Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126130 | XP_013468863.1 | 95.337 | 193 | 8 | 1 | 1 | 193 | 1 | 192 | 1.91e-111 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126130 | sp|Q9SK27|ENL1_ARATH | 39.000 | 100 | 57 | 2 | 30 | 129 | 36 | 131 | 1.30e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126130 | I3SLL8 | 95.337 | 193 | 8 | 1 | 1 | 193 | 1 | 192 | 9.12e-112 | 326 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031080 | Msa0126130 | 0.932602 | 6.655365e-95 | -8.615850e-47 |
| Msa0031120 | Msa0126130 | 0.876781 | 1.062743e-68 | -8.615850e-47 |
| Msa0078390 | Msa0126130 | 0.955697 | 1.668434e-113 | -8.615850e-47 |
| Msa0126130 | Msa0147680 | 0.803193 | 3.917071e-49 | -8.615850e-47 |
| Msa0126130 | Msa0171060 | 0.915327 | 6.711439e-85 | -8.615850e-47 |
| Msa0126130 | Msa0236940 | 0.806663 | 7.372294e-50 | -8.615850e-47 |
| Msa0126130 | Msa0255720 | 0.832214 | 1.073865e-55 | -8.615850e-47 |
| Msa0126130 | Msa0349550 | 0.801250 | 9.836544e-49 | -8.615850e-47 |
| Msa0126130 | Msa0566460 | 0.807357 | 5.258716e-50 | -8.615850e-47 |
| Msa0126130 | Msa0689830 | 0.855099 | 7.917708e-62 | -8.615850e-47 |
| Msa0126130 | Msa0731780 | 0.812135 | 4.936979e-51 | -8.615850e-47 |
| Msa0126130 | Msa0771910 | 0.835366 | 1.749755e-56 | -8.615850e-47 |
| Msa0126130 | Msa0810080 | 0.842490 | 2.505273e-58 | -8.615850e-47 |
| Msa0126130 | Msa0846900 | 0.849443 | 3.224213e-60 | -8.615850e-47 |
| Msa0126130 | Msa0850600 | 0.854985 | 8.542538e-62 | -8.615850e-47 |
| Msa0126130 | Msa0901820 | 0.821591 | 3.722970e-53 | -8.615850e-47 |
| Msa0126130 | Msa0947430 | 0.807325 | 5.341765e-50 | -8.615850e-47 |
| Msa0126130 | Msa0966920 | 0.810824 | 9.510580e-51 | -8.615850e-47 |
| Msa0126130 | Msa1021560 | 0.832442 | 9.433596e-56 | -8.615850e-47 |
| Msa0126130 | Msa1024570 | 0.812218 | 4.736296e-51 | -8.615850e-47 |
| Msa0126130 | Msa1041170 | 0.839847 | 1.240152e-57 | -8.615850e-47 |
| Msa0126130 | Msa1105540 | 0.800892 | 1.164181e-48 | -8.615850e-47 |
| Msa0126130 | Msa1124210 | 0.874617 | 5.869264e-68 | -8.615850e-47 |
| Msa0126130 | Msa1148930 | 0.806631 | 7.488824e-50 | -8.615850e-47 |
| Msa0126130 | Msa1185870 | 0.805044 | 1.614104e-49 | -8.615850e-47 |
| Msa0126130 | Msa1361990 | 0.846451 | 2.153887e-59 | -8.615850e-47 |
| Msa0126130 | Msa1458790 | 0.837618 | 4.673745e-57 | -8.615850e-47 |
| Msa0126130 | Msa1462780 | 0.812198 | 4.782987e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126130 | MtrunA17_Chr1g0188981 | 95.337 | 193 | 8 | 1 | 1 | 193 | 1 | 192 | 1.76e-115 | 326 |
| Msa0126130 | MtrunA17_Chr6g0458331 | 40.351 | 114 | 65 | 2 | 28 | 141 | 36 | 146 | 8.55e-26 | 97.8 |
| Msa0126130 | MtrunA17_Chr4g0062341 | 34.731 | 167 | 90 | 7 | 26 | 187 | 29 | 181 | 3.38e-25 | 96.3 |
| Msa0126130 | MtrunA17_Chr4g0062311 | 34.731 | 167 | 90 | 7 | 26 | 187 | 29 | 181 | 3.38e-25 | 96.3 |
| Msa0126130 | MtrunA17_Chr1g0205701 | 34.177 | 158 | 84 | 3 | 9 | 152 | 8 | 159 | 4.46e-23 | 90.9 |
| Msa0126130 | MtrunA17_Chr4g0039721 | 32.515 | 163 | 91 | 5 | 26 | 184 | 29 | 176 | 7.23e-23 | 90.5 |
| Msa0126130 | MtrunA17_Chr1g0150131 | 38.776 | 98 | 59 | 1 | 32 | 129 | 29 | 125 | 1.51e-21 | 87.0 |
| Msa0126130 | MtrunA17_Chr2g0331181 | 32.895 | 152 | 92 | 3 | 6 | 152 | 7 | 153 | 1.39e-20 | 84.7 |
