AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1383530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383530 MtrunA17_Chr5g0416711 95.492 732 33 0 1 732 1 732 0.0 1449
Msa1383530 MtrunA17_Chr8g0361901 80.874 732 139 1 1 732 1 731 0.0 1241
Msa1383530 MtrunA17_Chr1g0166181 77.931 725 154 3 11 732 18 739 0.0 1162
Msa1383530 MtrunA17_Chr1g0166131 77.241 725 159 3 11 732 19 740 0.0 1137
Msa1383530 MtrunA17_Chr6g0453061 71.193 729 209 1 5 732 2 730 0.0 1095
Msa1383530 MtrunA17_Chr6g0453081 68.313 729 230 1 5 732 2 730 0.0 1042
Msa1383530 MtrunA17_Chr7g0231701 75.441 680 156 2 53 732 40 708 0.0 1042
Msa1383530 MtrunA17_Chr1g0166141 78.930 598 124 1 137 732 77 674 0.0 971
Msa1383530 MtrunA17_Chr1g0166141 82.895 76 13 0 278 353 1 76 3.92e-33 136
Msa1383530 MtrunA17_Chr7g0231741 97.067 375 11 0 358 732 1 375 0.0 757
Msa1383530 MtrunA17_Chr7g0231751 92.903 310 22 0 1 310 1 310 0.0 597
Msa1383530 MtrunA17_Chr5g0416731 66.184 414 95 2 53 421 25 438 0.0 529
Msa1383530 MtrunA17_Chr2g0285881 41.201 716 400 12 24 732 91 792 5.68e-172 513
Msa1383530 MtrunA17_Chr5g0416831 73.006 326 51 2 407 732 1 289 5.14e-165 476
Msa1383530 MtrunA17_Chr5g0416691 58.065 403 163 3 332 732 3 401 4.86e-164 478
Msa1383530 MtrunA17_Chr7g0231791 57.816 403 164 3 332 732 3 401 7.26e-162 473
Msa1383530 MtrunA17_Chr7g0231721 70.213 329 91 2 53 380 25 347 3.83e-156 456
Msa1383530 MtrunA17_Chr5g0416901 66.877 317 104 1 55 371 21 336 7.07e-144 425
Msa1383530 MtrunA17_Chr7g0231581 66.134 313 105 1 59 371 1 312 1.56e-140 415
Msa1383530 MtrunA17_Chr2g0296381 34.153 732 439 15 32 732 23 742 6.29e-125 389
Msa1383530 MtrunA17_Chr4g0067011 33.653 731 444 14 32 732 25 744 5.94e-121 379
Msa1383530 MtrunA17_Chr7g0231571 69.106 246 75 1 59 304 1 245 3.26e-111 337
Msa1383530 MtrunA17_Chr5g0416911 67.200 250 81 1 55 304 5 253 4.28e-109 332
Msa1383530 MtrunA17_Chr1g0166151 70.109 184 54 1 83 266 1 183 4.04e-83 261
Msa1383530 MtrunA17_Chr7g0268881 40.150 401 210 9 347 732 4 389 6.41e-81 263
Msa1383530 MtrunA17_Chr7g0231801 51.394 251 120 2 59 307 1 251 9.81e-77 247
Msa1383530 MtrunA17_Chr5g0416681 51.394 251 120 2 59 307 1 251 4.27e-76 245
Msa1383530 MtrunA17_Chr5g0416931 70.909 165 48 0 53 217 38 202 2.03e-75 242
Msa1383530 MtrunA17_Chr7g0231561 68.944 161 50 0 59 219 1 161 4.26e-72 231
Msa1383530 MtrunA17_Chr5g0416841 70.526 95 28 0 203 297 10 104 1.99e-39 140
Msa1383530 MtrunA17_Chr7g0268891 27.742 310 207 5 26 320 9 316 1.29e-34 135
Msa1383530 MtrunA17_Chr7g0231711 68.519 54 16 1 1 54 1 53 1.28e-17 77.8
Msa1383530 MtrunA17_Chr5g0416721 61.111 54 21 0 1 54 1 54 2.11e-16 73.9
Msa1383530 MtrunA17_Chr7g0231731 59.259 54 22 0 1 54 1 54 3.83e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383530 AT1G26830.1 74.180 732 189 0 1 732 1 732 0.0 1165
Msa1383530 AT1G69670.1 72.268 732 203 0 1 732 1 732 0.0 1137
Msa1383530 AT1G69670.2 72.268 732 203 0 1 732 1 732 0.0 1137
Msa1383530 AT5G46210.1 40.460 739 418 13 1 732 69 792 3.58e-165 496
Msa1383530 AT4G02570.4 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa1383530 AT4G02570.2 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa1383530 AT4G02570.1 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa1383530 AT4G02570.3 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa1383530 AT1G02980.1 31.888 715 440 14 51 732 42 742 3.94e-108 346
Msa1383530 AT1G02980.2 31.888 715 440 14 51 732 42 742 3.94e-108 346
Msa1383530 AT1G43140.1 32.528 704 419 15 52 732 51 721 3.79e-101 327
Msa1383530 AT1G59790.2 26.829 328 216 9 52 366 48 364 2.91e-26 111
Msa1383530 AT1G59790.1 26.398 322 213 9 51 359 47 357 2.02e-24 106
Msa1383530 AT1G59800.1 25.490 204 146 3 52 251 43 244 1.14e-17 84.0
Msa1383530 AT4G12100.1 22.253 364 237 11 24 368 76 412 1.27e-16 83.6

Find 172 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTAGGTCCTTCTGTTTA+TGG 0.117167 tig0020603:+48958 Msa1383530:CDS
ACAGGATCCTTCAACCTTTC+AGG 0.147657 tig0020603:-49369 None:intergenic
AATATGGTTCTTCACAAATT+TGG 0.179774 tig0020603:+48574 Msa1383530:CDS
CACTCAAGGAAGTTCCTTTC+TGG 0.187285 tig0020603:+48669 Msa1383530:CDS
TTTATTGAGTGCTGTGGTTC+TGG 0.191669 tig0020603:+49045 Msa1383530:CDS
TCGACTGTTGAATATGCTTT+TGG 0.245448 tig0020603:+48861 Msa1383530:CDS
ATTGACGTGGCAAACTAATA+TGG 0.248034 tig0020603:+50004 Msa1383530:CDS
ACGTCAATTTCCTGCCATTA+TGG 0.248558 tig0020603:-49989 None:intergenic
ATTCAACAAGATTATAGATT+TGG 0.266006 tig0020603:+49428 Msa1383530:CDS
TTAATCTATAAGGAGTCTTC+TGG 0.270183 tig0020603:+49201 Msa1383530:CDS
TTAGCTTTGAAGAGCTTTAC+AGG 0.270979 tig0020603:+45953 Msa1383530:CDS
TGATGATAAATATGAAGATT+TGG 0.279943 tig0020603:+49242 Msa1383530:CDS
TCACTATTGCTGCTTCAATC+TGG 0.281451 tig0020603:-50397 None:intergenic
GTTGTGCTCAAGTTGCTTCC+TGG 0.283417 tig0020603:-50432 None:intergenic
AATTGGTAAGCTTGTTTGTT+TGG 0.290119 tig0020603:+50602 Msa1383530:three_prime_UTR
CACTATTGCTGCTTCAATCT+GGG 0.291769 tig0020603:-50396 None:intergenic
CAGCACTTTGCGAGAAATTT+CGG 0.292111 tig0020603:+49949 Msa1383530:CDS
GCAGACTTAAAAGCTACTTT+TGG 0.295841 tig0020603:+50032 Msa1383530:CDS
TTCTTTACATCCGTTGGATT+TGG 0.302500 tig0020603:-50500 None:intergenic
GCAATCATTGGCTTTGGTTA+AGG 0.303138 tig0020603:+50193 Msa1383530:CDS
TCAACAGTCGAGTCCTTATC+TGG 0.305371 tig0020603:-48849 None:intergenic
CGTCAATTTCCTGCCATTAT+GGG 0.309194 tig0020603:-49988 None:intergenic
GGAATCGGAACTGGAGAAAC+TGG 0.315369 tig0020603:+50340 Msa1383530:CDS
ACAAAGATGCTAATGGATTT+AGG 0.324791 tig0020603:+48943 Msa1383530:CDS
