AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0637900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637900 MtrunA17_Chr4g0021001 98.547 344 5 0 1 344 1 344 0.0 693
Msa0637900 MtrunA17_Chr7g0249531 39.130 115 56 4 1 111 1 105 2.12e-15 76.6
Msa0637900 MtrunA17_Chr7g0249531 27.941 136 92 2 135 265 209 343 2.65e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637900 AT5G51410.2 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0637900 AT5G51410.1 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0637900 AT5G51410.4 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0637900 AT5G51410.3 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0637900 AT5G51410.5 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0637900 AT3G03340.1 30.526 190 115 5 1 186 1 177 7.93e-17 81.3
Msa0637900 AT3G03340.1 35.220 159 78 7 116 263 198 342 1.50e-14 74.7
Msa0637900 AT3G03340.2 30.526 190 115 5 1 186 79 255 1.80e-16 80.5
Msa0637900 AT3G03340.2 35.220 159 78 7 116 263 276 420 2.64e-14 73.9
Msa0637900 AT5G17440.1 30.159 189 115 5 1 185 1 176 3.48e-16 79.3
Msa0637900 AT5G17440.1 33.846 130 71 3 117 241 199 318 2.87e-13 70.9
Msa0637900 AT5G17440.2 35.345 116 65 3 1 114 1 108 6.28e-16 77.4
Msa0637900 AT3G03340.3 30.526 190 115 5 1 186 1 177 7.42e-16 77.8
Msa0637900 AT3G03340.3 35.537 121 61 4 116 230 198 307 7.07e-13 68.9

Find 144 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCATCAATATTATTAA+TGG 0.112591 4_3:-31318030 Msa0637900:three_prime_UTR
CTTCTGTAGTTATGCTTAAT+AGG 0.142913 4_3:+31318244 None:intergenic
TAAGCAATAGTGGTAGTTTA+AGG 0.186323 4_3:+31316751 None:intergenic
TTGTAACTTCTCTCATAAAT+TGG 0.249696 4_3:-31317978 Msa0637900:three_prime_UTR
CTGTTAAAGAGTGTTAAATT+TGG 0.258347 4_3:-31317217 Msa0637900:three_prime_UTR
GCAAGATCGGCTTCAAATTT+AGG 0.292888 4_3:+31319351 None:intergenic
GAGTGTTAAATTTGGTGTTC+AGG 0.317319 4_3:-31317209 Msa0637900:three_prime_UTR
ACTGTCATTGAACTGGGCTT+TGG 0.322946 4_3:-31317305 Msa0637900:three_prime_UTR
CTGTCATTGAACTGGGCTTT+GGG 0.325212 4_3:-31317304 Msa0637900:three_prime_UTR
TCTTCTCTTGTTTGAGCTGT+TGG 0.326625 4_3:-31316862 Msa0637900:three_prime_UTR
TTCTGTAGTTATGCTTAATA+GGG 0.331026 4_3:+31318245 None:intergenic
TTTAATTGCTAGATAGCTTC+TGG 0.331096 4_3:-31317158 Msa0637900:three_prime_UTR
GGAAGTTTGTGGTTTCTATA+TGG 0.332001 4_3:-31321204 Msa0637900:CDS
CTCCGAAATGAAATACTATA+AGG 0.335764 4_3:-31316832 Msa0637900:three_prime_UTR
TGTTTGAATTGAACATTCAT+AGG 0.337016 4_3:-31317397 Msa0637900:three_prime_UTR
GACTGGAAAATACAGGTATT+TGG 0.338145 4_3:-31317375 Msa0637900:three_prime_UTR
TTCCTTATAGTATTTCATTT+CGG 0.342310 4_3:+31316830 None:intergenic
GGAGAAAATAAAGAACCTTC+TGG 0.354149 4_3:-31319095 Msa0637900:CDS
TCAAAACGTTTGATAAATCT+TGG 0.369243 4_3:-31317022 Msa0637900:three_prime_UTR
GTTGAATCTCTTGGTGAAGC+TGG 0.375956 4_3:-31319067 Msa0637900:CDS
TATTACCTTGAGGGAAAGAT+TGG 0.378519 4_3:-31317771 Msa0637900:three_prime_UTR
GACGGAGTGATTCAAGTGAT+AGG 0.379473 4_3:-31318456 Msa0637900:CDS
GAGTATGAGTACCATGGATT+CGG 0.383739 4_3:+31317559 None:intergenic
GCACGTATGCATCATGCCTT+GGG 0.388877 4_3:+31319373 None:intergenic
ATTGTGCGATTGGAGGTAAT+TGG 0.394665 4_3:-31317249 Msa0637900:three_prime_UTR
AAGCAATAGTGGTAGTTTAA+GGG 0.397561 4_3:+31316752 None:intergenic
TTCTTGCGGTGCTGTGTTGT+GGG 0.398348 4_3:+31321496 None:intergenic
GGTAAATAACCGCGTCGTGA+TGG 0.398405 4_3:-31317121 Msa0637900:three_prime_UTR
ATCTTACTGAATTTGTTGTT+AGG 0.399949 4_3:-31317588 Msa0637900:three_prime_UTR
CAATATTATTAATGGAGAAA+AGG 0.410537 4_3:-31318022 Msa0637900:three_prime_UTR
CTCGACGAACTCATGGGTTC+AGG 0.418323 4_3:-31321362 Msa0637900:intron
ATCTGAACAGTTGTCTGTCC+TGG 0.430404 4_3:-31319119 Msa0637900:CDS
GTGATTGTCATTGCCGCAAA+AGG 0.430567 4_3:-31317832 Msa0637900:three_prime_UTR
ATTTCTGATACAAATTAACT+TGG 0.432186 4_3:+31317345 None:intergenic
AGTTATGTTACATTCTCAAC+TGG 0.432864 4_3:-31317048 Msa0637900:three_prime_UTR
CTGGAACAAGTTGAATCTCT+TGG 0.435647 4_3:-31319076 Msa0637900:CDS
TGGGACGATAAGGAAGTTTG+TGG 0.435949 4_3:-31321215 Msa0637900:CDS
GGCACGTATGCATCATGCCT+TGG 0.438040 4_3:+31319372 None:intergenic
TGTGAATCTTATTACCTTGA+GGG 0.445694 4_3:-31317780 Msa0637900:three_prime_UTR
AGCTCTCCTCGACGAACTCA+TGG 0.445844 4_3:-31321369 Msa0637900:CDS
AGTATGAGTACCATGGATTC+GGG 0.446576 4_3:+31317560 None:intergenic
ATTCCGTACGAGTTACCAAT+TGG 0.447374 4_3:+31317471 None:intergenic
ATTACCTATATCTTCTAAAC+CGG 0.448487 4_3:+31317609 None:intergenic
TTGAATTGTGTTGTTAGCTA+TGG 0.449439 4_3:-31321402 Msa0637900:exon
CAGCATTTATAAACCTGTGC+TGG 0.451398 4_3:+31317676 None:intergenic
CTCACAAAACTGAGCAAGAT+CGG 0.453847 4_3:+31319338 None:intergenic
GGTAATCGAGATCGAGGAAG+GGG 0.456957 4_3:-31318340 Msa0637900:CDS
AATATTATTAATGGAGAAAA+GGG 0.457945 4_3:-31318021 Msa0637900:three_prime_UTR
AATGAAATCACGCAAGATAA+GGG 0.459719 4_3:+31316907 None:intergenic
GTAAATAACCGCGTCGTGAT+GGG 0.462868 4_3:-31317120 Msa0637900:three_prime_UTR
