AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372810 MtrunA17_Chr5g0416711 95.492 732 33 0 1 732 1 732 0.0 1449
Msa0372810 MtrunA17_Chr8g0361901 80.874 732 139 1 1 732 1 731 0.0 1241
Msa0372810 MtrunA17_Chr1g0166181 77.931 725 154 3 11 732 18 739 0.0 1162
Msa0372810 MtrunA17_Chr1g0166131 77.241 725 159 3 11 732 19 740 0.0 1137
Msa0372810 MtrunA17_Chr6g0453061 71.193 729 209 1 5 732 2 730 0.0 1095
Msa0372810 MtrunA17_Chr6g0453081 68.313 729 230 1 5 732 2 730 0.0 1042
Msa0372810 MtrunA17_Chr7g0231701 75.441 680 156 2 53 732 40 708 0.0 1042
Msa0372810 MtrunA17_Chr1g0166141 78.930 598 124 1 137 732 77 674 0.0 971
Msa0372810 MtrunA17_Chr1g0166141 82.895 76 13 0 278 353 1 76 3.92e-33 136
Msa0372810 MtrunA17_Chr7g0231741 97.067 375 11 0 358 732 1 375 0.0 757
Msa0372810 MtrunA17_Chr7g0231751 92.903 310 22 0 1 310 1 310 0.0 597
Msa0372810 MtrunA17_Chr5g0416731 66.184 414 95 2 53 421 25 438 0.0 529
Msa0372810 MtrunA17_Chr2g0285881 41.201 716 400 12 24 732 91 792 5.68e-172 513
Msa0372810 MtrunA17_Chr5g0416831 73.006 326 51 2 407 732 1 289 5.14e-165 476
Msa0372810 MtrunA17_Chr5g0416691 58.065 403 163 3 332 732 3 401 4.86e-164 478
Msa0372810 MtrunA17_Chr7g0231791 57.816 403 164 3 332 732 3 401 7.26e-162 473
Msa0372810 MtrunA17_Chr7g0231721 70.213 329 91 2 53 380 25 347 3.83e-156 456
Msa0372810 MtrunA17_Chr5g0416901 66.877 317 104 1 55 371 21 336 7.07e-144 425
Msa0372810 MtrunA17_Chr7g0231581 66.134 313 105 1 59 371 1 312 1.56e-140 415
Msa0372810 MtrunA17_Chr2g0296381 34.153 732 439 15 32 732 23 742 6.29e-125 389
Msa0372810 MtrunA17_Chr4g0067011 33.653 731 444 14 32 732 25 744 5.94e-121 379
Msa0372810 MtrunA17_Chr7g0231571 69.106 246 75 1 59 304 1 245 3.26e-111 337
Msa0372810 MtrunA17_Chr5g0416911 67.200 250 81 1 55 304 5 253 4.28e-109 332
Msa0372810 MtrunA17_Chr1g0166151 70.109 184 54 1 83 266 1 183 4.04e-83 261
Msa0372810 MtrunA17_Chr7g0268881 40.150 401 210 9 347 732 4 389 6.41e-81 263
Msa0372810 MtrunA17_Chr7g0231801 51.394 251 120 2 59 307 1 251 9.81e-77 247
Msa0372810 MtrunA17_Chr5g0416681 51.394 251 120 2 59 307 1 251 4.27e-76 245
Msa0372810 MtrunA17_Chr5g0416931 70.909 165 48 0 53 217 38 202 2.03e-75 242
Msa0372810 MtrunA17_Chr7g0231561 68.944 161 50 0 59 219 1 161 4.26e-72 231
Msa0372810 MtrunA17_Chr5g0416841 70.526 95 28 0 203 297 10 104 1.99e-39 140
Msa0372810 MtrunA17_Chr7g0268891 27.742 310 207 5 26 320 9 316 1.29e-34 135
Msa0372810 MtrunA17_Chr7g0231711 68.519 54 16 1 1 54 1 53 1.28e-17 77.8
Msa0372810 MtrunA17_Chr5g0416721 61.111 54 21 0 1 54 1 54 2.11e-16 73.9
Msa0372810 MtrunA17_Chr7g0231731 59.259 54 22 0 1 54 1 54 3.83e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372810 AT1G26830.1 74.180 732 189 0 1 732 1 732 0.0 1165
Msa0372810 AT1G69670.1 72.268 732 203 0 1 732 1 732 0.0 1137
Msa0372810 AT1G69670.2 72.268 732 203 0 1 732 1 732 0.0 1137
Msa0372810 AT5G46210.1 40.460 739 418 13 1 732 69 792 3.58e-165 496
Msa0372810 AT4G02570.4 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa0372810 AT4G02570.2 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa0372810 AT4G02570.1 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa0372810 AT4G02570.3 34.177 711 424 13 52 732 42 738 3.63e-125 390
Msa0372810 AT1G02980.1 31.888 715 440 14 51 732 42 742 3.94e-108 346
Msa0372810 AT1G02980.2 31.888 715 440 14 51 732 42 742 3.94e-108 346
Msa0372810 AT1G43140.1 32.528 704 419 15 52 732 51 721 3.79e-101 327
Msa0372810 AT1G59790.2 26.829 328 216 9 52 366 48 364 2.91e-26 111
Msa0372810 AT1G59790.1 26.398 322 213 9 51 359 47 357 2.02e-24 106
Msa0372810 AT1G59800.1 25.490 204 146 3 52 251 43 244 1.14e-17 84.0
Msa0372810 AT4G12100.1 22.253 364 237 11 24 368 76 412 1.27e-16 83.6

Find 172 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTAGGTCCTTCTGTTTA+TGG 0.117167 3_1:+71561668 Msa0372810:CDS
ACAGGATCCTTCAACCTTTC+AGG 0.147657 3_1:-71562079 None:intergenic
AATATGGTTCTTCACAAATT+TGG 0.179774 3_1:+71561284 Msa0372810:CDS
CACTCAAGGAAGTTCCTTTC+TGG 0.187285 3_1:+71561379 Msa0372810:CDS
TTTATTGAGTGCTGTGGTTC+TGG 0.191669 3_1:+71561755 Msa0372810:CDS
TCGACTGTTGAATATGCTTT+TGG 0.245448 3_1:+71561571 Msa0372810:CDS
ATTGACGTGGCAAACTAATA+TGG 0.248034 3_1:+71562714 Msa0372810:CDS
ACGTCAATTTCCTGCCATTA+TGG 0.248558 3_1:-71562699 None:intergenic
ATTCAACAAGATTATAGATT+TGG 0.266006 3_1:+71562138 Msa0372810:CDS
TTAATCTATAAGGAGTCTTC+TGG 0.270183 3_1:+71561911 Msa0372810:CDS
TTAGCTTTGAAGAGCTTTAC+AGG 0.270979 3_1:+71558663 Msa0372810:CDS
TGATGATAAATATGAAGATT+TGG 0.279943 3_1:+71561952 Msa0372810:CDS
TCACTATTGCTGCTTCAATC+TGG 0.281451 3_1:-71563107 None:intergenic
GTTGTGCTCAAGTTGCTTCC+TGG 0.283417 3_1:-71563142 None:intergenic
AATTGGTAAGCTTGTTTGTT+TGG 0.290119 3_1:+71563312 Msa0372810:three_prime_UTR
CACTATTGCTGCTTCAATCT+GGG 0.291769 3_1:-71563106 None:intergenic
CAGCACTTTGCGAGAAATTT+CGG 0.292111 3_1:+71562659 Msa0372810:CDS
GCAGACTTAAAAGCTACTTT+TGG 0.295841 3_1:+71562742 Msa0372810:CDS
TTCTTTACATCCGTTGGATT+TGG 0.302500 3_1:-71563210 None:intergenic
GCAATCATTGGCTTTGGTTA+AGG 0.303138 3_1:+71562903 Msa0372810:CDS
TCAACAGTCGAGTCCTTATC+TGG 0.305371 3_1:-71561559 None:intergenic
CGTCAATTTCCTGCCATTAT+GGG 0.309194 3_1:-71562698 None:intergenic
GGAATCGGAACTGGAGAAAC+TGG 0.315369 3_1:+71563050 Msa0372810:CDS
ACAAAGATGCTAATGGATTT+AGG 0.324791 3_1:+71561653 Msa0372810:CDS
CCAATTTACCGCAAAATTAG+AGG 0.325857 3_1:+71562477 Msa0372810:CDS
ATGAGGAATTCAGATCTTTC+AGG 0.328092 3_1:-71562183 None:intergenic
CAAACAAGCTTACCAATTCT+AGG 0.340066 3_1:-71563307 None:intergenic