| Msa0126130 | MtrunA17_Chr5g0394321 | 31.351 | 185 | 113 | 5 | 11 | 192 | 7 | 180 | 6.15e-20 | 82.8 |
| Msa0126130 | MtrunA17_Chr3g0136871 | 33.540 | 161 | 93 | 6 | 32 | 190 | 31 | 179 | 3.12e-19 | 80.9 |
| Msa0126130 | MtrunA17_Chr4g0040291 | 35.200 | 125 | 76 | 3 | 28 | 150 | 24 | 145 | 6.34e-19 | 80.1 |
| Msa0126130 | MtrunA17_Chr2g0324721 | 36.538 | 104 | 63 | 1 | 26 | 129 | 24 | 124 | 6.36e-19 | 80.5 |
| Msa0126130 | MtrunA17_Chr4g0041811 | 35.514 | 107 | 68 | 1 | 23 | 129 | 26 | 131 | 1.05e-18 | 80.5 |
| Msa0126130 | MtrunA17_Chr2g0324711 | 35.246 | 122 | 73 | 2 | 8 | 129 | 7 | 122 | 2.40e-18 | 81.6 |
| Msa0126130 | MtrunA17_Chr2g0319611 | 36.111 | 108 | 68 | 1 | 23 | 129 | 20 | 127 | 2.31e-17 | 77.4 |
| Msa0126130 | MtrunA17_Chr8g0385041 | 38.655 | 119 | 68 | 3 | 27 | 145 | 23 | 136 | 5.93e-17 | 77.0 |
| Msa0126130 | MtrunA17_Chr8g0360371 | 28.689 | 122 | 84 | 1 | 8 | 129 | 3 | 121 | 9.58e-17 | 76.6 |
| Msa0126130 | MtrunA17_Chr2g0323021 | 32.836 | 134 | 75 | 5 | 32 | 156 | 29 | 156 | 3.30e-16 | 73.9 |
| Msa0126130 | MtrunA17_Chr8g0385031 | 33.051 | 118 | 76 | 2 | 13 | 129 | 7 | 122 | 3.09e-15 | 72.4 |
| Msa0126130 | MtrunA17_Chr2g0317231 | 32.759 | 116 | 69 | 4 | 26 | 138 | 22 | 131 | 1.75e-14 | 71.2 |
| Msa0126130 | MtrunA17_Chr6g0481491 | 28.226 | 124 | 82 | 3 | 7 | 129 | 5 | 122 | 2.53e-14 | 68.6 |
| Msa0126130 | MtrunA17_Chr4g0064041 | 30.345 | 145 | 84 | 4 | 13 | 152 | 8 | 140 | 9.42e-14 | 68.6 |
| Msa0126130 | MtrunA17_Chr4g0064041 | 32.673 | 101 | 67 | 1 | 29 | 129 | 191 | 290 | 1.06e-12 | 65.5 |
| Msa0126130 | MtrunA17_Chr8g0387804 | 33.333 | 99 | 64 | 1 | 31 | 129 | 31 | 127 | 1.03e-13 | 65.1 |
| Msa0126130 | MtrunA17_Chr8g0385021 | 33.051 | 118 | 76 | 2 | 13 | 129 | 7 | 122 | 1.39e-13 | 67.4 |
| Msa0126130 | MtrunA17_Chr1g0196801 | 29.448 | 163 | 102 | 6 | 29 | 189 | 23 | 174 | 1.53e-13 | 65.9 |
| Msa0126130 | MtrunA17_Chr8g0335531 | 27.011 | 174 | 117 | 4 | 24 | 193 | 19 | 186 | 3.69e-13 | 65.1 |
| Msa0126130 | MtrunA17_Chr4g0073901 | 29.126 | 103 | 71 | 2 | 28 | 129 | 28 | 129 | 6.54e-13 | 64.3 |
| Msa0126130 | MtrunA17_Chr6g0459441 | 33.028 | 109 | 66 | 4 | 23 | 130 | 20 | 122 | 7.24e-12 | 61.2 |
| Msa0126130 | MtrunA17_Chr8g0335571 | 32.381 | 105 | 65 | 2 | 25 | 129 | 20 | 118 | 1.27e-11 | 60.8 |
| Msa0126130 | MtrunA17_Chr3g0132411 | 31.683 | 101 | 63 | 2 | 29 | 129 | 65 | 159 | 4.49e-11 | 58.9 |
| Msa0126130 | MtrunA17_Chr1g0185541 | 37.879 | 66 | 41 | 0 | 64 | 129 | 5 | 70 | 5.03e-11 | 56.2 |
| Msa0126130 | MtrunA17_Chr8g0379081 | 34.146 | 123 | 71 | 4 | 76 | 193 | 1 | 118 | 5.74e-11 | 57.8 |
| Msa0126130 | MtrunA17_Chr1g0211101 | 27.344 | 128 | 87 | 2 | 8 | 134 | 12 | 134 | 7.16e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126130 | AT1G64640.1 | 55.280 | 161 | 60 | 4 | 9 | 162 | 6 | 161 | 3.87e-54 | 171 |
| Msa0126130 | AT3G20570.1 | 38.793 | 116 | 69 | 1 | 14 | 129 | 15 | 128 | 9.05e-27 | 101 |
| Msa0126130 | AT1G79800.1 | 38.843 | 121 | 71 | 2 | 28 | 147 | 33 | 151 | 3.24e-22 | 89.4 |
| Msa0126130 | AT1G48940.1 | 38.318 | 107 | 63 | 2 | 24 | 129 | 21 | 125 | 5.13e-22 | 88.6 |
| Msa0126130 | AT3G18590.1 | 37.864 | 103 | 61 | 2 | 28 | 129 | 26 | 126 | 9.36e-21 | 85.5 |
