AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1466300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466300 MtrunA17_Chr5g0442071 95.062 162 8 0 1 162 394 555 1.30e-106 315
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466300 AT3G49725.1 37.195 164 77 7 1 155 463 609 4.52e-15 72.0

Find 52 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCGTCATTTACCTTTAC+AGG 0.149736 tig0046504:+1937 Msa1466300:intergenic
GAAATTTGTTTGATAGAAAA+TGG 0.188433 tig0046504:-939 Msa1466300:CDS
CACACTATTGTCTTTATTAG+AGG 0.231278 tig0046504:+1107 Msa1466300:intergenic
TATGATTGAAGTTTGGAATA+AGG 0.269708 tig0046504:-1467 Msa1466300:exon
TTTCAAGTTCTTCAACAAAT+AGG 0.270796 tig0046504:-1514 Msa1466300:five_prime_UTR
CGTGCGGTGCTCTTCAAGAT+TGG 0.348509 tig0046504:+1529 Msa1466300:intergenic
AGTTGGTTTGCAAGAGTTGA+TGG 0.359571 tig0046504:-1025 Msa1466300:CDS
TTCAGAATATGATTGAAGTT+TGG 0.361209 tig0046504:-1474 Msa1466300:exon
ATCCACCACATGCTTCAAAA+AGG 0.363687 tig0046504:+1562 Msa1466300:intergenic
GATGAAACTAGTAGCATTGA+TGG 0.393644 tig0046504:-1267 Msa1466300:CDS
TATATCTGATTTACCTGTAA+AGG 0.397723 tig0046504:-1964 Msa1466300:five_prime_UTR
ATATGTAATATTTATTAGAC+TGG 0.426770 tig0046504:-745 Msa1466300:three_prime_UTR
GTGCGGTGCTCTTCAAGATT+GGG 0.429002 tig0046504:+1530 Msa1466300:intergenic
TATTAGAGGACTCAATTTGT+TGG 0.430824 tig0046504:+1121 Msa1466300:intergenic
TAGTCAGGATGAGAAATTGA+AGG 0.468706 tig0046504:-980 Msa1466300:CDS
TGATGCTGAAGAAGAGTTCA+CGG 0.493088 tig0046504:-1337 Msa1466300:CDS
TCCGTTAATGTATCAGTGCT+CGG 0.493838 tig0046504:+1234 Msa1466300:intergenic
AGATGAGAAACTGAGTAGTC+AGG 0.499034 tig0046504:-995 Msa1466300:CDS
AAGAAGACTATTCTGATGGT+TGG 0.500003 tig0046504:-1206 Msa1466300:CDS
TGTTGGTCAGCCGCAGATGA+AGG 0.500281 tig0046504:+1138 Msa1466300:intergenic
TGTTGACAAATAATATTGAC+AGG 0.505015 tig0046504:+1875 Msa1466300:intergenic
TCCGAGCACTGATACATTAA+CGG 0.506624 tig0046504:-1235 Msa1466300:CDS
ACATCTGCCATCACAGGAGT+TGG 0.511052 tig0046504:-1042 Msa1466300:CDS
CTCTTCAAGATTGGGAGCAG+TGG 0.521072 tig0046504:+1538 Msa1466300:intergenic
TCATGCAACTTTAGAAGAAG+TGG 0.533014 tig0046504:-1813 Msa1466300:five_prime_UTR
TGCAAAATCATACCACAAGC+AGG 0.536034 tig0046504:+1766 Msa1466300:intergenic
GCCGGCGCGATGCTACCATC+TGG 0.540690 tig0046504:-1078 Msa1466300:CDS
TGACGAAGACAAAGAGAATG+AGG 0.541807 tig0046504:+1707 Msa1466300:intergenic
TCAACAAATAGGTGTGTCAC+AGG 0.554293 tig0046504:-1503 Msa1466300:five_prime_UTR
TGCAACTTTAGAAGAAGTGG+TGG 0.570443 tig0046504:-1810 Msa1466300:five_prime_UTR
GACAATAGTGTGGAAAATGC+CGG 0.571677 tig0046504:-1096 Msa1466300:CDS