TAAGTAGAAATGAGTGTAGT+TGG 0.340089 3_1:-71563490 None:intergenic
GTAATCTTCGTTTCAGTTCC+AGG 0.340515 3_1:-71561845 None:intergenic
GGTTCTATTCCGGTATTTGC+AGG 0.345096 3_1:+71562333 Msa0372810:CDS
TGATAAAACTTGGATCATTC+TGG 0.345686 3_1:+71558598 Msa0372810:CDS
ATTTAGGTCCTTCTGTTTAT+GGG 0.347103 3_1:+71561669 Msa0372810:CDS
CAATCATTGGCTTTGGTTAA+GGG 0.347835 3_1:+71562904 Msa0372810:CDS
AAGCTTCAACTGAGTTCTAT+AGG 0.353571 3_1:+71561717 Msa0372810:CDS
CATGCTTAGATTAATCTATA+AGG 0.358765 3_1:+71561901 Msa0372810:CDS
ACAAGGTTATGGTTCTATTC+CGG 0.358842 3_1:+71562323 Msa0372810:CDS
CGCGAAAATTCCTCTTCCTT+GGG 0.361595 3_1:-71558532 None:intergenic
ACGCGAAAATTCCTCTTCCT+TGG 0.366742 3_1:-71558533 None:intergenic
GATTACCCTTGACAAGGTTA+TGG 0.368294 3_1:+71562312 Msa0372810:CDS
TGGAAGAATTAAACAGAAAG+TGG 0.370300 3_1:+71561399 Msa0372810:CDS
GATGATAAATATGAAGATTT+GGG 0.381206 3_1:+71561953 Msa0372810:CDS
ATCGATATCTTGCCTAGAAT+TGG 0.384579 3_1:+71563295 Msa0372810:exon
TCAGTTGAAGCTTGCAGAAA+AGG 0.388471 3_1:-71561707 None:intergenic
TTATTGAGTGCTGTGGTTCT+GGG 0.394402 3_1:+71561756 Msa0372810:CDS
GTGCCTGCAATCATTGGCTT+TGG 0.396338 3_1:+71562897 Msa0372810:CDS
ACTGTGCAGGTTCTGACAAC+AGG 0.396783 3_1:+71562586 Msa0372810:CDS
ATTGGTAAGCTTGTTTGTTT+GGG 0.398347 3_1:+71563313 Msa0372810:three_prime_UTR
AATGCCGACCACCCTGAGTT+AGG 0.401152 3_1:+71562547 Msa0372810:CDS
ATCCGTTTCTTTACATCCGT+TGG 0.402613 3_1:-71563216 None:intergenic
CGAGGTATGGTGATAAAACT+TGG 0.413055 3_1:+71558588 Msa0372810:CDS
ACTTGAGCACAACAATCTTA+TGG 0.413342 3_1:+71563152 Msa0372810:CDS
GAAGAGGTGCCTGCAATCAT+TGG 0.418942 3_1:+71562891 Msa0372810:CDS
AGGAACTGTTGTTGCACAAA+AGG 0.420428 3_1:+71563029 Msa0372810:CDS
TAACCAAAGCCAATGATTGC+AGG 0.428278 3_1:-71562900 None:intergenic
AAAACAACTGTTTATGAACT+TGG 0.428702 3_1:+71561500 Msa0372810:CDS
AAGTATAACAAAGATGCTAA+TGG 0.442676 3_1:+71561646 Msa0372810:CDS
AGCTTCAACTGAGTTCTATA+GGG 0.452068 3_1:+71561718 Msa0372810:CDS
TCTGTTTAATTCTTCCAGAA+AGG 0.455958 3_1:-71561393 None:intergenic
AGCCTCTGCACAAATTCAAC+AGG 0.456083 3_1:-71562097 None:intergenic
GTGAAATGTACTCTGGAATA+CGG 0.457810 3_1:-71562231 None:intergenic
TGCACAAAAGGAATCGGAAC+TGG 0.458457 3_1:+71563041 Msa0372810:CDS
CATGAGTACACACATTTGAT+AGG 0.461173 3_1:-71562797 None:intergenic
ATATAGGAATGCTTACAATA+TGG 0.464480 3_1:+71561268 Msa0372810:intron
TTCTTCATTCAAACCAGATA+AGG 0.468077 3_1:+71561546 Msa0372810:CDS
AAGCTTCGAAAAGGTCTAAA+GGG 0.471351 3_1:+71562268 Msa0372810:CDS
TACTGATCCTGAAAGGTTGA+AGG 0.474245 3_1:+71562072 Msa0372810:CDS
TAATCTATAAGGAGTCTTCT+GGG 0.474589 3_1:+71561912 Msa0372810:CDS
TGATAGAGTGAGCCACTACT+TGG 0.476648 3_1:+71561820 Msa0372810:CDS
CAACAGATCTAGCCATCTCT+TGG 0.478016 3_1:-71561352 None:intergenic
TGAAATGTACTCTGGAATAC+GGG 0.483088 3_1:-71562230 None:intergenic
AAAGTGGGATGACCACAATA+AGG 0.483530 3_1:+71561415 Msa0372810:CDS
CACCTCTTCAAATCTGATGC+TGG 0.488180 3_1:-71562877 None:intergenic
TTGACGTGGCAAACTAATAT+GGG 0.489497 3_1:+71562715 Msa0372810:CDS
GAGGAAGACATTAATGTGAT+AGG 0.490979 3_1:-71563468 None:intergenic
AATGTTGTGTCTTGTGAACT+AGG 0.494578 3_1:+71563353 Msa0372810:three_prime_UTR
TACCCACAGGCTCCTTCCTA+AGG 0.495503 3_1:-71562936 None:intergenic
GTAGGACCATCGCCTAACTC+AGG 0.500013 3_1:-71562559 None:intergenic
CAGAAAGGAACTTCCTTGAG+TGG 0.500983 3_1:-71561378 None:intergenic
TTAAGGGAAGAAATGTCCTT+AGG 0.501041 3_1:+71562920 Msa0372810:CDS
CTTATACTACAAGTTGATGT+GGG 0.502278 3_1:+71563509 Msa0372810:three_prime_UTR
ACACATTCTATGTTAATGAC+AGG 0.505783 3_1:+71562977 Msa0372810:CDS
TAAGCTTCGAAAAGGTCTAA+AGG 0.508584 3_1:+71562267 Msa0372810:CDS
CAGTTCCAGGGTCCAAGTAG+TGG 0.509512 3_1:-71561832 None:intergenic
TAGTGAGGATTATGAAATCC+AGG 0.510423 3_1:+71563124 Msa0372810:CDS
TATTACCTCAGCACCCATAA+TGG 0.510591 3_1:+71562685 Msa0372810:CDS
AGGTTCTGACAACAGGGTCT+TGG 0.511218 3_1:+71562593 Msa0372810:CDS
GGCTGAGATGCGTCTGAATG+AGG 0.515956 3_1:+71561793 Msa0372810:CDS
GTAAGCTTGTTTGTTTGGGT+AGG 0.516631 3_1:+71563317 Msa0372810:three_prime_UTR
GATTACTACTCTGGTGGAGA+AGG 0.517289 3_1:+71561862 Msa0372810:CDS
TAATCTTCGTTTCAGTTCCA+GGG 0.519743 3_1:-71561844 None:intergenic
TGTTGTTGCACAAAAGGAAT+CGG 0.522411 3_1:+71563035 Msa0372810:CDS
AGATGAGTAACCCAAGGAAG+AGG 0.525328 3_1:+71558522 Msa0372810:exon
CAGACAAAAGCCGCTTTGCA+AGG 0.528971 3_1:-71562390 None:intergenic
ATCCAACGGATGTAAAGAAA+CGG 0.530115 3_1:+71563214 Msa0372810:CDS
ACTATTGCTGCTTCAATCTG+GGG 0.530507 3_1:-71563105 None:intergenic
ACCGGCGAAGTTGTTAATAG+AGG 0.533572 3_1:+71561614 Msa0372810:CDS
AGGTCTAAAGGGAGTTAGTG+AGG 0.534609 3_1:+71562279 Msa0372810:CDS
GTAGAAATGAGTGTAGTTGG+AGG 0.536698 3_1:-71563487 None:intergenic
CAGATATTTATTGAGTGCTG+TGG 0.538710 3_1:+71561749 Msa0372810:CDS
TTACATCCGTTGGATTTGGA+AGG 0.539177 3_1:-71563206 None:intergenic
TTTAGGTCCTTCTGTTTATG+GGG 0.542075 3_1:+71561670 Msa0372810:CDS
ACAAAGAGTGAAATGTACTC+TGG 0.543670 3_1:-71562238 None:intergenic
ACCTCAGCACCCATAATGGC+AGG 0.544192 3_1:+71562689 Msa0372810:CDS
AACTTGTTCAGTCGTGTCAC+CGG 0.544635 3_1:+71561986 Msa0372810:CDS
GTGAGCCACTACTTGGACCC+TGG 0.545452 3_1:+71561827 Msa0372810:CDS
CGAGAGGCTATACTCTGGGC+TGG 0.546564 3_1:+71561307 Msa0372810:CDS
GTAGACGATAAGCTTCGAAA+AGG 0.549522 3_1:+71562259 Msa0372810:CDS
GATTGAGTCTCTCCTTGAGC+GGG 0.549775 3_1:+71563236 Msa0372810:CDS
ACATTCTGATGTACATGGAC+AGG 0.551895 3_1:+71561456 Msa0372810:CDS
TGAAACGAAGATTACTACTC+TGG 0.553950 3_1:+71561853 Msa0372810:CDS
ATTTATGATCATAATGCTAG+TGG 0.555562 3_1:+71558638 Msa0372810:CDS