AAATGAAATCACGCAAGATA+AGG 0.465458 4_3:+31316906 None:intergenic
TCAGAATTTAAATTCAAAAG+AGG 0.469798 4_3:-31318174 Msa0637900:intron
CAAACAAGTTATTGTGCGAT+TGG 0.474312 4_3:-31317259 Msa0637900:three_prime_UTR
CATTAATAATATTGATGAAA+GGG 0.479290 4_3:+31318031 None:intergenic
TTTCTTGCGGTGCTGTGTTG+TGG 0.480632 4_3:+31321495 None:intergenic
TATCGAGAAATTCCACTACT+TGG 0.481237 4_3:+31318201 None:intergenic
AGAAGTGAGTTGGGACGATA+AGG 0.483654 4_3:-31321225 Msa0637900:CDS
ACTCGGATCGTGAAAGATCT+CGG 0.487797 4_3:-31318378 Msa0637900:CDS
GCAGAGACAGGTACCACAAT+CGG 0.490454 4_3:-31318282 Msa0637900:CDS
ATAATCACAGGTGATGGACT+TGG 0.491646 4_3:-31319221 Msa0637900:intron
TGTCCAATTGGTAACTCGTA+CGG 0.493034 4_3:-31317474 Msa0637900:three_prime_UTR
TCACTCCGTCTCTTTCTCTC+AGG 0.493705 4_3:+31318469 None:intergenic
TGATTGTCATTGCCGCAAAA+GGG 0.496260 4_3:-31317831 Msa0637900:three_prime_UTR
AGAAGAGCGAAGAAAACAAA+AGG 0.502735 4_3:-31318500 Msa0637900:CDS
GCTGTCAGTGGTGGCGGTGG+TGG 0.503620 4_3:+31319148 None:intergenic
GTCAACACGCGCAGTGATCT+CGG 0.505201 4_3:-31321155 Msa0637900:intron
TAGTGGTCATATGCATACTT+TGG 0.505395 4_3:-31316999 Msa0637900:three_prime_UTR
GCGAAGAAAACAAAAGGAGC+AGG 0.514193 4_3:-31318494 Msa0637900:CDS
CTCGGATCGTGAAAGATCTC+GGG 0.514400 4_3:-31318377 Msa0637900:CDS
ATCGAGATAGGCAGCGTGAT+AGG 0.514417 4_3:-31318414 Msa0637900:CDS
ATCTCTTGGTGAAGCTGGGA+AGG 0.515528 4_3:-31319062 Msa0637900:CDS
ACGGAGTGATTCAAGTGATA+GGG 0.516868 4_3:-31318455 Msa0637900:CDS
GTCATTGCCGCAAAAGGGGA+TGG 0.516933 4_3:-31317826 Msa0637900:three_prime_UTR
GGGTTACAAAGAAGTGAGTT+GGG 0.517957 4_3:-31321234 Msa0637900:CDS
GATACAAATTAACTTGGCAA+AGG 0.519130 4_3:+31317351 None:intergenic
TTGAATCTCTTGGTGAAGCT+GGG 0.520092 4_3:-31319066 Msa0637900:CDS
ATACAAATTAACTTGGCAAA+GGG 0.523536 4_3:+31317352 None:intergenic
GGAAAGCAGCATGTTGGCTA+TGG 0.524490 4_3:-31318693 Msa0637900:CDS
GAATTGAACATTCATAGGAC+TGG 0.525227 4_3:-31317392 Msa0637900:three_prime_UTR
GGGGTTACAAAGAAGTGAGT+TGG 0.527552 4_3:-31321235 Msa0637900:CDS
CTTATAGTATTTCATTTCGG+AGG 0.528339 4_3:+31316833 None:intergenic
GAGGTAATCGAGATCGAGGA+AGG 0.532185 4_3:-31318342 Msa0637900:CDS
GAGATTCAACTTGTTCCAGA+AGG 0.534767 4_3:+31319080 None:intergenic
AAGTTGATATAAACCAGCAC+AGG 0.535092 4_3:-31317689 Msa0637900:three_prime_UTR
TTCATAGGACTGGAAAATAC+AGG 0.535322 4_3:-31317382 Msa0637900:three_prime_UTR
TTAGGCATTTCCCGAATCCA+TGG 0.541017 4_3:-31317570 Msa0637900:three_prime_UTR
ACAAGTTATTGTGCGATTGG+AGG 0.541084 4_3:-31317256 Msa0637900:three_prime_UTR
AGCTGAAGCTCTTATGAGAA+AGG 0.541211 4_3:-31319032 Msa0637900:intron
CTTCTGGACATGATATGTGC+AGG 0.542392 4_3:-31317142 Msa0637900:three_prime_UTR
CTTGACTGAGGAAGAAAGAA+GGG 0.550258 4_3:-31321255 Msa0637900:CDS
CCATTAATAATATTGATGAA+AGG 0.552598 4_3:+31318030 None:intergenic
ACTTGACTGAGGAAGAAAGA+AGG 0.553452 4_3:-31321256 Msa0637900:CDS
GATTGCTAAGGAGAAGGCTA+AGG 0.554953 4_3:-31318554 Msa0637900:CDS
CGTTTGATAAATCTTGGTAG+TGG 0.556650 4_3:-31317016 Msa0637900:three_prime_UTR
TCAGCTGTCAGTGGTGGCGG+TGG 0.557872 4_3:+31319145 None:intergenic
GGAAGAAGAAAGATTGACTC+GGG 0.558620 4_3:-31318533 Msa0637900:CDS
AGAACTCAGTCTCATGTCGC+AGG 0.559633 4_3:-31318714 Msa0637900:CDS
GAAAGATCTCGGGAATATGA+AGG 0.563627 4_3:-31318367 Msa0637900:CDS
GACATTGAACTACAATCTGA+AGG 0.563713 4_3:-31317634 Msa0637900:three_prime_UTR
ATGTGAATCTTATTACCTTG+AGG 0.567214 4_3:-31317781 Msa0637900:three_prime_UTR
GCAGCATGTTGGCTATGGTA+TGG 0.570060 4_3:-31318688 Msa0637900:CDS
TCTCGGGAATATGAAGGTAG+AGG 0.580782 4_3:-31318361 Msa0637900:CDS
TTATAGTATTTCATTTCGGA+GGG 0.584383 4_3:+31316834 None:intergenic
ATTAATGGAGAAAAGGGTCG+AGG 0.584758 4_3:-31318015 Msa0637900:three_prime_UTR
CTATTAAGCATAACTACAGA+AGG 0.587485 4_3:-31318243 Msa0637900:CDS
GTTGTGTTTGCTCCAAGTAG+TGG 0.588205 4_3:-31318213 Msa0637900:three_prime_UTR
AAATACCAATCTTTCCCTCA+AGG 0.593035 4_3:+31317766 None:intergenic
GCTCTCCTCGACGAACTCAT+GGG 0.594522 4_3:-31321368 Msa0637900:CDS
GAACTACAATCTGAAGGCAC+CGG 0.594986 4_3:-31317628 Msa0637900:three_prime_UTR
AATTGGTAACTCGTACGGAA+TGG 0.596682 4_3:-31317469 Msa0637900:three_prime_UTR
GATTGTCATTGCCGCAAAAG+GGG 0.597028 4_3:-31317830 Msa0637900:three_prime_UTR
AACGTGATCTGCTCCGATTG+TGG 0.597216 4_3:+31318269 None:intergenic
TGACTTCATAAATGAATACA+AGG 0.598021 4_3:-31318661 Msa0637900:intron
AGGAAGAAGAAAGATTGACT+CGG 0.603218 4_3:-31318534 Msa0637900:CDS
GGTAGAGGTAATCGAGATCG+AGG 0.605352 4_3:-31318346 Msa0637900:CDS
GTCGCAGGAAAGCAGCATGT+TGG 0.607800 4_3:-31318699 Msa0637900:CDS
GGCACCGGTTTAGAAGATAT+AGG 0.609877 4_3:-31317613 Msa0637900:three_prime_UTR
AGGTAATCGAGATCGAGGAA+GGG 0.610688 4_3:-31318341 Msa0637900:CDS
AATGCTTCAGGAGAAGAAGA+TGG 0.611727 4_3:-31318787 Msa0637900:CDS
ATCGTGATAAAGATCGAGAT+AGG 0.617765 4_3:-31318426 Msa0637900:CDS
TCTGTAGTTATGCTTAATAG+GGG 0.619225 4_3:+31318246 None:intergenic
GGTATGTGGTTCGTTTCTCG+TGG 0.623915 4_3:-31318754 Msa0637900:CDS
ATGGCACTCTGTGAGGTATG+TGG 0.625178 4_3:-31318768 Msa0637900:CDS
