AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078390 MtrunA17_Chr1g0188981 95.855 193 7 1 1 193 1 192 1.11e-115 327
Msa0078390 MtrunA17_Chr6g0458331 40.351 114 65 2 28 141 36 146 8.10e-26 97.8
Msa0078390 MtrunA17_Chr4g0062341 34.731 167 90 7 26 187 29 181 3.68e-25 96.3
Msa0078390 MtrunA17_Chr4g0062311 34.731 167 90 7 26 187 29 181 3.68e-25 96.3
Msa0078390 MtrunA17_Chr1g0205701 34.177 158 84 3 9 152 8 159 3.18e-23 91.3
Msa0078390 MtrunA17_Chr4g0039721 32.515 163 91 5 26 184 29 176 6.86e-23 90.5
Msa0078390 MtrunA17_Chr1g0150131 38.776 98 59 1 32 129 29 125 1.56e-21 87.0
Msa0078390 MtrunA17_Chr5g0394321 31.351 185 113 5 11 192 7 180 3.29e-20 83.6
Msa0078390 MtrunA17_Chr2g0331181 32.237 152 93 3 6 152 7 153 7.47e-20 82.8
Msa0078390 MtrunA17_Chr3g0136871 33.540 161 93 6 32 190 31 179 3.29e-19 80.9
Msa0078390 MtrunA17_Chr2g0324721 36.538 104 63 1 26 129 24 124 5.61e-19 80.5
Msa0078390 MtrunA17_Chr4g0040291 35.200 125 76 3 28 150 24 145 6.41e-19 80.1
Msa0078390 MtrunA17_Chr4g0041811 34.513 113 73 1 17 129 20 131 7.30e-19 80.9
Msa0078390 MtrunA17_Chr2g0324711 35.246 122 73 2 8 129 7 122 1.12e-18 82.4
Msa0078390 MtrunA17_Chr2g0319611 36.111 108 68 1 23 129 20 127 2.24e-17 77.4
Msa0078390 MtrunA17_Chr8g0360371 31.624 117 75 2 13 129 10 121 3.72e-17 77.4
Msa0078390 MtrunA17_Chr8g0385041 38.655 119 68 3 27 145 23 136 5.41e-17 77.4
Msa0078390 MtrunA17_Chr2g0323021 32.836 134 75 5 32 156 29 156 3.04e-16 73.9
Msa0078390 MtrunA17_Chr8g0385031 33.051 118 76 2 13 129 7 122 1.35e-15 73.2
Msa0078390 MtrunA17_Chr6g0481491 29.032 124 81 3 7 129 5 122 7.51e-15 69.7
Msa0078390 MtrunA17_Chr2g0317231 32.759 116 69 4 26 138 22 131 1.34e-14 71.6
Msa0078390 MtrunA17_Chr4g0064041 31.034 145 83 4 13 152 8 140 2.67e-14 70.1
Msa0078390 MtrunA17_Chr4g0064041 32.673 101 67 1 29 129 191 290 1.06e-12 65.5
Msa0078390 MtrunA17_Chr8g0385021 33.051 118 76 2 13 129 7 122 5.79e-14 68.6
Msa0078390 MtrunA17_Chr8g0387804 33.333 99 64 1 31 129 31 127 9.16e-14 65.1
Msa0078390 MtrunA17_Chr8g0335531 26.455 189 128 5 9 193 5 186 1.41e-13 65.9
Msa0078390 MtrunA17_Chr1g0196801 29.448 163 102 6 29 189 23 174 1.56e-13 65.9
Msa0078390 MtrunA17_Chr4g0073901 29.126 103 71 2 28 129 28 129 6.09e-13 64.3
Msa0078390 MtrunA17_Chr8g0335571 30.645 124 79 3 6 129 2 118 6.11e-12 62.0
Msa0078390 MtrunA17_Chr6g0459441 33.028 109 66 4 23 130 20 122 7.62e-12 61.2
Msa0078390 MtrunA17_Chr1g0211101 27.344 128 87 2 8 134 12 134 4.44e-11 59.3
Msa0078390 MtrunA17_Chr1g0185541 37.879 66 41 0 64 129 5 70 4.77e-11 56.6
Msa0078390 MtrunA17_Chr3g0132411 31.683 101 63 2 29 129 65 159 5.08e-11 58.9