TTCCAGCATCAGATTTGAAG+AGG 0.558511 3_1:+71562875 Msa0372810:CDS
ACTTATACTACAAGTTGATG+TGG 0.559434 3_1:+71563508 Msa0372810:three_prime_UTR
TCCTGCCATTATGGGTGCTG+AGG 0.559850 3_1:-71562690 None:intergenic
GTGCTGACATTTCTGTCGGA+AGG 0.563439 3_1:-71562642 None:intergenic
CAATTTACCGCAAAATTAGA+GGG 0.563610 3_1:+71562478 Msa0372810:CDS
TGGTCCTACACTAACTGTGC+AGG 0.566945 3_1:+71562573 Msa0372810:CDS
TCATTTGTAATGCCTTATTG+TGG 0.567815 3_1:-71561427 None:intergenic
CTCTTGGAGATGAGAAGTCA+TGG 0.572652 3_1:-71561336 None:intergenic
TGCTGATAGACTAAGCTACA+AGG 0.574564 3_1:+71562831 Msa0372810:CDS
TCCTCTATTAACAACTTCGC+CGG 0.574652 3_1:-71561615 None:intergenic
TGTCCTTAGGAAGGAGCCTG+TGG 0.575541 3_1:+71562933 Msa0372810:CDS
GACCACCCTGAGTTAGGCGA+TGG 0.575850 3_1:+71562553 Msa0372810:CDS
GACTTCTCATCTCCAAGAGA+TGG 0.576415 3_1:+71561340 Msa0372810:CDS
CAAAGTGCTGACATTTCTGT+CGG 0.576497 3_1:-71562646 None:intergenic
TATTGAGTGCTGTGGTTCTG+GGG 0.577754 3_1:+71561757 Msa0372810:CDS
GGGAAGAAATGTCCTTAGGA+AGG 0.582948 3_1:+71562924 Msa0372810:CDS
TTCTTCACAAATTTGGCGAG+AGG 0.583661 3_1:+71561291 Msa0372810:CDS
TTGGCGAGAGGCTATACTCT+GGG 0.583670 3_1:+71561303 Msa0372810:CDS
GGAAGAATTAAACAGAAAGT+GGG 0.584845 3_1:+71561400 Msa0372810:CDS
TTTGGCGAGAGGCTATACTC+TGG 0.586097 3_1:+71561302 Msa0372810:CDS
ATAAATATGAAGATTTGGGT+AGG 0.586773 3_1:+71561957 Msa0372810:CDS
TAGAGACATTCTGATGTACA+TGG 0.588793 3_1:+71561451 Msa0372810:CDS
AGATCTGTTGAAGCCACTCA+AGG 0.592937 3_1:+71561365 Msa0372810:CDS
AGAAGAAGATGAGTAACCCA+AGG 0.593480 3_1:+71558516 Msa0372810:exon
ATCGCCTAACTCAGGGTGGT+CGG 0.593707 3_1:-71562551 None:intergenic
ACTTCATACGTCAAAGACTA+CGG 0.595144 3_1:+71562037 Msa0372810:CDS
GCACAACAATCTTATGGCTG+AGG 0.595338 3_1:+71563158 Msa0372810:CDS
ATGAACTTGGTCAGAACCTG+TGG 0.595675 3_1:+71561513 Msa0372810:CDS
TTCTGGGGATTATCTCAAGA+AGG 0.597654 3_1:+71561772 Msa0372810:CDS
GTTGTAATGGATCCGAGGTA+TGG 0.601802 3_1:+71558575 Msa0372810:CDS
AGCTTGTTACTGATCCTGAA+AGG 0.602699 3_1:+71562065 Msa0372810:CDS
ATAGAACCATAACCTTGTCA+AGG 0.604566 3_1:-71562318 None:intergenic
AATTCTTCCCCATAAACAGA+AGG 0.608454 3_1:-71561677 None:intergenic
AACGAAGATTACTACTCTGG+TGG 0.609690 3_1:+71561856 Msa0372810:CDS
TGCAGAGATTACCCTTGACA+AGG 0.610325 3_1:+71562306 Msa0372810:CDS
TCGCAAACATCTTTACCCAC+AGG 0.610963 3_1:-71562949 None:intergenic
TTAGTACACAGTGAGCGTAC+CGG 0.613443 3_1:+71561596 Msa0372810:CDS
TACTCTGGTGGAGAAGGAGA+TGG 0.615285 3_1:+71561868 Msa0372810:CDS
TAGAACCATAACCTTGTCAA+GGG 0.616816 3_1:-71562317 None:intergenic
CATGTCACACTAGATTGAGC+TGG 0.619728 3_1:-71562616 None:intergenic
GTTAAGCTGAAGACAGAATG+TGG 0.624729 3_1:+71562451 Msa0372810:CDS
GAGTACACACATTTGATAGG+TGG 0.629808 3_1:-71562794 None:intergenic
ACAAGCAGCACCTTGCAAAG+CGG 0.644467 3_1:+71562380 Msa0372810:CDS
TTGTTCAGTCGTGTCACCGG+TGG 0.648925 3_1:+71561989 Msa0372810:CDS
TAGGACCATCGCCTAACTCA+GGG 0.650482 3_1:-71562558 None:intergenic
GGATTGAGTCTCTCCTTGAG+CGG 0.650864 3_1:+71563235 Msa0372810:CDS
ATCCTGTTGAATTTGTGCAG+AGG 0.652724 3_1:+71562095 Msa0372810:CDS
GCGATTCCTTCCAAATCCAA+CGG 0.655030 3_1:+71563200 Msa0372810:CDS
CTGTGCAGGTTCTGACAACA+GGG 0.655678 3_1:+71562587 Msa0372810:CDS
GTCCTTAGGAAGGAGCCTGT+GGG 0.656948 3_1:+71562934 Msa0372810:CDS
AGAACCTGCACAGTTAGTGT+AGG 0.658313 3_1:-71562577 None:intergenic
CAGTTTCTGATGATGCTGAG+AGG 0.661049 3_1:+71562419 Msa0372810:CDS
AGATTGAAGCAGCAATAGTG+AGG 0.663820 3_1:+71563109 Msa0372810:CDS
ATGTGGTTGTAATGGATCCG+AGG 0.669826 3_1:+71558570 Msa0372810:CDS
TTATACTACAAGTTGATGTG+GGG 0.681618 3_1:+71563510 Msa0372810:three_prime_UTR
GAAATGTACTCTGGAATACG+GGG 0.691252 3_1:-71562229 None:intergenic
TTTGAGTTGAGAGAAAATGG+TGG 0.695166 3_1:-71558315 None:intergenic
GACCATCGCCTAACTCAGGG+TGG 0.727453 3_1:-71562555 None:intergenic
TGTGGGTAAAGATGTTTGCG+AGG 0.737739 3_1:+71562951 Msa0372810:CDS
ATAATGGCAGGAAATTGACG+TGG 0.739143 3_1:+71562701 Msa0372810:CDS
TTGGAGATGAGAAGTCATGG+TGG 0.753515 3_1:-71561333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTATGTTTAAAACT+CGG - chr3_1:71558902-71558921 None:intergenic 10.0%
!!! ATTGTTTTATAAGATATATA+GGG + chr3_1:71559105-71559124 Msa0372810:intron 10.0%
!! AAAAGATGTAAATTATATTA+TGG + chr3_1:71560556-71560575 Msa0372810:intron 10.0%
!! ATTCAAATAAAATTCTAATT+TGG - chr3_1:71560621-71560640 None:intergenic 10.0%
!!! ACTATTTTATTTTCATTATT+AGG - chr3_1:71560939-71560958 None:intergenic 10.0%
!! TTCTATAAACTATTAAATAA+AGG - chr3_1:71561103-71561122 None:intergenic 10.0%
!!! TTTTTTAATGGAATTAATCT+AGG + chr3_1:71558425-71558444 Msa0372810:intron 15.0%
!!! TGATTTCTATTATTTGTTAT+TGG + chr3_1:71558698-71558717 Msa0372810:intron 15.0%
!!! CTTGTTTTTAATGATATATA+GGG + chr3_1:71558799-71558818 Msa0372810:intron 15.0%
!!! TTGTTTTTAATGATATATAG+GGG + chr3_1:71558800-71558819 Msa0372810:intron 15.0%
!!! GATTGTTTTATAAGATATAT+AGG + chr3_1:71559104-71559123 Msa0372810:intron 15.0%
!!! AGTTAAATTGTTTTCATATA+TGG - chr3_1:71559252-71559271 None:intergenic 15.0%
!!! TGAAAATATTTTGAAAACTA+TGG - chr3_1:71559512-71559531 None:intergenic 15.0%
!!! GTTTTCAAAATATTTTCATA+AGG + chr3_1:71559514-71559533 Msa0372810:intron 15.0%
!! TTTAGTCAAATAGAAAATTA+GGG - chr3_1:71559591-71559610 None:intergenic 15.0%
!! AAAATAATTAAGATGTCATA+TGG - chr3_1:71560211-71560230 None:intergenic 15.0%
!! TACTTTATTGTCTTTATTAT+GGG + chr3_1:71561207-71561226 Msa0372810:intron 15.0%
!! AAACTGTATAAGATAAAAAT+AGG + chr3_1:71563009-71563028 Msa0372810:CDS 15.0%
!! GAAAGATTAATAACAAGAAA+AGG - chr3_1:71558385-71558404 None:intergenic 20.0%