| Msa0126130 | AT4G31840.1 | 38.400 | 125 | 72 | 3 | 32 | 153 | 31 | 153 | 1.22e-20 | 84.7 |
| Msa0126130 | AT2G25060.1 | 39.000 | 100 | 57 | 2 | 30 | 129 | 36 | 131 | 1.32e-20 | 84.7 |
| Msa0126130 | AT5G57920.1 | 37.755 | 98 | 60 | 1 | 32 | 129 | 27 | 123 | 1.89e-20 | 84.3 |
| Msa0126130 | AT5G57920.2 | 37.755 | 98 | 60 | 1 | 32 | 129 | 26 | 122 | 3.38e-20 | 84.0 |
| Msa0126130 | AT5G57920.3 | 37.755 | 98 | 60 | 1 | 32 | 129 | 59 | 155 | 6.60e-20 | 84.0 |
| Msa0126130 | AT5G53870.2 | 35.152 | 165 | 95 | 6 | 8 | 169 | 12 | 167 | 7.10e-20 | 86.3 |
| Msa0126130 | AT5G53870.1 | 35.152 | 165 | 95 | 6 | 8 | 169 | 12 | 167 | 8.79e-20 | 85.9 |
| Msa0126130 | AT4G28365.1 | 32.867 | 143 | 87 | 5 | 27 | 166 | 27 | 163 | 3.14e-19 | 81.6 |
| Msa0126130 | AT4G27520.1 | 32.432 | 148 | 95 | 3 | 12 | 158 | 14 | 157 | 4.69e-19 | 83.6 |
| Msa0126130 | AT5G14345.1 | 32.061 | 131 | 83 | 2 | 14 | 144 | 5 | 129 | 6.71e-19 | 79.3 |
| Msa0126130 | AT4G32490.1 | 33.333 | 108 | 69 | 1 | 27 | 134 | 29 | 133 | 1.58e-18 | 80.5 |
| Msa0126130 | AT5G25090.1 | 31.967 | 122 | 81 | 2 | 9 | 129 | 6 | 126 | 2.35e-18 | 79.0 |
| Msa0126130 | AT2G32300.1 | 28.049 | 164 | 110 | 2 | 1 | 164 | 1 | 156 | 5.68e-18 | 79.7 |
| Msa0126130 | AT2G32300.2 | 28.049 | 164 | 110 | 2 | 1 | 164 | 31 | 186 | 5.87e-18 | 80.1 |
| Msa0126130 | AT4G30590.1 | 35.714 | 98 | 62 | 1 | 32 | 129 | 32 | 128 | 1.74e-17 | 77.0 |
| Msa0126130 | AT2G23990.1 | 37.374 | 99 | 60 | 2 | 32 | 129 | 31 | 128 | 2.44e-17 | 77.0 |
| Msa0126130 | AT5G26330.1 | 38.614 | 101 | 59 | 2 | 29 | 129 | 24 | 121 | 6.61e-17 | 75.1 |
| Msa0126130 | AT2G31050.1 | 32.857 | 140 | 87 | 4 | 5 | 142 | 6 | 140 | 9.45e-13 | 64.3 |
| Msa0126130 | AT2G23990.2 | 30.508 | 118 | 61 | 3 | 32 | 129 | 31 | 147 | 1.03e-12 | 64.7 |
| Msa0126130 | AT5G07475.1 | 30.400 | 125 | 72 | 4 | 31 | 155 | 32 | 141 | 1.93e-12 | 63.5 |
| Msa0126130 | AT1G45063.2 | 33.333 | 108 | 68 | 2 | 29 | 135 | 149 | 253 | 2.44e-12 | 64.3 |
| Msa0126130 | AT1G45063.1 | 33.333 | 108 | 68 | 2 | 29 | 135 | 149 | 253 | 2.84e-12 | 64.7 |
| Msa0126130 | AT2G26720.1 | 27.778 | 144 | 98 | 2 | 1 | 142 | 1 | 140 | 8.24e-12 | 62.0 |
| Msa0126130 | AT3G60270.1 | 31.132 | 106 | 67 | 2 | 24 | 129 | 21 | 120 | 3.56e-11 | 60.1 |
| Msa0126130 | AT3G17675.1 | 30.303 | 99 | 64 | 1 | 31 | 129 | 34 | 127 | 4.31e-11 | 58.5 |
Find 45 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCATGTGTTCATTAT+TGG | 0.102418 | 1_3:-55030959 | Msa0126130:CDS |
| AAGGGTGAAGTTGTGAAATT+TGG | 0.223732 | 1_3:+55031449 | None:intergenic |
| ACACATGAAAGTTTGAAATT+AGG | 0.261113 | 1_3:+55030969 | None:intergenic |
| CATATATCTGTTGGAGGAAT+TGG | 0.263666 | 1_3:-55031106 | Msa0126130:CDS |
| CCATTGTTCATAAACAATAT+TGG | 0.281321 | 1_3:+55031214 | None:intergenic |
| AAAACACTTTGGTTTGGATT+TGG | 0.318460 | 1_3:+55031550 | None:intergenic |
| CCCTCTTCACAAACAGTGTT+TGG | 0.328717 | 1_3:-55031031 | Msa0126130:CDS |
| TATTTCACAAGTGGAGAAAA+TGG | 0.337499 | 1_3:-55031154 | Msa0126130:CDS |
| ATCCACAAGTCTATGCTAAA+TGG | 0.353275 | 1_3:-55031473 | Msa0126130:CDS |
| CAGTCATAACAACTGGTTCT+TGG | 0.354742 | 1_3:-55031598 | Msa0126130:CDS |
| GTTGTTATGACTGGCCATTT+TGG | 0.356548 | 1_3:+55031608 | None:intergenic |
