0%
AGATATCGAGAACCCGGAGG+AGG - chr5_3:42063221-42063240 Msa0812140:three_prime_UTR 55.0%
TGTAGGCCAAAACCTCCTCC+GGG + chr5_3:42063236-42063255 None:intergenic 55.0%
GTAGTGAAGAGACAGCGGAG+AGG - chr5_3:42063584-42063603 Msa0812140:intron 55.0%
AGTGAAGAGACAGCGGAGAG+GGG - chr5_3:42063586-42063605 Msa0812140:intron 55.0%
!! TCATTTTGGGGGTTGGGGGT+TGG - chr5_3:42063684-42063703 Msa0812140:intron 55.0%
GTTTGGGAGTTTCGAGGGGA+AGG - chr5_3:42063736-42063755 Msa0812140:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG + chr5_3:42063931-42063950 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG + chr5_3:42063932-42063951 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG + chr5_3:42063941-42063960 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG + chr5_3:42063942-42063961 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr5_3:42064022-42064041 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr5_3:42064095-42064114 None:intergenic 55.0%
TCCTAACAAGGACCAAGCGG+CGG - chr5_3:42064389-42064408 Msa0812140:intron 55.0%
! GTGTGGTTTGGCTGCATCAC+TGG - chr5_3:42064485-42064504 Msa0812140:intron 55.0%
CGGACGAGTGACGGTGTAAT+GGG + chr5_3:42065748-42065767 None:intergenic 55.0%
! GGACGACTGGGATCTGAAGT+TGG + chr5_3:42065903-42065922 None:intergenic 55.0%
! GCAAGTGCTGCAGCAAACTG+CGG + chr5_3:42065924-42065943 None:intergenic 55.0%
GAACTTTCCCATGTGGCGCT+TGG + chr5_3:42065983-42066002 None:intergenic 55.0%
GCCACATGGGAAAGTTCAGC+TGG - chr5_3:42065986-42066005 Msa0812140:intron 55.0%
TGCCGCTGTGCCAAGATCTT+TGG - chr5_3:42066185-42066204 Msa0812140:intron 55.0%
CTCGCACACATACATTGCCC+AGG + chr5_3:42067444-42067463 None:intergenic 55.0%
! CGAGAACCCGGAGGAGGTTT+TGG - chr5_3:42063227-42063246 Msa0812140:three_prime_UTR 60.0%
CACAAACTGCTTCGCTGCGC+GGG + chr5_3:42063534-42063553 None:intergenic 60.0%
GCACAAACTGCTTCGCTGCG+CGG + chr5_3:42063535-42063554 None:intergenic 60.0%
GTGAAGAGACAGCGGAGAGG+GGG - chr5_3:42063587-42063606 Msa0812140:intron 60.0%
!! TTTTGGGGGTTGGGGGTTGG+TGG - chr5_3:42063687-42063706 Msa0812140:intron 60.0%
GGAGTTTCGAGGGGAAGGGA+GGG - chr5_3:42063741-42063760 Msa0812140:intron 60.0%
GAGTTTCGAGGGGAAGGGAG+GGG - chr5_3:42063742-42063761 Msa0812140:intron 60.0%
! GAAGGGAGGGGAGGGCTTTT+GGG - chr5_3:42063754-42063773 Msa0812140:intron 60.0%
! AAGGGAGGGGAGGGCTTTTG+GGG - chr5_3:42063755-42063774 Msa0812140:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG + chr5_3:42063935-42063954 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr5_3:42064019-42064038 None:intergenic 60.0%
GAGTTTGGAGGGGAGGCGAA+GGG + chr5_3:42064088-42064107 None:intergenic 60.0%
CCTAACAAGGACCAAGCGGC+GGG - chr5_3:42064390-42064409 Msa0812140:intron 60.0%
GCGGACGAGTGACGGTGTAA+TGG + chr5_3:42065749-42065768 None:intergenic 60.0%
! TCTCAGCAGTCGGCTCCATG+AGG + chr5_3:42065854-42065873 None:intergenic 60.0%
GCAGCAAACTGCGGACGACT+GGG + chr5_3:42065915-42065934 None:intergenic 60.0%
TGCAGCAAACTGCGGACGAC+TGG + chr5_3:42065916-42065935 None:intergenic 60.0%
CCTCAGCAGAGTCCCTGACA+TGG + chr5_3:42066267-42066286 None:intergenic 60.0%
CCATGTCAGGGACTCTGCTG+AGG - chr5_3:42066264-42066283 Msa0812140:intron 60.0%
CTCTCTCTGCGCTCTCGTCC+AGG - chr5_3:42062839-42062858 Msa0812140:three_prime_UTR 65.0%
GGGAGTTTCGAGGGGAAGGG+AGG - chr5_3:42063740-42063759 Msa0812140:intron 65.0%
TTTCGAGGGGAAGGGAGGGG+AGG - chr5_3:42063745-42063764 Msa0812140:intron 65.0%
TTCGAGGGGAAGGGAGGGGA+GGG - chr5_3:42063746-42063765 Msa0812140:intron 65.0%
! GGAAGGGAGGGGAGGGCTTT+TGG - chr5_3:42063753-42063772 Msa0812140:intron 65.0%
! AGGGAGGGGAGGGCTTTTGG+GGG - chr5_3:42063756-42063775 Msa0812140:intron 65.0%
!! AGGGGAGGGCTTTTGGGGGT+TGG - chr5_3:42063760-42063779 Msa0812140:intron 65.0%
! GGGAGGCGAAGGGAGGGTTT+TGG + chr5_3:42064078-42064097 None:intergenic 65.0%
TTGGAGGGGAGGCGAAGGGA+GGG + chr5_3:42064084-42064103 None:intergenic 65.0%
TTTGGAGGGGAGGCGAAGGG+AGG + chr5_3:42064085-42064104 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGCGA+AGG + chr5_3:42064089-42064108 None:intergenic 65.0%
CCCGCCGCTTGGTCCTTGTT+AGG + chr5_3:42064393-42064412 Msa0812150:CDS 65.0%
! CAGCGGAGAGGGGGTACGAG+TGG - chr5_3:42063596-42063615 Msa0812140:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 42062815 42067506 42062815 ID=Msa0812140;Name=Msa0812140
chr5_3 mRNA 42062815 42067506 42062815 ID=Msa0812140-mRNA-1;Parent=Msa0812140;Name=Msa0812140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78|1|1|1|0.33|0.5|4|585|153
chr5_3 exon 42062815 42063548 42062815 ID=Msa0812140-mRNA-1:exon:12906;Parent=Msa0812140-mRNA-1
chr5_3 exon 42065538 42065675 42065538 ID=Msa0812140-mRNA-1:exon:12905;Parent=Msa0812140-mRNA-1
chr5_3 exon 42065802 42065986 42065802 ID=Msa0812140-mRNA-1:exon:12904;Parent=Msa0812140-mRNA-1
chr5_3 exon 42067439 42067506 42067439 ID=Msa0812140-mRNA-1:exon:12903;Parent=Msa0812140-mRNA-1
chr5_3 five_prime_UTR 42067439 42067506 42067439 ID=Msa0812140-mRNA-1:five_prime_utr;Parent=Msa0812140-mRNA-1
chr5_3 five_prime_UTR 42065977 42065986 42065977 ID=Msa0812140-mRNA-1:five_prime_utr;Parent=Msa0812140-mRNA-1
chr5_3 CDS 42065802 42065976 42065802 ID=Msa0812140-mRNA-1:cds;Parent=Msa0812140-mRNA-1
chr5_3 CDS 42065538 42065675 42065538 ID=Msa0812140-mRNA-1:cds;Parent=Msa0812140-mRNA-1
chr5_3 CDS 42063400 42063548 42063400 ID=Msa0812140-mRNA-1:cds;Parent=Msa0812140-mRNA-1
chr5_3 three_prime_UTR 42062815 42063399 42062815 ID=Msa0812140-mRNA-1:three_prime_utr;Parent=Msa0812140-mRNA-1
Gene Sequence