CCAATTTACCGCAAAATTAG+AGG 0.325857 tig0020603:+49767 Msa1383530:CDS
ATGAGGAATTCAGATCTTTC+AGG 0.328092 tig0020603:-49473 None:intergenic
CAAACAAGCTTACCAATTCT+AGG 0.340066 tig0020603:-50597 None:intergenic
TAAGTAGAAATGAGTGTAGT+TGG 0.340089 tig0020603:-50780 None:intergenic
GTAATCTTCGTTTCAGTTCC+AGG 0.340515 tig0020603:-49135 None:intergenic
GGTTCTATTCCGGTATTTGC+AGG 0.345096 tig0020603:+49623 Msa1383530:CDS
TGATAAAACTTGGATCATTC+TGG 0.345686 tig0020603:+45888 Msa1383530:CDS
ATTTAGGTCCTTCTGTTTAT+GGG 0.347103 tig0020603:+48959 Msa1383530:CDS
CAATCATTGGCTTTGGTTAA+GGG 0.347835 tig0020603:+50194 Msa1383530:CDS
AAGCTTCAACTGAGTTCTAT+AGG 0.353571 tig0020603:+49007 Msa1383530:CDS
CATGCTTAGATTAATCTATA+AGG 0.358765 tig0020603:+49191 Msa1383530:CDS
ACAAGGTTATGGTTCTATTC+CGG 0.358842 tig0020603:+49613 Msa1383530:CDS
CGCGAAAATTCCTCTTCCTT+GGG 0.361595 tig0020603:-45822 None:intergenic
ACGCGAAAATTCCTCTTCCT+TGG 0.366742 tig0020603:-45823 None:intergenic
GATTACCCTTGACAAGGTTA+TGG 0.368294 tig0020603:+49602 Msa1383530:CDS
TGGAAGAATTAAACAGAAAG+TGG 0.370300 tig0020603:+48689 Msa1383530:CDS
GATGATAAATATGAAGATTT+GGG 0.381206 tig0020603:+49243 Msa1383530:CDS
ATCGATATCTTGCCTAGAAT+TGG 0.384579 tig0020603:+50585 Msa1383530:exon
TCAGTTGAAGCTTGCAGAAA+AGG 0.388471 tig0020603:-48997 None:intergenic
TTATTGAGTGCTGTGGTTCT+GGG 0.394402 tig0020603:+49046 Msa1383530:CDS
GTGCCTGCAATCATTGGCTT+TGG 0.396338 tig0020603:+50187 Msa1383530:CDS
ACTGTGCAGGTTCTGACAAC+AGG 0.396783 tig0020603:+49876 Msa1383530:CDS
ATTGGTAAGCTTGTTTGTTT+GGG 0.398347 tig0020603:+50603 Msa1383530:three_prime_UTR
AATGCCGACCACCCTGAGTT+AGG 0.401152 tig0020603:+49837 Msa1383530:CDS
ATCCGTTTCTTTACATCCGT+TGG 0.402613 tig0020603:-50506 None:intergenic
CGAGGTATGGTGATAAAACT+TGG 0.413055 tig0020603:+45878 Msa1383530:CDS
ACTTGAGCACAACAATCTTA+TGG 0.413342 tig0020603:+50442 Msa1383530:CDS
GAAGAGGTGCCTGCAATCAT+TGG 0.418942 tig0020603:+50181 Msa1383530:CDS
AGGAACTGTTGTTGCACAAA+AGG 0.420428 tig0020603:+50319 Msa1383530:CDS
TAACCAAAGCCAATGATTGC+AGG 0.428278 tig0020603:-50190 None:intergenic
AAAACAACTGTTTATGAACT+TGG 0.428702 tig0020603:+48790 Msa1383530:CDS
AAGTATAACAAAGATGCTAA+TGG 0.442676 tig0020603:+48936 Msa1383530:CDS
AGCTTCAACTGAGTTCTATA+GGG 0.452068 tig0020603:+49008 Msa1383530:CDS
TCTGTTTAATTCTTCCAGAA+AGG 0.455958 tig0020603:-48683 None:intergenic
AGCCTCTGCACAAATTCAAC+AGG 0.456083 tig0020603:-49387 None:intergenic
GTGAAATGTACTCTGGAATA+CGG 0.457810 tig0020603:-49521 None:intergenic
TGCACAAAAGGAATCGGAAC+TGG 0.458457 tig0020603:+50331 Msa1383530:CDS
CATGAGTACACACATTTGAT+AGG 0.461173 tig0020603:-50087 None:intergenic
ATATAGGAATGCTTACAATA+TGG 0.464480 tig0020603:+48558 Msa1383530:intron
TTCTTCATTCAAACCAGATA+AGG 0.468077 tig0020603:+48836 Msa1383530:CDS
AAGCTTCGAAAAGGTCTAAA+GGG 0.471351 tig0020603:+49558 Msa1383530:CDS
TACTGATCCTGAAAGGTTGA+AGG 0.474245 tig0020603:+49362 Msa1383530:CDS
TAATCTATAAGGAGTCTTCT+GGG 0.474589 tig0020603:+49202 Msa1383530:CDS
TGATAGAGTGAGCCACTACT+TGG 0.476648 tig0020603:+49110 Msa1383530:CDS
CAACAGATCTAGCCATCTCT+TGG 0.478016 tig0020603:-48642 None:intergenic
TGAAATGTACTCTGGAATAC+GGG 0.483088 tig0020603:-49520 None:intergenic
AAAGTGGGATGACCACAATA+AGG 0.483530 tig0020603:+48705 Msa1383530:CDS
CACCTCTTCAAATCTGATGC+TGG 0.488180 tig0020603:-50167 None:intergenic
TTGACGTGGCAAACTAATAT+GGG 0.489497 tig0020603:+50005 Msa1383530:CDS
GAGGAAGACATTAATGTGAT+AGG 0.490979 tig0020603:-50758 None:intergenic
AATGTTGTGTCTTGTGAACT+AGG 0.494578 tig0020603:+50643 Msa1383530:three_prime_UTR
TACCCACAGGCTCCTTCCTA+AGG 0.495503 tig0020603:-50226 None:intergenic
GTAGGACCATCGCCTAACTC+AGG 0.500013 tig0020603:-49849 None:intergenic
CAGAAAGGAACTTCCTTGAG+TGG 0.500983 tig0020603:-48668 None:intergenic
TTAAGGGAAGAAATGTCCTT+AGG 0.501041 tig0020603:+50210 Msa1383530:CDS
CTTATACTACAAGTTGATGT+GGG 0.502278 tig0020603:+50799 Msa1383530:three_prime_UTR
ACACATTCTATGTTAATGAC+AGG 0.505783 tig0020603:+50267 Msa1383530:CDS
TAAGCTTCGAAAAGGTCTAA+AGG 0.508584 tig0020603:+49557 Msa1383530:CDS
CAGTTCCAGGGTCCAAGTAG+TGG 0.509512 tig0020603:-49122 None:intergenic
TAGTGAGGATTATGAAATCC+AGG 0.510423 tig0020603:+50414 Msa1383530:CDS
TATTACCTCAGCACCCATAA+TGG 0.510591 tig0020603:+49975 Msa1383530:CDS
AGGTTCTGACAACAGGGTCT+TGG 0.511218 tig0020603:+49883 Msa1383530:CDS
GGCTGAGATGCGTCTGAATG+AGG 0.515956 tig0020603:+49083 Msa1383530:CDS
GTAAGCTTGTTTGTTTGGGT+AGG 0.516631 tig0020603:+50607 Msa1383530:three_prime_UTR
GATTACTACTCTGGTGGAGA+AGG 0.517289 tig0020603:+49152 Msa1383530:CDS
TAATCTTCGTTTCAGTTCCA+GGG 0.519743 tig0020603:-49134 None:intergenic
TGTTGTTGCACAAAAGGAAT+CGG 0.522411 tig0020603:+50325 Msa1383530:CDS
AGATGAGTAACCCAAGGAAG+AGG 0.525328 tig0020603:+45812 Msa1383530:exon
CAGACAAAAGCCGCTTTGCA+AGG 0.528971 tig0020603:-49680 None:intergenic
ATCCAACGGATGTAAAGAAA+CGG 0.530115 tig0020603:+50504 Msa1383530:CDS
ACTATTGCTGCTTCAATCTG+GGG 0.530507 tig0020603:-50395 None:intergenic
ACCGGCGAAGTTGTTAATAG+AGG 0.533572 tig0020603:+48904 Msa1383530:CDS
AGGTCTAAAGGGAGTTAGTG+AGG 0.534609 tig0020603:+49569 Msa1383530:CDS
GTAGAAATGAGTGTAGTTGG+AGG 0.536698 tig0020603:-50777 None:intergenic
CAGATATTTATTGAGTGCTG+TGG 0.538710 tig0020603:+49039 Msa1383530:CDS
TTACATCCGTTGGATTTGGA+AGG 0.539177 tig0020603:-50496 None:intergenic
TTTAGGTCCTTCTGTTTATG+GGG 0.542075 tig0020603:+48960 Msa1383530:CDS
ACAAAGAGTGAAATGTACTC+TGG 0.543670 tig0020603:-49528 None:intergenic
ACCTCAGCACCCATAATGGC+AGG 0.544192 tig0020603:+49979 Msa1383530:CDS
AACTTGTTCAGTCGTGTCAC+CGG 0.544635 tig0020603:+49276 Msa1383530:CDS