!!! TCAATTTGATGGTTTTTTAA+TGG + chr3_1:71558413-71558432 Msa0372810:intron 20.0%
!! AATTAATCTAGGTTATGTAA+TGG + chr3_1:71558436-71558455 Msa0372810:intron 20.0%
!!! TTTTTTTTTTGTTGCATTGT+AGG + chr3_1:71558471-71558490 Msa0372810:intron 20.0%
!!! GCTTGTTTTTAATGATATAT+AGG + chr3_1:71558798-71558817 Msa0372810:intron 20.0%
!!! AAGTTGTTTTTATTTGTTGT+TGG + chr3_1:71558996-71559015 Msa0372810:intron 20.0%
!!! TTGTCATTGGATTTTTTTTA+GGG + chr3_1:71559338-71559357 Msa0372810:intron 20.0%
!!! TTTTTTAGGGGTTTTTATAA+TGG + chr3_1:71559351-71559370 Msa0372810:intron 20.0%
!!! AAAGCAAAAATTTTCAATCT+AGG + chr3_1:71559391-71559410 Msa0372810:intron 20.0%
!!! AAGCAAAAATTTTCAATCTA+GGG + chr3_1:71559392-71559411 Msa0372810:intron 20.0%
!! CTTTAGTCAAATAGAAAATT+AGG - chr3_1:71559592-71559611 None:intergenic 20.0%
!! TAGATTTCAAAAAGGAAAAT+AGG + chr3_1:71560157-71560176 Msa0372810:intron 20.0%
!! AGATTTCAAAAAGGAAAATA+GGG + chr3_1:71560158-71560177 Msa0372810:intron 20.0%
!!! TTTTAAAAACTCCATATTTC+AGG + chr3_1:71560227-71560246 Msa0372810:intron 20.0%
!! TGTAATTAATACCTGAAATA+TGG - chr3_1:71560241-71560260 None:intergenic 20.0%
!! ACATAAAAAAGTTAATTGCT+AGG - chr3_1:71560293-71560312 None:intergenic 20.0%
!!! AGGAAGTATTAAATGTTTTT+AGG - chr3_1:71560398-71560417 None:intergenic 20.0%
!!! CTTTTAAACCAATAATTAGA+TGG + chr3_1:71561013-71561032 Msa0372810:intron 20.0%
!! TAAACTATTAAATAAAGGAG+AGG - chr3_1:71561098-71561117 None:intergenic 20.0%
!! GTACTTTATTGTCTTTATTA+TGG + chr3_1:71561206-71561225 Msa0372810:intron 20.0%
!!! TATTTTTCATCTTTATCTTG+TGG + chr3_1:71561245-71561264 Msa0372810:intron 20.0%
!! TGATGATAAATATGAAGATT+TGG + chr3_1:71561952-71561971 Msa0372810:CDS 20.0%
!! GATGATAAATATGAAGATTT+GGG + chr3_1:71561953-71561972 Msa0372810:CDS 20.0%
!! ATTCAACAAGATTATAGATT+TGG + chr3_1:71562138-71562157 Msa0372810:CDS 20.0%
! TTACTGAAAAAGTGATTATG+AGG - chr3_1:71558354-71558373 None:intergenic 25.0%
!! TTCTTTTCTCTTCAATTTGA+TGG + chr3_1:71558402-71558421 Msa0372810:intron 25.0%
! ATTTATGATCATAATGCTAG+TGG + chr3_1:71558638-71558657 Msa0372810:CDS 25.0%
!! TAATATTTTGTGACACTGTT+TGG + chr3_1:71558913-71558932 Msa0372810:intron 25.0%
! AACTTATGAACAATCGTATA+AGG - chr3_1:71558956-71558975 None:intergenic 25.0%
!!! TTTTATTTGTTGTTGGTTCT+AGG + chr3_1:71559003-71559022 Msa0372810:intron 25.0%
!!! GTTGTCATTGGATTTTTTTT+AGG + chr3_1:71559337-71559356 Msa0372810:intron 25.0%
!!! TGTCATTGGATTTTTTTTAG+GGG + chr3_1:71559339-71559358 Msa0372810:intron 25.0%
!! GGTTTTTATAATGGTCAAAT+TGG + chr3_1:71559360-71559379 Msa0372810:intron 25.0%
!! TTGAAAATTTTTGCTTTCCT+AGG - chr3_1:71559388-71559407 None:intergenic 25.0%
!! TTTATTACTTTGGAGATGTT+TGG + chr3_1:71559415-71559434 Msa0372810:intron 25.0%
! TATGACAATAAGTGATTTGA+AGG - chr3_1:71559541-71559560 None:intergenic 25.0%
! ATCTATGGTATATATCCAAA+CGG + chr3_1:71559673-71559692 Msa0372810:intron 25.0%
! TTATGATAAGATGTCATGTT+TGG + chr3_1:71560004-71560023 Msa0372810:intron 25.0%
! ATATGTATAGTTAACACAGA+TGG - chr3_1:71560053-71560072 None:intergenic 25.0%
!! GCAATTGAAATGTTTTCTTT+GGG - chr3_1:71560694-71560713 None:intergenic 25.0%
!! TGCAATTGAAATGTTTTCTT+TGG - chr3_1:71560695-71560714 None:intergenic 25.0%
! TATAATGTCTATGTGCAAAT+AGG + chr3_1:71560719-71560738 Msa0372810:intron 25.0%
! ATAATGTCTATGTGCAAATA+GGG + chr3_1:71560720-71560739 Msa0372810:intron 25.0%
! ATATAGGAATGCTTACAATA+TGG + chr3_1:71561268-71561287 Msa0372810:intron 25.0%
! AATATGGTTCTTCACAAATT+TGG + chr3_1:71561284-71561303 Msa0372810:CDS 25.0%
!!! ATAAACAGTTGTTTTCTTGA+TGG - chr3_1:71561495-71561514 None:intergenic 25.0%
! AAAACAACTGTTTATGAACT+TGG + chr3_1:71561500-71561519 Msa0372810:CDS 25.0%
! AAGTATAACAAAGATGCTAA+TGG + chr3_1:71561646-71561665 Msa0372810:CDS 25.0%
! CATGCTTAGATTAATCTATA+AGG + chr3_1:71561901-71561920 Msa0372810:CDS 25.0%
! ATAAATATGAAGATTTGGGT+AGG + chr3_1:71561957-71561976 Msa0372810:CDS 25.0%
! GTTAATGAAAAATTCGAATG+AGG - chr3_1:71562203-71562222 None:intergenic 25.0%
! TTTTAAGCATGTGGTTGTAA+TGG + chr3_1:71558562-71558581 Msa0372810:CDS 30.0%
TGATAAAACTTGGATCATTC+TGG + chr3_1:71558598-71558617 Msa0372810:CDS 30.0%
! AATGATATATAGGGGTTGAT+TGG + chr3_1:71558808-71558827 Msa0372810:intron 30.0%
! GTGTATTTGAGCTTGTTTAT+TGG + chr3_1:71558835-71558854 Msa0372810:intron 30.0%
!! AAGTTTTGTGATACTGATGT+CGG + chr3_1:71558861-71558880 Msa0372810:intron 30.0%
TAAGATATATAGGGTCTGAT+TGG + chr3_1:71559114-71559133 Msa0372810:intron 30.0%
GCATATTTGAGCTTATTTAC+TGG + chr3_1:71559141-71559160 Msa0372810:intron 30.0%
!! ATAAGTTTTGTGACACAGTT+TGG + chr3_1:71559165-71559184 Msa0372810:intron 30.0%
ATTTAACTGATAAGCACTTG+TGG + chr3_1:71559264-71559283 Msa0372810:intron 30.0%
ATGACAACTAACTACAACTA+TGG - chr3_1:71559325-71559344 None:intergenic 30.0%
TAGTTGTAGTTAGTTGTCAT+TGG + chr3_1:71559325-71559344 Msa0372810:intron 30.0%
! CAATCTAGGGTTTATTACTT+TGG + chr3_1:71559405-71559424 Msa0372810:intron 30.0%
GAGCTTATTTGCTTATGTTA+TGG + chr3_1:71559440-71559459 Msa0372810:intron 30.0%
GCTGTTAAGTTATGAATCTA+TGG + chr3_1:71559658-71559677 Msa0372810:intron 30.0%
TCTATGGTATATATCCAAAC+GGG + chr3_1:71559674-71559693 Msa0372810:intron 30.0%
TCACATAAGTTAATGACAGA+AGG - chr3_1:71559812-71559831 None:intergenic 30.0%
TGCTTTCATATGCACAAATT+TGG - chr3_1:71559847-71559866 None:intergenic 30.0%
AAGCAAATTCTATCGTTCTT+TGG + chr3_1:71559862-71559881 Msa0372810:intron 30.0%
AGCAAATTCTATCGTTCTTT+GGG + chr3_1:71559863-71559882 Msa0372810:intron 30.0%
TTCTTCACTCTTATGAACTA+TGG + chr3_1:71559958-71559977 Msa0372810:intron 30.0%