GTGAAAACATCTGCCATCAC+AGG 0.574342 tig0046504:-1048 Msa1466300:CDS
TTGCAAACCAACTCCTGTGA+TGG 0.578131 tig0046504:+1035 Msa1466300:intergenic
AACTAGTAGCATTGATGGAG+AGG 0.578826 tig0046504:-1262 Msa1466300:CDS
AAAATCACCTTCGTTAAGCA+TGG 0.585532 tig0046504:+1167 Msa1466300:intergenic
ACATCTCGATGAAGATGAAG+AGG 0.589981 tig0046504:-1292 Msa1466300:CDS
TTCTGATGGTTGGTTGTACG+AGG 0.593266 tig0046504:-1196 Msa1466300:CDS
TAGTAGCATTGATGGAGAGG+AGG 0.628348 tig0046504:-1259 Msa1466300:CDS
CACAAATGACCAATTCCAAG+TGG 0.636798 tig0046504:+1615 Msa1466300:intergenic
GAAATTGAAGGGTGCACAAG+TGG 0.638395 tig0046504:-968 Msa1466300:CDS
ACCAGATGGTAGCATCGCGC+CGG 0.639210 tig0046504:+1077 Msa1466300:intergenic
ATTTGTTTGATAGAAAATGG+AGG 0.644992 tig0046504:-936 Msa1466300:CDS
CTCTAATAAAGACAATAGTG+TGG 0.646580 tig0046504:-1106 Msa1466300:CDS
AGTCAGGATGAGAAATTGAA+GGG 0.653160 tig0046504:-979 Msa1466300:CDS
CCTGTAAAGGTAAATGACGA+AGG 0.654264 tig0046504:-1951 Msa1466300:five_prime_UTR
GCTAGAATCTTGTGTATGTG+AGG 0.660111 tig0046504:+912 Msa1466300:intergenic
CTAGAATCTTGTGTATGTGA+GGG 0.669147 tig0046504:+913 Msa1466300:intergenic
GACGAAGACAAAGAGAATGA+GGG 0.671048 tig0046504:+1708 Msa1466300:intergenic
GAAGATACCATGCTTAACGA+AGG 0.685742 tig0046504:-1174 Msa1466300:CDS
GAACTTGAAACACCGTCGTG+CGG 0.688541 tig0046504:+1513 Msa1466300:intergenic
TCTTGAAGAGCACCGCACGA+CGG 0.693891 tig0046504:-1539 Msa1466300:five_prime_UTR
GGTGGAAGCAGACCTGCTTG+TGG 0.725051 tig0046504:-1792 Msa1466300:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTAAAAGAGAAAAAA+GGG + tig0046504:851-870 Msa1466300:intergenic 15.0%
!! ATATATAAAAAATATCCACT+TGG - tig0046504:1058-1077 Msa1466300:CDS 15.0%
!! TTTAAGAAAAAAACGATTTA+CGG - tig0046504:1889-1908 Msa1466300:five_prime_UTR 15.0%
!! ATATGTAATATTTATTAGAC+TGG - tig0046504:1943-1962 Msa1466300:five_prime_UTR 15.0%
!! AAAAGTTAAAAGAGAAAAAA+GGG + tig0046504:851-870 Msa1466300:intergenic 15.0%
!! ATATATAAAAAATATCCACT+TGG - tig0046504:1058-1077 Msa1466300:CDS 15.0%
!! TTTAAGAAAAAAACGATTTA+CGG - tig0046504:1889-1908 Msa1466300:five_prime_UTR 15.0%
!! ATATGTAATATTTATTAGAC+TGG - tig0046504:1943-1962 Msa1466300:five_prime_UTR 15.0%
!! CAAAAGTTAAAAGAGAAAAA+AGG + tig0046504:852-871 Msa1466300:intergenic 20.0%
!!! GAAATTTGTTTGATAGAAAA+TGG - tig0046504:1749-1768 Msa1466300:five_prime_UTR 20.0%
!! CAAAAGTTAAAAGAGAAAAA+AGG + tig0046504:852-871 Msa1466300:intergenic 20.0%
!!! GAAATTTGTTTGATAGAAAA+TGG - tig0046504:1749-1768 Msa1466300:five_prime_UTR 20.0%
! TATATCTGATTTACCTGTAA+AGG - tig0046504:738-757 Msa1466300:three_prime_UTR 25.0%