GTGAGCCACTACTTGGACCC+TGG 0.545452 tig0020603:+49117 Msa1383530:CDS
CGAGAGGCTATACTCTGGGC+TGG 0.546564 tig0020603:+48597 Msa1383530:CDS
GTAGACGATAAGCTTCGAAA+AGG 0.549522 tig0020603:+49549 Msa1383530:CDS
GATTGAGTCTCTCCTTGAGC+GGG 0.549775 tig0020603:+50526 Msa1383530:CDS
ACATTCTGATGTACATGGAC+AGG 0.551895 tig0020603:+48746 Msa1383530:CDS
TGAAACGAAGATTACTACTC+TGG 0.553950 tig0020603:+49143 Msa1383530:CDS
ATTTATGATCATAATGCTAG+TGG 0.555562 tig0020603:+45928 Msa1383530:CDS
TTCCAGCATCAGATTTGAAG+AGG 0.558511 tig0020603:+50165 Msa1383530:CDS
ACTTATACTACAAGTTGATG+TGG 0.559434 tig0020603:+50798 Msa1383530:three_prime_UTR
TCCTGCCATTATGGGTGCTG+AGG 0.559850 tig0020603:-49980 None:intergenic
GTGCTGACATTTCTGTCGGA+AGG 0.563439 tig0020603:-49932 None:intergenic
CAATTTACCGCAAAATTAGA+GGG 0.563610 tig0020603:+49768 Msa1383530:CDS
TGGTCCTACACTAACTGTGC+AGG 0.566945 tig0020603:+49863 Msa1383530:CDS
TCATTTGTAATGCCTTATTG+TGG 0.567815 tig0020603:-48717 None:intergenic
CTCTTGGAGATGAGAAGTCA+TGG 0.572652 tig0020603:-48626 None:intergenic
TGCTGATAGACTAAGCTACA+AGG 0.574564 tig0020603:+50121 Msa1383530:CDS
TCCTCTATTAACAACTTCGC+CGG 0.574652 tig0020603:-48905 None:intergenic
TGTCCTTAGGAAGGAGCCTG+TGG 0.575541 tig0020603:+50223 Msa1383530:CDS
GACCACCCTGAGTTAGGCGA+TGG 0.575850 tig0020603:+49843 Msa1383530:CDS
GACTTCTCATCTCCAAGAGA+TGG 0.576415 tig0020603:+48630 Msa1383530:CDS
CAAAGTGCTGACATTTCTGT+CGG 0.576497 tig0020603:-49936 None:intergenic
TATTGAGTGCTGTGGTTCTG+GGG 0.577754 tig0020603:+49047 Msa1383530:CDS
GGGAAGAAATGTCCTTAGGA+AGG 0.582948 tig0020603:+50214 Msa1383530:CDS
TTCTTCACAAATTTGGCGAG+AGG 0.583661 tig0020603:+48581 Msa1383530:CDS
TTGGCGAGAGGCTATACTCT+GGG 0.583670 tig0020603:+48593 Msa1383530:CDS
GGAAGAATTAAACAGAAAGT+GGG 0.584845 tig0020603:+48690 Msa1383530:CDS
TTTGGCGAGAGGCTATACTC+TGG 0.586097 tig0020603:+48592 Msa1383530:CDS
ATAAATATGAAGATTTGGGT+AGG 0.586773 tig0020603:+49247 Msa1383530:CDS
TAGAGACATTCTGATGTACA+TGG 0.588793 tig0020603:+48741 Msa1383530:CDS
AGATCTGTTGAAGCCACTCA+AGG 0.592937 tig0020603:+48655 Msa1383530:CDS
AGAAGAAGATGAGTAACCCA+AGG 0.593480 tig0020603:+45806 Msa1383530:exon
ATCGCCTAACTCAGGGTGGT+CGG 0.593707 tig0020603:-49841 None:intergenic
ACTTCATACGTCAAAGACTA+CGG 0.595144 tig0020603:+49327 Msa1383530:CDS
GCACAACAATCTTATGGCTG+AGG 0.595338 tig0020603:+50448 Msa1383530:CDS
ATGAACTTGGTCAGAACCTG+TGG 0.595675 tig0020603:+48803 Msa1383530:CDS
TTCTGGGGATTATCTCAAGA+AGG 0.597654 tig0020603:+49062 Msa1383530:CDS
GTTGTAATGGATCCGAGGTA+TGG 0.601802 tig0020603:+45865 Msa1383530:CDS
AGCTTGTTACTGATCCTGAA+AGG 0.602699 tig0020603:+49355 Msa1383530:CDS
ATAGAACCATAACCTTGTCA+AGG 0.604566 tig0020603:-49608 None:intergenic
AATTCTTCCCCATAAACAGA+AGG 0.608454 tig0020603:-48967 None:intergenic
AACGAAGATTACTACTCTGG+TGG 0.609690 tig0020603:+49146 Msa1383530:CDS
TGCAGAGATTACCCTTGACA+AGG 0.610325 tig0020603:+49596 Msa1383530:CDS
TCGCAAACATCTTTACCCAC+AGG 0.610963 tig0020603:-50239 None:intergenic
TTAGTACACAGTGAGCGTAC+CGG 0.613443 tig0020603:+48886 Msa1383530:CDS
TACTCTGGTGGAGAAGGAGA+TGG 0.615285 tig0020603:+49158 Msa1383530:CDS
TAGAACCATAACCTTGTCAA+GGG 0.616816 tig0020603:-49607 None:intergenic
CATGTCACACTAGATTGAGC+TGG 0.619728 tig0020603:-49906 None:intergenic
GTTAAGCTGAAGACAGAATG+TGG 0.624729 tig0020603:+49741 Msa1383530:CDS
GAGTACACACATTTGATAGG+TGG 0.629808 tig0020603:-50084 None:intergenic
ACAAGCAGCACCTTGCAAAG+CGG 0.644467 tig0020603:+49670 Msa1383530:CDS
TTGTTCAGTCGTGTCACCGG+TGG 0.648925 tig0020603:+49279 Msa1383530:CDS
TAGGACCATCGCCTAACTCA+GGG 0.650482 tig0020603:-49848 None:intergenic
GGATTGAGTCTCTCCTTGAG+CGG 0.650864 tig0020603:+50525 Msa1383530:CDS
ATCCTGTTGAATTTGTGCAG+AGG 0.652724 tig0020603:+49385 Msa1383530:CDS
GCGATTCCTTCCAAATCCAA+CGG 0.655030 tig0020603:+50490 Msa1383530:CDS
CTGTGCAGGTTCTGACAACA+GGG 0.655678 tig0020603:+49877 Msa1383530:CDS
GTCCTTAGGAAGGAGCCTGT+GGG 0.656948 tig0020603:+50224 Msa1383530:CDS
AGAACCTGCACAGTTAGTGT+AGG 0.658313 tig0020603:-49867 None:intergenic
CAGTTTCTGATGATGCTGAG+AGG 0.661049 tig0020603:+49709 Msa1383530:CDS
AGATTGAAGCAGCAATAGTG+AGG 0.663820 tig0020603:+50399 Msa1383530:CDS
ATGTGGTTGTAATGGATCCG+AGG 0.669826 tig0020603:+45860 Msa1383530:CDS
TTATACTACAAGTTGATGTG+GGG 0.681618 tig0020603:+50800 Msa1383530:three_prime_UTR
GAAATGTACTCTGGAATACG+GGG 0.691252 tig0020603:-49519 None:intergenic
TTTGAGTTGAGAGAAAATGG+TGG 0.695166 tig0020603:-45605 None:intergenic
GACCATCGCCTAACTCAGGG+TGG 0.727453 tig0020603:-49845 None:intergenic
TGTGGGTAAAGATGTTTGCG+AGG 0.737739 tig0020603:+50241 Msa1383530:CDS
ATAATGGCAGGAAATTGACG+TGG 0.739143 tig0020603:+49991 Msa1383530:CDS
TTGGAGATGAGAAGTCATGG+TGG 0.753515 tig0020603:-48623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTATGTTTAAAACT+CGG - tig0020603:46192-46211 None:intergenic 10.0%
!!! ATTGTTTTATAAGATATATA+GGG + tig0020603:46395-46414 Msa1383530:intron 10.0%
!! AAAAGATGTAAATTATATTA+TGG + tig0020603:47846-47865 Msa1383530:intron 10.0%
!! ATTCAAATAAAATTCTAATT+TGG - tig0020603:47911-47930 None:intergenic 10.0%
!!! ACTATTTTATTTTCATTATT+AGG - tig0020603:48229-48248 None:intergenic 10.0%
!! TTCTATAAACTATTAAATAA+AGG - tig0020603:48393-48412 None:intergenic 10.0%
!!! TTTTTTAATGGAATTAATCT+AGG + tig0020603:45715-45734 Msa1383530:intron 15.0%
!!! TGATTTCTATTATTTGTTAT+TGG + tig0020603:45988-46007 Msa1383530:intron 15.0%
!!! CTTGTTTTTAATGATATATA+GGG + tig0020603:46089-46108 Msa1383530:intron 15.0%
!!! TTGTTTTTAATGATATATAG+GGG + tig0020603:46090-46109 Msa1383530:intron 15.0%