>Msa0812140

ATGGTGTTCAAAAACAGATACATGGTGATGGAGGTTTTTATGAATCCTAACAAGGACCAAGCGGCGGGTGATTCTATTATAATTACGCAGTTTAATGTCTCCAATTCTATAAAAGATAGCATCTTGGTGAATTTTGGGGAGTGTGGTTTGGCTGCATCACTGGGATCATTTCAGGTCAAGTATGTGAATCCAATCACTAATGTGTGCATCATTAGGGCTTCAAGAGAAGAGTATGAAAAAGTATGGGCTTCCATCACAATGGTCAGAAGTATTGGAAATTTCCCAGTTGTGTTTAATTTGCTTGATTTATCTGGAAATTTACAGGCTACTAAGACTGCTGCATTAAAGTGTGAGGAAGCAAAATTTGAGCAGTTCAAACTTATGGTTGGTGATCGATTATCAGCTGAGGATACACATCGCATGAATAATCATCTTGCTAAGATCGAAGTTTTGGAGCATTGA

Protein sequence

>Msa0812140

MVFKNRYMVMEVFMNPNKDQAAGDSIIITQFNVSNSIKDSILVNFGECGLAASLGSFQVKYVNPITNVCIIRASREEYEKVWASITMVRSIGNFPVVFNLLDLSGNLQATKTAALKCEEAKFEQFKLMVGDRLSAEDTHRMNNHLAKIEVLEH*