ATGGAGAAAAGGGTCGAGGT+AGG 0.633613 4_3:-31318011 Msa0637900:three_prime_UTR
GGAGACACTTAATACTGAGA+AGG 0.634366 4_3:-31318844 Msa0637900:CDS
TGAACAGTTGTCTGTCCTGG+AGG 0.636803 4_3:-31319116 Msa0637900:CDS
AGGATCCTGAGAGAAAGAGA+CGG 0.640354 4_3:-31318474 Msa0637900:CDS
AATTATGAGTATGAGTACCA+TGG 0.643720 4_3:+31317553 None:intergenic
GTGTTGACGAAGAGATCGTG+AGG 0.645071 4_3:+31321170 None:intergenic
TTGTTTCTCCCATCACGACG+CGG 0.647983 4_3:+31317112 None:intergenic
ACGAGAACGTCTTAATCAAG+AGG 0.649224 4_3:-31319179 Msa0637900:CDS
ATGGTTTCTAGGTTGAGGAA+CGG 0.651338 4_3:-31318316 Msa0637900:CDS
GAAGAAGATGGCACTCTGTG+AGG 0.661944 4_3:-31318775 Msa0637900:CDS
AGAACGTCTTAATCAAGAGG+TGG 0.666877 4_3:-31319176 Msa0637900:CDS
TTTGTATCTAGGGTTTCTTG+CGG 0.666965 4_3:+31321482 None:intergenic
TTCAGCTCGAAACTTGACTG+AGG 0.672653 4_3:-31321267 Msa0637900:intron
TTGACTGAGGAAGAAAGAAG+GGG 0.676867 4_3:-31321254 Msa0637900:CDS
CACGTATGCATCATGCCTTG+GGG 0.690040 4_3:+31319374 None:intergenic
GTAATCGAGATCGAGGAAGG+GGG 0.692537 4_3:-31318339 Msa0637900:CDS
TAGGTACAGAGATAGAGACT+CGG 0.703615 4_3:-31318395 Msa0637900:CDS
AAAACAGATAGAGCGAAAGG+GGG 0.711148 4_3:-31321548 Msa0637900:five_prime_UTR
TGTTGACGAAGAGATCGTGA+GGG 0.727468 4_3:+31321171 None:intergenic
CTGAACCCATGAGTTCGTCG+AGG 0.733418 4_3:+31321363 None:intergenic
TTGGATAGAAGAGTAAAACG+TGG 0.775215 4_3:-31319202 Msa0637900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTATATTAAATATA+TGG - chr4_3:31317980-31317999 Msa0637900:three_prime_UTR 0.0%
!! AATTATTTATAAGTATGTTA+AGG - chr4_3:31317395-31317414 Msa0637900:three_prime_UTR 10.0%
!! ATAAATGTATAGATTAATTT+AGG + chr4_3:31319725-31319744 None:intergenic 10.0%
!!! CAAGTTTTTTTTTTTTTTTA+CGG + chr4_3:31320920-31320939 None:intergenic 10.0%
!!! AATTTAGAATTTTGTATCTA+GGG + chr4_3:31316881-31316900 None:intergenic 15.0%
!!! TAATTTAGAATTTTGTATCT+AGG + chr4_3:31316882-31316901 None:intergenic 15.0%
!! GTTCAAAAAATTATTAATCT+TGG - chr4_3:31318035-31318054 Msa0637900:three_prime_UTR 15.0%
!! AAGGTTAACAAAAAAAATTA+GGG + chr4_3:31318565-31318584 None:intergenic 15.0%
!! AAAGGTTAACAAAAAAAATT+AGG + chr4_3:31318566-31318585 None:intergenic 15.0%
!! TTGACATTCAAATTTAATAT+GGG + chr4_3:31318602-31318621 None:intergenic 15.0%
!! ATTGACATTCAAATTTAATA+TGG + chr4_3:31318603-31318622 None:intergenic 15.0%
!!! CTTATATAAATATGTGTTTT+TGG - chr4_3:31320219-31320238 Msa0637900:intron 15.0%
!! CATTAATAATATTGATGAAA+GGG + chr4_3:31320322-31320341 None:intergenic 15.0%
!! AATATTATTAATGGAGAAAA+GGG - chr4_3:31320329-31320348 Msa0637900:intron 15.0%
!!! ATTAAATAGTTTGAGATTTC+TGG - chr4_3:31318358-31318377 Msa0637900:CDS 20.0%
!! AAAAAATTAGGGTATACTTA+CGG + chr4_3:31318554-31318573 None:intergenic 20.0%
!!! AAGGATAAGAAACTTTTAAA+GGG + chr4_3:31318700-31318719 None:intergenic 20.0%
!!! AAAGGATAAGAAACTTTTAA+AGG + chr4_3:31318701-31318720 None:intergenic 20.0%
!!! GCATTTTATGCTTTATTTAT+CGG + chr4_3:31318865-31318884 None:intergenic 20.0%
!! GAAATCAAAAAACAATTTAC+TGG + chr4_3:31318887-31318906 None:intergenic 20.0%
!!! ATTAACACTTTTTCATTTTG+AGG + chr4_3:31319546-31319565 None:intergenic 20.0%
!! AATGAAATCATTCTTGAAAT+TGG - chr4_3:31319747-31319766 Msa0637900:intron 20.0%
!! TCAGAATTTAAATTCAAAAG+AGG - chr4_3:31320176-31320195 Msa0637900:intron 20.0%
!! CACATATTTATATAAGTCTT+GGG + chr4_3:31320215-31320234 None:intergenic 20.0%
!! ACACATATTTATATAAGTCT+TGG + chr4_3:31320216-31320235 None:intergenic 20.0%
!! CCATTAATAATATTGATGAA+AGG + chr4_3:31320323-31320342 None:intergenic 20.0%
!! CCTTTCATCAATATTATTAA+TGG - chr4_3:31320320-31320339 Msa0637900:intron 20.0%
!! CAATATTATTAATGGAGAAA+AGG - chr4_3:31320328-31320347 Msa0637900:intron 20.0%
!! AGTAATGAAACATACAAAAA+AGG + chr4_3:31320631-31320650 None:intergenic 20.0%
!!! ACTCATACTCATAATTTTAT+TGG - chr4_3:31320804-31320823 Msa0637900:intron 20.0%
!!! CTCATACTCATAATTTTATT+GGG - chr4_3:31320805-31320824 Msa0637900:intron 20.0%
!!! TCATACTCATAATTTTATTG+GGG - chr4_3:31320806-31320825 Msa0637900:intron 20.0%
!!! TTTTTTTTTTTTTACGGATG+AGG + chr4_3:31320914-31320933 None:intergenic 20.0%
!! ATTTCTGATACAAATTAACT+TGG + chr4_3:31321008-31321027 None:intergenic 20.0%
!! TTCCTTATAGTATTTCATTT+CGG + chr4_3:31321523-31321542 None:intergenic 20.0%
! AAATGTTACAAATGAGAATG+AGG - chr4_3:31317294-31317313 Msa0637900:three_prime_UTR 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:31317496-31317515 None:intergenic 25.0%
!!! TGCAATGTTTTTGAAAATCA+CGG + chr4_3:31317735-31317754 None:intergenic 25.0%
!!! TTTGACTTTTTGTTCGTATT+TGG - chr4_3:31317910-31317929 Msa0637900:three_prime_UTR 25.0%
!!! TTTTTGTTCGTATTTGGAAT+AGG - chr4_3:31317916-31317935 Msa0637900:three_prime_UTR 25.0%
!! TAAGATATTTAGAGTTGAAG+AGG + chr4_3:31318195-31318214 None:intergenic 25.0%
!!! AATTTCATGACTTGTTCAAT+TGG - chr4_3:31318620-31318639 Msa0637900:intron 25.0%
!!! ATTTCATGACTTGTTCAATT+GGG - chr4_3:31318621-31318640 Msa0637900:intron 25.0%