Msa0078390 MtrunA17_Chr8g0379081 34.426 122 70 4 77 193 2 118 5.80e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078390 AT1G64640.1 57.792 154 60 3 9 162 13 161 1.36e-54 172
Msa0078390 AT3G20570.1 37.931 116 70 1 14 129 15 128 6.80e-26 99.4
Msa0078390 AT1G79800.1 38.843 121 71 2 28 147 33 151 2.79e-22 89.4
Msa0078390 AT1G48940.1 38.318 107 63 2 24 129 21 125 4.87e-22 88.6
Msa0078390 AT3G18590.1 37.864 103 61 2 28 129 26 126 9.16e-21 85.5
Msa0078390 AT4G31840.1 38.400 125 72 3 32 153 31 153 1.20e-20 84.7
Msa0078390 AT2G25060.1 39.000 100 57 2 30 129 36 131 1.26e-20 85.1
Msa0078390 AT5G57920.1 37.755 98 60 1 32 129 27 123 1.87e-20 84.3
Msa0078390 AT5G57920.2 37.755 98 60 1 32 129 26 122 3.07e-20 84.0
Msa0078390 AT5G57920.3 37.755 98 60 1 32 129 59 155 6.20e-20 84.0
Msa0078390 AT4G27520.1 33.108 148 94 3 12 158 14 157 1.36e-19 85.1
Msa0078390 AT5G14345.1 32.061 131 83 2 14 144 5 129 2.87e-19 80.5
Msa0078390 AT4G28365.1 32.867 143 87 5 27 166 27 163 3.17e-19 81.6
Msa0078390 AT5G53870.2 34.545 165 96 6 8 169 12 167 4.57e-19 84.0
Msa0078390 AT5G53870.1 34.545 165 96 6 8 169 12 167 5.19e-19 84.0
Msa0078390 AT4G32490.1 33.333 108 69 1 27 134 29 133 1.37e-18 80.5
Msa0078390 AT2G32300.1 28.659 164 109 2 1 164 1 156 2.09e-18 80.9
Msa0078390 AT2G32300.2 28.659 164 109 2 1 164 31 186 2.30e-18 81.3
Msa0078390 AT4G30590.1 35.714 98 62 1 32 129 32 128 1.55e-17 77.0
Msa0078390 AT5G25090.1 33.673 98 64 1 32 129 30 126 1.56e-17 77.0
Msa0078390 AT2G23990.1 37.374 99 60 2 32 129 31 128 2.74e-17 76.6
Msa0078390 AT5G26330.1 38.614 101 59 2 29 129 24 121 5.77e-17 75.5
Msa0078390 AT2G31050.1 32.090 134 85 3 11 142 11 140 6.41e-13 64.7
Msa0078390 AT2G23990.2 30.508 118 61 3 32 129 31 147 1.00e-12 64.7
Msa0078390 AT5G07475.1 30.400 125 72 4 31 155 32 141 2.21e-12 63.2
Msa0078390 AT1G45063.2 33.333 108 68 2 29 135 149 253 2.28e-12 64.3
Msa0078390 AT1G45063.1 33.333 108 68 2 29 135 149 253 2.86e-12 64.7
Msa0078390 AT2G26720.1 27.778 144 98 2 1 142 1 140 4.35e-12 62.8
Msa0078390 AT3G60270.1 31.132 106 67 2 24 129 21 120 3.41e-11 60.1
Msa0078390 AT3G17675.1 30.303 99 64 1 31 129 34 127 4.22e-11 58.5

Find 52 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTCATGTGTTCATTAT+TGG 0.102418 1_2:+55869791 Msa0078390:CDS
AAGGGTGAAGTTGTGAAATT+TGG 0.223732 1_2:-55869292 None:intergenic
ACACATGAAAGTTTGAAATT+AGG 0.261113 1_2:-55869781 None:intergenic
CATATATCTGTTGGAGGAAT+TGG 0.263666 1_2:+55869644 Msa0078390:CDS
AAAACACTTTGGTTTGGATT+TGG 0.276909 1_2:-55869191 None:intergenic
CCATTGTTCATAAACAATAT+TGG 0.281321 1_2:-55869536 None:intergenic
CCCTCTTCACAAACAGTGTT+TGG 0.328717 1_2:+55869719 Msa0078390:CDS
TATTTCACAAGTGGAGAAAA+TGG 0.337499 1_2:+55869596 Msa0078390:CDS
