AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041170 MtrunA17_Chr7g0269871 97.409 772 19 1 1 772 1 771 0.0 1555
Msa1041170 MtrunA17_Chr1g0194841 81.675 764 135 3 10 772 6 765 0.0 1317
Msa1041170 MtrunA17_Chr2g0294751 68.519 756 228 4 10 763 8 755 0.0 1088
Msa1041170 MtrunA17_Chr4g0050591 58.412 743 291 7 29 762 39 772 0.0 889
Msa1041170 MtrunA17_Chr2g0278761 56.641 768 321 7 1 763 14 774 0.0 883
Msa1041170 MtrunA17_Chr1g0207281 53.034 758 344 6 8 754 19 775 0.0 809
Msa1041170 MtrunA17_Chr5g0411571 48.257 746 357 10 42 763 41 781 0.0 751
Msa1041170 MtrunA17_Chr3g0115601 47.692 780 376 13 4 762 6 774 0.0 734
Msa1041170 MtrunA17_Chr5g0425471 46.735 781 389 11 4 762 5 780 0.0 732
Msa1041170 MtrunA17_Chr5g0425431 46.301 784 386 14 5 762 4 778 0.0 718
Msa1041170 MtrunA17_Chr5g0425451 46.709 790 386 14 5 767 4 785 0.0 715
Msa1041170 MtrunA17_Chr5g0425531 44.942 781 402 12 6 762 7 783 0.0 701
Msa1041170 MtrunA17_Chr6g0461221 25.361 623 353 22 29 580 15 596 2.08e-38 152
Msa1041170 MtrunA17_Chr6g0461231 27.134 656 369 27 29 623 14 621 5.22e-38 150
Msa1041170 MtrunA17_Chr3g0104081 26.768 594 339 27 50 580 29 589 8.33e-38 150
Msa1041170 MtrunA17_Chr6g0461191 26.316 627 358 25 16 580 11 595 1.64e-36 146
Msa1041170 MtrunA17_Chr6g0461211 25.619 687 368 31 11 623 4 621 1.03e-33 137
Msa1041170 MtrunA17_Chr5g0429581 26.095 525 313 21 87 580 93 573 1.48e-32 134
Msa1041170 MtrunA17_Chr5g0429541 26.437 522 297 23 89 580 95 559 1.25e-31 130
Msa1041170 MtrunA17_Chr7g0253561 25.268 653 361 30 41 623 2 597 6.86e-31 129
Msa1041170 MtrunA17_Chr3g0118971 26.325 604 335 30 47 580 32 595 4.80e-30 126
Msa1041170 MtrunA17_Chr2g0292341 26.067 656 364 32 35 623 22 623 8.56e-28 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041170 AT1G02640.1 73.491 762 194 4 13 772 13 768 0.0 1183
Msa1041170 AT5G49360.1 69.261 758 225 7 13 765 19 773 0.0 1073
Msa1041170 AT5G64570.1 58.656 774 303 10 3 763 14 783 0.0 902
Msa1041170 AT5G09730.1 56.454 767 321 8 5 762 9 771 0.0 877
Msa1041170 AT3G19620.1 53.050 754 338 6 12 754 10 758 0.0 833
Msa1041170 AT5G64570.2 59.777 629 241 7 143 763 1 625 0.0 756
Msa1041170 AT5G64570.3 62.995 581 205 6 3 575 14 592 0.0 735
Msa1041170 AT1G78060.1 47.417 755 373 10 17 755 12 758 0.0 734
Msa1041170 AT5G10560.1 46.366 798 380 12 5 763 3 791 0.0 730
Msa1041170 AT5G09700.1 53.608 485 213 6 285 762 45 524 7.76e-177 518