| GAAAATAATAGAAACCAAAA+TGG | 0.373724 | 1_3:-55031622 | Msa0126130:exon |
| TTAGATCTCCAACTTTGAAT+TGG | 0.398002 | 1_3:+55031523 | None:intergenic |
| GGTAGCAAAACACTTTGGTT+TGG | 0.401653 | 1_3:+55031544 | None:intergenic |
| AGTTGGAGATCTAAATGCTT+GGG | 0.404972 | 1_3:-55031514 | Msa0126130:CDS |
| TCAATCTGTAATTCTTTATG+TGG | 0.412274 | 1_3:-55030814 | Msa0126130:three_prime_UTR |
| CCAAACACTGTTTGTGAAGA+GGG | 0.433432 | 1_3:+55031031 | None:intergenic |
| TTTGATGAAGAAGGAGCTAC+TGG | 0.443782 | 1_3:+55031001 | None:intergenic |
| CAAAAGATTCATATATCTGT+TGG | 0.454335 | 1_3:-55031115 | Msa0126130:CDS |
| TGAGGTGAATTTGATGAAGA+AGG | 0.457613 | 1_3:+55030992 | None:intergenic |
| AAATTTCACAACTTCACCCT+TGG | 0.467456 | 1_3:-55031447 | Msa0126130:CDS |
| AAATGGCCAGTCATAACAAC+TGG | 0.486950 | 1_3:-55031605 | Msa0126130:CDS |
| ATCAATGAATCTTGACTTGG+TGG | 0.501009 | 1_3:+55031280 | None:intergenic |
| TGTGAAGAGGGTGCAGATGC+AGG | 0.517498 | 1_3:+55031043 | None:intergenic |
| TGGCTTTAATGTAAAAGCAA+AGG | 0.519119 | 1_3:-55030913 | Msa0126130:exon |
| GACCATTTAGCATAGACTTG+TGG | 0.528971 | 1_3:+55031471 | None:intergenic |
| AATGTTGATGCTGAAGCTAA+TGG | 0.532427 | 1_3:-55031082 | Msa0126130:CDS |
| GAATTGGTAGCAAAACACTT+TGG | 0.533380 | 1_3:+55031539 | None:intergenic |
| CCAATATTGTTTATGAACAA+TGG | 0.534060 | 1_3:-55031214 | Msa0126130:CDS |
| GATGCAGGCAATGAAGAACT+TGG | 0.536171 | 1_3:+55031058 | None:intergenic |
| AAGTTGGAGATCTAAATGCT+TGG | 0.539050 | 1_3:-55031515 | Msa0126130:CDS |
| GGTGATTTCTATTTCACAAG+TGG | 0.546187 | 1_3:-55031163 | Msa0126130:CDS |
| TCCAAACACTGTTTGTGAAG+AGG | 0.548927 | 1_3:+55031030 | None:intergenic |
| CAGTATTACGTACATAATCA+AGG | 0.554375 | 1_3:+55030766 | None:intergenic |
| AAGATTCATATATCTGTTGG+AGG | 0.558686 | 1_3:-55031112 | Msa0126130:CDS |
| GACTTGTGGATTTGCTGAGG+TGG | 0.563923 | 1_3:+55031485 | None:intergenic |
| CAAGAACCAGTTGTTATGAC+TGG | 0.565931 | 1_3:+55031599 | None:intergenic |
| ACTTACAAAGTGAGTCTCCA+AGG | 0.579525 | 1_3:+55031430 | None:intergenic |
| TTGTTTAACATAACATCACA+TGG | 0.586899 | 1_3:-55031184 | Msa0126130:CDS |
| TGAATCAATGAATCTTGACT+TGG | 0.587776 | 1_3:+55031277 | None:intergenic |
| ACTTGTGGATTTGCTGAGGT+GGG | 0.610232 | 1_3:+55031486 | None:intergenic |
| TGAAAGTTTGAAATTAGGTG+AGG | 0.611699 | 1_3:+55030974 | None:intergenic |
| GTTGGAGATCTAAATGCTTG+GGG | 0.615224 | 1_3:-55031513 | Msa0126130:CDS |
| ATAGACTTGTGGATTTGCTG+AGG | 0.672234 | 1_3:+55031482 | None:intergenic |
| CTTACAAAGTGAGTCTCCAA+GGG | 0.672775 | 1_3:+55031431 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCATTTTAAATTTTTG+GGG | + | chr1_3:55031667-55031686 | None:intergenic | 10.0% |
| !!! | AATTTCATTTTAAATTTTTG+GGG | + | chr1_3:55031667-55031686 | None:intergenic | 10.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | chr1_3:55030721-55030740 | None:intergenic | 15.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | chr1_3:55030721-55030740 | None:intergenic | 15.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | chr1_3:55030729-55030748 | Msa0126130:three_prime_UTR | 20.0% |
| !! | GTTGGAATATATTGTATATA+TGG | + | chr1_3:55030947-55030966 | None:intergenic | 20.0% |
| !! | TAAAATGAAATTAAGGAAGT+TGG | + | chr1_3:55030965-55030984 | None:intergenic | 20.0% |