ATCTGGCGATTGGCTGGAAT+TGG 0.339184 1_2:-55869048 None:intergenic
CAGTCATAACAACTGGTTCT+TGG 0.354742 1_2:+55869143 Msa0078390:CDS
GTTGTTATGACTGGCCATTT+TGG 0.356548 1_2:-55869133 None:intergenic
TTAGATCTCCAACTTTGAAT+TGG 0.367316 1_2:-55869218 None:intergenic
GAAAATAATAGAAACCAAAA+TGG 0.373724 1_2:+55869119 Msa0078390:exon
GGTAACAAAACACTTTGGTT+TGG 0.374201 1_2:-55869197 None:intergenic
GTTGTGAAATTTGGACCATT+TGG 0.387553 1_2:-55869283 None:intergenic
AGTTGGAGATCTAAATGCTT+GGG 0.404972 1_2:+55869227 Msa0078390:CDS
TCAATCTGTAATTCTTTATG+TGG 0.412274 1_2:+55869936 Msa0078390:three_prime_UTR
CCAAACACTGTTTGTGAAGA+GGG 0.433432 1_2:-55869719 None:intergenic
TTTGATGAAGAAGGAGCTAC+TGG 0.443782 1_2:-55869749 None:intergenic
TTGCAAATCTGGCGATTGGC+TGG 0.450232 1_2:-55869054 None:intergenic
CAAAAGATTCATATATCTGT+TGG 0.454335 1_2:+55869635 Msa0078390:CDS
TGAGGTGAATTTGATGAAGA+AGG 0.457613 1_2:-55869758 None:intergenic
AAATTTCACAACTTCACCCT+TGG 0.467456 1_2:+55869294 Msa0078390:CDS
TATAGTACTTGAAATTGAAA+GGG 0.476703 1_2:-55869017 None:intergenic
GACCATTTGGCATAGACTTG+TGG 0.481282 1_2:-55869270 None:intergenic
AAATGGCCAGTCATAACAAC+TGG 0.486950 1_2:+55869136 Msa0078390:exon
ATATAGTACTTGAAATTGAA+AGG 0.492057 1_2:-55869018 None:intergenic
AACAAAGTATTGCATAATCA+AGG 0.497229 1_2:-55869984 None:intergenic
TGGCTTGCAAATCTGGCGAT+TGG 0.499681 1_2:-55869058 None:intergenic
ATCAATGAATCTTGACTTGG+TGG 0.501009 1_2:-55869470 None:intergenic
TGTGAAGAGGGTGCAGATGC+AGG 0.517498 1_2:-55869707 None:intergenic
TGGCTTTAATGTAAAAGCAA+AGG 0.519119 1_2:+55869837 Msa0078390:exon
GAATTGGTAACAAAACACTT+TGG 0.523437 1_2:-55869202 None:intergenic
ATCCACAAGTCTATGCCAAA+TGG 0.524658 1_2:+55869268 Msa0078390:CDS
AATGTTGATGCTGAAGCTAA+TGG 0.532427 1_2:+55869668 Msa0078390:CDS
CCAATATTGTTTATGAACAA+TGG 0.534060 1_2:+55869536 Msa0078390:CDS
GATGCAGGCAATGAAGAACT+TGG 0.536171 1_2:-55869692 None:intergenic
AAGTTGGAGATCTAAATGCT+TGG 0.539050 1_2:+55869226 Msa0078390:CDS
GGTGATTTCTATTTCACAAG+TGG 0.546187 1_2:+55869587 Msa0078390:CDS
TCCAAACACTGTTTGTGAAG+AGG 0.548927 1_2:-55869720 None:intergenic
AAGATTCATATATCTGTTGG+AGG 0.558686 1_2:+55869638 Msa0078390:CDS
GACTTGTGGATTTGCTGAGG+TGG 0.563923 1_2:-55869256 None:intergenic
CAAGAACCAGTTGTTATGAC+TGG 0.565931 1_2:-55869142 None:intergenic
ACTTACAAAGTGAGTCTCCA+AGG 0.579525 1_2:-55869311 None:intergenic
TTGTTTAACATAACATCACA+TGG 0.586899 1_2:+55869566 Msa0078390:CDS
TGAATCAATGAATCTTGACT+TGG 0.587776 1_2:-55869473 None:intergenic
ACTTGTGGATTTGCTGAGGT+GGG 0.610232 1_2:-55869255 None:intergenic
TGAAAGTTTGAAATTAGGTG+AGG 0.611699 1_2:-55869776 None:intergenic
GTTGGAGATCTAAATGCTTG+GGG 0.615224 1_2:+55869228 Msa0078390:CDS
ATAGACTTGTGGATTTGCTG+AGG 0.630575 1_2:-55869259 None:intergenic