! TGTTGACAAATAATATTGAC+AGG + tig0046504:816-835 Msa1466300:intergenic 25.0%
!!! TCTCTTTTAACTTTTGAAGT+TGG - tig0046504:856-875 Msa1466300:intron 25.0%
!!! GATTTATGAGTTTTTGAAAC+TGG + tig0046504:961-980 Msa1466300:intergenic 25.0%
!! AACAGTTTCTACATCATTTT+TGG - tig0046504:1009-1028 Msa1466300:CDS 25.0%
! AAAAAATATCCACTTGGAAT+TGG - tig0046504:1064-1083 Msa1466300:CDS 25.0%
!!! TTTCAAGTTCTTCAACAAAT+AGG - tig0046504:1188-1207 Msa1466300:CDS 25.0%
! TTCAGAATATGATTGAAGTT+TGG - tig0046504:1228-1247 Msa1466300:CDS 25.0%
!! TATGATTGAAGTTTGGAATA+AGG - tig0046504:1235-1254 Msa1466300:CDS 25.0%
!!! CAATTGTTTTACTTGCATTT+TGG + tig0046504:1285-1304 Msa1466300:intergenic 25.0%
! ATTTGTTTGATAGAAAATGG+AGG - tig0046504:1752-1771 Msa1466300:five_prime_UTR 25.0%
! TATATCTGATTTACCTGTAA+AGG - tig0046504:738-757 Msa1466300:three_prime_UTR 25.0%
! TGTTGACAAATAATATTGAC+AGG + tig0046504:816-835 Msa1466300:intergenic 25.0%
!!! TCTCTTTTAACTTTTGAAGT+TGG - tig0046504:856-875 Msa1466300:intron 25.0%
!!! GATTTATGAGTTTTTGAAAC+TGG + tig0046504:961-980 Msa1466300:intergenic 25.0%
!! AACAGTTTCTACATCATTTT+TGG - tig0046504:1009-1028 Msa1466300:CDS 25.0%
! AAAAAATATCCACTTGGAAT+TGG - tig0046504:1064-1083 Msa1466300:CDS 25.0%
!!! TTTCAAGTTCTTCAACAAAT+AGG - tig0046504:1188-1207 Msa1466300:CDS 25.0%
! TTCAGAATATGATTGAAGTT+TGG - tig0046504:1228-1247 Msa1466300:CDS 25.0%
!! TATGATTGAAGTTTGGAATA+AGG - tig0046504:1235-1254 Msa1466300:CDS 25.0%
!!! CAATTGTTTTACTTGCATTT+TGG + tig0046504:1285-1304 Msa1466300:intergenic 25.0%
! ATTTGTTTGATAGAAAATGG+AGG - tig0046504:1752-1771 Msa1466300:five_prime_UTR 25.0%
AATAAAAAAACATGCTGGCA+TGG + tig0046504:790-809 Msa1466300:intergenic 30.0%
GGATCAATAAAAAAACATGC+TGG + tig0046504:795-814 Msa1466300:intergenic 30.0%
!!! CTTTTAACTTTTGAAGTTGG+TGG - tig0046504:859-878 Msa1466300:intron 30.0%
!! TTACTTGCATTTTGGTAGAA+GGG + tig0046504:1277-1296 Msa1466300:intergenic 30.0%
!! TTTACTTGCATTTTGGTAGA+AGG + tig0046504:1278-1297 Msa1466300:intergenic 30.0%
GAAAAAGAAGACTATTCTGA+TGG - tig0046504:1478-1497 Msa1466300:five_prime_UTR 30.0%
TATTAGAGGACTCAATTTGT+TGG + tig0046504:1570-1589 Msa1466300:intergenic 30.0%
CACACTATTGTCTTTATTAG+AGG + tig0046504:1584-1603 Msa1466300:intergenic 30.0%
CTCTAATAAAGACAATAGTG+TGG - tig0046504:1582-1601 Msa1466300:five_prime_UTR 30.0%
!!! ACTTATTTTAAACGTTGCAC+AGG - tig0046504:1915-1934 Msa1466300:five_prime_UTR 30.0%
!!! CTTATTTTAAACGTTGCACA+GGG - tig0046504:1916-1935 Msa1466300:five_prime_UTR 30.0%
AATAAAAAAACATGCTGGCA+TGG + tig0046504:790-809 Msa1466300:intergenic 30.0%