Msa1041170 AT3G47000.1 28.881 599 321 25 50 580 17 578 2.53e-42 163
Msa1041170 AT3G47050.1 28.407 609 335 25 39 582 6 578 3.69e-41 160
Msa1041170 AT3G47040.4 26.537 618 345 26 35 582 2 580 2.40e-40 157
Msa1041170 AT3G47010.1 26.080 602 352 25 43 582 11 581 2.49e-36 145
Msa1041170 AT3G47040.1 25.786 636 352 28 35 582 2 605 8.04e-36 144
Msa1041170 AT3G47010.2 26.080 602 351 26 43 582 11 580 8.01e-35 141
Msa1041170 AT3G47000.3 30.233 430 223 18 50 423 17 425 3.41e-33 134
Msa1041170 AT3G62710.1 24.580 655 379 27 41 622 36 648 1.02e-31 132
Msa1041170 AT3G47040.3 27.703 444 246 19 35 423 2 425 1.48e-31 129
Msa1041170 AT5G04885.2 26.570 621 345 26 29 580 35 613 1.92e-30 128
Msa1041170 AT5G04885.3 26.570 621 345 26 29 580 18 596 2.17e-30 128
Msa1041170 AT5G04885.1 26.570 621 345 26 29 580 18 596 2.17e-30 128
Msa1041170 AT5G20950.3 27.287 656 356 32 33 623 97 696 2.06e-29 125
Msa1041170 AT5G20950.2 27.287 656 356 32 33 623 19 618 3.08e-29 124
Msa1041170 AT5G20950.1 27.287 656 356 32 33 623 19 618 3.08e-29 124
Msa1041170 AT3G47010.4 26.872 454 255 18 43 440 11 443 1.82e-28 120
Msa1041170 AT3G47000.2 28.873 426 245 18 186 580 3 401 1.94e-27 116
Msa1041170 AT3G47040.2 24.111 647 357 26 35 582 2 613 5.10e-27 117
Msa1041170 AT5G20940.1 24.847 652 365 27 41 622 25 621 3.17e-25 111
Msa1041170 AT3G47010.3 26.869 428 259 18 170 582 14 402 1.12e-24 108
Msa1041170 AT3G47050.2 28.000 375 204 14 39 362 6 365 3.85e-23 102

Find 228 sgRNAs with CRISPR-Local

Find 604 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTCTCCCATTTCTTTC+TGG 0.085241 7_1:-78700376 Msa1041170:three_prime_UTR
CAGCTTATGATGTTGATAAT+TGG 0.194676 7_1:-78705374 Msa1041170:CDS
CATATTGTGGGCGGGTTATC+CGG 0.194753 7_1:-78701313 Msa1041170:CDS
TGTAGAGATGATAAACAATT+TGG 0.195462 7_1:-78701564 Msa1041170:CDS
TTAATAAAACTTCTAGCTTT+TGG 0.207770 7_1:-78700333 Msa1041170:three_prime_UTR
CACAATATGCCAGCAACTTT+GGG 0.214900 7_1:+78701327 None:intergenic
ATCAAAGGGACCAACTATTT+TGG 0.216528 7_1:-78701397 Msa1041170:CDS
GAGCAGCAGGGTTAACTTAT+TGG 0.223733 7_1:-78705560 Msa1041170:CDS
AGAAATTTGTTGATATATAT+TGG 0.229876 7_1:-78700513 Msa1041170:three_prime_UTR
GCTGGTTTACACACATCTTT+AGG 0.235705 7_1:+78702032 None:intergenic
CATTTCTTTCTGGTTTGTTT+AGG 0.247030 7_1:-78700366 Msa1041170:three_prime_UTR
AGAAAACAGTTCGTGGAGTA+TGG 0.252637 7_1:-78702801 Msa1041170:CDS