!!! GATTGTTTTATAAGATATAT+AGG + tig0020603:46394-46413 Msa1383530:intron 15.0%
!!! AGTTAAATTGTTTTCATATA+TGG - tig0020603:46542-46561 None:intergenic 15.0%
!!! TGAAAATATTTTGAAAACTA+TGG - tig0020603:46802-46821 None:intergenic 15.0%
!!! GTTTTCAAAATATTTTCATA+AGG + tig0020603:46804-46823 Msa1383530:intron 15.0%
!! TTTAGTCAAATAGAAAATTA+GGG - tig0020603:46881-46900 None:intergenic 15.0%
!! AAAATAATTAAGATGTCATA+TGG - tig0020603:47501-47520 None:intergenic 15.0%
!! TACTTTATTGTCTTTATTAT+GGG + tig0020603:48497-48516 Msa1383530:intron 15.0%
!! AAACTGTATAAGATAAAAAT+AGG + tig0020603:50299-50318 Msa1383530:CDS 15.0%
!! GAAAGATTAATAACAAGAAA+AGG - tig0020603:45675-45694 None:intergenic 20.0%
!!! TCAATTTGATGGTTTTTTAA+TGG + tig0020603:45703-45722 Msa1383530:intron 20.0%
!! AATTAATCTAGGTTATGTAA+TGG + tig0020603:45726-45745 Msa1383530:intron 20.0%
!!! TTTTTTTTTTGTTGCATTGT+AGG + tig0020603:45761-45780 Msa1383530:intron 20.0%
!!! GCTTGTTTTTAATGATATAT+AGG + tig0020603:46088-46107 Msa1383530:intron 20.0%
!!! AAGTTGTTTTTATTTGTTGT+TGG + tig0020603:46286-46305 Msa1383530:intron 20.0%
!!! TTGTCATTGGATTTTTTTTA+GGG + tig0020603:46628-46647 Msa1383530:intron 20.0%
!!! TTTTTTAGGGGTTTTTATAA+TGG + tig0020603:46641-46660 Msa1383530:intron 20.0%
!!! AAAGCAAAAATTTTCAATCT+AGG + tig0020603:46681-46700 Msa1383530:intron 20.0%
!!! AAGCAAAAATTTTCAATCTA+GGG + tig0020603:46682-46701 Msa1383530:intron 20.0%
!! CTTTAGTCAAATAGAAAATT+AGG - tig0020603:46882-46901 None:intergenic 20.0%
!! TAGATTTCAAAAAGGAAAAT+AGG + tig0020603:47447-47466 Msa1383530:intron 20.0%
!! AGATTTCAAAAAGGAAAATA+GGG + tig0020603:47448-47467 Msa1383530:intron 20.0%
!!! TTTTAAAAACTCCATATTTC+AGG + tig0020603:47517-47536 Msa1383530:intron 20.0%
!! TGTAATTAATACCTGAAATA+TGG - tig0020603:47531-47550 None:intergenic 20.0%
!! ACATAAAAAAGTTAATTGCT+AGG - tig0020603:47583-47602 None:intergenic 20.0%
!!! AGGAAGTATTAAATGTTTTT+AGG - tig0020603:47688-47707 None:intergenic 20.0%
!!! CTTTTAAACCAATAATTAGA+TGG + tig0020603:48303-48322 Msa1383530:intron 20.0%
!! TAAACTATTAAATAAAGGAG+AGG - tig0020603:48388-48407 None:intergenic 20.0%
!! GTACTTTATTGTCTTTATTA+TGG + tig0020603:48496-48515 Msa1383530:intron 20.0%
!!! TATTTTTCATCTTTATCTTG+TGG + tig0020603:48535-48554 Msa1383530:intron 20.0%
!! TGATGATAAATATGAAGATT+TGG + tig0020603:49242-49261 Msa1383530:CDS 20.0%
!! GATGATAAATATGAAGATTT+GGG + tig0020603:49243-49262 Msa1383530:CDS 20.0%
!! ATTCAACAAGATTATAGATT+TGG + tig0020603:49428-49447 Msa1383530:CDS 20.0%
! TTACTGAAAAAGTGATTATG+AGG - tig0020603:45644-45663 None:intergenic 25.0%
!! TTCTTTTCTCTTCAATTTGA+TGG + tig0020603:45692-45711 Msa1383530:intron 25.0%
! ATTTATGATCATAATGCTAG+TGG + tig0020603:45928-45947 Msa1383530:CDS 25.0%
!! TAATATTTTGTGACACTGTT+TGG + tig0020603:46203-46222 Msa1383530:intron 25.0%
! AACTTATGAACAATCGTATA+AGG - tig0020603:46246-46265 None:intergenic 25.0%
!!! TTTTATTTGTTGTTGGTTCT+AGG + tig0020603:46293-46312 Msa1383530:intron 25.0%
!!! GTTGTCATTGGATTTTTTTT+AGG + tig0020603:46627-46646 Msa1383530:intron 25.0%
!!! TGTCATTGGATTTTTTTTAG+GGG + tig0020603:46629-46648 Msa1383530:intron 25.0%
!! GGTTTTTATAATGGTCAAAT+TGG + tig0020603:46650-46669 Msa1383530:intron 25.0%
!! TTGAAAATTTTTGCTTTCCT+AGG - tig0020603:46678-46697 None:intergenic 25.0%
!! TTTATTACTTTGGAGATGTT+TGG + tig0020603:46705-46724 Msa1383530:intron 25.0%
! TATGACAATAAGTGATTTGA+AGG - tig0020603:46831-46850 None:intergenic 25.0%
! ATCTATGGTATATATCCAAA+CGG + tig0020603:46963-46982 Msa1383530:intron 25.0%
! TTATGATAAGATGTCATGTT+TGG + tig0020603:47294-47313 Msa1383530:intron 25.0%
! ATATGTATAGTTAACACAGA+TGG - tig0020603:47343-47362 None:intergenic 25.0%
!! GCAATTGAAATGTTTTCTTT+GGG - tig0020603:47984-48003 None:intergenic 25.0%
!! TGCAATTGAAATGTTTTCTT+TGG - tig0020603:47985-48004 None:intergenic 25.0%
! TATAATGTCTATGTGCAAAT+AGG + tig0020603:48009-48028 Msa1383530:intron 25.0%
! ATAATGTCTATGTGCAAATA+GGG + tig0020603:48010-48029 Msa1383530:intron 25.0%
! ATATAGGAATGCTTACAATA+TGG + tig0020603:48558-48577 Msa1383530:intron 25.0%
! AATATGGTTCTTCACAAATT+TGG + tig0020603:48574-48593 Msa1383530:CDS 25.0%
!!! ATAAACAGTTGTTTTCTTGA+TGG - tig0020603:48785-48804 None:intergenic 25.0%
! AAAACAACTGTTTATGAACT+TGG + tig0020603:48790-48809 Msa1383530:CDS 25.0%
! AAGTATAACAAAGATGCTAA+TGG + tig0020603:48936-48955 Msa1383530:CDS 25.0%
! CATGCTTAGATTAATCTATA+AGG + tig0020603:49191-49210 Msa1383530:CDS 25.0%
! ATAAATATGAAGATTTGGGT+AGG + tig0020603:49247-49266 Msa1383530:CDS 25.0%
! GTTAATGAAAAATTCGAATG+AGG - tig0020603:49493-49512 None:intergenic 25.0%
! TTTTAAGCATGTGGTTGTAA+TGG + tig0020603:45852-45871 Msa1383530:CDS 30.0%
TGATAAAACTTGGATCATTC+TGG + tig0020603:45888-45907 Msa1383530:CDS 30.0%
! AATGATATATAGGGGTTGAT+TGG + tig0020603:46098-46117 Msa1383530:intron 30.0%
! GTGTATTTGAGCTTGTTTAT+TGG + tig0020603:46125-46144 Msa1383530:intron 30.0%
!! AAGTTTTGTGATACTGATGT+CGG + tig0020603:46151-46170 Msa1383530:intron 30.0%
TAAGATATATAGGGTCTGAT+TGG + tig0020603:46404-46423 Msa1383530:intron 30.0%
GCATATTTGAGCTTATTTAC+TGG + tig0020603:46431-46450 Msa1383530:intron 30.0%
!! ATAAGTTTTGTGACACAGTT+TGG + tig0020603:46455-46474 Msa1383530:intron 30.0%
ATTTAACTGATAAGCACTTG+TGG + tig0020603:46554-46573 Msa1383530:intron 30.0%
ATGACAACTAACTACAACTA+TGG - tig0020603:46615-46634 None:intergenic 30.0%
TAGTTGTAGTTAGTTGTCAT+TGG + tig0020603:46615-46634 Msa1383530:intron 30.0%
! CAATCTAGGGTTTATTACTT+TGG + tig0020603:46695-46714 Msa1383530:intron 30.0%