GGATCAATAAAAAAACATGC+TGG + tig0046504:795-814 Msa1466300:intergenic 30.0%
!!! CTTTTAACTTTTGAAGTTGG+TGG - tig0046504:859-878 Msa1466300:intron 30.0%
!! TTACTTGCATTTTGGTAGAA+GGG + tig0046504:1277-1296 Msa1466300:intergenic 30.0%
!! TTTACTTGCATTTTGGTAGA+AGG + tig0046504:1278-1297 Msa1466300:intergenic 30.0%
GAAAAAGAAGACTATTCTGA+TGG - tig0046504:1478-1497 Msa1466300:five_prime_UTR 30.0%
TATTAGAGGACTCAATTTGT+TGG + tig0046504:1570-1589 Msa1466300:intergenic 30.0%
CACACTATTGTCTTTATTAG+AGG + tig0046504:1584-1603 Msa1466300:intergenic 30.0%
CTCTAATAAAGACAATAGTG+TGG - tig0046504:1582-1601 Msa1466300:five_prime_UTR 30.0%
!!! ACTTATTTTAAACGTTGCAC+AGG - tig0046504:1915-1934 Msa1466300:five_prime_UTR 30.0%
!!! CTTATTTTAAACGTTGCACA+GGG - tig0046504:1916-1935 Msa1466300:five_prime_UTR 30.0%
! TCATGCAACTTTAGAAGAAG+TGG - tig0046504:889-908 Msa1466300:exon 35.0%
!!! TCTATCCTTTTTGAAGCATG+TGG - tig0046504:1121-1140 Msa1466300:CDS 35.0%
!! TACTTGCATTTTGGTAGAAG+GGG + tig0046504:1276-1295 Msa1466300:intergenic 35.0%
TGAACATTTCAGACATTGAG+TGG + tig0046504:1328-1347 Msa1466300:intergenic 35.0%
! GATGAAACTAGTAGCATTGA+TGG - tig0046504:1421-1440 Msa1466300:intron 35.0%
AAGAAGACTATTCTGATGGT+TGG - tig0046504:1482-1501 Msa1466300:five_prime_UTR 35.0%
AAAATCACCTTCGTTAAGCA+TGG + tig0046504:1524-1543 Msa1466300:intergenic 35.0%
!! TTTTTGTTTGCCTTCATCTG+CGG - tig0046504:1540-1559 Msa1466300:five_prime_UTR 35.0%
TAGTCAGGATGAGAAATTGA+AGG - tig0046504:1708-1727 Msa1466300:five_prime_UTR 35.0%
AGTCAGGATGAGAAATTGAA+GGG - tig0046504:1709-1728 Msa1466300:five_prime_UTR 35.0%
CTAGAATCTTGTGTATGTGA+GGG + tig0046504:1778-1797 Msa1466300:intergenic 35.0%
! TACTGTGTCACTAAAAAGCA+GGG + tig0046504:713-732 Msa1466300:intergenic 35.0%
! TCATGCAACTTTAGAAGAAG+TGG - tig0046504:889-908 Msa1466300:exon 35.0%
!!! TCTATCCTTTTTGAAGCATG+TGG - tig0046504:1121-1140 Msa1466300:CDS 35.0%
!! TACTTGCATTTTGGTAGAAG+GGG + tig0046504:1276-1295 Msa1466300:intergenic 35.0%
TGAACATTTCAGACATTGAG+TGG + tig0046504:1328-1347 Msa1466300:intergenic 35.0%
! GATGAAACTAGTAGCATTGA+TGG - tig0046504:1421-1440 Msa1466300:intron 35.0%
AAGAAGACTATTCTGATGGT+TGG - tig0046504:1482-1501 Msa1466300:five_prime_UTR 35.0%
AAAATCACCTTCGTTAAGCA+TGG + tig0046504:1524-1543 Msa1466300:intergenic 35.0%
!! TTTTTGTTTGCCTTCATCTG+CGG - tig0046504:1540-1559 Msa1466300:five_prime_UTR 35.0%
TAGTCAGGATGAGAAATTGA+AGG - tig0046504:1708-1727 Msa1466300:five_prime_UTR 35.0%
AGTCAGGATGAGAAATTGAA+GGG - tig0046504:1709-1728 Msa1466300:five_prime_UTR 35.0%
CTAGAATCTTGTGTATGTGA+GGG + tig0046504:1778-1797 Msa1466300:intergenic 35.0%
