AlfalfaGEDB | Msa0812140

M. sativa cultivar zhongmu-4 / Msa0812140

KEGG: K03537
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564
PFAM: PF01900.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812140	XP_003615482.1	99.346	153	1	0	1	153	1	153	2.72e-109	317

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812140	sp\|Q6AWV1\|POP5_ARATH	60.526	152	55	2	3	153	4	151	3.56e-64	196

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812140	G7K656	99.346	153	1	0	1	153	1	153	1.30e-109	317

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0812140	0.804096	2.545282e-49	-8.615850e-47
Msa0004860	Msa0812140	0.811817	5.790868e-51	-8.615850e-47
Msa0004920	Msa0812140	0.806829	6.803335e-50	-8.615850e-47
Msa0008090	Msa0812140	0.848667	5.295665e-60	-8.615850e-47
Msa0008410	Msa0812140	0.802630	5.122054e-49	-8.615850e-47
Msa0020390	Msa0812140	0.811487	6.830030e-51	-8.615850e-47
Msa0027260	Msa0812140	0.805826	1.106893e-49	-8.615850e-47
Msa0029260	Msa0812140	0.817242	3.650168e-52	-8.615850e-47
Msa0032260	Msa0812140	0.836684	8.102790e-57	-8.615850e-47
Msa0033880	Msa0812140	0.824163	9.368615e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812140	MtrunA17_Chr5g0428771	99.346	153	1	0	1	153	1	153	2.50e-113	317

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812140	AT1G04635.1	60.526	152	55	2	3	153	4	151	3.62e-65	196

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Find 53 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATACATGGTGATGG+AGG	0.614082	5_3:-42065943	Msa0812140:CDS
AATACTTCTGACCATTGTGA+TGG	0.548904	5_3:+42065578	None:intergenic
ACCATTCATGGTTACAATGG+AGG	0.580680	5_3:+42063145	None:intergenic
ACCTCCATTGTAACCATGAA+TGG	0.479248	5_3:-42063146	Msa0812140:three_prime_UTR
AGAAAATGCTGCTATCTCCT+GGG	0.591464	5_3:-42062875	Msa0812140:three_prime_UTR
AGAAGCGAACAAACCTGGAG+TGG	0.606943	5_3:+42067425	None:intergenic
AGTATGGGCTTCCATCACAA+TGG	0.688002	5_3:-42065589	Msa0812140:CDS
ATCACAATGGTCAGAAGTAT+TGG	0.427749	5_3:-42065576	Msa0812140:CDS
ATCTATAGTTACAGGCTTAC+AGG	0.265987	5_3:-42063181	Msa0812140:three_prime_UTR
ATGATGCACACATTAGTGAT+TGG	0.442861	5_3:+42065639	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTCATAGACTAGACTAATT+TGG	+	chr5_3:42063101-42063120	None:intergenic	30.0%
GATGAGACAATAAATTCCTA+AGG	-	chr5_3:42063709-42063728	Msa0812140:intron	30.0%
GAACTCAAAAATTGTATTGG+GGG	+	chr5_3:42063955-42063974	None:intergenic	30.0%
GGAACTCAAAAATTGTATTG+GGG	+	chr5_3:42063956-42063975	None:intergenic	30.0%
GGGAACTCAAAAATTGTATT+GGG	+	chr5_3:42063957-42063976	None:intergenic	30.0%
ATAAAAAATCCCCCTCATTT+GGG	+	chr5_3:42063979-42063998	None:intergenic	30.0%
AATAAAAAATCCCCCTCATT+TGG	+	chr5_3:42063980-42063999	None:intergenic	30.0%
TGGAAGAAATAGAAGACATT+GGG	+	chr5_3:42064037-42064056	None:intergenic	30.0%
CTTTACTTAATCAAGATCGT+TGG	+	chr5_3:42064247-42064266	Msa0812150:CDS	30.0%
CTAAACAGAAGGAAAACAAT+AGG	+	chr5_3:42064557-42064576	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	42062815	42067506	42062815	ID=Msa0812140;Name=Msa0812140
chr5_3	mRNA	42062815	42067506	42062815	ID=Msa0812140-mRNA-1;Parent=Msa0812140;Name=Msa0812140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78\|1\|1\|1\|0.33\|0.5\|4\|585\|153
chr5_3	exon	42062815	42063548	42062815	ID=Msa0812140-mRNA-1:exon:12906;Parent=Msa0812140-mRNA-1
chr5_3	exon	42065538	42065675	42065538	ID=Msa0812140-mRNA-1:exon:12905;Parent=Msa0812140-mRNA-1
chr5_3	exon	42065802	42065986	42065802	ID=Msa0812140-mRNA-1:exon:12904;Parent=Msa0812140-mRNA-1
chr5_3	exon	42067439	42067506	42067439	ID=Msa0812140-mRNA-1:exon:12903;Parent=Msa0812140-mRNA-1
chr5_3	five_prime_UTR	42067439	42067506	42067439	ID=Msa0812140-mRNA-1:five_prime_utr;Parent=Msa0812140-mRNA-1
chr5_3	five_prime_UTR	42065977	42065986	42065977	ID=Msa0812140-mRNA-1:five_prime_utr;Parent=Msa0812140-mRNA-1
chr5_3	CDS	42065802	42065976	42065802	ID=Msa0812140-mRNA-1:cds;Parent=Msa0812140-mRNA-1
chr5_3	CDS	42065538	42065675	42065538	ID=Msa0812140-mRNA-1:cds;Parent=Msa0812140-mRNA-1
chr5_3	CDS	42063400	42063548	42063400	ID=Msa0812140-mRNA-1:cds;Parent=Msa0812140-mRNA-1
chr5_3	three_prime_UTR	42062815	42063399	42062815	ID=Msa0812140-mRNA-1:three_prime_utr;Parent=Msa0812140-mRNA-1

Gene Sequence

>Msa0812140

ATGGTGTTCAAAAACAGATACATGGTGATGGAGGTTTTTATGAATCCTAACAAGGACCAAGCGGCGGGTGATTCTATTATAATTACGCAGTTTAATGTCTCCAATTCTATAAAAGATAGCATCTTGGTGAATTTTGGGGAGTGTGGTTTGGCTGCATCACTGGGATCATTTCAGGTCAAGTATGTGAATCCAATCACTAATGTGTGCATCATTAGGGCTTCAAGAGAAGAGTATGAAAAAGTATGGGCTTCCATCACAATGGTCAGAAGTATTGGAAATTTCCCAGTTGTGTTTAATTTGCTTGATTTATCTGGAAATTTACAGGCTACTAAGACTGCTGCATTAAAGTGTGAGGAAGCAAAATTTGAGCAGTTCAAACTTATGGTTGGTGATCGATTATCAGCTGAGGATACACATCGCATGAATAATCATCTTGCTAAGATCGAAGTTTTGGAGCATTGA

Protein sequence

>Msa0812140

MVFKNRYMVMEVFMNPNKDQAAGDSIIITQFNVSNSIKDSILVNFGECGLAASLGSFQVKYVNPITNVCIIRASREEYEKVWASITMVRSIGNFPVVFNLLDLSGNLQATKTAALKCEEAKFEQFKLMVGDRLSAEDTHRMNNHLAKIEVLEH*