AAAGGCTGTAGATTTCAAAA+AGG + chr3_1:71560149-71560168 Msa0372810:intron 30.0%
TTAAATATTGAATGCCAGCT+TGG - chr3_1:71560340-71560359 None:intergenic 30.0%
TATTATGCTGATCAAGTAGA+AGG + chr3_1:71560439-71560458 Msa0372810:intron 30.0%
ATTAGAGAAAAGTCGATGTA+AGG + chr3_1:71560593-71560612 Msa0372810:intron 30.0%
! ATGTTATTGATAACACTGGT+AGG + chr3_1:71560912-71560931 Msa0372810:intron 30.0%
! TGTTATTGATAACACTGGTA+GGG + chr3_1:71560913-71560932 Msa0372810:intron 30.0%
TGCATCTACCATCTAATTAT+TGG - chr3_1:71561024-71561043 None:intergenic 30.0%
CATCTTTATCTTGTGGATAT+AGG + chr3_1:71561252-71561271 Msa0372810:intron 30.0%
TCTGTTTAATTCTTCCAGAA+AGG - chr3_1:71561396-71561415 None:intergenic 30.0%
TGGAAGAATTAAACAGAAAG+TGG + chr3_1:71561399-71561418 Msa0372810:CDS 30.0%
GGAAGAATTAAACAGAAAGT+GGG + chr3_1:71561400-71561419 Msa0372810:CDS 30.0%
! TCATTTGTAATGCCTTATTG+TGG - chr3_1:71561430-71561449 None:intergenic 30.0%
TTCTTCATTCAAACCAGATA+AGG + chr3_1:71561546-71561565 Msa0372810:CDS 30.0%
!! ACAAAGATGCTAATGGATTT+AGG + chr3_1:71561653-71561672 Msa0372810:CDS 30.0%
ATTTAGGTCCTTCTGTTTAT+GGG + chr3_1:71561669-71561688 Msa0372810:CDS 30.0%
TTAATCTATAAGGAGTCTTC+TGG + chr3_1:71561911-71561930 Msa0372810:CDS 30.0%
TAATCTATAAGGAGTCTTCT+GGG + chr3_1:71561912-71561931 Msa0372810:CDS 30.0%
CAATTTACCGCAAAATTAGA+GGG + chr3_1:71562478-71562497 Msa0372810:CDS 30.0%
!!! CAGACTTAAAAGCTACTTTT+GGG + chr3_1:71562743-71562762 Msa0372810:CDS 30.0%
ACACATTCTATGTTAATGAC+AGG + chr3_1:71562977-71562996 Msa0372810:CDS 30.0%
! AATTGGTAAGCTTGTTTGTT+TGG + chr3_1:71563312-71563331 Msa0372810:three_prime_UTR 30.0%
! ATTGGTAAGCTTGTTTGTTT+GGG + chr3_1:71563313-71563332 Msa0372810:three_prime_UTR 30.0%
GTCAAAAATAGCTGATACAT+TGG + chr3_1:71563375-71563394 Msa0372810:three_prime_UTR 30.0%
TAAGTAGAAATGAGTGTAGT+TGG - chr3_1:71563493-71563512 None:intergenic 30.0%
!! ACTTATACTACAAGTTGATG+TGG + chr3_1:71563508-71563527 Msa0372810:three_prime_UTR 30.0%
!! CTTATACTACAAGTTGATGT+GGG + chr3_1:71563509-71563528 Msa0372810:three_prime_UTR 30.0%
!! TTATACTACAAGTTGATGTG+GGG + chr3_1:71563510-71563529 Msa0372810:three_prime_UTR 30.0%
! ATGGTGGCAATTTTTCTGTT+TGG - chr3_1:71558302-71558321 None:intergenic 35.0%
!! TTTGAGTTGAGAGAAAATGG+TGG - chr3_1:71558318-71558337 None:intergenic 35.0%
!!! GCTTTTGAGTTGAGAGAAAA+TGG - chr3_1:71558321-71558340 None:intergenic 35.0%
!! CAAGTTTTATCACCATACCT+CGG - chr3_1:71558590-71558609 None:intergenic 35.0%
!! TTAGCTTTGAAGAGCTTTAC+AGG + chr3_1:71558663-71558682 Msa0372810:CDS 35.0%
! TATATAGGGGTTGATTGGAT+TGG + chr3_1:71558813-71558832 Msa0372810:intron 35.0%
TATATAGGGTCTGATTGGAT+TGG + chr3_1:71559119-71559138 Msa0372810:intron 35.0%
TAAGTTAATGACAGAAGGCA+AGG - chr3_1:71559807-71559826 None:intergenic 35.0%
GACACGCATGTCATAATATA+AGG - chr3_1:71559923-71559942 None:intergenic 35.0%
! TTGTTAAGTCCCTGTTTTCT+TGG + chr3_1:71560089-71560108 Msa0372810:intron 35.0%
AAACTCCAACCAAGAAAACA+GGG - chr3_1:71560101-71560120 None:intergenic 35.0%
AAAACTCCAACCAAGAAAAC+AGG - chr3_1:71560102-71560121 None:intergenic 35.0%
AAGTGACATGATTATGAGTC+AGG + chr3_1:71560260-71560279 Msa0372810:intron 35.0%
AAAAAGTTAATTGCTAGGCC+TGG - chr3_1:71560288-71560307 None:intergenic 35.0%
TTAGGAATGTTGTGTGAATG+AGG - chr3_1:71560380-71560399 None:intergenic 35.0%
!! CAGCACTTTTTAACAACACT+GGG - chr3_1:71560752-71560771 None:intergenic 35.0%
!! TCAGCACTTTTTAACAACAC+TGG - chr3_1:71560753-71560772 None:intergenic 35.0%
! CTGCATGTTATTGATAACAC+TGG + chr3_1:71560908-71560927 Msa0372810:intron 35.0%
GAGAGGACAATAATGAAAGT+AGG - chr3_1:71561081-71561100 None:intergenic 35.0%
TTTGATGTGCACGTATCAAT+AGG - chr3_1:71561178-71561197 None:intergenic 35.0%
ATTGATACGTGCACATCAAA+TGG + chr3_1:71561178-71561197 Msa0372810:intron 35.0%
TAGAGACATTCTGATGTACA+TGG + chr3_1:71561451-71561470 Msa0372810:CDS 35.0%
!! CAGTTGTTTTCTTGATGGTT+TGG - chr3_1:71561490-71561509 None:intergenic 35.0%
! TCGACTGTTGAATATGCTTT+TGG + chr3_1:71561571-71561590 Msa0372810:CDS 35.0%
GATTTAGGTCCTTCTGTTTA+TGG + chr3_1:71561668-71561687 Msa0372810:CDS 35.0%
TTTAGGTCCTTCTGTTTATG+GGG + chr3_1:71561670-71561689 Msa0372810:CDS 35.0%
AATTCTTCCCCATAAACAGA+AGG - chr3_1:71561680-71561699 None:intergenic 35.0%
AAGCTTCAACTGAGTTCTAT+AGG + chr3_1:71561717-71561736 Msa0372810:CDS 35.0%
AGCTTCAACTGAGTTCTATA+GGG + chr3_1:71561718-71561737 Msa0372810:CDS 35.0%
! CAGATATTTATTGAGTGCTG+TGG + chr3_1:71561749-71561768 Msa0372810:CDS 35.0%
TAATCTTCGTTTCAGTTCCA+GGG - chr3_1:71561847-71561866 None:intergenic 35.0%
TGAAACGAAGATTACTACTC+TGG + chr3_1:71561853-71561872 Msa0372810:CDS 35.0%
ACTTCATACGTCAAAGACTA+CGG + chr3_1:71562037-71562056 Msa0372810:CDS 35.0%
ATGAGGAATTCAGATCTTTC+AGG - chr3_1:71562186-71562205 None:intergenic 35.0%
!! TGAAATGTACTCTGGAATAC+GGG - chr3_1:71562233-71562252 None:intergenic 35.0%
!! GTGAAATGTACTCTGGAATA+CGG - chr3_1:71562234-71562253 None:intergenic 35.0%
ACAAAGAGTGAAATGTACTC+TGG - chr3_1:71562241-71562260 None:intergenic 35.0%
TAAGCTTCGAAAAGGTCTAA+AGG + chr3_1:71562267-71562286 Msa0372810:CDS 35.0%
AAGCTTCGAAAAGGTCTAAA+GGG + chr3_1:71562268-71562287 Msa0372810:CDS 35.0%
TAGAACCATAACCTTGTCAA+GGG - chr3_1:71562320-71562339 None:intergenic 35.0%
ATAGAACCATAACCTTGTCA+AGG - chr3_1:71562321-71562340 None:intergenic 35.0%
! ACAAGGTTATGGTTCTATTC+CGG + chr3_1:71562323-71562342 Msa0372810:CDS 35.0%
! CATCTTTTTCCTGCAAATAC+CGG - chr3_1:71562345-71562364 None:intergenic 35.0%
! CCTCTAATTTTGCGGTAAAT+TGG - chr3_1:71562480-71562499 None:intergenic 35.0%