GAGCTTATTTGCTTATGTTA+TGG + tig0020603:46730-46749 Msa1383530:intron 30.0%
GCTGTTAAGTTATGAATCTA+TGG + tig0020603:46948-46967 Msa1383530:intron 30.0%
TCTATGGTATATATCCAAAC+GGG + tig0020603:46964-46983 Msa1383530:intron 30.0%
TCACATAAGTTAATGACAGA+AGG - tig0020603:47102-47121 None:intergenic 30.0%
TGCTTTCATATGCACAAATT+TGG - tig0020603:47137-47156 None:intergenic 30.0%
AAGCAAATTCTATCGTTCTT+TGG + tig0020603:47152-47171 Msa1383530:intron 30.0%
AGCAAATTCTATCGTTCTTT+GGG + tig0020603:47153-47172 Msa1383530:intron 30.0%
TTCTTCACTCTTATGAACTA+TGG + tig0020603:47248-47267 Msa1383530:intron 30.0%
AAAGGCTGTAGATTTCAAAA+AGG + tig0020603:47439-47458 Msa1383530:intron 30.0%
TTAAATATTGAATGCCAGCT+TGG - tig0020603:47630-47649 None:intergenic 30.0%
TATTATGCTGATCAAGTAGA+AGG + tig0020603:47729-47748 Msa1383530:intron 30.0%
ATTAGAGAAAAGTCGATGTA+AGG + tig0020603:47883-47902 Msa1383530:intron 30.0%
! ATGTTATTGATAACACTGGT+AGG + tig0020603:48202-48221 Msa1383530:intron 30.0%
! TGTTATTGATAACACTGGTA+GGG + tig0020603:48203-48222 Msa1383530:intron 30.0%
TGCATCTACCATCTAATTAT+TGG - tig0020603:48314-48333 None:intergenic 30.0%
CATCTTTATCTTGTGGATAT+AGG + tig0020603:48542-48561 Msa1383530:intron 30.0%
TCTGTTTAATTCTTCCAGAA+AGG - tig0020603:48686-48705 None:intergenic 30.0%
TGGAAGAATTAAACAGAAAG+TGG + tig0020603:48689-48708 Msa1383530:CDS 30.0%
GGAAGAATTAAACAGAAAGT+GGG + tig0020603:48690-48709 Msa1383530:CDS 30.0%
! TCATTTGTAATGCCTTATTG+TGG - tig0020603:48720-48739 None:intergenic 30.0%
TTCTTCATTCAAACCAGATA+AGG + tig0020603:48836-48855 Msa1383530:CDS 30.0%
!! ACAAAGATGCTAATGGATTT+AGG + tig0020603:48943-48962 Msa1383530:CDS 30.0%
ATTTAGGTCCTTCTGTTTAT+GGG + tig0020603:48959-48978 Msa1383530:CDS 30.0%
TTAATCTATAAGGAGTCTTC+TGG + tig0020603:49201-49220 Msa1383530:CDS 30.0%
TAATCTATAAGGAGTCTTCT+GGG + tig0020603:49202-49221 Msa1383530:CDS 30.0%
CAATTTACCGCAAAATTAGA+GGG + tig0020603:49768-49787 Msa1383530:CDS 30.0%
!!! CAGACTTAAAAGCTACTTTT+GGG + tig0020603:50033-50052 Msa1383530:CDS 30.0%
ACACATTCTATGTTAATGAC+AGG + tig0020603:50267-50286 Msa1383530:CDS 30.0%
! AATTGGTAAGCTTGTTTGTT+TGG + tig0020603:50602-50621 Msa1383530:three_prime_UTR 30.0%
! ATTGGTAAGCTTGTTTGTTT+GGG + tig0020603:50603-50622 Msa1383530:three_prime_UTR 30.0%
GTCAAAAATAGCTGATACAT+TGG + tig0020603:50665-50684 Msa1383530:three_prime_UTR 30.0%
TAAGTAGAAATGAGTGTAGT+TGG - tig0020603:50783-50802 None:intergenic 30.0%
!! ACTTATACTACAAGTTGATG+TGG + tig0020603:50798-50817 Msa1383530:three_prime_UTR 30.0%
!! CTTATACTACAAGTTGATGT+GGG + tig0020603:50799-50818 Msa1383530:three_prime_UTR 30.0%
!! TTATACTACAAGTTGATGTG+GGG + tig0020603:50800-50819 Msa1383530:three_prime_UTR 30.0%
! ATGGTGGCAATTTTTCTGTT+TGG - tig0020603:45592-45611 None:intergenic 35.0%
!! TTTGAGTTGAGAGAAAATGG+TGG - tig0020603:45608-45627 None:intergenic 35.0%
!!! GCTTTTGAGTTGAGAGAAAA+TGG - tig0020603:45611-45630 None:intergenic 35.0%
!! CAAGTTTTATCACCATACCT+CGG - tig0020603:45880-45899 None:intergenic 35.0%
!! TTAGCTTTGAAGAGCTTTAC+AGG + tig0020603:45953-45972 Msa1383530:CDS 35.0%
! TATATAGGGGTTGATTGGAT+TGG + tig0020603:46103-46122 Msa1383530:intron 35.0%
TATATAGGGTCTGATTGGAT+TGG + tig0020603:46409-46428 Msa1383530:intron 35.0%
TAAGTTAATGACAGAAGGCA+AGG - tig0020603:47097-47116 None:intergenic 35.0%
GACACGCATGTCATAATATA+AGG - tig0020603:47213-47232 None:intergenic 35.0%
! TTGTTAAGTCCCTGTTTTCT+TGG + tig0020603:47379-47398 Msa1383530:intron 35.0%
AAACTCCAACCAAGAAAACA+GGG - tig0020603:47391-47410 None:intergenic 35.0%
AAAACTCCAACCAAGAAAAC+AGG - tig0020603:47392-47411 None:intergenic 35.0%
AAGTGACATGATTATGAGTC+AGG + tig0020603:47550-47569 Msa1383530:intron 35.0%
AAAAAGTTAATTGCTAGGCC+TGG - tig0020603:47578-47597 None:intergenic 35.0%
TTAGGAATGTTGTGTGAATG+AGG - tig0020603:47670-47689 None:intergenic 35.0%
!! CAGCACTTTTTAACAACACT+GGG - tig0020603:48042-48061 None:intergenic 35.0%
!! TCAGCACTTTTTAACAACAC+TGG - tig0020603:48043-48062 None:intergenic 35.0%
! CTGCATGTTATTGATAACAC+TGG + tig0020603:48198-48217 Msa1383530:intron 35.0%
GAGAGGACAATAATGAAAGT+AGG - tig0020603:48371-48390 None:intergenic 35.0%
TTTGATGTGCACGTATCAAT+AGG - tig0020603:48468-48487 None:intergenic 35.0%
ATTGATACGTGCACATCAAA+TGG + tig0020603:48468-48487 Msa1383530:intron 35.0%
TAGAGACATTCTGATGTACA+TGG + tig0020603:48741-48760 Msa1383530:CDS 35.0%
!! CAGTTGTTTTCTTGATGGTT+TGG - tig0020603:48780-48799 None:intergenic 35.0%
! TCGACTGTTGAATATGCTTT+TGG + tig0020603:48861-48880 Msa1383530:CDS 35.0%
GATTTAGGTCCTTCTGTTTA+TGG + tig0020603:48958-48977 Msa1383530:CDS 35.0%
TTTAGGTCCTTCTGTTTATG+GGG + tig0020603:48960-48979 Msa1383530:CDS 35.0%
AATTCTTCCCCATAAACAGA+AGG - tig0020603:48970-48989 None:intergenic 35.0%
AAGCTTCAACTGAGTTCTAT+AGG + tig0020603:49007-49026 Msa1383530:CDS 35.0%
AGCTTCAACTGAGTTCTATA+GGG + tig0020603:49008-49027 Msa1383530:CDS 35.0%
! CAGATATTTATTGAGTGCTG+TGG + tig0020603:49039-49058 Msa1383530:CDS 35.0%
TAATCTTCGTTTCAGTTCCA+GGG - tig0020603:49137-49156 None:intergenic 35.0%
TGAAACGAAGATTACTACTC+TGG + tig0020603:49143-49162 Msa1383530:CDS 35.0%
ACTTCATACGTCAAAGACTA+CGG + tig0020603:49327-49346 Msa1383530:CDS 35.0%
ATGAGGAATTCAGATCTTTC+AGG - tig0020603:49476-49495 None:intergenic 35.0%
!! TGAAATGTACTCTGGAATAC+GGG - tig0020603:49523-49542 None:intergenic 35.0%
!! GTGAAATGTACTCTGGAATA+CGG - tig0020603:49524-49543 None:intergenic 35.0%
ACAAAGAGTGAAATGTACTC+TGG - tig0020603:49531-49550 None:intergenic 35.0%
TAAGCTTCGAAAAGGTCTAA+AGG + tig0020603:49557-49576 Msa1383530:CDS 35.0%
AAGCTTCGAAAAGGTCTAAA+GGG + tig0020603:49558-49577 Msa1383530:CDS 35.0%