ACACATTTGATGTACCATTT+AGG 0.259080 7_1:-78702915 Msa1041170:CDS
AGATTTGGTGGTTTGTTTCC+TGG 0.264252 7_1:-78708685 Msa1041170:CDS
CTTAGTGTAGTTGATAAATC+TGG 0.274887 7_1:-78700660 Msa1041170:CDS
TTGAATACTATGATGGCTTT+TGG 0.279747 7_1:-78700300 Msa1041170:three_prime_UTR
GCAAGTTTCACATTGCAAAA+TGG 0.288046 7_1:+78708868 None:intergenic
CACCGAACTGTGGCTGTCAT+TGG 0.298747 7_1:-78701921 Msa1041170:CDS
GAGCCATCAGCTCAAGCTTA+TGG 0.309828 7_1:-78702065 Msa1041170:CDS
TAGAATCTATATGTTCTTCC+TGG 0.310906 7_1:+78701050 None:intergenic
TCCTTCACACACATCCTAAA+TGG 0.314863 7_1:+78702901 None:intergenic
CCACAGTTCGGTGGCGTTGT+GGG 0.316217 7_1:+78701931 None:intergenic
GCATCAGCAGCAGCTTCTTC+TGG 0.323818 7_1:+78702597 None:intergenic
GCTTCTTTGTGGGAGGCTAT+TGG 0.324022 7_1:-78708616 Msa1041170:CDS
TGAGAATGTGGGAAACATTT+TGG 0.324959 7_1:+78708996 None:intergenic
AAACTTGGCCATGACAAATA+TGG 0.327012 7_1:-78701099 Msa1041170:CDS
GGTAACCGTGACATCGGAAT+TGG 0.330315 7_1:+78701896 None:intergenic
TGATGTTGCAGGTTTGGATT+TGG 0.335227 7_1:-78702216 Msa1041170:intron
CCACAATATGCCAGCAACTT+TGG 0.338607 7_1:+78701326 None:intergenic
ATGGAACTAGCCTGCTTTGA+TGG 0.341997 7_1:+78702575 None:intergenic
TCAACAAATTTCTCTTTGAA+TGG 0.350820 7_1:+78700523 None:intergenic
CTGGTTTACACACATCTTTA+GGG 0.352334 7_1:+78702033 None:intergenic
CCTGGGTACCCTACTTTGCT+TGG 0.352787 7_1:+78701068 None:intergenic
TCTCTGAAAATGTTCACATT+TGG 0.361641 7_1:+78705534 None:intergenic
ATATCTTCCTATTCCTTGTA+AGG 0.364137 7_1:+78701626 None:intergenic
GATGTCACGGTTACCATGAT+TGG 0.364588 7_1:-78701888 Msa1041170:CDS
CTGCATGACGAGCTGCATCC+AGG 0.369023 7_1:+78701535 None:intergenic
TTGAAGGTGCAAATGAGATT+AGG 0.389022 7_1:-78702101 Msa1041170:CDS
TGAAGGTGCAAATGAGATTA+GGG 0.389563 7_1:-78702100 Msa1041170:CDS
CGTGGAGTATGGGGTCTTGA+TGG 0.390124 7_1:-78702790 Msa1041170:CDS
CAGGTTTGGATTTGGATTGT+GGG 0.390524 7_1:-78702208 Msa1041170:CDS
ATATGCTGCTAGTTATGTTA+AGG 0.395057 7_1:-78705454 Msa1041170:CDS
CATTGGTGATGTTAAGCATT+CGG 0.398561 7_1:-78700601 Msa1041170:CDS
CAGTTTCAGCTTCTATAGAT+TGG 0.401045 7_1:+78701484 None:intergenic
TTCCTTGTCTAGCAGCTTCA+AGG 0.402963 7_1:+78701994 None:intergenic
TCCTATTCCTTGTAAGGGGC+TGG 0.406262 7_1:+78701632 None:intergenic
TTGGATTGTGGGCCTTTCCT+AGG 0.413334 7_1:-78702197 Msa1041170:CDS
CTAAACAAACCAGAAAGAAA+TGG 0.414032 7_1:+78700367 None:intergenic
TATCTGATTGTGACTCTGTC+GGG 0.415127 7_1:-78702653 Msa1041170:CDS