| !! | GTAACACTAAAATGAAATTA+AGG | + | chr1_3:55030972-55030991 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | chr1_3:55031229-55031248 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAACAGTAGTG+AGG | + | chr1_3:55031637-55031656 | None:intergenic | 20.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | chr1_3:55030729-55030748 | Msa0126130:three_prime_UTR | 20.0% |
| !! | GTTGGAATATATTGTATATA+TGG | + | chr1_3:55030947-55030966 | None:intergenic | 20.0% |
| !! | TAAAATGAAATTAAGGAAGT+TGG | + | chr1_3:55030965-55030984 | None:intergenic | 20.0% |
| !! | GTAACACTAAAATGAAATTA+AGG | + | chr1_3:55030972-55030991 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | chr1_3:55031229-55031248 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAACAGTAGTG+AGG | + | chr1_3:55031637-55031656 | None:intergenic | 20.0% |
| ! | TAGTGTTACAAAACTCAAAA+AGG | - | chr1_3:55030983-55031002 | Msa0126130:CDS | 25.0% |
| ! | AGTGTTACAAAACTCAAAAA+GGG | - | chr1_3:55030984-55031003 | Msa0126130:CDS | 25.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | chr1_3:55031140-55031159 | None:intergenic | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | chr1_3:55031137-55031156 | Msa0126130:CDS | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | chr1_3:55031167-55031186 | Msa0126130:CDS | 25.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | chr1_3:55031236-55031255 | Msa0126130:CDS | 25.0% |
| !! | ACACATGAAAGTTTGAAATT+AGG | + | chr1_3:55031385-55031404 | None:intergenic | 25.0% |
| ! | AACTTTCATGTGTTCATTAT+TGG | - | chr1_3:55031392-55031411 | Msa0126130:intron | 25.0% |
| ! | TCAATCTGTAATTCTTTATG+TGG | - | chr1_3:55031537-55031556 | Msa0126130:CDS | 25.0% |
| ! | TAGTGTTACAAAACTCAAAA+AGG | - | chr1_3:55030983-55031002 | Msa0126130:CDS | 25.0% |
| ! | AGTGTTACAAAACTCAAAAA+GGG | - | chr1_3:55030984-55031003 | Msa0126130:CDS | 25.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | chr1_3:55031140-55031159 | None:intergenic | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | chr1_3:55031137-55031156 | Msa0126130:CDS | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | chr1_3:55031167-55031186 | Msa0126130:CDS | 25.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | chr1_3:55031236-55031255 | Msa0126130:CDS | 25.0% |
| !! | ACACATGAAAGTTTGAAATT+AGG | + | chr1_3:55031385-55031404 | None:intergenic | 25.0% |
| ! | AACTTTCATGTGTTCATTAT+TGG | - | chr1_3:55031392-55031411 | Msa0126130:intron | 25.0% |
| ! | TCAATCTGTAATTCTTTATG+TGG | - | chr1_3:55031537-55031556 | Msa0126130:CDS | 25.0% |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | chr1_3:55030804-55030823 | None:intergenic | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | chr1_3:55030820-55030839 | Msa0126130:three_prime_UTR | 30.0% |
| TTAGATCTCCAACTTTGAAT+TGG | + | chr1_3:55030831-55030850 | None:intergenic | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | chr1_3:55031077-55031096 | None:intergenic | 30.0% | |
| TATTTCACAAGTGGAGAAAA+TGG | - | chr1_3:55031197-55031216 | Msa0126130:CDS | 30.0% | |
| AAGATTCATATATCTGTTGG+AGG | - | chr1_3:55031239-55031258 | Msa0126130:CDS | 30.0% | |
| ! | TGAAAGTTTGAAATTAGGTG+AGG | + | chr1_3:55031380-55031399 | None:intergenic | 30.0% |