TAGAACCATAACCTTGTCAA+GGG - tig0020603:49610-49629 None:intergenic 35.0%
ATAGAACCATAACCTTGTCA+AGG - tig0020603:49611-49630 None:intergenic 35.0%
! ACAAGGTTATGGTTCTATTC+CGG + tig0020603:49613-49632 Msa1383530:CDS 35.0%
! CATCTTTTTCCTGCAAATAC+CGG - tig0020603:49635-49654 None:intergenic 35.0%
! CCTCTAATTTTGCGGTAAAT+TGG - tig0020603:49770-49789 None:intergenic 35.0%
CCAATTTACCGCAAAATTAG+AGG + tig0020603:49767-49786 Msa1383530:CDS 35.0%
! AAACATGCCCTCTAATTTTG+CGG - tig0020603:49778-49797 None:intergenic 35.0%
ATTGACGTGGCAAACTAATA+TGG + tig0020603:50004-50023 Msa1383530:CDS 35.0%
TTGACGTGGCAAACTAATAT+GGG + tig0020603:50005-50024 Msa1383530:CDS 35.0%
!! GCAGACTTAAAAGCTACTTT+TGG + tig0020603:50032-50051 Msa1383530:CDS 35.0%
!!! TTAAAAGCTACTTTTGGGAG+TGG + tig0020603:50038-50057 Msa1383530:CDS 35.0%
CATGAGTACACACATTTGAT+AGG - tig0020603:50090-50109 None:intergenic 35.0%
!! CAATCATTGGCTTTGGTTAA+GGG + tig0020603:50194-50213 Msa1383530:CDS 35.0%
TTAAGGGAAGAAATGTCCTT+AGG + tig0020603:50210-50229 Msa1383530:CDS 35.0%
TGTTGTTGCACAAAAGGAAT+CGG + tig0020603:50325-50344 Msa1383530:CDS 35.0%
ACTGGATACTCAACAAAAAG+TGG + tig0020603:50358-50377 Msa1383530:CDS 35.0%
TAGTGAGGATTATGAAATCC+AGG + tig0020603:50414-50433 Msa1383530:CDS 35.0%
ACTTGAGCACAACAATCTTA+TGG + tig0020603:50442-50461 Msa1383530:CDS 35.0%
TTCTTTACATCCGTTGGATT+TGG - tig0020603:50503-50522 None:intergenic 35.0%
ATCCAACGGATGTAAAGAAA+CGG + tig0020603:50504-50523 Msa1383530:CDS 35.0%
ATCGATATCTTGCCTAGAAT+TGG + tig0020603:50585-50604 Msa1383530:exon 35.0%
CAAACAAGCTTACCAATTCT+AGG - tig0020603:50600-50619 None:intergenic 35.0%
AATGTTGTGTCTTGTGAACT+AGG + tig0020603:50643-50662 Msa1383530:three_prime_UTR 35.0%
GAGGAAGACATTAATGTGAT+AGG - tig0020603:50761-50780 None:intergenic 35.0%
AGAAGAAGATGAGTAACCCA+AGG + tig0020603:45806-45825 Msa1383530:exon 40.0%
! AAGAGGAATTTTCGCGTTGA+GGG + tig0020603:45829-45848 Msa1383530:CDS 40.0%
CGAGGTATGGTGATAAAACT+TGG + tig0020603:45878-45897 Msa1383530:CDS 40.0%
ACTACAACTATGGCGATGTT+TGG - tig0020603:46605-46624 None:intergenic 40.0%
! TAATGGTCAAATTGGTGCCT+AGG + tig0020603:46658-46677 Msa1383530:intron 40.0%
! GTTCTTTGGGTTTACACGTA+GGG + tig0020603:47166-47185 Msa1383530:intron 40.0%
! TTCTTTGGGTTTACACGTAG+GGG + tig0020603:47167-47186 Msa1383530:intron 40.0%
! ACTATGGTTAGCTGTGTTAG+TGG + tig0020603:47264-47283 Msa1383530:intron 40.0%
TAGTTAACACAGATGGTGAC+TGG - tig0020603:47336-47355 None:intergenic 40.0%
! TAAGTCCCTGTTTTCTTGGT+TGG + tig0020603:47383-47402 Msa1383530:intron 40.0%
ATGATTATGAGTCAGGTTCC+AGG + tig0020603:47557-47576 Msa1383530:intron 40.0%
CGTATATTTGATTGCCAAGC+TGG + tig0020603:47613-47632 Msa1383530:intron 40.0%
TACTTCCTACCTTAAGCAAC+TGG + tig0020603:47700-47719 Msa1383530:intron 40.0%
ACTTCCTACCTTAAGCAACT+GGG + tig0020603:47701-47720 Msa1383530:intron 40.0%
ATAACTCTCCCAGTTGCTTA+AGG - tig0020603:47712-47731 None:intergenic 40.0%
GCTGATCAAGTAGAAGGATA+TGG + tig0020603:47735-47754 Msa1383530:intron 40.0%
GTCTATGTGCAAATAGGGTT+AGG + tig0020603:48015-48034 Msa1383530:intron 40.0%
GCGAAACTAAGATAGCATCA+CGG - tig0020603:48112-48131 None:intergenic 40.0%
TTCTTCACAAATTTGGCGAG+AGG + tig0020603:48581-48600 Msa1383530:CDS 40.0%
AAAGTGGGATGACCACAATA+AGG + tig0020603:48705-48724 Msa1383530:CDS 40.0%
ACATTCTGATGTACATGGAC+AGG + tig0020603:48746-48765 Msa1383530:CDS 40.0%
! GAAGAACATTTTCTCTCCAC+AGG - tig0020603:48822-48841 None:intergenic 40.0%
TCCTCTATTAACAACTTCGC+CGG - tig0020603:48908-48927 None:intergenic 40.0%
TCAGTTGAAGCTTGCAGAAA+AGG - tig0020603:49000-49019 None:intergenic 40.0%
! TTTATTGAGTGCTGTGGTTC+TGG + tig0020603:49045-49064 Msa1383530:CDS 40.0%
! TTATTGAGTGCTGTGGTTCT+GGG + tig0020603:49046-49065 Msa1383530:CDS 40.0%
! TTCTGGGGATTATCTCAAGA+AGG + tig0020603:49062-49081 Msa1383530:CDS 40.0%
GTAATCTTCGTTTCAGTTCC+AGG - tig0020603:49138-49157 None:intergenic 40.0%
AACGAAGATTACTACTCTGG+TGG + tig0020603:49146-49165 Msa1383530:CDS 40.0%
!! AGCTTGTTACTGATCCTGAA+AGG + tig0020603:49355-49374 Msa1383530:CDS 40.0%
TACTGATCCTGAAAGGTTGA+AGG + tig0020603:49362-49381 Msa1383530:CDS 40.0%
ATCCTGTTGAATTTGTGCAG+AGG + tig0020603:49385-49404 Msa1383530:CDS 40.0%
!! GAAATGTACTCTGGAATACG+GGG - tig0020603:49522-49541 None:intergenic 40.0%
GTAGACGATAAGCTTCGAAA+AGG + tig0020603:49549-49568 Msa1383530:CDS 40.0%
GATTACCCTTGACAAGGTTA+TGG + tig0020603:49602-49621 Msa1383530:CDS 40.0%
GTTAAGCTGAAGACAGAATG+TGG + tig0020603:49741-49760 Msa1383530:CDS 40.0%
!! CAAAGTGCTGACATTTCTGT+CGG - tig0020603:49939-49958 None:intergenic 40.0%
CAGCACTTTGCGAGAAATTT+CGG + tig0020603:49949-49968 Msa1383530:CDS 40.0%
TATTACCTCAGCACCCATAA+TGG + tig0020603:49975-49994 Msa1383530:CDS 40.0%
CGTCAATTTCCTGCCATTAT+GGG - tig0020603:49991-50010 None:intergenic 40.0%
ACGTCAATTTCCTGCCATTA+TGG - tig0020603:49992-50011 None:intergenic 40.0%
ATAATGGCAGGAAATTGACG+TGG + tig0020603:49991-50010 Msa1383530:CDS 40.0%
GAGTACACACATTTGATAGG+TGG - tig0020603:50087-50106 None:intergenic 40.0%
TGCTGATAGACTAAGCTACA+AGG + tig0020603:50121-50140 Msa1383530:CDS 40.0%
TTCCAGCATCAGATTTGAAG+AGG + tig0020603:50165-50184 Msa1383530:CDS 40.0%
TAACCAAAGCCAATGATTGC+AGG - tig0020603:50193-50212 None:intergenic 40.0%
!! GCAATCATTGGCTTTGGTTA+AGG + tig0020603:50193-50212 Msa1383530:CDS 40.0%
AGGAACTGTTGTTGCACAAA+AGG + tig0020603:50319-50338 Msa1383530:CDS 40.0%
GGATACTCAACAAAAAGTGG+AGG + tig0020603:50361-50380 Msa1383530:CDS 40.0%
TACTCAACAAAAAGTGGAGG+AGG + tig0020603:50364-50383 Msa1383530:CDS 40.0%