! TGACAAAGTAAAATATGCAA+AGG + chr4_3:31318719-31318738 None:intergenic 25.0%
!! ATATTTTACTTTGTCATGCA+TGG - chr4_3:31318723-31318742 Msa0637900:CDS 25.0%
!! TTTTTAATGTAGAATGAGGA+TGG + chr4_3:31319063-31319082 None:intergenic 25.0%
!!! ACTGTTTTTAATGTAGAATG+AGG + chr4_3:31319067-31319086 None:intergenic 25.0%
! AATAGTATACACAAGGAAAA+GGG + chr4_3:31319363-31319382 None:intergenic 25.0%
! AATCATCAATAGTATACACA+AGG + chr4_3:31319370-31319389 None:intergenic 25.0%
!!! CTCGTGAATTTATTTTTTTG+CGG - chr4_3:31319465-31319484 Msa0637900:intron 25.0%
!!! TCGTGAATTTATTTTTTTGC+GGG - chr4_3:31319466-31319485 Msa0637900:intron 25.0%
! TGACTTCATAAATGAATACA+AGG - chr4_3:31319689-31319708 Msa0637900:intron 25.0%
! TTCTGTAGTTATGCTTAATA+GGG + chr4_3:31320108-31320127 None:intergenic 25.0%
! ATATAAGTCTTGGGATATTA+AGG + chr4_3:31320206-31320225 None:intergenic 25.0%
!! TTAAGTTTTCTCATCATCAA+AGG - chr4_3:31320246-31320265 Msa0637900:intron 25.0%
!! TAAGTTTTCTCATCATCAAA+GGG - chr4_3:31320247-31320266 Msa0637900:intron 25.0%
! TTGTAACTTCTCTCATAAAT+TGG - chr4_3:31320372-31320391 Msa0637900:intron 25.0%
! ATTACCTATATCTTCTAAAC+CGG + chr4_3:31320744-31320763 None:intergenic 25.0%
!!! ATCTTACTGAATTTGTTGTT+AGG - chr4_3:31320762-31320781 Msa0637900:intron 25.0%
! TGTTTGAATTGAACATTCAT+AGG - chr4_3:31320953-31320972 Msa0637900:intron 25.0%
!! ATACAAATTAACTTGGCAAA+GGG + chr4_3:31321001-31321020 None:intergenic 25.0%
!!! CTGTTAAAGAGTGTTAAATT+TGG - chr4_3:31321133-31321152 Msa0637900:intron 25.0%
! TCAAAACGTTTGATAAATCT+TGG - chr4_3:31321328-31321347 Msa0637900:intron 25.0%
! TTATAGTATTTCATTTCGGA+GGG + chr4_3:31321519-31321538 None:intergenic 25.0%
ATAAAAACAGATAGAGCGAA+AGG - chr4_3:31316799-31316818 Msa0637900:three_prime_UTR 30.0%
TAAAAACAGATAGAGCGAAA+GGG - chr4_3:31316800-31316819 Msa0637900:three_prime_UTR 30.0%
! TTGAATTGTGTTGTTAGCTA+TGG - chr4_3:31316948-31316967 Msa0637900:three_prime_UTR 30.0%
CTAAAATAAGCCAATCCAAA+CGG + chr4_3:31317333-31317352 None:intergenic 30.0%
AACTTATGAACTATGAAGCA+TGG - chr4_3:31317435-31317454 Msa0637900:three_prime_UTR 30.0%
TATTCATAAGCTATGAAGCA+CGG + chr4_3:31317604-31317623 None:intergenic 30.0%
TTCATAAGCTCAATCTAAAC+AGG - chr4_3:31317688-31317707 Msa0637900:three_prime_UTR 30.0%
!! GCAATGTTTTTGAAAATCAC+GGG + chr4_3:31317734-31317753 None:intergenic 30.0%
TGAATTGACACAAAATTCCA+TGG + chr4_3:31317778-31317797 None:intergenic 30.0%
ACGAACAAAAAGTCAAAGAT+TGG + chr4_3:31317907-31317926 None:intergenic 30.0%
TAATACAGTAATTGACACCT+AGG + chr4_3:31318120-31318139 None:intergenic 30.0%
AAGTTCATTCTGTTTCATGT+AGG + chr4_3:31318151-31318170 None:intergenic 30.0%
CTTATTAACTGTGATAGCTT+TGG - chr4_3:31318211-31318230 Msa0637900:three_prime_UTR 30.0%
!! CTTACTTTTCTTTCAACTTC+GGG + chr4_3:31318303-31318322 None:intergenic 30.0%
!! GCTTACTTTTCTTTCAACTT+CGG + chr4_3:31318304-31318323 None:intergenic 30.0%
!! TTAGTTTTCAGACAGTAATC+AGG + chr4_3:31318426-31318445 None:intergenic 30.0%
!! TTTCATGACTTGTTCAATTG+GGG - chr4_3:31318622-31318641 Msa0637900:intron 30.0%
!! CTTTTAAAGGGAAGCAATAT+TGG + chr4_3:31318688-31318707 None:intergenic 30.0%
AACATATGCCTCTGATAATT+TGG - chr4_3:31318754-31318773 Msa0637900:CDS 30.0%
! CTTTATTTATCGGCATATCA+TGG + chr4_3:31318855-31318874 None:intergenic 30.0%
AAACTCAGTTACACATTTAC+GGG + chr4_3:31318909-31318928 None:intergenic 30.0%
GAAACTCAGTTACACATTTA+CGG + chr4_3:31318910-31318929 None:intergenic 30.0%
!! TGTTTTCTGGTAATAATCAC+AGG - chr4_3:31319117-31319136 Msa0637900:CDS 30.0%
CAATAGTATACACAAGGAAA+AGG + chr4_3:31319364-31319383 None:intergenic 30.0%
ACAAGTTCATTTCTACGATT+GGG + chr4_3:31319410-31319429 None:intergenic 30.0%
!!! CGTGAATTTATTTTTTTGCG+GGG - chr4_3:31319467-31319486 Msa0637900:intron 30.0%
!! TGAAAAAGTGTTAATGCTTC+AGG - chr4_3:31319551-31319570 Msa0637900:intron 30.0%
! ATCTTCTTTTCAGATTGCTA+AGG - chr4_3:31319784-31319803 Msa0637900:intron 30.0%
TCTGTAGTTATGCTTAATAG+GGG + chr4_3:31320107-31320126 None:intergenic 30.0%
CTTCTGTAGTTATGCTTAAT+AGG + chr4_3:31320109-31320128 None:intergenic 30.0%
CTATTAAGCATAACTACAGA+AGG - chr4_3:31320107-31320126 Msa0637900:intron 30.0%
! CTTTCTTTACATGCATTTTC+TGG - chr4_3:31320451-31320470 Msa0637900:intron 30.0%
ATGTGAATCTTATTACCTTG+AGG - chr4_3:31320569-31320588 Msa0637900:intron 30.0%
TGTGAATCTTATTACCTTGA+GGG - chr4_3:31320570-31320589 Msa0637900:intron 30.0%
AATTATGAGTATGAGTACCA+TGG + chr4_3:31320800-31320819 None:intergenic 30.0%
! AGTAAAACTGCTAAGTTTTG+AGG + chr4_3:31320854-31320873 None:intergenic 30.0%
!! CAGTTTTACTTTTGTCCAAT+TGG - chr4_3:31320864-31320883 Msa0637900:intron 30.0%
! GATACAAATTAACTTGGCAA+AGG + chr4_3:31321002-31321021 None:intergenic 30.0%
ATGAAAAACTGTCATTGAAC+TGG - chr4_3:31321038-31321057 Msa0637900:intron 30.0%
TGAAAAACTGTCATTGAACT+GGG - chr4_3:31321039-31321058 Msa0637900:intron 30.0%
TTTAATTGCTAGATAGCTTC+TGG - chr4_3:31321192-31321211 Msa0637900:CDS 30.0%
AGTTATGTTACATTCTCAAC+TGG - chr4_3:31321302-31321321 Msa0637900:intron 30.0%