CCTTCGTCATTTACCTTTAC+AGG + tig0046504:754-773 Msa1466300:intergenic 40.0%
CCTGTAAAGGTAAATGACGA+AGG - tig0046504:751-770 Msa1466300:three_prime_UTR 40.0%
! TGCAACTTTAGAAGAAGTGG+TGG - tig0046504:892-911 Msa1466300:exon 40.0%
TGCAAAATCATACCACAAGC+AGG + tig0046504:925-944 Msa1466300:intergenic 40.0%
GACGAAGACAAAGAGAATGA+GGG + tig0046504:983-1002 Msa1466300:intergenic 40.0%
TGACGAAGACAAAGAGAATG+AGG + tig0046504:984-1003 Msa1466300:intergenic 40.0%
CACAAATGACCAATTCCAAG+TGG + tig0046504:1076-1095 Msa1466300:intergenic 40.0%
!!! ATCCTTTTTGAAGCATGTGG+TGG - tig0046504:1124-1143 Msa1466300:CDS 40.0%
ATCCACCACATGCTTCAAAA+AGG + tig0046504:1129-1148 Msa1466300:intergenic 40.0%
TCAACAAATAGGTGTGTCAC+AGG - tig0046504:1199-1218 Msa1466300:CDS 40.0%
TGATGCTGAAGAAGAGTTCA+CGG - tig0046504:1351-1370 Msa1466300:intron 40.0%
ACATCTCGATGAAGATGAAG+AGG - tig0046504:1396-1415 Msa1466300:intron 40.0%
!! AACTAGTAGCATTGATGGAG+AGG - tig0046504:1426-1445 Msa1466300:intron 40.0%
!! TCCGAGCACTGATACATTAA+CGG - tig0046504:1453-1472 Msa1466300:intron 40.0%
TCCGTTAATGTATCAGTGCT+CGG + tig0046504:1457-1476 Msa1466300:intergenic 40.0%
GAAGATACCATGCTTAACGA+AGG - tig0046504:1514-1533 Msa1466300:five_prime_UTR 40.0%
GACAATAGTGTGGAAAATGC+CGG - tig0046504:1592-1611 Msa1466300:five_prime_UTR 40.0%
! ATGGCAGATGTTTTCACATG+TGG + tig0046504:1637-1656 Msa1466300:intergenic 40.0%
!! AGTTGGTTTGCAAGAGTTGA+TGG - tig0046504:1663-1682 Msa1466300:five_prime_UTR 40.0%
AGATGAGAAACTGAGTAGTC+AGG - tig0046504:1693-1712 Msa1466300:five_prime_UTR 40.0%
GCTAGAATCTTGTGTATGTG+AGG + tig0046504:1779-1798 Msa1466300:intergenic 40.0%
!!! GCTTGTTTTGTTGTGTGCTT+TGG - tig0046504:1816-1835 Msa1466300:five_prime_UTR 40.0%
! CTACTGTGTCACTAAAAAGC+AGG + tig0046504:714-733 Msa1466300:intergenic 40.0%
CCTTCGTCATTTACCTTTAC+AGG + tig0046504:754-773 Msa1466300:intergenic 40.0%
CCTGTAAAGGTAAATGACGA+AGG - tig0046504:751-770 Msa1466300:three_prime_UTR 40.0%
! TGCAACTTTAGAAGAAGTGG+TGG - tig0046504:892-911 Msa1466300:exon 40.0%
TGCAAAATCATACCACAAGC+AGG + tig0046504:925-944 Msa1466300:intergenic 40.0%
GACGAAGACAAAGAGAATGA+GGG + tig0046504:983-1002 Msa1466300:intergenic 40.0%
TGACGAAGACAAAGAGAATG+AGG + tig0046504:984-1003 Msa1466300:intergenic 40.0%
CACAAATGACCAATTCCAAG+TGG + tig0046504:1076-1095 Msa1466300:intergenic 40.0%
!!! ATCCTTTTTGAAGCATGTGG+TGG - tig0046504:1124-1143 Msa1466300:CDS 40.0%
ATCCACCACATGCTTCAAAA+AGG + tig0046504:1129-1148 Msa1466300:intergenic 40.0%
TCAACAAATAGGTGTGTCAC+AGG - tig0046504:1199-1218 Msa1466300:CDS 40.0%