ATAGTACTTGAAATTGAAAG+GGG 0.641750 1_2:-55869016 None:intergenic
CTTACAAAGTGAGTCTCCAA+GGG 0.672775 1_2:-55869310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTATTATTTTCTTAGATTT+AGG - chr1_2:55869111-55869130 None:intergenic 15.0%
!! ATTGGAATATATTGTATATA+TGG - chr1_2:55869337-55869356 None:intergenic 15.0%
!! TAAAATGAAATTAAGGAAAT+TGG - chr1_2:55869355-55869374 None:intergenic 15.0%
!! ACTACAATAAAATGAAATTA+AGG - chr1_2:55869362-55869381 None:intergenic 15.0%
!!! AATTTCATTTCAAATTTTTG+GGG - chr1_2:55870062-55870081 None:intergenic 15.0%
!!! GAATTTCATTTCAAATTTTT+GGG - chr1_2:55870063-55870082 None:intergenic 15.0%
!!! AGAATTTCATTTCAAATTTT+TGG - chr1_2:55870064-55870083 None:intergenic 15.0%
!!! TCTATTATTTTCTTAGATTT+AGG - chr1_2:55869111-55869130 None:intergenic 15.0%
!! ATTGGAATATATTGTATATA+TGG - chr1_2:55869337-55869356 None:intergenic 15.0%
!! TAAAATGAAATTAAGGAAAT+TGG - chr1_2:55869355-55869374 None:intergenic 15.0%
!! ACTACAATAAAATGAAATTA+AGG - chr1_2:55869362-55869381 None:intergenic 15.0%
!!! AATTTCATTTCAAATTTTTG+GGG - chr1_2:55870062-55870081 None:intergenic 15.0%
!!! GAATTTCATTTCAAATTTTT+GGG - chr1_2:55870063-55870082 None:intergenic 15.0%
!!! AGAATTTCATTTCAAATTTT+TGG - chr1_2:55870064-55870083 None:intergenic 15.0%
!! TATAGTACTTGAAATTGAAA+GGG - chr1_2:55869020-55869039 None:intergenic 20.0%
!! ATATAGTACTTGAAATTGAA+AGG - chr1_2:55869021-55869040 None:intergenic 20.0%
!! GAAAATAATAGAAACCAAAA+TGG + chr1_2:55869119-55869138 Msa0078390:exon 20.0%
!!! ATTCATATGTAATGTTTCTA+AGG + chr1_2:55869382-55869401 Msa0078390:intron 20.0%
!!! TTCATATGTAATGTTTCTAA+GGG + chr1_2:55869383-55869402 Msa0078390:intron 20.0%
!!! TATGAATCTTTTGATTCTTT+TGG - chr1_2:55869628-55869647 None:intergenic 20.0%
!! TATAGTACTTGAAATTGAAA+GGG - chr1_2:55869020-55869039 None:intergenic 20.0%
!! ATATAGTACTTGAAATTGAA+AGG - chr1_2:55869021-55869040 None:intergenic 20.0%
!! GAAAATAATAGAAACCAAAA+TGG + chr1_2:55869119-55869138 Msa0078390:exon 20.0%
!!! ATTCATATGTAATGTTTCTA+AGG + chr1_2:55869382-55869401 Msa0078390:intron 20.0%
!!! TTCATATGTAATGTTTCTAA+GGG + chr1_2:55869383-55869402 Msa0078390:intron 20.0%
!!! TATGAATCTTTTGATTCTTT+TGG - chr1_2:55869628-55869647 None:intergenic 20.0%
! ATAGTACTTGAAATTGAAAG+GGG - chr1_2:55869019-55869038 None:intergenic 25.0%
!! TTTTGTTACCAATTCAAAGT+TGG + chr1_2:55869210-55869229 Msa0078390:CDS 25.0%
! CCATTGTTCATAAACAATAT+TGG - chr1_2:55869539-55869558 None:intergenic 25.0%
! CCAATATTGTTTATGAACAA+TGG + chr1_2:55869536-55869555 Msa0078390:CDS 25.0%
! TTGTTTAACATAACATCACA+TGG + chr1_2:55869566-55869585 Msa0078390:CDS 25.0%
! CAAAAGATTCATATATCTGT+TGG + chr1_2:55869635-55869654 Msa0078390:CDS 25.0%