AATGAAATCACGCAAGATAA+GGG + chr4_3:31321446-31321465 None:intergenic 30.0%
AAATGAAATCACGCAAGATA+AGG + chr4_3:31321447-31321466 None:intergenic 30.0%
CTTATAGTATTTCATTTCGG+AGG + chr4_3:31321520-31321539 None:intergenic 30.0%
CTCCGAAATGAAATACTATA+AGG - chr4_3:31321518-31321537 Msa0637900:five_prime_UTR 30.0%
AAAAACAGATAGAGCGAAAG+GGG - chr4_3:31316801-31316820 Msa0637900:three_prime_UTR 35.0%
! TTTGTATCTAGGGTTTCTTG+CGG + chr4_3:31316871-31316890 None:intergenic 35.0%
GGAAGTTTGTGGTTTCTATA+TGG - chr4_3:31317146-31317165 Msa0637900:three_prime_UTR 35.0%
GTTACAAATGAGAATGAGGA+AGG - chr4_3:31317298-31317317 Msa0637900:three_prime_UTR 35.0%
!! TTAACTGTGATAGCTTTGGT+TGG - chr4_3:31318215-31318234 Msa0637900:three_prime_UTR 35.0%
! AACTTCGGGTCATGTATTTT+CGG + chr4_3:31318289-31318308 None:intergenic 35.0%
AAAGGGAAGCAATATTGGTA+CGG + chr4_3:31318683-31318702 None:intergenic 35.0%
TACGCATACCAAATTATCAG+AGG + chr4_3:31318765-31318784 None:intergenic 35.0%
!! TGCTCAGTTTTGTGAGAAAT+TGG - chr4_3:31319019-31319038 Msa0637900:intron 35.0%
!! CAGTTTTGTGAGAAATTGGT+AGG - chr4_3:31319023-31319042 Msa0637900:intron 35.0%
! CTGATGTTCTTCATGTTTTC+TGG - chr4_3:31319104-31319123 Msa0637900:CDS 35.0%
TTGGATAGAAGAGTAAAACG+TGG - chr4_3:31319148-31319167 Msa0637900:CDS 35.0%
GGAGAAAATAAAGAACCTTC+TGG - chr4_3:31319255-31319274 Msa0637900:intron 35.0%
CAAGTTCATTTCTACGATTG+GGG + chr4_3:31319409-31319428 None:intergenic 35.0%
CACAAGTTCATTTCTACGAT+TGG + chr4_3:31319411-31319430 None:intergenic 35.0%
! TTTTCAGATTGCTAAGGAGA+AGG - chr4_3:31319790-31319809 Msa0637900:intron 35.0%
AGGAAGAAGAAAGATTGACT+CGG - chr4_3:31319816-31319835 Msa0637900:intron 35.0%
AGAAGAGCGAAGAAAACAAA+AGG - chr4_3:31319850-31319869 Msa0637900:intron 35.0%
ATCGTGATAAAGATCGAGAT+AGG - chr4_3:31319924-31319943 Msa0637900:intron 35.0%
TATCGAGAAATTCCACTACT+TGG + chr4_3:31320152-31320171 None:intergenic 35.0%
!!! GATGGTTTACTCTTGTTTTG+AGG - chr4_3:31320542-31320561 Msa0637900:intron 35.0%
TATTACCTTGAGGGAAAGAT+TGG - chr4_3:31320579-31320598 Msa0637900:intron 35.0%
AAATACCAATCTTTCCCTCA+AGG + chr4_3:31320587-31320606 None:intergenic 35.0%
!! AAGTTGATATAAACCAGCAC+AGG - chr4_3:31320661-31320680 Msa0637900:intron 35.0%
GACATTGAACTACAATCTGA+AGG - chr4_3:31320716-31320735 Msa0637900:intron 35.0%
!!! AAAACTGCTAAGTTTTGAGG+TGG + chr4_3:31320851-31320870 None:intergenic 35.0%
GAATTGAACATTCATAGGAC+TGG - chr4_3:31320958-31320977 Msa0637900:intron 35.0%
TTCATAGGACTGGAAAATAC+AGG - chr4_3:31320968-31320987 Msa0637900:intron 35.0%
GACTGGAAAATACAGGTATT+TGG - chr4_3:31320975-31320994 Msa0637900:intron 35.0%
CAAACAAGTTATTGTGCGAT+TGG - chr4_3:31321091-31321110 Msa0637900:intron 35.0%
!! GAGTGTTAAATTTGGTGTTC+AGG - chr4_3:31321141-31321160 Msa0637900:intron 35.0%
CGTTTGATAAATCTTGGTAG+TGG - chr4_3:31321334-31321353 Msa0637900:intron 35.0%
TAGTGGTCATATGCATACTT+TGG - chr4_3:31321351-31321370 Msa0637900:intron 35.0%
!!! GTCGCTCATTTTTATTTTCG+AGG + chr4_3:31321406-31321425 None:intergenic 35.0%
AAAACAGATAGAGCGAAAGG+GGG - chr4_3:31316802-31316821 Msa0637900:three_prime_UTR 40.0%
ACTTGACTGAGGAAGAAAGA+AGG - chr4_3:31317094-31317113 Msa0637900:three_prime_UTR 40.0%
CTTGACTGAGGAAGAAAGAA+GGG - chr4_3:31317095-31317114 Msa0637900:three_prime_UTR 40.0%
TTGACTGAGGAAGAAAGAAG+GGG - chr4_3:31317096-31317115 Msa0637900:three_prime_UTR 40.0%
GGGTTACAAAGAAGTGAGTT+GGG - chr4_3:31317116-31317135 Msa0637900:three_prime_UTR 40.0%
ATGAGAATGAGGAAGGACTT+TGG - chr4_3:31317305-31317324 Msa0637900:three_prime_UTR 40.0%
TGAGAATGAGGAAGGACTTT+GGG - chr4_3:31317306-31317325 Msa0637900:three_prime_UTR 40.0%
TACAAGTGTTAGTGTCGTGT+CGG - chr4_3:31317538-31317557 Msa0637900:three_prime_UTR 40.0%
GTAGTGTGATATTGCATCCA+TGG - chr4_3:31317758-31317777 Msa0637900:three_prime_UTR 40.0%
! CAAAAAGTCAAAGATTGGCC+AGG + chr4_3:31317902-31317921 None:intergenic 40.0%
TAACGTGTTTAAACCGATGC+AGG - chr4_3:31318256-31318275 Msa0637900:CDS 40.0%
! ACTTCGGGTCATGTATTTTC+GGG + chr4_3:31318288-31318307 None:intergenic 40.0%
! GTGTTGCTCTTCTATCTATG+TGG - chr4_3:31318492-31318511 Msa0637900:CDS 40.0%
GTTAAGCTATCTTAGTGCTG+TGG - chr4_3:31318514-31318533 Msa0637900:CDS 40.0%
!!! TCAGTTTTGAGAATTCCCCA+AGG - chr4_3:31318961-31318980 Msa0637900:intron 40.0%
! GCAAGATCGGCTTCAAATTT+AGG + chr4_3:31319002-31319021 None:intergenic 40.0%
CTCACAAAACTGAGCAAGAT+CGG + chr4_3:31319015-31319034 None:intergenic 40.0%
GAACATCAGCATACAAGCAA+AGG + chr4_3:31319093-31319112 None:intergenic 40.0%
CTGGTAATAATCACAGGTGA+TGG - chr4_3:31319123-31319142 Msa0637900:CDS 40.0%
!! ATAATCACAGGTGATGGACT+TGG - chr4_3:31319129-31319148 Msa0637900:CDS 40.0%
ACGAGAACGTCTTAATCAAG+AGG - chr4_3:31319171-31319190 Msa0637900:CDS 40.0%
AGAACGTCTTAATCAAGAGG+TGG - chr4_3:31319174-31319193 Msa0637900:CDS 40.0%
!! TCAGATTTTTCAGCTGTCAG+TGG + chr4_3:31319217-31319236 None:intergenic 40.0%
!!! GGTTCTTTATTTTCTCCTCC+AGG + chr4_3:31319252-31319271 None:intergenic 40.0%