AAGAATGACCCCAAAGTTGC+TGG 0.415236 7_1:-78701336 Msa1041170:CDS
ATATTGTGGGCGGGTTATCC+GGG 0.415597 7_1:-78701312 Msa1041170:CDS
TGCTAAGACTATTCATCAGC+TGG 0.416662 7_1:-78701604 Msa1041170:CDS
GTGTTCTCTGCTCCACCTAA+TGG 0.418795 7_1:-78700789 Msa1041170:CDS
GTGGGACCTGGTACTAGATT+TGG 0.418956 7_1:-78708700 Msa1041170:CDS
GTAGAGATGATAAACAATTT+GGG 0.420072 7_1:-78701563 Msa1041170:CDS
ACCCTTTGCTTAGTCTTGGC+AGG 0.421505 7_1:+78700711 None:intergenic
ACCAGCATAGTTTCCAATCA+TGG 0.422540 7_1:+78701875 None:intergenic
GGACCAGTCGTGTATCCATT+TGG 0.427074 7_1:-78701023 Msa1041170:CDS
ATGAGATTAGGGATGTTTGA+TGG 0.429107 7_1:-78702089 Msa1041170:CDS
TCTTGAAGAGAAGACATGTT+AGG 0.429216 7_1:-78700484 Msa1041170:three_prime_UTR
ATCAATATTGAATACTATGA+TGG 0.430187 7_1:-78700307 Msa1041170:three_prime_UTR
ACCGAACTGTGGCTGTCATT+GGG 0.431191 7_1:-78701920 Msa1041170:CDS
CCCTAGGTGGGGTCGTGGAC+AGG 0.431303 7_1:-78705511 Msa1041170:CDS
ATCAAATTATTTGACAGTAA+TGG 0.436277 7_1:+78700452 None:intergenic
TAGTTATGTTAAGGGGCTAC+AGG 0.438276 7_1:-78705445 Msa1041170:CDS
ATGTACAATGGAGGAGCAGC+AGG 0.438394 7_1:-78705573 Msa1041170:CDS
GTTCTTACAATCAAGTGAAT+GGG 0.439277 7_1:-78702855 Msa1041170:CDS
TGTTCTTACAATCAAGTGAA+TGG 0.443382 7_1:-78702856 Msa1041170:CDS
TAGTTGATAAATCTGGGATT+AGG 0.446021 7_1:-78700653 Msa1041170:CDS
AGGGCTAGCTCTTGATGAGC+TGG 0.446584 7_1:+78702014 None:intergenic
TATGCTGCTAGTTATGTTAA+GGG 0.454987 7_1:-78705453 Msa1041170:CDS
GCAGGTTTGGATTTGGATTG+TGG 0.455155 7_1:-78702209 Msa1041170:intron
TAGAAGCTGAAACTGTTGAT+AGG 0.459634 7_1:-78701476 Msa1041170:CDS
ATGAGATCCTTCACTCTCTC+TGG 0.460902 7_1:+78708841 None:intergenic
CGCAGGTGTTGTGGAGGAGG+AGG 0.462250 7_1:+78708944 None:intergenic
TGGTGGTCGGAGGCACTTCA+TGG 0.462301 7_1:-78708733 Msa1041170:CDS
CCAAAGTTGCTGGCATATTG+TGG 0.466892 7_1:-78701326 Msa1041170:CDS
GCGGGTTATCCGGGCCAAGC+TGG 0.466906 7_1:-78701303 Msa1041170:CDS
ACCCACAGTGGTGTCAGTTC+CGG 0.467398 7_1:-78700955 Msa1041170:CDS
TAAACAAACCAGAAAGAAAT+GGG 0.467943 7_1:+78700368 None:intergenic
GAGGAGGAGGAGGATGAAGA+GGG 0.472759 7_1:+78708957 None:intergenic
CACCTAATGGAGGTAACCAT+TGG 0.473068 7_1:-78700776 Msa1041170:CDS
GCCACAGTTCGGTGGCGTTG+TGG 0.473664 7_1:+78701930 None:intergenic
TCGCTTTCACTTTAATGCAC+TGG 0.473826 7_1:-78705340 Msa1041170:intron
GCTGCTGATGCCATCAAAGC+AGG 0.474540 7_1:-78702585 Msa1041170:intron