!! ACACATGAAAGTTTGAAATT+AGG - chr1_2:55869784-55869803 None:intergenic 25.0%
! AACTTTCATGTGTTCATTAT+TGG + chr1_2:55869791-55869810 Msa0078390:CDS 25.0%
! TCAATCTGTAATTCTTTATG+TGG + chr1_2:55869936-55869955 Msa0078390:three_prime_UTR 25.0%
!!! AACAAAGTATTGCATAATCA+AGG - chr1_2:55869987-55870006 None:intergenic 25.0%
! ATAGTACTTGAAATTGAAAG+GGG - chr1_2:55869019-55869038 None:intergenic 25.0%
!! TTTTGTTACCAATTCAAAGT+TGG + chr1_2:55869210-55869229 Msa0078390:CDS 25.0%
! CCATTGTTCATAAACAATAT+TGG - chr1_2:55869539-55869558 None:intergenic 25.0%
! CCAATATTGTTTATGAACAA+TGG + chr1_2:55869536-55869555 Msa0078390:CDS 25.0%
! TTGTTTAACATAACATCACA+TGG + chr1_2:55869566-55869585 Msa0078390:CDS 25.0%
! CAAAAGATTCATATATCTGT+TGG + chr1_2:55869635-55869654 Msa0078390:CDS 25.0%
!! ACACATGAAAGTTTGAAATT+AGG - chr1_2:55869784-55869803 None:intergenic 25.0%
! AACTTTCATGTGTTCATTAT+TGG + chr1_2:55869791-55869810 Msa0078390:CDS 25.0%
! TCAATCTGTAATTCTTTATG+TGG + chr1_2:55869936-55869955 Msa0078390:three_prime_UTR 25.0%
!!! AACAAAGTATTGCATAATCA+AGG - chr1_2:55869987-55870006 None:intergenic 25.0%
!!! TTTTTATTGGCTTGCAAATC+TGG - chr1_2:55869068-55869087 None:intergenic 30.0%
!! AAAACACTTTGGTTTGGATT+TGG - chr1_2:55869194-55869213 None:intergenic 30.0%
! GAATTGGTAACAAAACACTT+TGG - chr1_2:55869205-55869224 None:intergenic 30.0%
TTAGATCTCCAACTTTGAAT+TGG - chr1_2:55869221-55869240 None:intergenic 30.0%
TGAATCAATGAATCTTGACT+TGG - chr1_2:55869476-55869495 None:intergenic 30.0%
TATTTCACAAGTGGAGAAAA+TGG + chr1_2:55869596-55869615 Msa0078390:CDS 30.0%
AAGATTCATATATCTGTTGG+AGG + chr1_2:55869638-55869657 Msa0078390:CDS 30.0%
! TGAAAGTTTGAAATTAGGTG+AGG - chr1_2:55869779-55869798 None:intergenic 30.0%
! TCTCATATATGCACTGTTTT+TGG + chr1_2:55869817-55869836 Msa0078390:CDS 30.0%
!! TGGCTTTAATGTAAAAGCAA+AGG + chr1_2:55869837-55869856 Msa0078390:exon 30.0%
!!! TTTTTATTGGCTTGCAAATC+TGG - chr1_2:55869068-55869087 None:intergenic 30.0%
!! AAAACACTTTGGTTTGGATT+TGG - chr1_2:55869194-55869213 None:intergenic 30.0%
! GAATTGGTAACAAAACACTT+TGG - chr1_2:55869205-55869224 None:intergenic 30.0%
TTAGATCTCCAACTTTGAAT+TGG - chr1_2:55869221-55869240 None:intergenic 30.0%
TGAATCAATGAATCTTGACT+TGG - chr1_2:55869476-55869495 None:intergenic 30.0%
TATTTCACAAGTGGAGAAAA+TGG + chr1_2:55869596-55869615 Msa0078390:CDS 30.0%
AAGATTCATATATCTGTTGG+AGG + chr1_2:55869638-55869657 Msa0078390:CDS 30.0%
! TGAAAGTTTGAAATTAGGTG+AGG - chr1_2:55869779-55869798 None:intergenic 30.0%
! TCTCATATATGCACTGTTTT+TGG + chr1_2:55869817-55869836 Msa0078390:CDS 30.0%
!! TGGCTTTAATGTAAAAGCAA+AGG + chr1_2:55869837-55869856 Msa0078390:exon 30.0%