TGATGCTGAAGAAGAGTTCA+CGG - tig0046504:1351-1370 Msa1466300:intron 40.0%
ACATCTCGATGAAGATGAAG+AGG - tig0046504:1396-1415 Msa1466300:intron 40.0%
!! AACTAGTAGCATTGATGGAG+AGG - tig0046504:1426-1445 Msa1466300:intron 40.0%
!! TCCGAGCACTGATACATTAA+CGG - tig0046504:1453-1472 Msa1466300:intron 40.0%
TCCGTTAATGTATCAGTGCT+CGG + tig0046504:1457-1476 Msa1466300:intergenic 40.0%
GAAGATACCATGCTTAACGA+AGG - tig0046504:1514-1533 Msa1466300:five_prime_UTR 40.0%
GACAATAGTGTGGAAAATGC+CGG - tig0046504:1592-1611 Msa1466300:five_prime_UTR 40.0%
! ATGGCAGATGTTTTCACATG+TGG + tig0046504:1637-1656 Msa1466300:intergenic 40.0%
!! AGTTGGTTTGCAAGAGTTGA+TGG - tig0046504:1663-1682 Msa1466300:five_prime_UTR 40.0%
AGATGAGAAACTGAGTAGTC+AGG - tig0046504:1693-1712 Msa1466300:five_prime_UTR 40.0%
GCTAGAATCTTGTGTATGTG+AGG + tig0046504:1779-1798 Msa1466300:intergenic 40.0%
!!! GCTTGTTTTGTTGTGTGCTT+TGG - tig0046504:1816-1835 Msa1466300:five_prime_UTR 40.0%
!! TAGTAGCATTGATGGAGAGG+AGG - tig0046504:1429-1448 Msa1466300:intron 45.0%
! TTCTGATGGTTGGTTGTACG+AGG - tig0046504:1492-1511 Msa1466300:five_prime_UTR 45.0%
! GTTTTCACATGTGGACCAGA+TGG + tig0046504:1628-1647 Msa1466300:intergenic 45.0%
GTGAAAACATCTGCCATCAC+AGG - tig0046504:1640-1659 Msa1466300:five_prime_UTR 45.0%
TTGCAAACCAACTCCTGTGA+TGG + tig0046504:1656-1675 Msa1466300:intergenic 45.0%
! GAAATTGAAGGGTGCACAAG+TGG - tig0046504:1720-1739 Msa1466300:five_prime_UTR 45.0%
!! TAGTAGCATTGATGGAGAGG+AGG - tig0046504:1429-1448 Msa1466300:intron 45.0%
! TTCTGATGGTTGGTTGTACG+AGG - tig0046504:1492-1511 Msa1466300:five_prime_UTR 45.0%
! GTTTTCACATGTGGACCAGA+TGG + tig0046504:1628-1647 Msa1466300:intergenic 45.0%
GTGAAAACATCTGCCATCAC+AGG - tig0046504:1640-1659 Msa1466300:five_prime_UTR 45.0%
TTGCAAACCAACTCCTGTGA+TGG + tig0046504:1656-1675 Msa1466300:intergenic 45.0%
! GAAATTGAAGGGTGCACAAG+TGG - tig0046504:1720-1739 Msa1466300:five_prime_UTR 45.0%
CTCTTCAAGATTGGGAGCAG+TGG + tig0046504:1153-1172 Msa1466300:intergenic 50.0%
GTGCGGTGCTCTTCAAGATT+GGG + tig0046504:1161-1180 Msa1466300:intergenic 50.0%
GAACTTGAAACACCGTCGTG+CGG + tig0046504:1178-1197 Msa1466300:intergenic 50.0%
ACATCTGCCATCACAGGAGT+TGG - tig0046504:1646-1665 Msa1466300:five_prime_UTR 50.0%
CTCTTCAAGATTGGGAGCAG+TGG + tig0046504:1153-1172 Msa1466300:intergenic 50.0%
GTGCGGTGCTCTTCAAGATT+GGG + tig0046504:1161-1180 Msa1466300:intergenic 50.0%
GAACTTGAAACACCGTCGTG+CGG + tig0046504:1178-1197 Msa1466300:intergenic 50.0%
ACATCTGCCATCACAGGAGT+TGG - tig0046504:1646-1665 Msa1466300:five_prime_UTR 50.0%
CGTGCGGTGCTCTTCAAGAT+TGG + tig0046504:1162-1181 Msa1466300:intergenic 55.0%