| ! | TCTCATATATGCACTGTTTT+TGG | - | chr1_3:55031418-55031437 | Msa0126130:intron | 30.0% |
| !! | TGGCTTTAATGTAAAAGCAA+AGG | - | chr1_3:55031438-55031457 | Msa0126130:CDS | 30.0% |
| CAGTATTACGTACATAATCA+AGG | + | chr1_3:55031588-55031607 | None:intergenic | 30.0% | |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | chr1_3:55030804-55030823 | None:intergenic | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | chr1_3:55030820-55030839 | Msa0126130:three_prime_UTR | 30.0% |
| TTAGATCTCCAACTTTGAAT+TGG | + | chr1_3:55030831-55030850 | None:intergenic | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | chr1_3:55031077-55031096 | None:intergenic | 30.0% | |
| TATTTCACAAGTGGAGAAAA+TGG | - | chr1_3:55031197-55031216 | Msa0126130:CDS | 30.0% | |
| AAGATTCATATATCTGTTGG+AGG | - | chr1_3:55031239-55031258 | Msa0126130:CDS | 30.0% | |
| ! | TGAAAGTTTGAAATTAGGTG+AGG | + | chr1_3:55031380-55031399 | None:intergenic | 30.0% |
| ! | TCTCATATATGCACTGTTTT+TGG | - | chr1_3:55031418-55031437 | Msa0126130:intron | 30.0% |
| !! | TGGCTTTAATGTAAAAGCAA+AGG | - | chr1_3:55031438-55031457 | Msa0126130:CDS | 30.0% |
| CAGTATTACGTACATAATCA+AGG | + | chr1_3:55031588-55031607 | None:intergenic | 30.0% | |
| CCAATAAAAAGTCCTTGTTG+CGG | - | chr1_3:55030690-55030709 | Msa0126130:three_prime_UTR | 35.0% | |
| CAATAAAAAGTCCTTGTTGC+GGG | - | chr1_3:55030691-55030710 | Msa0126130:three_prime_UTR | 35.0% | |
| AATAAAAAGTCCTTGTTGCG+GGG | - | chr1_3:55030692-55030711 | Msa0126130:three_prime_UTR | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | chr1_3:55030815-55030834 | None:intergenic | 35.0% |
| AAGTTGGAGATCTAAATGCT+TGG | - | chr1_3:55030836-55030855 | Msa0126130:three_prime_UTR | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | chr1_3:55030837-55030856 | Msa0126130:three_prime_UTR | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | chr1_3:55030878-55030897 | Msa0126130:three_prime_UTR | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | chr1_3:55030905-55030924 | None:intergenic | 35.0% | |
| AAATTTCACAACTTCACCCT+TGG | - | chr1_3:55030904-55030923 | Msa0126130:exon | 35.0% | |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | chr1_3:55031074-55031093 | None:intergenic | 35.0% |
| GGTGATTTCTATTTCACAAG+TGG | - | chr1_3:55031188-55031207 | Msa0126130:CDS | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | chr1_3:55031245-55031264 | Msa0126130:CDS | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | chr1_3:55031269-55031288 | Msa0126130:CDS | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | chr1_3:55031362-55031381 | None:intergenic | 35.0% | |
| CCAATAAAAAGTCCTTGTTG+CGG | - | chr1_3:55030690-55030709 | Msa0126130:three_prime_UTR | 35.0% | |
| CAATAAAAAGTCCTTGTTGC+GGG | - | chr1_3:55030691-55030710 | Msa0126130:three_prime_UTR | 35.0% | |
| AATAAAAAGTCCTTGTTGCG+GGG | - | chr1_3:55030692-55030711 | Msa0126130:three_prime_UTR | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | chr1_3:55030815-55030834 | None:intergenic | 35.0% |