CAATAAAAAGTCCTCGTTGA+GGG + chr1_2:55869079-55869098 Msa0078390:five_prime_UTR 35.0%
AATAAAAAGTCCTCGTTGAG+GGG + chr1_2:55869080-55869099 Msa0078390:five_prime_UTR 35.0%
GGTAACAAAACACTTTGGTT+TGG - chr1_2:55869200-55869219 None:intergenic 35.0%
AAGTTGGAGATCTAAATGCT+TGG + chr1_2:55869226-55869245 Msa0078390:CDS 35.0%
AGTTGGAGATCTAAATGCTT+GGG + chr1_2:55869227-55869246 Msa0078390:CDS 35.0%
GTTGTGAAATTTGGACCATT+TGG - chr1_2:55869286-55869305 None:intergenic 35.0%
AAGGGTGAAGTTGTGAAATT+TGG - chr1_2:55869295-55869314 None:intergenic 35.0%
AAATTTCACAACTTCACCCT+TGG + chr1_2:55869294-55869313 Msa0078390:CDS 35.0%
!! ATCAATGAATCTTGACTTGG+TGG - chr1_2:55869473-55869492 None:intergenic 35.0%
GGTGATTTCTATTTCACAAG+TGG + chr1_2:55869587-55869606 Msa0078390:CDS 35.0%
CATATATCTGTTGGAGGAAT+TGG + chr1_2:55869644-55869663 Msa0078390:CDS 35.0%
AATGTTGATGCTGAAGCTAA+TGG + chr1_2:55869668-55869687 Msa0078390:CDS 35.0%
TGAGGTGAATTTGATGAAGA+AGG - chr1_2:55869761-55869780 None:intergenic 35.0%
CAATAAAAAGTCCTCGTTGA+GGG + chr1_2:55869079-55869098 Msa0078390:five_prime_UTR 35.0%
AATAAAAAGTCCTCGTTGAG+GGG + chr1_2:55869080-55869099 Msa0078390:five_prime_UTR 35.0%
GGTAACAAAACACTTTGGTT+TGG - chr1_2:55869200-55869219 None:intergenic 35.0%
AAGTTGGAGATCTAAATGCT+TGG + chr1_2:55869226-55869245 Msa0078390:CDS 35.0%
AGTTGGAGATCTAAATGCTT+GGG + chr1_2:55869227-55869246 Msa0078390:CDS 35.0%
GTTGTGAAATTTGGACCATT+TGG - chr1_2:55869286-55869305 None:intergenic 35.0%
AAGGGTGAAGTTGTGAAATT+TGG - chr1_2:55869295-55869314 None:intergenic 35.0%
AAATTTCACAACTTCACCCT+TGG + chr1_2:55869294-55869313 Msa0078390:CDS 35.0%
!! ATCAATGAATCTTGACTTGG+TGG - chr1_2:55869473-55869492 None:intergenic 35.0%
GGTGATTTCTATTTCACAAG+TGG + chr1_2:55869587-55869606 Msa0078390:CDS 35.0%
CATATATCTGTTGGAGGAAT+TGG + chr1_2:55869644-55869663 Msa0078390:CDS 35.0%
AATGTTGATGCTGAAGCTAA+TGG + chr1_2:55869668-55869687 Msa0078390:CDS 35.0%
TGAGGTGAATTTGATGAAGA+AGG - chr1_2:55869761-55869780 None:intergenic 35.0%
! CCTCAACGAGGACTTTTTAT+TGG - chr1_2:55869081-55869100 None:intergenic 40.0%
CCAATAAAAAGTCCTCGTTG+AGG + chr1_2:55869078-55869097 Msa0078390:five_prime_UTR 40.0%
ATAAAAAGTCCTCGTTGAGG+GGG + chr1_2:55869081-55869100 Msa0078390:five_prime_UTR 40.0%
!! GTTGTTATGACTGGCCATTT+TGG - chr1_2:55869136-55869155 None:intergenic 40.0%
AAATGGCCAGTCATAACAAC+TGG + chr1_2:55869136-55869155 Msa0078390:exon 40.0%
CAAGAACCAGTTGTTATGAC+TGG - chr1_2:55869145-55869164 None:intergenic 40.0%
! CAGTCATAACAACTGGTTCT+TGG + chr1_2:55869143-55869162 Msa0078390:CDS 40.0%
GTTGGAGATCTAAATGCTTG+GGG + chr1_2:55869228-55869247 Msa0078390:CDS 40.0%
!! ATAGACTTGTGGATTTGCTG+AGG - chr1_2:55869262-55869281 None:intergenic 40.0%