! GAGATTCAACTTGTTCCAGA+AGG + chr4_3:31319273-31319292 None:intergenic 40.0%
! CTGGAACAAGTTGAATCTCT+TGG - chr4_3:31319274-31319293 Msa0637900:intron 40.0%
TTGAATCTCTTGGTGAAGCT+GGG - chr4_3:31319284-31319303 Msa0637900:intron 40.0%
AGCTGAAGCTCTTATGAGAA+AGG - chr4_3:31319318-31319337 Msa0637900:intron 40.0%
TATACACAAGGAAAAGGGTG+TGG + chr4_3:31319358-31319377 None:intergenic 40.0%
ATTCACGAGAATCTCAGTCA+CGG + chr4_3:31319454-31319473 None:intergenic 40.0%
!! TTGCGGGGTATTTTTCTTTC+AGG - chr4_3:31319482-31319501 Msa0637900:intron 40.0%
GGAGACACTTAATACTGAGA+AGG - chr4_3:31319506-31319525 Msa0637900:intron 40.0%
AATGCTTCAGGAGAAGAAGA+TGG - chr4_3:31319563-31319582 Msa0637900:intron 40.0%
! GGAAGAAGAAAGATTGACTC+GGG - chr4_3:31319817-31319836 Msa0637900:intron 40.0%
!! AAGATTGACTCGGGAAAAAG+AGG - chr4_3:31319826-31319845 Msa0637900:intron 40.0%
ACGGAGTGATTCAAGTGATA+GGG - chr4_3:31319895-31319914 Msa0637900:intron 40.0%
TAGGTACAGAGATAGAGACT+CGG - chr4_3:31319955-31319974 Msa0637900:intron 40.0%
GAAAGATCTCGGGAATATGA+AGG - chr4_3:31319983-31320002 Msa0637900:intron 40.0%
! ATGGTTTCTAGGTTGAGGAA+CGG - chr4_3:31320034-31320053 Msa0637900:intron 40.0%
AGGTTGAGGAACGGAAAAAA+TGG - chr4_3:31320043-31320062 Msa0637900:intron 40.0%
GAAAAAATGGAAGCAGAGAC+AGG - chr4_3:31320056-31320075 Msa0637900:CDS 40.0%
!! AAAGCTCTGAGATGGGAAAA+AGG + chr4_3:31320281-31320300 None:intergenic 40.0%
!! TCTCAAGAAAGCTCTGAGAT+GGG + chr4_3:31320288-31320307 None:intergenic 40.0%
ATTAATGGAGAAAAGGGTCG+AGG - chr4_3:31320335-31320354 Msa0637900:intron 40.0%
TGATTGTCATTGCCGCAAAA+GGG - chr4_3:31320519-31320538 Msa0637900:intron 40.0%
CAGCATTTATAAACCTGTGC+TGG + chr4_3:31320677-31320696 None:intergenic 40.0%
AGTATGAGTACCATGGATTC+GGG + chr4_3:31320793-31320812 None:intergenic 40.0%
GAGTATGAGTACCATGGATT+CGG + chr4_3:31320794-31320813 None:intergenic 40.0%
! TGTCCAATTGGTAACTCGTA+CGG - chr4_3:31320876-31320895 Msa0637900:intron 40.0%
ATTCCGTACGAGTTACCAAT+TGG + chr4_3:31320882-31320901 None:intergenic 40.0%
! AATTGGTAACTCGTACGGAA+TGG - chr4_3:31320881-31320900 Msa0637900:intron 40.0%
ACAAGTTATTGTGCGATTGG+AGG - chr4_3:31321094-31321113 Msa0637900:intron 40.0%
ATTGTGCGATTGGAGGTAAT+TGG - chr4_3:31321101-31321120 Msa0637900:intron 40.0%
! TCTTCTCTTGTTTGAGCTGT+TGG - chr4_3:31321488-31321507 Msa0637900:five_prime_UTR 40.0%
! CGATCGATTTATCGAGTGAG+TGG + chr4_3:31317042-31317061 None:intergenic 45.0%
TTCAGCTCGAAACTTGACTG+AGG - chr4_3:31317083-31317102 Msa0637900:three_prime_UTR 45.0%
GGGGTTACAAAGAAGTGAGT+TGG - chr4_3:31317115-31317134 Msa0637900:three_prime_UTR 45.0%
! AGAAGTGAGTTGGGACGATA+AGG - chr4_3:31317125-31317144 Msa0637900:three_prime_UTR 45.0%
TGGGACGATAAGGAAGTTTG+TGG - chr4_3:31317135-31317154 Msa0637900:three_prime_UTR 45.0%
TGTTGACGAAGAGATCGTGA+GGG + chr4_3:31317182-31317201 None:intergenic 45.0%
TGAAGCATGGATACAGACAC+TGG - chr4_3:31317448-31317467 Msa0637900:three_prime_UTR 45.0%
GATTAGGTGTGTCCTGTAGT+CGG + chr4_3:31317571-31317590 None:intergenic 45.0%
TATGAAGCACGGATACTCCT+CGG + chr4_3:31317593-31317612 None:intergenic 45.0%
! GGGCTGCAGTTGATTTCAAA+GGG + chr4_3:31317714-31317733 None:intergenic 45.0%
TCAACCTAGACAGTCAATCC+TGG - chr4_3:31317815-31317834 Msa0637900:three_prime_UTR 45.0%
TTTGCCAGGATTGACTGTCT+AGG + chr4_3:31317822-31317841 None:intergenic 45.0%
ATGGGTAGCATACGCTCAAA+AGG + chr4_3:31318584-31318603 None:intergenic 45.0%
! GACTTGTTCAATTGGGGCTA+TGG - chr4_3:31318628-31318647 Msa0637900:intron 45.0%
TTGGTACGGTGCACTTCTAA+TGG + chr4_3:31318669-31318688 None:intergenic 45.0%
ACAATAGAGCAACCATGTGC+AGG + chr4_3:31318805-31318824 None:intergenic 45.0%
GAATGAGGATGGCAACAGAT+AGG + chr4_3:31319052-31319071 None:intergenic 45.0%
!! GATTTTTCAGCTGTCAGTGG+TGG + chr4_3:31319214-31319233 None:intergenic 45.0%
ATCTGAACAGTTGTCTGTCC+TGG - chr4_3:31319231-31319250 Msa0637900:intron 45.0%
GTTGAATCTCTTGGTGAAGC+TGG - chr4_3:31319283-31319302 Msa0637900:intron 45.0%
!! CGGGGTATTTTTCTTTCAGG+TGG - chr4_3:31319485-31319504 Msa0637900:intron 45.0%
GATTGCTAAGGAGAAGGCTA+AGG - chr4_3:31319796-31319815 Msa0637900:intron 45.0%
GCGAAGAAAACAAAAGGAGC+AGG - chr4_3:31319856-31319875 Msa0637900:intron 45.0%
AGGATCCTGAGAGAAAGAGA+CGG - chr4_3:31319876-31319895 Msa0637900:intron 45.0%
GACGGAGTGATTCAAGTGAT+AGG - chr4_3:31319894-31319913 Msa0637900:intron 45.0%
ACTCGGATCGTGAAAGATCT+CGG - chr4_3:31319972-31319991 Msa0637900:intron 45.0%
TCTCGGGAATATGAAGGTAG+AGG - chr4_3:31319989-31320008 Msa0637900:intron 45.0%
AGGTAATCGAGATCGAGGAA+GGG - chr4_3:31320009-31320028 Msa0637900:intron 45.0%
GTTGTGTTTGCTCCAAGTAG+TGG - chr4_3:31320137-31320156 Msa0637900:intron 45.0%
!! GTCTCAAGAAAGCTCTGAGA+TGG + chr4_3:31320289-31320308 None:intergenic 45.0%
GTGATTGTCATTGCCGCAAA+AGG - chr4_3:31320518-31320537 Msa0637900:intron 45.0%
GATTGTCATTGCCGCAAAAG+GGG - chr4_3:31320520-31320539 Msa0637900:intron 45.0%
! GAGTAAACCATCCCCTTTTG+CGG + chr4_3:31320534-31320553 None:intergenic 45.0%