| AAGTTGGAGATCTAAATGCT+TGG | - | chr1_3:55030836-55030855 | Msa0126130:three_prime_UTR | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | chr1_3:55030837-55030856 | Msa0126130:three_prime_UTR | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | chr1_3:55030878-55030897 | Msa0126130:three_prime_UTR | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | chr1_3:55030905-55030924 | None:intergenic | 35.0% | |
| AAATTTCACAACTTCACCCT+TGG | - | chr1_3:55030904-55030923 | Msa0126130:exon | 35.0% | |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | chr1_3:55031074-55031093 | None:intergenic | 35.0% |
| GGTGATTTCTATTTCACAAG+TGG | - | chr1_3:55031188-55031207 | Msa0126130:CDS | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | chr1_3:55031245-55031264 | Msa0126130:CDS | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | chr1_3:55031269-55031288 | Msa0126130:CDS | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | chr1_3:55031362-55031381 | None:intergenic | 35.0% | |
| ! | CCGCAACAAGGACTTTTTAT+TGG | + | chr1_3:55030693-55030712 | None:intergenic | 40.0% |
| ATAAAAAGTCCTTGTTGCGG+GGG | - | chr1_3:55030693-55030712 | Msa0126130:three_prime_UTR | 40.0% | |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | chr1_3:55030746-55030765 | None:intergenic | 40.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | chr1_3:55030746-55030765 | Msa0126130:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | chr1_3:55030755-55030774 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | chr1_3:55030753-55030772 | Msa0126130:three_prime_UTR | 40.0% |
| GGTAGCAAAACACTTTGGTT+TGG | + | chr1_3:55030810-55030829 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | chr1_3:55030838-55030857 | Msa0126130:three_prime_UTR | 40.0% | |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | chr1_3:55030872-55030891 | None:intergenic | 40.0% |
| GACCATTTAGCATAGACTTG+TGG | + | chr1_3:55030883-55030902 | None:intergenic | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | chr1_3:55030923-55030942 | None:intergenic | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | chr1_3:55030924-55030943 | None:intergenic | 40.0% | |
| CCAAACACTGTTTGTGAAGA+GGG | + | chr1_3:55031323-55031342 | None:intergenic | 40.0% | |
| TCCAAACACTGTTTGTGAAG+AGG | + | chr1_3:55031324-55031343 | None:intergenic | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | chr1_3:55031353-55031372 | None:intergenic | 40.0% | |
| ! | CCGCAACAAGGACTTTTTAT+TGG | + | chr1_3:55030693-55030712 | None:intergenic | 40.0% |
| ATAAAAAGTCCTTGTTGCGG+GGG | - | chr1_3:55030693-55030712 | Msa0126130:three_prime_UTR | 40.0% | |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | chr1_3:55030746-55030765 | None:intergenic | 40.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | chr1_3:55030746-55030765 | Msa0126130:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | chr1_3:55030755-55030774 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | chr1_3:55030753-55030772 | Msa0126130:three_prime_UTR | 40.0% |
| GGTAGCAAAACACTTTGGTT+TGG | + | chr1_3:55030810-55030829 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | chr1_3:55030838-55030857 | Msa0126130:three_prime_UTR | 40.0% | |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | chr1_3:55030872-55030891 | None:intergenic | 40.0% |