CCAATTTACCGCAAAATTAG+AGG + chr3_1:71562477-71562496 Msa0372810:CDS 35.0%
! AAACATGCCCTCTAATTTTG+CGG - chr3_1:71562488-71562507 None:intergenic 35.0%
ATTGACGTGGCAAACTAATA+TGG + chr3_1:71562714-71562733 Msa0372810:CDS 35.0%
TTGACGTGGCAAACTAATAT+GGG + chr3_1:71562715-71562734 Msa0372810:CDS 35.0%
!! GCAGACTTAAAAGCTACTTT+TGG + chr3_1:71562742-71562761 Msa0372810:CDS 35.0%
!!! TTAAAAGCTACTTTTGGGAG+TGG + chr3_1:71562748-71562767 Msa0372810:CDS 35.0%
CATGAGTACACACATTTGAT+AGG - chr3_1:71562800-71562819 None:intergenic 35.0%
!! CAATCATTGGCTTTGGTTAA+GGG + chr3_1:71562904-71562923 Msa0372810:CDS 35.0%
TTAAGGGAAGAAATGTCCTT+AGG + chr3_1:71562920-71562939 Msa0372810:CDS 35.0%
TGTTGTTGCACAAAAGGAAT+CGG + chr3_1:71563035-71563054 Msa0372810:CDS 35.0%
ACTGGATACTCAACAAAAAG+TGG + chr3_1:71563068-71563087 Msa0372810:CDS 35.0%
TAGTGAGGATTATGAAATCC+AGG + chr3_1:71563124-71563143 Msa0372810:CDS 35.0%
ACTTGAGCACAACAATCTTA+TGG + chr3_1:71563152-71563171 Msa0372810:CDS 35.0%
TTCTTTACATCCGTTGGATT+TGG - chr3_1:71563213-71563232 None:intergenic 35.0%
ATCCAACGGATGTAAAGAAA+CGG + chr3_1:71563214-71563233 Msa0372810:CDS 35.0%
ATCGATATCTTGCCTAGAAT+TGG + chr3_1:71563295-71563314 Msa0372810:exon 35.0%
CAAACAAGCTTACCAATTCT+AGG - chr3_1:71563310-71563329 None:intergenic 35.0%
AATGTTGTGTCTTGTGAACT+AGG + chr3_1:71563353-71563372 Msa0372810:three_prime_UTR 35.0%
GAGGAAGACATTAATGTGAT+AGG - chr3_1:71563471-71563490 None:intergenic 35.0%
AGAAGAAGATGAGTAACCCA+AGG + chr3_1:71558516-71558535 Msa0372810:exon 40.0%
! AAGAGGAATTTTCGCGTTGA+GGG + chr3_1:71558539-71558558 Msa0372810:CDS 40.0%
CGAGGTATGGTGATAAAACT+TGG + chr3_1:71558588-71558607 Msa0372810:CDS 40.0%
ACTACAACTATGGCGATGTT+TGG - chr3_1:71559315-71559334 None:intergenic 40.0%
! TAATGGTCAAATTGGTGCCT+AGG + chr3_1:71559368-71559387 Msa0372810:intron 40.0%
! GTTCTTTGGGTTTACACGTA+GGG + chr3_1:71559876-71559895 Msa0372810:intron 40.0%
! TTCTTTGGGTTTACACGTAG+GGG + chr3_1:71559877-71559896 Msa0372810:intron 40.0%
! ACTATGGTTAGCTGTGTTAG+TGG + chr3_1:71559974-71559993 Msa0372810:intron 40.0%
TAGTTAACACAGATGGTGAC+TGG - chr3_1:71560046-71560065 None:intergenic 40.0%
! TAAGTCCCTGTTTTCTTGGT+TGG + chr3_1:71560093-71560112 Msa0372810:intron 40.0%
ATGATTATGAGTCAGGTTCC+AGG + chr3_1:71560267-71560286 Msa0372810:intron 40.0%
CGTATATTTGATTGCCAAGC+TGG + chr3_1:71560323-71560342 Msa0372810:intron 40.0%
TACTTCCTACCTTAAGCAAC+TGG + chr3_1:71560410-71560429 Msa0372810:intron 40.0%
ACTTCCTACCTTAAGCAACT+GGG + chr3_1:71560411-71560430 Msa0372810:intron 40.0%
ATAACTCTCCCAGTTGCTTA+AGG - chr3_1:71560422-71560441 None:intergenic 40.0%
GCTGATCAAGTAGAAGGATA+TGG + chr3_1:71560445-71560464 Msa0372810:intron 40.0%
GTCTATGTGCAAATAGGGTT+AGG + chr3_1:71560725-71560744 Msa0372810:intron 40.0%
GCGAAACTAAGATAGCATCA+CGG - chr3_1:71560822-71560841 None:intergenic 40.0%
TTCTTCACAAATTTGGCGAG+AGG + chr3_1:71561291-71561310 Msa0372810:CDS 40.0%
AAAGTGGGATGACCACAATA+AGG + chr3_1:71561415-71561434 Msa0372810:CDS 40.0%
ACATTCTGATGTACATGGAC+AGG + chr3_1:71561456-71561475 Msa0372810:CDS 40.0%
! GAAGAACATTTTCTCTCCAC+AGG - chr3_1:71561532-71561551 None:intergenic 40.0%
TCCTCTATTAACAACTTCGC+CGG - chr3_1:71561618-71561637 None:intergenic 40.0%
TCAGTTGAAGCTTGCAGAAA+AGG - chr3_1:71561710-71561729 None:intergenic 40.0%
! TTTATTGAGTGCTGTGGTTC+TGG + chr3_1:71561755-71561774 Msa0372810:CDS 40.0%
! TTATTGAGTGCTGTGGTTCT+GGG + chr3_1:71561756-71561775 Msa0372810:CDS 40.0%
! TTCTGGGGATTATCTCAAGA+AGG + chr3_1:71561772-71561791 Msa0372810:CDS 40.0%
GTAATCTTCGTTTCAGTTCC+AGG - chr3_1:71561848-71561867 None:intergenic 40.0%
AACGAAGATTACTACTCTGG+TGG + chr3_1:71561856-71561875 Msa0372810:CDS 40.0%
!! AGCTTGTTACTGATCCTGAA+AGG + chr3_1:71562065-71562084 Msa0372810:CDS 40.0%
TACTGATCCTGAAAGGTTGA+AGG + chr3_1:71562072-71562091 Msa0372810:CDS 40.0%
ATCCTGTTGAATTTGTGCAG+AGG + chr3_1:71562095-71562114 Msa0372810:CDS 40.0%
!! GAAATGTACTCTGGAATACG+GGG - chr3_1:71562232-71562251 None:intergenic 40.0%
GTAGACGATAAGCTTCGAAA+AGG + chr3_1:71562259-71562278 Msa0372810:CDS 40.0%
GATTACCCTTGACAAGGTTA+TGG + chr3_1:71562312-71562331 Msa0372810:CDS 40.0%
GTTAAGCTGAAGACAGAATG+TGG + chr3_1:71562451-71562470 Msa0372810:CDS 40.0%
!! CAAAGTGCTGACATTTCTGT+CGG - chr3_1:71562649-71562668 None:intergenic 40.0%
CAGCACTTTGCGAGAAATTT+CGG + chr3_1:71562659-71562678 Msa0372810:CDS 40.0%
TATTACCTCAGCACCCATAA+TGG + chr3_1:71562685-71562704 Msa0372810:CDS 40.0%
CGTCAATTTCCTGCCATTAT+GGG - chr3_1:71562701-71562720 None:intergenic 40.0%
ACGTCAATTTCCTGCCATTA+TGG - chr3_1:71562702-71562721 None:intergenic 40.0%
ATAATGGCAGGAAATTGACG+TGG + chr3_1:71562701-71562720 Msa0372810:CDS 40.0%
GAGTACACACATTTGATAGG+TGG - chr3_1:71562797-71562816 None:intergenic 40.0%
TGCTGATAGACTAAGCTACA+AGG + chr3_1:71562831-71562850 Msa0372810:CDS 40.0%
TTCCAGCATCAGATTTGAAG+AGG + chr3_1:71562875-71562894 Msa0372810:CDS 40.0%
TAACCAAAGCCAATGATTGC+AGG - chr3_1:71562903-71562922 None:intergenic 40.0%
!! GCAATCATTGGCTTTGGTTA+AGG + chr3_1:71562903-71562922 Msa0372810:CDS 40.0%
AGGAACTGTTGTTGCACAAA+AGG + chr3_1:71563029-71563048 Msa0372810:CDS 40.0%
GGATACTCAACAAAAAGTGG+AGG + chr3_1:71563071-71563090 Msa0372810:CDS 40.0%
TACTCAACAAAAAGTGGAGG+AGG + chr3_1:71563074-71563093 Msa0372810:CDS 40.0%
AACAAAAAGTGGAGGAGGAT+CGG + chr3_1:71563079-71563098 Msa0372810:CDS 40.0%
! ACTATTGCTGCTTCAATCTG+GGG - chr3_1:71563108-71563127 None:intergenic 40.0%
! CACTATTGCTGCTTCAATCT+GGG - chr3_1:71563109-71563128 None:intergenic 40.0%