AACAAAAAGTGGAGGAGGAT+CGG + tig0020603:50369-50388 Msa1383530:CDS 40.0%
! ACTATTGCTGCTTCAATCTG+GGG - tig0020603:50398-50417 None:intergenic 40.0%
! CACTATTGCTGCTTCAATCT+GGG - tig0020603:50399-50418 None:intergenic 40.0%
! TCACTATTGCTGCTTCAATC+TGG - tig0020603:50400-50419 None:intergenic 40.0%
AGATTGAAGCAGCAATAGTG+AGG + tig0020603:50399-50418 Msa1383530:CDS 40.0%
TTACATCCGTTGGATTTGGA+AGG - tig0020603:50499-50518 None:intergenic 40.0%
ATCCGTTTCTTTACATCCGT+TGG - tig0020603:50509-50528 None:intergenic 40.0%
TTTCCAAAAATTCCCGCTCA+AGG - tig0020603:50541-50560 None:intergenic 40.0%
! GTAAGCTTGTTTGTTTGGGT+AGG + tig0020603:50607-50626 Msa1383530:three_prime_UTR 40.0%
GTAGAAATGAGTGTAGTTGG+AGG - tig0020603:50780-50799 None:intergenic 40.0%
AGATGAGTAACCCAAGGAAG+AGG + tig0020603:45812-45831 Msa1383530:exon 45.0%
CGCGAAAATTCCTCTTCCTT+GGG - tig0020603:45825-45844 None:intergenic 45.0%
ACGCGAAAATTCCTCTTCCT+TGG - tig0020603:45826-45845 None:intergenic 45.0%
! GAAGAGGAATTTTCGCGTTG+AGG + tig0020603:45828-45847 Msa1383530:CDS 45.0%
!!! CGTTGAGGGTTTTAAGCATG+TGG + tig0020603:45843-45862 Msa1383530:CDS 45.0%
!! ATGTGGTTGTAATGGATCCG+AGG + tig0020603:45860-45879 Msa1383530:CDS 45.0%
!! GTTGTAATGGATCCGAGGTA+TGG + tig0020603:45865-45884 Msa1383530:CDS 45.0%
TGATACTGATGTCGGTCCTT+GGG + tig0020603:46159-46178 Msa1383530:intron 45.0%
AAAACTCGGTATCAGACCCA+AGG - tig0020603:46178-46197 None:intergenic 45.0%
TCATAGTAGCTGATCCCGTT+TGG - tig0020603:46981-47000 None:intergenic 45.0%
! CGTTCTTTGGGTTTACACGT+AGG + tig0020603:47165-47184 Msa1383530:intron 45.0%
!! CAATGATGGCTTGCTACAGA+AGG - tig0020603:47416-47435 None:intergenic 45.0%
TTGGAGATGAGAAGTCATGG+TGG - tig0020603:48626-48645 None:intergenic 45.0%
CTCTTGGAGATGAGAAGTCA+TGG - tig0020603:48629-48648 None:intergenic 45.0%
GACTTCTCATCTCCAAGAGA+TGG + tig0020603:48630-48649 Msa1383530:CDS 45.0%
CAACAGATCTAGCCATCTCT+TGG - tig0020603:48645-48664 None:intergenic 45.0%
AGATCTGTTGAAGCCACTCA+AGG + tig0020603:48655-48674 Msa1383530:CDS 45.0%
CAGAAAGGAACTTCCTTGAG+TGG - tig0020603:48671-48690 None:intergenic 45.0%
CACTCAAGGAAGTTCCTTTC+TGG + tig0020603:48669-48688 Msa1383530:CDS 45.0%
ATGAACTTGGTCAGAACCTG+TGG + tig0020603:48803-48822 Msa1383530:CDS 45.0%
TCAACAGTCGAGTCCTTATC+TGG - tig0020603:48852-48871 None:intergenic 45.0%
TTAGTACACAGTGAGCGTAC+CGG + tig0020603:48886-48905 Msa1383530:CDS 45.0%
ACCGGCGAAGTTGTTAATAG+AGG + tig0020603:48904-48923 Msa1383530:CDS 45.0%
! TATTGAGTGCTGTGGTTCTG+GGG + tig0020603:49047-49066 Msa1383530:CDS 45.0%
TGATAGAGTGAGCCACTACT+TGG + tig0020603:49110-49129 Msa1383530:CDS 45.0%
GATTACTACTCTGGTGGAGA+AGG + tig0020603:49152-49171 Msa1383530:CDS 45.0%
! AACTTGTTCAGTCGTGTCAC+CGG + tig0020603:49276-49295 Msa1383530:CDS 45.0%
!! ACGTATTTTCGAGAGACCAC+CGG - tig0020603:49298-49317 None:intergenic 45.0%
ACAGGATCCTTCAACCTTTC+AGG - tig0020603:49372-49391 None:intergenic 45.0%
AGCCTCTGCACAAATTCAAC+AGG - tig0020603:49390-49409 None:intergenic 45.0%
TGCAGAGATTACCCTTGACA+AGG + tig0020603:49596-49615 Msa1383530:CDS 45.0%
GGTTCTATTCCGGTATTTGC+AGG + tig0020603:49623-49642 Msa1383530:CDS 45.0%
! CAGTTTCTGATGATGCTGAG+AGG + tig0020603:49709-49728 Msa1383530:CDS 45.0%
AGAACCTGCACAGTTAGTGT+AGG - tig0020603:49870-49889 None:intergenic 45.0%
CATGTCACACTAGATTGAGC+TGG - tig0020603:49909-49928 None:intergenic 45.0%
CACCTCTTCAAATCTGATGC+TGG - tig0020603:50170-50189 None:intergenic 45.0%
GGGAAGAAATGTCCTTAGGA+AGG + tig0020603:50214-50233 Msa1383530:CDS 45.0%
TCGCAAACATCTTTACCCAC+AGG - tig0020603:50242-50261 None:intergenic 45.0%
TGTGGGTAAAGATGTTTGCG+AGG + tig0020603:50241-50260 Msa1383530:CDS 45.0%
TGCACAAAAGGAATCGGAAC+TGG + tig0020603:50331-50350 Msa1383530:CDS 45.0%
GCACAACAATCTTATGGCTG+AGG + tig0020603:50448-50467 Msa1383530:CDS 45.0%
GCGATTCCTTCCAAATCCAA+CGG + tig0020603:50490-50509 Msa1383530:CDS 45.0%
! TCTCCTTGAGCGGGAATTTT+TGG + tig0020603:50535-50554 Msa1383530:CDS 45.0%
GTGATACTGATGTCGGTCCT+TGG + tig0020603:46158-46177 Msa1383530:intron 50.0%
GTTATGGCGTAAGCGCTATC+TGG + tig0020603:46746-46765 Msa1383530:intron 50.0%
AGCAAGCCATCATTGCGCAA+AGG + tig0020603:47421-47440 Msa1383530:intron 50.0%
CTACAGCCTTTGCGCAATGA+TGG - tig0020603:47430-47449 None:intergenic 50.0%
CTCTCCCAGTTGCTTAAGGT+AGG - tig0020603:47708-47727 None:intergenic 50.0%
!! AAGTGCTGATAGCAGCGCTA+TGG + tig0020603:48054-48073 Msa1383530:intron 50.0%
GATGGTAGATGCACAAGCTG+TGG + tig0020603:48321-48340 Msa1383530:intron 50.0%
GTAGATGCACAAGCTGTGGT+TGG + tig0020603:48325-48344 Msa1383530:intron 50.0%
TTTGGCGAGAGGCTATACTC+TGG + tig0020603:48592-48611 Msa1383530:CDS 50.0%
TTGGCGAGAGGCTATACTCT+GGG + tig0020603:48593-48612 Msa1383530:CDS 50.0%
TACTCTGGTGGAGAAGGAGA+TGG + tig0020603:49158-49177 Msa1383530:CDS 50.0%
ACAAGCAGCACCTTGCAAAG+CGG + tig0020603:49670-49689 Msa1383530:CDS 50.0%
! CAGACAAAAGCCGCTTTGCA+AGG - tig0020603:49683-49702 None:intergenic 50.0%
! CTTGCAAAGCGGCTTTTGTC+TGG + tig0020603:49681-49700 Msa1383530:CDS 50.0%
TAGGACCATCGCCTAACTCA+GGG - tig0020603:49851-49870 None:intergenic 50.0%
TGGTCCTACACTAACTGTGC+AGG + tig0020603:49863-49882 Msa1383530:CDS 50.0%
! ACTGTGCAGGTTCTGACAAC+AGG + tig0020603:49876-49895 Msa1383530:CDS 50.0%
! CTGTGCAGGTTCTGACAACA+GGG + tig0020603:49877-49896 Msa1383530:CDS 50.0%
! AGGTTCTGACAACAGGGTCT+TGG + tig0020603:49883-49902 Msa1383530:CDS 50.0%
! GTGCTGACATTTCTGTCGGA+AGG - tig0020603:49935-49954 None:intergenic 50.0%
!! GAAGAGGTGCCTGCAATCAT+TGG + tig0020603:50181-50200 Msa1383530:CDS 50.0%
!! GTGCCTGCAATCATTGGCTT+TGG + tig0020603:50187-50206 Msa1383530:CDS 50.0%