| GACCATTTAGCATAGACTTG+TGG | + | chr1_3:55030883-55030902 | None:intergenic | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | chr1_3:55030923-55030942 | None:intergenic | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | chr1_3:55030924-55030943 | None:intergenic | 40.0% | |
| CCAAACACTGTTTGTGAAGA+GGG | + | chr1_3:55031323-55031342 | None:intergenic | 40.0% | |
| TCCAAACACTGTTTGTGAAG+AGG | + | chr1_3:55031324-55031343 | None:intergenic | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | chr1_3:55031353-55031372 | None:intergenic | 40.0% | |
| TAAAAAGTCCTTGTTGCGGG+GGG | - | chr1_3:55030694-55030713 | Msa0126130:three_prime_UTR | 45.0% | |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | chr1_3:55030868-55030887 | None:intergenic | 45.0% |
| GATGCAGGCAATGAAGAACT+TGG | + | chr1_3:55031296-55031315 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+TGG | - | chr1_3:55031320-55031339 | Msa0126130:intron | 45.0% | |
| TAAAAAGTCCTTGTTGCGGG+GGG | - | chr1_3:55030694-55030713 | Msa0126130:three_prime_UTR | 45.0% | |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | chr1_3:55030868-55030887 | None:intergenic | 45.0% |
| GATGCAGGCAATGAAGAACT+TGG | + | chr1_3:55031296-55031315 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+TGG | - | chr1_3:55031320-55031339 | Msa0126130:intron | 45.0% | |
| !!! | AAATTTCATTTTAAATTTTT+GGG | + | chr1_3:55031668-55031687 | None:intergenic | 5.0% |
| !!! | AAAATTTCATTTTAAATTTT+TGG | + | chr1_3:55031669-55031688 | None:intergenic | 5.0% |
| !!! | AAATTTCATTTTAAATTTTT+GGG | + | chr1_3:55031668-55031687 | None:intergenic | 5.0% |
| !!! | AAAATTTCATTTTAAATTTT+TGG | + | chr1_3:55031669-55031688 | None:intergenic | 5.0% |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | chr1_3:55030869-55030888 | None:intergenic | 50.0% |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | chr1_3:55030869-55030888 | None:intergenic | 50.0% |
| ! | ATTTAGGACCCCCCGCAACA+AGG | + | chr1_3:55030705-55030724 | None:intergenic | 55.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | chr1_3:55031311-55031330 | None:intergenic | 55.0% |
| ! | ATTTAGGACCCCCCGCAACA+AGG | + | chr1_3:55030705-55030724 | None:intergenic | 55.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | chr1_3:55031311-55031330 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55030683 | 55031690 | 55030683 | ID=Msa0126130;Name=Msa0126130 |
| chr1_3 | mRNA | 55030683 | 55031690 | 55030683 | ID=Msa0126130-mRNA-1;Parent=Msa0126130;Name=Msa0126130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=65|1|1|1|1|1|2|239|193 |
| chr1_3 | exon | 55030683 | 55031313 | 55030683 | ID=Msa0126130-mRNA-1:exon:17007;Parent=Msa0126130-mRNA-1 |
| chr1_3 | exon | 55031436 | 55031690 | 55031436 | ID=Msa0126130-mRNA-1:exon:17006;Parent=Msa0126130-mRNA-1 |
| chr1_3 | five_prime_UTR | 55031626 | 55031690 | 55031626 | ID=Msa0126130-mRNA-1:five_prime_utr;Parent=Msa0126130-mRNA-1 |
| chr1_3 | CDS | 55031436 | 55031625 | 55031436 | ID=Msa0126130-mRNA-1:cds;Parent=Msa0126130-mRNA-1 |
| chr1_3 | CDS | 55030922 | 55031313 | 55030922 | ID=Msa0126130-mRNA-1:cds;Parent=Msa0126130-mRNA-1 |
| chr1_3 | three_prime_UTR | 55030683 | 55030921 | 55030683 | ID=Msa0126130-mRNA-1:three_prime_utr;Parent=Msa0126130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