! TCACTATTGCTGCTTCAATC+TGG - chr3_1:71563110-71563129 None:intergenic 40.0%
AGATTGAAGCAGCAATAGTG+AGG + chr3_1:71563109-71563128 Msa0372810:CDS 40.0%
TTACATCCGTTGGATTTGGA+AGG - chr3_1:71563209-71563228 None:intergenic 40.0%
ATCCGTTTCTTTACATCCGT+TGG - chr3_1:71563219-71563238 None:intergenic 40.0%
TTTCCAAAAATTCCCGCTCA+AGG - chr3_1:71563251-71563270 None:intergenic 40.0%
! GTAAGCTTGTTTGTTTGGGT+AGG + chr3_1:71563317-71563336 Msa0372810:three_prime_UTR 40.0%
GTAGAAATGAGTGTAGTTGG+AGG - chr3_1:71563490-71563509 None:intergenic 40.0%
AGATGAGTAACCCAAGGAAG+AGG + chr3_1:71558522-71558541 Msa0372810:exon 45.0%
CGCGAAAATTCCTCTTCCTT+GGG - chr3_1:71558535-71558554 None:intergenic 45.0%
ACGCGAAAATTCCTCTTCCT+TGG - chr3_1:71558536-71558555 None:intergenic 45.0%
! GAAGAGGAATTTTCGCGTTG+AGG + chr3_1:71558538-71558557 Msa0372810:CDS 45.0%
!!! CGTTGAGGGTTTTAAGCATG+TGG + chr3_1:71558553-71558572 Msa0372810:CDS 45.0%
!! ATGTGGTTGTAATGGATCCG+AGG + chr3_1:71558570-71558589 Msa0372810:CDS 45.0%
!! GTTGTAATGGATCCGAGGTA+TGG + chr3_1:71558575-71558594 Msa0372810:CDS 45.0%
TGATACTGATGTCGGTCCTT+GGG + chr3_1:71558869-71558888 Msa0372810:intron 45.0%
AAAACTCGGTATCAGACCCA+AGG - chr3_1:71558888-71558907 None:intergenic 45.0%
TCATAGTAGCTGATCCCGTT+TGG - chr3_1:71559691-71559710 None:intergenic 45.0%
! CGTTCTTTGGGTTTACACGT+AGG + chr3_1:71559875-71559894 Msa0372810:intron 45.0%
!! CAATGATGGCTTGCTACAGA+AGG - chr3_1:71560126-71560145 None:intergenic 45.0%
TTGGAGATGAGAAGTCATGG+TGG - chr3_1:71561336-71561355 None:intergenic 45.0%
CTCTTGGAGATGAGAAGTCA+TGG - chr3_1:71561339-71561358 None:intergenic 45.0%
GACTTCTCATCTCCAAGAGA+TGG + chr3_1:71561340-71561359 Msa0372810:CDS 45.0%
CAACAGATCTAGCCATCTCT+TGG - chr3_1:71561355-71561374 None:intergenic 45.0%
AGATCTGTTGAAGCCACTCA+AGG + chr3_1:71561365-71561384 Msa0372810:CDS 45.0%
CAGAAAGGAACTTCCTTGAG+TGG - chr3_1:71561381-71561400 None:intergenic 45.0%
CACTCAAGGAAGTTCCTTTC+TGG + chr3_1:71561379-71561398 Msa0372810:CDS 45.0%
ATGAACTTGGTCAGAACCTG+TGG + chr3_1:71561513-71561532 Msa0372810:CDS 45.0%
TCAACAGTCGAGTCCTTATC+TGG - chr3_1:71561562-71561581 None:intergenic 45.0%
TTAGTACACAGTGAGCGTAC+CGG + chr3_1:71561596-71561615 Msa0372810:CDS 45.0%
ACCGGCGAAGTTGTTAATAG+AGG + chr3_1:71561614-71561633 Msa0372810:CDS 45.0%
! TATTGAGTGCTGTGGTTCTG+GGG + chr3_1:71561757-71561776 Msa0372810:CDS 45.0%
TGATAGAGTGAGCCACTACT+TGG + chr3_1:71561820-71561839 Msa0372810:CDS 45.0%
GATTACTACTCTGGTGGAGA+AGG + chr3_1:71561862-71561881 Msa0372810:CDS 45.0%
! AACTTGTTCAGTCGTGTCAC+CGG + chr3_1:71561986-71562005 Msa0372810:CDS 45.0%
!! ACGTATTTTCGAGAGACCAC+CGG - chr3_1:71562008-71562027 None:intergenic 45.0%
ACAGGATCCTTCAACCTTTC+AGG - chr3_1:71562082-71562101 None:intergenic 45.0%
AGCCTCTGCACAAATTCAAC+AGG - chr3_1:71562100-71562119 None:intergenic 45.0%
TGCAGAGATTACCCTTGACA+AGG + chr3_1:71562306-71562325 Msa0372810:CDS 45.0%
GGTTCTATTCCGGTATTTGC+AGG + chr3_1:71562333-71562352 Msa0372810:CDS 45.0%
! CAGTTTCTGATGATGCTGAG+AGG + chr3_1:71562419-71562438 Msa0372810:CDS 45.0%
AGAACCTGCACAGTTAGTGT+AGG - chr3_1:71562580-71562599 None:intergenic 45.0%
CATGTCACACTAGATTGAGC+TGG - chr3_1:71562619-71562638 None:intergenic 45.0%
CACCTCTTCAAATCTGATGC+TGG - chr3_1:71562880-71562899 None:intergenic 45.0%
GGGAAGAAATGTCCTTAGGA+AGG + chr3_1:71562924-71562943 Msa0372810:CDS 45.0%
TCGCAAACATCTTTACCCAC+AGG - chr3_1:71562952-71562971 None:intergenic 45.0%
TGTGGGTAAAGATGTTTGCG+AGG + chr3_1:71562951-71562970 Msa0372810:CDS 45.0%
TGCACAAAAGGAATCGGAAC+TGG + chr3_1:71563041-71563060 Msa0372810:CDS 45.0%
GCACAACAATCTTATGGCTG+AGG + chr3_1:71563158-71563177 Msa0372810:CDS 45.0%
GCGATTCCTTCCAAATCCAA+CGG + chr3_1:71563200-71563219 Msa0372810:CDS 45.0%
! TCTCCTTGAGCGGGAATTTT+TGG + chr3_1:71563245-71563264 Msa0372810:CDS 45.0%
GTGATACTGATGTCGGTCCT+TGG + chr3_1:71558868-71558887 Msa0372810:intron 50.0%
GTTATGGCGTAAGCGCTATC+TGG + chr3_1:71559456-71559475 Msa0372810:intron 50.0%
AGCAAGCCATCATTGCGCAA+AGG + chr3_1:71560131-71560150 Msa0372810:intron 50.0%
CTACAGCCTTTGCGCAATGA+TGG - chr3_1:71560140-71560159 None:intergenic 50.0%
CTCTCCCAGTTGCTTAAGGT+AGG - chr3_1:71560418-71560437 None:intergenic 50.0%
!! AAGTGCTGATAGCAGCGCTA+TGG + chr3_1:71560764-71560783 Msa0372810:intron 50.0%
GATGGTAGATGCACAAGCTG+TGG + chr3_1:71561031-71561050 Msa0372810:intron 50.0%
GTAGATGCACAAGCTGTGGT+TGG + chr3_1:71561035-71561054 Msa0372810:intron 50.0%
TTTGGCGAGAGGCTATACTC+TGG + chr3_1:71561302-71561321 Msa0372810:CDS 50.0%
TTGGCGAGAGGCTATACTCT+GGG + chr3_1:71561303-71561322 Msa0372810:CDS 50.0%
TACTCTGGTGGAGAAGGAGA+TGG + chr3_1:71561868-71561887 Msa0372810:CDS 50.0%
ACAAGCAGCACCTTGCAAAG+CGG + chr3_1:71562380-71562399 Msa0372810:CDS 50.0%
! CAGACAAAAGCCGCTTTGCA+AGG - chr3_1:71562393-71562412 None:intergenic 50.0%
! CTTGCAAAGCGGCTTTTGTC+TGG + chr3_1:71562391-71562410 Msa0372810:CDS 50.0%
TAGGACCATCGCCTAACTCA+GGG - chr3_1:71562561-71562580 None:intergenic 50.0%
TGGTCCTACACTAACTGTGC+AGG + chr3_1:71562573-71562592 Msa0372810:CDS 50.0%
! ACTGTGCAGGTTCTGACAAC+AGG + chr3_1:71562586-71562605 Msa0372810:CDS 50.0%
! CTGTGCAGGTTCTGACAACA+GGG + chr3_1:71562587-71562606 Msa0372810:CDS 50.0%
! AGGTTCTGACAACAGGGTCT+TGG + chr3_1:71562593-71562612 Msa0372810:CDS 50.0%
! GTGCTGACATTTCTGTCGGA+AGG - chr3_1:71562645-71562664 None:intergenic 50.0%
!! GAAGAGGTGCCTGCAATCAT+TGG + chr3_1:71562891-71562910 Msa0372810:CDS 50.0%
!! GTGCCTGCAATCATTGGCTT+TGG + chr3_1:71562897-71562916 Msa0372810:CDS 50.0%
GGAATCGGAACTGGAGAAAC+TGG + chr3_1:71563050-71563069 Msa0372810:CDS 50.0%