! GAACTACAATCTGAAGGCAC+CGG - chr4_3:31320722-31320741 Msa0637900:intron 45.0%
!! GGCACCGGTTTAGAAGATAT+AGG - chr4_3:31320737-31320756 Msa0637900:intron 45.0%
TTAGGCATTTCCCGAATCCA+TGG - chr4_3:31320780-31320799 Msa0637900:intron 45.0%
ACTGTCATTGAACTGGGCTT+TGG - chr4_3:31321045-31321064 Msa0637900:intron 45.0%
CTGTCATTGAACTGGGCTTT+GGG - chr4_3:31321046-31321065 Msa0637900:intron 45.0%
CTTCTGGACATGATATGTGC+AGG - chr4_3:31321208-31321227 Msa0637900:CDS 45.0%
GTAAATAACCGCGTCGTGAT+GGG - chr4_3:31321230-31321249 Msa0637900:CDS 45.0%
!! TTCTTGCGGTGCTGTGTTGT+GGG + chr4_3:31316857-31316876 None:intergenic 50.0%
!! TTTCTTGCGGTGCTGTGTTG+TGG + chr4_3:31316858-31316877 None:intergenic 50.0%
! GTGTTGACGAAGAGATCGTG+AGG + chr4_3:31317183-31317202 None:intergenic 50.0%
GACTTTGGGTCCGTTTGGAT+TGG - chr4_3:31317320-31317339 Msa0637900:three_prime_UTR 50.0%
TACAGGACACACCTAATCCG+AGG - chr4_3:31317573-31317592 Msa0637900:three_prime_UTR 50.0%
! CGGGCTGCAGTTGATTTCAA+AGG + chr4_3:31317715-31317734 None:intergenic 50.0%
CCTGGCAAATCCCAAAGTAG+CGG - chr4_3:31317833-31317852 Msa0637900:three_prime_UTR 50.0%
! TCAGGCTGATCCGCTACTTT+GGG + chr4_3:31317846-31317865 None:intergenic 50.0%
!! AAAGTAGCGGATCAGCCTGA+GGG - chr4_3:31317846-31317865 Msa0637900:three_prime_UTR 50.0%
AGGTAGTCAATCCCGGATAG+CGG + chr4_3:31318100-31318119 None:intergenic 50.0%
CTATCCGGGATTGACTACCT+AGG - chr4_3:31318100-31318119 Msa0637900:intron 50.0%
GACACCTAGGTAGTCAATCC+CGG + chr4_3:31318107-31318126 None:intergenic 50.0%
CACGTATGCATCATGCCTTG+GGG + chr4_3:31318979-31318998 None:intergenic 50.0%
GCACGTATGCATCATGCCTT+GGG + chr4_3:31318980-31318999 None:intergenic 50.0%
TGAGGATGGCAACAGATAGG+TGG + chr4_3:31319049-31319068 None:intergenic 50.0%
! TTTTCAGCTGTCAGTGGTGG+CGG + chr4_3:31319211-31319230 None:intergenic 50.0%
TGAACAGTTGTCTGTCCTGG+AGG - chr4_3:31319234-31319253 Msa0637900:intron 50.0%
ATCTCTTGGTGAAGCTGGGA+AGG - chr4_3:31319288-31319307 Msa0637900:intron 50.0%
GAAGAAGATGGCACTCTGTG+AGG - chr4_3:31319575-31319594 Msa0637900:intron 50.0%
ATGGCACTCTGTGAGGTATG+TGG - chr4_3:31319582-31319601 Msa0637900:intron 50.0%
GGTATGTGGTTCGTTTCTCG+TGG - chr4_3:31319596-31319615 Msa0637900:intron 50.0%
AGAACTCAGTCTCATGTCGC+AGG - chr4_3:31319636-31319655 Msa0637900:intron 50.0%
! GGAAAGCAGCATGTTGGCTA+TGG - chr4_3:31319657-31319676 Msa0637900:intron 50.0%
! GCAGCATGTTGGCTATGGTA+TGG - chr4_3:31319662-31319681 Msa0637900:intron 50.0%
TCACTCCGTCTCTTTCTCTC+AGG + chr4_3:31319884-31319903 None:intergenic 50.0%
ATCGAGATAGGCAGCGTGAT+AGG - chr4_3:31319936-31319955 Msa0637900:intron 50.0%
CTCGGATCGTGAAAGATCTC+GGG - chr4_3:31319973-31319992 Msa0637900:intron 50.0%
GGTAGAGGTAATCGAGATCG+AGG - chr4_3:31320004-31320023 Msa0637900:intron 50.0%
GAGGTAATCGAGATCGAGGA+AGG - chr4_3:31320008-31320027 Msa0637900:intron 50.0%
GGTAATCGAGATCGAGGAAG+GGG - chr4_3:31320010-31320029 Msa0637900:intron 50.0%
GTAATCGAGATCGAGGAAGG+GGG - chr4_3:31320011-31320030 Msa0637900:intron 50.0%
GCAGAGACAGGTACCACAAT+CGG - chr4_3:31320068-31320087 Msa0637900:CDS 50.0%
AACGTGATCTGCTCCGATTG+TGG + chr4_3:31320084-31320103 None:intergenic 50.0%
ATGGAGAAAAGGGTCGAGGT+AGG - chr4_3:31320339-31320358 Msa0637900:intron 50.0%
GGTAAATAACCGCGTCGTGA+TGG - chr4_3:31321229-31321248 Msa0637900:CDS 50.0%
! TTGTTTCTCCCATCACGACG+CGG + chr4_3:31321241-31321260 None:intergenic 50.0%
AGCTCTCCTCGACGAACTCA+TGG - chr4_3:31316981-31317000 Msa0637900:three_prime_UTR 55.0%
GCTCTCCTCGACGAACTCAT+GGG - chr4_3:31316982-31317001 Msa0637900:three_prime_UTR 55.0%
CTGAACCCATGAGTTCGTCG+AGG + chr4_3:31316990-31317009 None:intergenic 55.0%
CTCGACGAACTCATGGGTTC+AGG - chr4_3:31316988-31317007 Msa0637900:three_prime_UTR 55.0%
GTCAACACGCGCAGTGATCT+CGG - chr4_3:31317195-31317214 Msa0637900:three_prime_UTR 55.0%
GGAAGGACTTTGGGTCCGTT+TGG - chr4_3:31317315-31317334 Msa0637900:three_prime_UTR 55.0%
GCACGGATACTCCTCGGATT+AGG + chr4_3:31317587-31317606 None:intergenic 55.0%
!! CCGCTACTTTGGGATTTGCC+AGG + chr4_3:31317836-31317855 None:intergenic 55.0%
CTCAGGCTGATCCGCTACTT+TGG + chr4_3:31317847-31317866 None:intergenic 55.0%
!! CAAAGTAGCGGATCAGCCTG+AGG - chr4_3:31317845-31317864 Msa0637900:three_prime_UTR 55.0%
CAGCCTGAGGGAAATTGCGA+CGG - chr4_3:31317858-31317877 Msa0637900:three_prime_UTR 55.0%
TCTCCGTCGCAATTTCCCTC+AGG + chr4_3:31317864-31317883 None:intergenic 55.0%
TGAGGGAAATTGCGACGGAG+AGG - chr4_3:31317863-31317882 Msa0637900:three_prime_UTR 55.0%
AGAGGATTTCGTCGCGATCC+TGG - chr4_3:31317881-31317900 Msa0637900:three_prime_UTR 55.0%
! AGATCCCGCTACCCCACTTT+TGG - chr4_3:31318058-31318077 Msa0637900:three_prime_UTR 55.0%
!! GATCCCGCTACCCCACTTTT+GGG - chr4_3:31318059-31318078 Msa0637900:intron 55.0%
!! ATCCCGCTACCCCACTTTTG+GGG - chr4_3:31318060-31318079 Msa0637900:intron 55.0%
AGCAGTCGACCCCAAAAGTG+GGG + chr4_3:31318072-31318091 None:intergenic 55.0%
GAGCAGTCGACCCCAAAAGT+GGG + chr4_3:31318073-31318092 None:intergenic 55.0%