!! TCTTGAAGAGCACCGCACGA+CGG - tig0046504:1163-1182 Msa1466300:CDS 55.0%
TGTTGGTCAGCCGCAGATGA+AGG + tig0046504:1553-1572 Msa1466300:intergenic 55.0%
CGTGCGGTGCTCTTCAAGAT+TGG + tig0046504:1162-1181 Msa1466300:intergenic 55.0%
!! TCTTGAAGAGCACCGCACGA+CGG - tig0046504:1163-1182 Msa1466300:CDS 55.0%
TGTTGGTCAGCCGCAGATGA+AGG + tig0046504:1553-1572 Msa1466300:intergenic 55.0%
GGTGGAAGCAGACCTGCTTG+TGG - tig0046504:910-929 Msa1466300:CDS 60.0%
ACCAGATGGTAGCATCGCGC+CGG + tig0046504:1614-1633 Msa1466300:intergenic 60.0%
GGTGGAAGCAGACCTGCTTG+TGG - tig0046504:910-929 Msa1466300:CDS 60.0%
ACCAGATGGTAGCATCGCGC+CGG + tig0046504:1614-1633 Msa1466300:intergenic 60.0%
GCCGGCGCGATGCTACCATC+TGG - tig0046504:1610-1629 Msa1466300:five_prime_UTR 70.0%
GCCGGCGCGATGCTACCATC+TGG - tig0046504:1610-1629 Msa1466300:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0046504 gene 713 1997 713 ID=Msa1466300;Name=Msa1466300
tig0046504 mRNA 713 1997 713 ID=Msa1466300-mRNA-1;Parent=Msa1466300;Name=Msa1466300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=523|1|1|1|0.5|0.33|3|155|162
tig0046504 exon 713 851 713 ID=Msa1466300-mRNA-1:exon:25045;Parent=Msa1466300-mRNA-1
tig0046504 exon 878 1361 878 ID=Msa1466300-mRNA-1:exon:25044;Parent=Msa1466300-mRNA-1
tig0046504 exon 1454 1997 1454 ID=Msa1466300-mRNA-1:exon:25043;Parent=Msa1466300-mRNA-1
tig0046504 five_prime_UTR 1475 1997 1475 ID=Msa1466300-mRNA-1:five_prime_utr;Parent=Msa1466300-mRNA-1
tig0046504 CDS 1454 1474 1454 ID=Msa1466300-mRNA-1:cds;Parent=Msa1466300-mRNA-1
tig0046504 CDS 894 1361 894 ID=Msa1466300-mRNA-1:cds;Parent=Msa1466300-mRNA-1
tig0046504 three_prime_UTR 878 893 878 ID=Msa1466300-mRNA-1:three_prime_utr;Parent=Msa1466300-mRNA-1
tig0046504 three_prime_UTR 713 851 713 ID=Msa1466300-mRNA-1:three_prime_utr;Parent=Msa1466300-mRNA-1
Gene Sequence

>Msa1466300

ATGATTGAAGTTTGGAATAAGATTGATGCTGAAGAAGAGTTCACGGATGTTGATGAGAATGTTGATGAACATCTCGATGAAGATGAAGAGGCTGATGAAACTAGTAGCATTGATGGAGAGGAGGATCCGAGCACTGATACATTAACGGAAGAAAAAGAAGACTATTCTGATGGTTGGTTGTACGAGGAAGATACCATGCTTAACGAAGGTGATTTTTGTTTGCCTTCATCTGCGGCTGACCAACAAATTGAGTCCTCTAATAAAGACAATAGTGTGGAAAATGCCGGCGCGATGCTACCATCTGGTCCACATGTGAAAACATCTGCCATCACAGGAGTTGGTTTGCAAGAGTTGATGGAACTAATAGATGAGAAACTGAGTAGTCAGGATGAGAAATTGAAGGGTGCACAAGTGGTTGAAAGAAATTTGTTTGATAGAAAATGGAGGCCCTCACATACACAAGATTCTAGCATTGCAGTAGAAAATTAG

Protein sequence

>Msa1466300

MIEVWNKIDAEEEFTDVDENVDEHLDEDEEADETSSIDGEEDPSTDTLTEEKEDYSDGWLYEEDTMLNEGDFCLPSSAADQQIESSNKDNSVENAGAMLPSGPHVKTSAITGVGLQELMELIDEKLSSQDEKLKGAQVVERNLFDRKWRPSHTQDSSIAVEN*