GGCTAGCACAGGGTCTTCAC+CGG 0.476107 7_1:+78705482 None:intergenic
GAGAGAGTGAAGGATCTCAT+TGG 0.481603 7_1:-78708838 Msa1041170:CDS
TGACGAGCTGCATCCAGGGC+AGG 0.482328 7_1:+78701540 None:intergenic
GAAAACAGTTCGTGGAGTAT+GGG 0.482826 7_1:-78702800 Msa1041170:CDS
TCTAACCCTTTGCTTAGTCT+TGG 0.483430 7_1:+78700707 None:intergenic
CTTCCATAAGCTTGAGCTGA+TGG 0.483514 7_1:+78702062 None:intergenic
TTAGTGTAGTTGATAAATCT+GGG 0.485145 7_1:-78700659 Msa1041170:CDS
AAAGGTGGCAGCTGCATCAA+AGG 0.485467 7_1:-78701412 Msa1041170:CDS
TCACTTCAAGCAGAAGCACT+TGG 0.485778 7_1:-78700576 Msa1041170:CDS
ACAAGATCTTGTTGATGTCC+AGG 0.487972 7_1:+78701438 None:intergenic
CGTCGCAGGTGTTGTGGAGG+AGG 0.488498 7_1:+78708941 None:intergenic
CTCTTAAAGAAAACAGTTCG+TGG 0.489484 7_1:-78702808 Msa1041170:CDS
GTAACCGTGACATCGGAATT+GGG 0.491717 7_1:+78701897 None:intergenic
GACATCAAAACCAAAATAGT+TGG 0.492876 7_1:+78701387 None:intergenic
GCAATGAGACCAAGCAAAGT+AGG 0.495961 7_1:-78701077 Msa1041170:CDS
GACATCAACGTGAAGGGCAA+TGG 0.500448 7_1:+78700851 None:intergenic
CATCCTGTGTGTGCACTCCT+AGG 0.502179 7_1:+78702180 None:intergenic
GAATGAATCACGTGCGTCGC+AGG 0.503196 7_1:+78708927 None:intergenic
TCTCATTGCCATATTTGTCA+TGG 0.504005 7_1:+78701091 None:intergenic
TCAACAAGATCTTGTTTCAA+AGG 0.504548 7_1:-78701430 Msa1041170:CDS
CACTTCAAGCAGAAGCACTT+GGG 0.508608 7_1:-78700575 Msa1041170:CDS
GCTCAAGCTTATGGAAGATT+AGG 0.511835 7_1:-78702056 Msa1041170:CDS
AGGTTGTCTCGGACGAAGCA+AGG 0.514943 7_1:-78705599 Msa1041170:CDS
TAAACAATTTGGGCCTGCCC+TGG 0.515041 7_1:-78701553 Msa1041170:CDS
AGGTGTTGTGGAGGAGGAGG+AGG 0.516295 7_1:+78708947 None:intergenic
GGACCTGGTACTAGATTTGG+TGG 0.516599 7_1:-78708697 Msa1041170:CDS
CACAGTTCGGTGGCGTTGTG+GGG 0.518272 7_1:+78701932 None:intergenic
GCCCAATGACAGCCACAGTT+CGG 0.519148 7_1:+78701919 None:intergenic
GCAGCACCACCAGCTTGGCC+CGG 0.519379 7_1:+78701294 None:intergenic
AGAGACCCTAGGTGGGGTCG+TGG 0.519726 7_1:-78705516 Msa1041170:CDS
CAAAGTTGCTGGCATATTGT+GGG 0.520314 7_1:-78701325 Msa1041170:CDS
TATGTTAATCCATGTCCAAA+TGG 0.521339 7_1:+78701008 None:intergenic
TGGTAATGTGCAGGTTGTCT+CGG 0.521800 7_1:-78705610 Msa1041170:intron
CAATTGCAGCACCACCAGCT+TGG 0.522386 7_1:+78701289 None:intergenic
ACCAGCCCCTTACAAGGAAT+AGG 0.526197 7_1:-78701633 Msa1041170:CDS
GTATCTGATTGTGACTCTGT+CGG 0.526814 7_1:-78702654 Msa1041170:CDS
AGCAGATGTGAATAATGCTT+TGG 0.527568 7_1:-78702132 Msa1041170:CDS