ATCCACAAGTCTATGCCAAA+TGG + chr1_2:55869268-55869287 Msa0078390:CDS 40.0%
CTTACAAAGTGAGTCTCCAA+GGG - chr1_2:55869313-55869332 None:intergenic 40.0%
ACTTACAAAGTGAGTCTCCA+AGG - chr1_2:55869314-55869333 None:intergenic 40.0%
CCAAACACTGTTTGTGAAGA+GGG - chr1_2:55869722-55869741 None:intergenic 40.0%
TCCAAACACTGTTTGTGAAG+AGG - chr1_2:55869723-55869742 None:intergenic 40.0%
TTTGATGAAGAAGGAGCTAC+TGG - chr1_2:55869752-55869771 None:intergenic 40.0%
! CCTCAACGAGGACTTTTTAT+TGG - chr1_2:55869081-55869100 None:intergenic 40.0%
CCAATAAAAAGTCCTCGTTG+AGG + chr1_2:55869078-55869097 Msa0078390:five_prime_UTR 40.0%
ATAAAAAGTCCTCGTTGAGG+GGG + chr1_2:55869081-55869100 Msa0078390:five_prime_UTR 40.0%
!! GTTGTTATGACTGGCCATTT+TGG - chr1_2:55869136-55869155 None:intergenic 40.0%
AAATGGCCAGTCATAACAAC+TGG + chr1_2:55869136-55869155 Msa0078390:exon 40.0%
CAAGAACCAGTTGTTATGAC+TGG - chr1_2:55869145-55869164 None:intergenic 40.0%
! CAGTCATAACAACTGGTTCT+TGG + chr1_2:55869143-55869162 Msa0078390:CDS 40.0%
GTTGGAGATCTAAATGCTTG+GGG + chr1_2:55869228-55869247 Msa0078390:CDS 40.0%
!! ATAGACTTGTGGATTTGCTG+AGG - chr1_2:55869262-55869281 None:intergenic 40.0%
ATCCACAAGTCTATGCCAAA+TGG + chr1_2:55869268-55869287 Msa0078390:CDS 40.0%
CTTACAAAGTGAGTCTCCAA+GGG - chr1_2:55869313-55869332 None:intergenic 40.0%
ACTTACAAAGTGAGTCTCCA+AGG - chr1_2:55869314-55869333 None:intergenic 40.0%
CCAAACACTGTTTGTGAAGA+GGG - chr1_2:55869722-55869741 None:intergenic 40.0%
TCCAAACACTGTTTGTGAAG+AGG - chr1_2:55869723-55869742 None:intergenic 40.0%
TTTGATGAAGAAGGAGCTAC+TGG - chr1_2:55869752-55869771 None:intergenic 40.0%
TAAAAAGTCCTCGTTGAGGG+GGG + chr1_2:55869082-55869101 Msa0078390:five_prime_UTR 45.0%
!! ACTTGTGGATTTGCTGAGGT+GGG - chr1_2:55869258-55869277 None:intergenic 45.0%
GACCATTTGGCATAGACTTG+TGG - chr1_2:55869273-55869292 None:intergenic 45.0%
GATGCAGGCAATGAAGAACT+TGG - chr1_2:55869695-55869714 None:intergenic 45.0%
CCCTCTTCACAAACAGTGTT+TGG + chr1_2:55869719-55869738 Msa0078390:CDS 45.0%
TAAAAAGTCCTCGTTGAGGG+GGG + chr1_2:55869082-55869101 Msa0078390:five_prime_UTR 45.0%
!! ACTTGTGGATTTGCTGAGGT+GGG - chr1_2:55869258-55869277 None:intergenic 45.0%
GACCATTTGGCATAGACTTG+TGG - chr1_2:55869273-55869292 None:intergenic 45.0%
GATGCAGGCAATGAAGAACT+TGG - chr1_2:55869695-55869714 None:intergenic 45.0%
CCCTCTTCACAAACAGTGTT+TGG + chr1_2:55869719-55869738 Msa0078390:CDS 45.0%
! ATCTGGCGATTGGCTGGAAT+TGG - chr1_2:55869051-55869070 None:intergenic 50.0%
TTGCAAATCTGGCGATTGGC+TGG - chr1_2:55869057-55869076 None:intergenic 50.0%
! TGGCTTGCAAATCTGGCGAT+TGG - chr1_2:55869061-55869080 None:intergenic 50.0%
AAAAAGTCCTCGTTGAGGGG+GGG + chr1_2:55869083-55869102 Msa0078390:five_prime_UTR 50.0%