! GTTGTGCTCAAGTTGCTTCC+TGG - chr3_1:71563145-71563164 None:intergenic 50.0%
GGATTGAGTCTCTCCTTGAG+CGG + chr3_1:71563235-71563254 Msa0372810:CDS 50.0%
GATTGAGTCTCTCCTTGAGC+GGG + chr3_1:71563236-71563255 Msa0372810:CDS 50.0%
GGCTGAGATGCGTCTGAATG+AGG + chr3_1:71561793-71561812 Msa0372810:CDS 55.0%
CAGTTCCAGGGTCCAAGTAG+TGG - chr3_1:71561835-71561854 None:intergenic 55.0%
TTGTTCAGTCGTGTCACCGG+TGG + chr3_1:71561989-71562008 Msa0372810:CDS 55.0%
AATGCCGACCACCCTGAGTT+AGG + chr3_1:71562547-71562566 Msa0372810:CDS 55.0%
ATCGCCTAACTCAGGGTGGT+CGG - chr3_1:71562554-71562573 None:intergenic 55.0%
GTAGGACCATCGCCTAACTC+AGG - chr3_1:71562562-71562581 None:intergenic 55.0%
ACCTCAGCACCCATAATGGC+AGG + chr3_1:71562689-71562708 Msa0372810:CDS 55.0%
! TCCTGCCATTATGGGTGCTG+AGG - chr3_1:71562693-71562712 None:intergenic 55.0%
TGTCCTTAGGAAGGAGCCTG+TGG + chr3_1:71562933-71562952 Msa0372810:CDS 55.0%
GTCCTTAGGAAGGAGCCTGT+GGG + chr3_1:71562934-71562953 Msa0372810:CDS 55.0%
TACCCACAGGCTCCTTCCTA+AGG - chr3_1:71562939-71562958 None:intergenic 55.0%
CGAGAGGCTATACTCTGGGC+TGG + chr3_1:71561307-71561326 Msa0372810:CDS 60.0%
GTGAGCCACTACTTGGACCC+TGG + chr3_1:71561827-71561846 Msa0372810:CDS 60.0%
GACCACCCTGAGTTAGGCGA+TGG + chr3_1:71562553-71562572 Msa0372810:CDS 60.0%
GACCATCGCCTAACTCAGGG+TGG - chr3_1:71562558-71562577 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71558299 71563556 71558299 ID=Msa0372810;Name=Msa0372810
chr3_1 mRNA 71558299 71563556 71558299 ID=Msa0372810-mRNA-1;Parent=Msa0372810;Name=Msa0372810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=102|1|1|1|0.5|0.33|3|245|732
chr3_1 exon 71558299 71558369 71558299 ID=Msa0372810-mRNA-1:exon:15745;Parent=Msa0372810-mRNA-1
chr3_1 exon 71558493 71558684 71558493 ID=Msa0372810-mRNA-1:exon:15746;Parent=Msa0372810-mRNA-1
chr3_1 exon 71561274 71563556 71561274 ID=Msa0372810-mRNA-1:exon:15747;Parent=Msa0372810-mRNA-1
chr3_1 five_prime_UTR 71558299 71558369 71558299 ID=Msa0372810-mRNA-1:five_prime_utr;Parent=Msa0372810-mRNA-1
chr3_1 five_prime_UTR 71558493 71558523 71558493 ID=Msa0372810-mRNA-1:five_prime_utr;Parent=Msa0372810-mRNA-1
chr3_1 CDS 71558524 71558684 71558524 ID=Msa0372810-mRNA-1:cds;Parent=Msa0372810-mRNA-1
chr3_1 CDS 71561274 71563311 71561274 ID=Msa0372810-mRNA-1:cds;Parent=Msa0372810-mRNA-1
chr3_1 three_prime_UTR 71563312 71563556 71563312 ID=Msa0372810-mRNA-1:three_prime_utr;Parent=Msa0372810-mRNA-1
Gene Sequence

>Msa0372810

ATGAGTAACCCAAGGAAGAGGAATTTTCGCGTTGAGGGTTTTAAGCATGTGGTTGTAATGGATCCGAGGTATGGTGATAAAACTTGGATCATTCTGGAGAATGCTATTCATCAGATTTATGATCATAATGCTAGTGGACTTAGCTTTGAAGAGCTTTACAGGAATGCTTACAATATGGTTCTTCACAAATTTGGCGAGAGGCTATACTCTGGGCTGGTTGCCACCATGACTTCTCATCTCCAAGAGATGGCTAGATCTGTTGAAGCCACTCAAGGAAGTTCCTTTCTGGAAGAATTAAACAGAAAGTGGGATGACCACAATAAGGCATTACAAATGATTAGAGACATTCTGATGTACATGGACAGGACTTATATCCAAACCATCAAGAAAACAACTGTTTATGAACTTGGTCAGAACCTGTGGAGAGAAAATGTTCTTCATTCAAACCAGATAAGGACTCGACTGTTGAATATGCTTTTGGAATTAGTACACAGTGAGCGTACCGGCGAAGTTGTTAATAGAGGACTGATTAGAAGTATAACAAAGATGCTAATGGATTTAGGTCCTTCTGTTTATGGGGAAGAATTTGAGAATCCTTTTCTGCAAGCTTCAACTGAGTTCTATAGGGCTGAATCACAGATATTTATTGAGTGCTGTGGTTCTGGGGATTATCTCAAGAAGGCTGAGATGCGTCTGAATGAGGAACTTGATAGAGTGAGCCACTACTTGGACCCTGGAACTGAAACGAAGATTACTACTCTGGTGGAGAAGGAGATGGTCGAAAATCACATGCTTAGATTAATCTATAAGGAGTCTTCTGGGTTAGTAAACATGCTTCGTGATGATAAATATGAAGATTTGGGTAGGATGTATAACTTGTTCAGTCGTGTCACCGGTGGTCTCTCGAAAATACGTGAAGTGATGACTTCATACGTCAAAGACTACGGTAAGCAGCTTGTTACTGATCCTGAAAGGTTGAAGGATCCTGTTGAATTTGTGCAGAGGCTCTCAGATGTGAAAGATAAATTCAACAAGATTATAGATTTGGCATTTAGTAATGACAAGTTGTTCCTGAAAGATCTGAATTCCTCATTCGAATTTTTCATTAACTTGAATCCCCGTATTCCAGAGTACATTTCACTCTTTGTAGACGATAAGCTTCGAAAAGGTCTAAAGGGAGTTAGTGAGGATGTTGCAGAGATTACCCTTGACAAGGTTATGGTTCTATTCCGGTATTTGCAGGAAAAAGATGTGTTTGAGAAGTATTACAAGCAGCACCTTGCAAAGCGGCTTTTGTCTGGAAAAACAGTTTCTGATGATGCTGAGAGGAGTCTCATAGTTAAGCTGAAGACAGAATGTGGATTCCAATTTACCGCAAAATTAGAGGGCATGTTTACAGACATGAAAACATCTGTAGACACGATGAAGAGCTTTAATGCCGACCACCCTGAGTTAGGCGATGGTCCTACACTAACTGTGCAGGTTCTGACAACAGGGTCTTGGCCAGCTCAATCTAGTGTGACATGTAACCTTCCGACAGAAATGTCAGCACTTTGCGAGAAATTTCGGTCATATTACCTCAGCACCCATAATGGCAGGAAATTGACGTGGCAAACTAATATGGGCACAGCAGACTTAAAAGCTACTTTTGGGAGTGGTCAGAAACATGAGTTAAATGTCTCCACCTATCAAATGTGTGTACTCATGCTGTTTAATAATGCTGATAGACTAAGCTACAAGGAAATTGAGCAAGCAACTGAGATTCCAGCATCAGATTTGAAGAGGTGCCTGCAATCATTGGCTTTGGTTAAGGGAAGAAATGTCCTTAGGAAGGAGCCTGTGGGTAAAGATGTTTGCGAGGATGACACATTCTATGTTAATGACAGGTTTAGCAGCAAACTGTATAAGATAAAAATAGGAACTGTTGTTGCACAAAAGGAATCGGAACTGGAGAAACTGGATACTCAACAAAAAGTGGAGGAGGATCGGAAGCCCCAGATTGAAGCAGCAATAGTGAGGATTATGAAATCCAGGAAGCAACTTGAGCACAACAATCTTATGGCTGAGGTCACACAGCAGTTGCAGTCGCGATTCCTTCCAAATCCAACGGATGTAAAGAAACGGATTGAGTCTCTCCTTGAGCGGGAATTTTTGGAAAGAGATGCTGTTGACAGAAAACTGTATCGATATCTTGCCTAG

Protein sequence

>Msa0372810

MSNPRKRNFRVEGFKHVVVMDPRYGDKTWIILENAIHQIYDHNASGLSFEELYRNAYNMVLHKFGERLYSGLVATMTSHLQEMARSVEATQGSSFLEELNRKWDDHNKALQMIRDILMYMDRTYIQTIKKTTVYELGQNLWRENVLHSNQIRTRLLNMLLELVHSERTGEVVNRGLIRSITKMLMDLGPSVYGEEFENPFLQASTEFYRAESQIFIECCGSGDYLKKAEMRLNEELDRVSHYLDPGTETKITTLVEKEMVENHMLRLIYKESSGLVNMLRDDKYEDLGRMYNLFSRVTGGLSKIREVMTSYVKDYGKQLVTDPERLKDPVEFVQRLSDVKDKFNKIIDLAFSNDKLFLKDLNSSFEFFINLNPRIPEYISLFVDDKLRKGLKGVSEDVAEITLDKVMVLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGFQFTAKLEGMFTDMKTSVDTMKSFNADHPELGDGPTLTVQVLTTGSWPAQSSVTCNLPTEMSALCEKFRSYYLSTHNGRKLTWQTNMGTADLKATFGSGQKHELNVSTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPVGKDVCEDDTFYVNDRFSSKLYKIKIGTVVAQKESELEKLDTQQKVEEDRKPQIEAAIVRIMKSRKQLEHNNLMAEVTQQLQSRFLPNPTDVKKRIESLLEREFLERDAVDRKLYRYLA*