TTTCGGGCAAGCTCCTGCAT+CGG + chr4_3:31318272-31318291 None:intergenic 55.0%
TAGAGCAACCATGTGCAGGC+AGG + chr4_3:31318801-31318820 None:intergenic 55.0%
GGCACGTATGCATCATGCCT+TGG + chr4_3:31318981-31319000 None:intergenic 55.0%
GTCGCAGGAAAGCAGCATGT+TGG - chr4_3:31319651-31319670 Msa0637900:intron 55.0%
GAGGAAGGGGGATGGTTTCT+AGG - chr4_3:31320023-31320042 Msa0637900:intron 55.0%
! GGGGGATGGTTTCTAGGTTG+AGG - chr4_3:31320029-31320048 Msa0637900:intron 55.0%
GTCATTGCCGCAAAAGGGGA+TGG - chr4_3:31320524-31320543 Msa0637900:intron 55.0%
GTCGGTGCATGTCCGACTAC+AGG - chr4_3:31317556-31317575 Msa0637900:three_prime_UTR 60.0%
GACCCCAAAAGTGGGGTAGC+GGG + chr4_3:31318065-31318084 None:intergenic 60.0%
CGACCCCAAAAGTGGGGTAG+CGG + chr4_3:31318066-31318085 None:intergenic 60.0%
GGAGCAGTCGACCCCAAAAG+TGG + chr4_3:31318074-31318093 None:intergenic 60.0%
ATGTGCAGGCAGGCAACTGC+AGG + chr4_3:31318791-31318810 None:intergenic 60.0%
TGCAGTTGCCTGCCTGCACA+TGG - chr4_3:31318790-31318809 Msa0637900:CDS 60.0%
TCGAGATCGAGGAAGGGGGA+TGG - chr4_3:31320015-31320034 Msa0637900:intron 60.0%
! GTCAATCCCGGATAGCGGCG+CGG + chr4_3:31318095-31318114 None:intergenic 65.0%
!! TCAGCTGTCAGTGGTGGCGG+TGG + chr4_3:31319208-31319227 None:intergenic 65.0%
GACTGCTCCGCGCCGCTATC+CGG - chr4_3:31318085-31318104 Msa0637900:intron 70.0%
ACTGCTCCGCGCCGCTATCC+GGG - chr4_3:31318086-31318105 Msa0637900:intron 70.0%
!! GCTGTCAGTGGTGGCGGTGG+TGG + chr4_3:31319205-31319224 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 31316762 31321610 31316762 ID=Msa0637900;Name=Msa0637900
chr4_3 mRNA 31316762 31321610 31316762 ID=Msa0637900-mRNA-1;Parent=Msa0637900;Name=Msa0637900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=205|1|1|1|0.85|0.75|8|1378|344
chr4_3 exon 31316762 31318077 31316762 ID=Msa0637900-mRNA-1:exon:7364;Parent=Msa0637900-mRNA-1
chr4_3 exon 31318175 31318575 31318175 ID=Msa0637900-mRNA-1:exon:7363;Parent=Msa0637900-mRNA-1
chr4_3 exon 31318662 31318868 31318662 ID=Msa0637900-mRNA-1:exon:7362;Parent=Msa0637900-mRNA-1
chr4_3 exon 31319033 31319233 31319033 ID=Msa0637900-mRNA-1:exon:7361;Parent=Msa0637900-mRNA-1
chr4_3 exon 31319332 31319407 31319332 ID=Msa0637900-mRNA-1:exon:7360;Parent=Msa0637900-mRNA-1
chr4_3 exon 31320055 31320094 31320055 ID=Msa0637900-mRNA-1:exon:7359;Parent=Msa0637900-mRNA-1
chr4_3 exon 31321156 31321284 31321156 ID=Msa0637900-mRNA-1:exon:7358;Parent=Msa0637900-mRNA-1
chr4_3 exon 31321363 31321610 31321363 ID=Msa0637900-mRNA-1:exon:7357;Parent=Msa0637900-mRNA-1
chr4_3 five_prime_UTR 31321406 31321610 31321406 ID=Msa0637900-mRNA-1:five_prime_utr;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31321363 31321405 31321363 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31321156 31321284 31321156 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31320055 31320094 31320055 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31319332 31319407 31319332 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31319033 31319233 31319033 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31318662 31318868 31318662 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 CDS 31318237 31318575 31318237 ID=Msa0637900-mRNA-1:cds;Parent=Msa0637900-mRNA-1
chr4_3 three_prime_UTR 31318175 31318236 31318175 ID=Msa0637900-mRNA-1:three_prime_utr;Parent=Msa0637900-mRNA-1
chr4_3 three_prime_UTR 31316762 31318077 31316762 ID=Msa0637900-mRNA-1:three_prime_utr;Parent=Msa0637900-mRNA-1
Gene Sequence

>Msa0637900

ATGGACGCTCAAAGAGCTCTCCTCGACGAACTCATGGGTTCAGCTCGAAACTTGACTGAGGAAGAAAGAAGGGGTTACAAAGAAGTGAGTTGGGACGATAAGGAAGTTTGTGGTTTCTATATGGTTCGCTTTTGCCCTCACGATCTCTTCGTCAACACGCGCAGTGATCTCGGAGCTTGCCCGAAAATACATGACCCGAAGTTGAAAGAAAATTTTGAGAATTCCCCAAGGCATGATGCATACGTGCCTAAATTTGAAGCCGATCTTGCTCAGTTTTGTGAGAAATTGGTGATGGACTTGGATAGAAGAGTAAAACGTGGACGAGAACGTCTTAATCAAGAGGTGGAGCTACCACCACCGCCACCACTGACAGCTGAAAAATCTGAACAGTTGTCTGTCCTGGAGGAGAAAATAAAGAACCTTCTGGAACAAGTTGAATCTCTTGGTGAAGCTGGGAAGGTTGATGAAGCTGAAGCTCTTATGAGAAAGGTGGAGACACTTAATACTGAGAAGGCAGTCTTAACACAACCTCAAAATGAAAAAGTGTTAATGCTTCAGGAGAAGAAGATGGCACTCTGTGAGGTATGTGGTTCGTTTCTCGTGGCAAATGATGCTGCAGAAAGAACTCAGTCTCATGTCGCAGGAAAGCAGCATGTTGGCTATGGTATGGTTCGTGACTTCATAAATGAATACAAGATTGCTAAGGAGAAGGCTAAGGAAGAAGAAAGATTGACTCGGGAAAAAGAGGTAGAAGAGCGAAGAAAACAAAAGGAGCAGGATCCTGAGAGAAAGAGACGGAGTGATTCAAGTGATAGGGAGAAATATCGTGATAAAGATCGAGATAGGCAGCGTGATAGGTACAGAGATAGAGACTCGGATCGTGAAAGATCTCGGGAATATGAAGGTAGAGGTAATCGAGATCGAGGAAGGGGGATGGTTTCTAGGTTGAGGAACGGAAAAAATGGAAGCAGAGACAGGTACCACAATCGGAGCAGATCACGTTCCCCTATTAAGCATAACTACAGAAGGTCTTGA

Protein sequence

>Msa0637900

MDAQRALLDELMGSARNLTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGACPKIHDPKLKENFENSPRHDAYVPKFEADLAQFCEKLVMDLDRRVKRGRERLNQEVELPPPPPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNTEKAVLTQPQNEKVLMLQEKKMALCEVCGSFLVANDAAERTQSHVAGKQHVGYGMVRDFINEYKIAKEKAKEEERLTREKEVEERRKQKEQDPERKRRSDSSDREKYRDKDRDRQRDRYRDRDSDRERSREYEGRGNRDRGRGMVSRLRNGKNGSRDRYHNRSRSRSPIKHNYRRS*