GGAATCGGAACTGGAGAAAC+TGG + tig0020603:50340-50359 Msa1383530:CDS 50.0%
! GTTGTGCTCAAGTTGCTTCC+TGG - tig0020603:50435-50454 None:intergenic 50.0%
GGATTGAGTCTCTCCTTGAG+CGG + tig0020603:50525-50544 Msa1383530:CDS 50.0%
GATTGAGTCTCTCCTTGAGC+GGG + tig0020603:50526-50545 Msa1383530:CDS 50.0%
GGCTGAGATGCGTCTGAATG+AGG + tig0020603:49083-49102 Msa1383530:CDS 55.0%
CAGTTCCAGGGTCCAAGTAG+TGG - tig0020603:49125-49144 None:intergenic 55.0%
TTGTTCAGTCGTGTCACCGG+TGG + tig0020603:49279-49298 Msa1383530:CDS 55.0%
AATGCCGACCACCCTGAGTT+AGG + tig0020603:49837-49856 Msa1383530:CDS 55.0%
ATCGCCTAACTCAGGGTGGT+CGG - tig0020603:49844-49863 None:intergenic 55.0%
GTAGGACCATCGCCTAACTC+AGG - tig0020603:49852-49871 None:intergenic 55.0%
ACCTCAGCACCCATAATGGC+AGG + tig0020603:49979-49998 Msa1383530:CDS 55.0%
! TCCTGCCATTATGGGTGCTG+AGG - tig0020603:49983-50002 None:intergenic 55.0%
TGTCCTTAGGAAGGAGCCTG+TGG + tig0020603:50223-50242 Msa1383530:CDS 55.0%
GTCCTTAGGAAGGAGCCTGT+GGG + tig0020603:50224-50243 Msa1383530:CDS 55.0%
TACCCACAGGCTCCTTCCTA+AGG - tig0020603:50229-50248 None:intergenic 55.0%
CGAGAGGCTATACTCTGGGC+TGG + tig0020603:48597-48616 Msa1383530:CDS 60.0%
GTGAGCCACTACTTGGACCC+TGG + tig0020603:49117-49136 Msa1383530:CDS 60.0%
GACCACCCTGAGTTAGGCGA+TGG + tig0020603:49843-49862 Msa1383530:CDS 60.0%
GACCATCGCCTAACTCAGGG+TGG - tig0020603:49848-49867 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0020603 gene 45589 50846 45589 ID=Msa1383530;Name=Msa1383530
tig0020603 mRNA 45589 50846 45589 ID=Msa1383530-mRNA-1;Parent=Msa1383530;Name=Msa1383530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=102|1|1|1|0.5|0.33|3|245|732
tig0020603 exon 45589 45659 45589 ID=Msa1383530-mRNA-1:exon:8606;Parent=Msa1383530-mRNA-1
tig0020603 exon 45783 45974 45783 ID=Msa1383530-mRNA-1:exon:8607;Parent=Msa1383530-mRNA-1
tig0020603 exon 48564 50846 48564 ID=Msa1383530-mRNA-1:exon:8608;Parent=Msa1383530-mRNA-1
tig0020603 five_prime_UTR 45589 45659 45589 ID=Msa1383530-mRNA-1:five_prime_utr;Parent=Msa1383530-mRNA-1
tig0020603 five_prime_UTR 45783 45813 45783 ID=Msa1383530-mRNA-1:five_prime_utr;Parent=Msa1383530-mRNA-1
tig0020603 CDS 45814 45974 45814 ID=Msa1383530-mRNA-1:cds;Parent=Msa1383530-mRNA-1
tig0020603 CDS 48564 50601 48564 ID=Msa1383530-mRNA-1:cds;Parent=Msa1383530-mRNA-1
tig0020603 three_prime_UTR 50602 50846 50602 ID=Msa1383530-mRNA-1:three_prime_utr;Parent=Msa1383530-mRNA-1
Gene Sequence

>Msa1383530

ATGAGTAACCCAAGGAAGAGGAATTTTCGCGTTGAGGGTTTTAAGCATGTGGTTGTAATGGATCCGAGGTATGGTGATAAAACTTGGATCATTCTGGAGAATGCTATTCATCAGATTTATGATCATAATGCTAGTGGACTTAGCTTTGAAGAGCTTTACAGGAATGCTTACAATATGGTTCTTCACAAATTTGGCGAGAGGCTATACTCTGGGCTGGTTGCCACCATGACTTCTCATCTCCAAGAGATGGCTAGATCTGTTGAAGCCACTCAAGGAAGTTCCTTTCTGGAAGAATTAAACAGAAAGTGGGATGACCACAATAAGGCATTACAAATGATTAGAGACATTCTGATGTACATGGACAGGACTTATATCCAAACCATCAAGAAAACAACTGTTTATGAACTTGGTCAGAACCTGTGGAGAGAAAATGTTCTTCATTCAAACCAGATAAGGACTCGACTGTTGAATATGCTTTTGGAATTAGTACACAGTGAGCGTACCGGCGAAGTTGTTAATAGAGGACTGATTAGAAGTATAACAAAGATGCTAATGGATTTAGGTCCTTCTGTTTATGGGGAAGAATTTGAGAATCCTTTTCTGCAAGCTTCAACTGAGTTCTATAGGGCTGAATCACAGATATTTATTGAGTGCTGTGGTTCTGGGGATTATCTCAAGAAGGCTGAGATGCGTCTGAATGAGGAACTTGATAGAGTGAGCCACTACTTGGACCCTGGAACTGAAACGAAGATTACTACTCTGGTGGAGAAGGAGATGGTCGAAAATCACATGCTTAGATTAATCTATAAGGAGTCTTCTGGGTTAGTAAACATGCTTCGTGATGATAAATATGAAGATTTGGGTAGGATGTATAACTTGTTCAGTCGTGTCACCGGTGGTCTCTCGAAAATACGTGAAGTGATGACTTCATACGTCAAAGACTACGGTAAGCAGCTTGTTACTGATCCTGAAAGGTTGAAGGATCCTGTTGAATTTGTGCAGAGGCTCTCAGATGTGAAAGATAAATTCAACAAGATTATAGATTTGGCATTTAGTAATGACAAGTTGTTCCTGAAAGATCTGAATTCCTCATTCGAATTTTTCATTAACTTGAATCCCCGTATTCCAGAGTACATTTCACTCTTTGTAGACGATAAGCTTCGAAAAGGTCTAAAGGGAGTTAGTGAGGATGTTGCAGAGATTACCCTTGACAAGGTTATGGTTCTATTCCGGTATTTGCAGGAAAAAGATGTGTTTGAGAAGTATTACAAGCAGCACCTTGCAAAGCGGCTTTTGTCTGGAAAAACAGTTTCTGATGATGCTGAGAGGAGTCTCATAGTTAAGCTGAAGACAGAATGTGGATTCCAATTTACCGCAAAATTAGAGGGCATGTTTACAGACATGAAAACATCTGTAGACACGATGAAGAGCTTTAATGCCGACCACCCTGAGTTAGGCGATGGTCCTACACTAACTGTGCAGGTTCTGACAACAGGGTCTTGGCCAGCTCAATCTAGTGTGACATGTAACCTTCCGACAGAAATGTCAGCACTTTGCGAGAAATTTCGGTCATATTACCTCAGCACCCATAATGGCAGGAAATTGACGTGGCAAACTAATATGGGCACAGCAGACTTAAAAGCTACTTTTGGGAGTGGTCAGAAACATGAGTTAAATGTCTCCACCTATCAAATGTGTGTACTCATGCTGTTTAATAATGCTGATAGACTAAGCTACAAGGAAATTGAGCAAGCAACTGAGATTCCAGCATCAGATTTGAAGAGGTGCCTGCAATCATTGGCTTTGGTTAAGGGAAGAAATGTCCTTAGGAAGGAGCCTGTGGGTAAAGATGTTTGCGAGGATGACACATTCTATGTTAATGACAGGTTTAGCAGCAAACTGTATAAGATAAAAATAGGAACTGTTGTTGCACAAAAGGAATCGGAACTGGAGAAACTGGATACTCAACAAAAAGTGGAGGAGGATCGGAAGCCCCAGATTGAAGCAGCAATAGTGAGGATTATGAAATCCAGGAAGCAACTTGAGCACAACAATCTTATGGCTGAGGTCACACAGCAGTTGCAGTCGCGATTCCTTCCAAATCCAACGGATGTAAAGAAACGGATTGAGTCTCTCCTTGAGCGGGAATTTTTGGAAAGAGATGCTGTTGACAGAAAACTGTATCGATATCTTGCCTAG

Protein sequence

>Msa1383530

MSNPRKRNFRVEGFKHVVVMDPRYGDKTWIILENAIHQIYDHNASGLSFEELYRNAYNMVLHKFGERLYSGLVATMTSHLQEMARSVEATQGSSFLEELNRKWDDHNKALQMIRDILMYMDRTYIQTIKKTTVYELGQNLWRENVLHSNQIRTRLLNMLLELVHSERTGEVVNRGLIRSITKMLMDLGPSVYGEEFENPFLQASTEFYRAESQIFIECCGSGDYLKKAEMRLNEELDRVSHYLDPGTETKITTLVEKEMVENHMLRLIYKESSGLVNMLRDDKYEDLGRMYNLFSRVTGGLSKIREVMTSYVKDYGKQLVTDPERLKDPVEFVQRLSDVKDKFNKIIDLAFSNDKLFLKDLNSSFEFFINLNPRIPEYISLFVDDKLRKGLKGVSEDVAEITLDKVMVLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGFQFTAKLEGMFTDMKTSVDTMKSFNADHPELGDGPTLTVQVLTTGSWPAQSSVTCNLPTEMSALCEKFRSYYLSTHNGRKLTWQTNMGTADLKATFGSGQKHELNVSTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPVGKDVCEDDTFYVNDRFSSKLYKIKIGTVVAQKESELEKLDTQQKVEEDRKPQIEAAIVRIMKSRKQLEHNNLMAEVTQQLQSRFLPNPTDVKKRIESLLEREFLERDAVDRKLYRYLA*