!! GACTTGTGGATTTGCTGAGG+TGG - chr1_2:55869259-55869278 None:intergenic 50.0%
! ATCTGGCGATTGGCTGGAAT+TGG - chr1_2:55869051-55869070 None:intergenic 50.0%
TTGCAAATCTGGCGATTGGC+TGG - chr1_2:55869057-55869076 None:intergenic 50.0%
! TGGCTTGCAAATCTGGCGAT+TGG - chr1_2:55869061-55869080 None:intergenic 50.0%
AAAAAGTCCTCGTTGAGGGG+GGG + chr1_2:55869083-55869102 Msa0078390:five_prime_UTR 50.0%
!! GACTTGTGGATTTGCTGAGG+TGG - chr1_2:55869259-55869278 None:intergenic 50.0%
AAAAGTCCTCGTTGAGGGGG+GGG + chr1_2:55869084-55869103 Msa0078390:five_prime_UTR 55.0%
! TGTGAAGAGGGTGCAGATGC+AGG - chr1_2:55869710-55869729 None:intergenic 55.0%
AAAAGTCCTCGTTGAGGGGG+GGG + chr1_2:55869084-55869103 Msa0078390:five_prime_UTR 55.0%
! TGTGAAGAGGGTGCAGATGC+AGG - chr1_2:55869710-55869729 None:intergenic 55.0%
TTAGGACCCCCCCCTCAACG+AGG - chr1_2:55869093-55869112 None:intergenic 65.0%
TTAGGACCCCCCCCTCAACG+AGG - chr1_2:55869093-55869112 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55868976 55870085 55868976 ID=Msa0078390;Name=Msa0078390
chr1_2 mRNA 55868976 55870085 55868976 ID=Msa0078390-mRNA-1;Parent=Msa0078390;Name=Msa0078390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=162|1|1|1|1|1|2|235|193
chr1_2 exon 55868976 55869327 55868976 ID=Msa0078390-mRNA-1:exon:17397;Parent=Msa0078390-mRNA-1
chr1_2 exon 55869459 55870085 55869459 ID=Msa0078390-mRNA-1:exon:17398;Parent=Msa0078390-mRNA-1
chr1_2 five_prime_UTR 55868976 55869137 55868976 ID=Msa0078390-mRNA-1:five_prime_utr;Parent=Msa0078390-mRNA-1
chr1_2 CDS 55869138 55869327 55869138 ID=Msa0078390-mRNA-1:cds;Parent=Msa0078390-mRNA-1
chr1_2 CDS 55869459 55869850 55869459 ID=Msa0078390-mRNA-1:cds;Parent=Msa0078390-mRNA-1
chr1_2 three_prime_UTR 55869851 55870085 55869851 ID=Msa0078390-mRNA-1:three_prime_utr;Parent=Msa0078390-mRNA-1
Gene Sequence

>Msa0078390

ATGGCCAGTCATAACAACTGGTTCTTGGTTTCTTCTCTCTTGCTTACATTGCTCCAAATCCAAACCAAAGTGTTTTGTTACCAATTCAAAGTTGGAGATCTAAATGCTTGGGGTATACCCACCTCAGCAAATCCACAAGTCTATGCCAAATGGTCCAAATTTCACAACTTCACCCTTGGAGACTCACTTTTGTTTCTATATCCACCAAGTCAAGATTCATTGATTCAAGTAACACAAGAATCTTACAAGAGCTGCAACACTAAAGATCCAATATTGTTTATGAACAATGGTAACTCTTTGTTTAACATAACATCACATGGTGATTTCTATTTCACAAGTGGAGAAAATGGTCATTGCCAAAAGAATCAAAAGATTCATATATCTGTTGGAGGAATTGGAAATGTTGATGCTGAAGCTAATGGTCCAAGTTCTTCATTGCCTGCATCTGCACCCTCTTCACAAACAGTGTTTGGAAACATTCCAGTAGCTCCTTCTTCATCAAATTCACCTCACCTAATTTCAAACTTTCATGTGTTCATTATTGGATCTCTCATATATGCACTGTTTTTGGCTTTAATGTAA
Protein sequence

>Msa0078390

MASHNNWFLVSSLLLTLLQIQTKVFCYQFKVGDLNAWGIPTSANPQVYAKWSKFHNFTLGDSLLFLYPPSQDSLIQVTQESYKSCNTKDPILFMNNGNSLFNITSHGDFYFTSGENGHCQKNQKIHISVGGIGNVDAEANGPSSSLPASAPSSQTVFGNIPVAPSSSNSPHLISNFHVFIIGSLIYALFLALM*