TCCTTGTCTAGCAGCTTCAA+GGG 0.531276 7_1:+78701995 None:intergenic
CTTTGTGGGAGGCTATTGGA+CGG 0.533160 7_1:-78708612 Msa1041170:CDS
GTGGAGTATGGGGTCTTGAT+GGG 0.536335 7_1:-78702789 Msa1041170:intron
TGAAGACTATGTTCTCCCAT+TGG 0.537870 7_1:+78700624 None:intergenic
CACGTGCGTCGCAGGTGTTG+TGG 0.538647 7_1:+78708935 None:intergenic
GGTTATCCGGGCCAAGCTGG+TGG 0.539763 7_1:-78701300 Msa1041170:CDS
ACCATGATTGGAAACTATGC+TGG 0.540156 7_1:-78701876 Msa1041170:intron
ATCTTCCTATTCCTTGTAAG+GGG 0.540564 7_1:+78701628 None:intergenic
TGCTTTGGTGAATACATTGA+AGG 0.541919 7_1:-78702117 Msa1041170:CDS
GGTGAAGACCCTGTGCTAGC+CGG 0.542174 7_1:-78705480 Msa1041170:CDS
GAACTTTCTCAAAAGCAACT+AGG 0.543425 7_1:+78700739 None:intergenic
ACCTAATGGAGGTAACCATT+GGG 0.543629 7_1:-78700775 Msa1041170:CDS
CCAAGCAAAGTAGGGTACCC+AGG 0.543790 7_1:-78701068 Msa1041170:CDS
GCCCTTGAAGCTGCTAGACA+AGG 0.546317 7_1:-78701996 Msa1041170:CDS
TTTGTGGGAGGCTATTGGAC+GGG 0.548197 7_1:-78708611 Msa1041170:intron
GGATATACCAGCCCCTTACA+AGG 0.548943 7_1:-78701639 Msa1041170:CDS
ACCCAATGGTTACCTCCATT+AGG 0.549144 7_1:+78700774 None:intergenic
AGATGCAACTATTCTAGTGA+TGG 0.551163 7_1:-78701514 Msa1041170:CDS
TTTGATGTCTGGTGGGCCTG+TGG 0.554424 7_1:-78701373 Msa1041170:CDS
GCTGAAACTGTTGATAGGAC+TGG 0.555249 7_1:-78701471 Msa1041170:CDS
AACTATTCTAGTGATGGGCT+TGG 0.555622 7_1:-78701508 Msa1041170:CDS
AGAATCTATATGTTCTTCCT+GGG 0.555805 7_1:+78701051 None:intergenic
CGGTGGCGTTGTGGGGAGAG+AGG 0.555922 7_1:+78701939 None:intergenic
TATCTTCCTATTCCTTGTAA+GGG 0.556757 7_1:+78701627 None:intergenic
TCTTGTGGGTACCATGTCAC+TGG 0.557428 7_1:+78701131 None:intergenic
GTGGTGTCAGTTCCGGTGCA+TGG 0.558892 7_1:-78700948 Msa1041170:CDS
CCTGTCCACGACCCCACCTA+GGG 0.559266 7_1:+78705511 None:intergenic
GTTGCTGGCATATTGTGGGC+GGG 0.561514 7_1:-78701321 Msa1041170:CDS
AAGGTGGCAGCTGCATCAAA+GGG 0.563006 7_1:-78701411 Msa1041170:CDS
TGCATGACGAGCTGCATCCA+GGG 0.565292 7_1:+78701536 None:intergenic
GGTTGTCTCGGACGAAGCAA+GGG 0.566041 7_1:-78705598 Msa1041170:CDS
TCTGTTAGTGAATAATGCTC+CGG 0.566762 7_1:-78708788 Msa1041170:CDS
GGTTTGGATCAGCACATGTA+GGG 0.567867 7_1:+78702830 None:intergenic
TCCTGCCAAGACTAAGCAAA+GGG 0.568141 7_1:-78700712 Msa1041170:CDS
CTGGCGTTGATGCATAATGC+TGG 0.569194 7_1:+78702616 None:intergenic
CAATGAGACCAAGCAAAGTA+GGG 0.570464 7_1:-78701076 Msa1041170:CDS
AGTTGCTGGCATATTGTGGG+CGG 0.571075 7_1:-78701322 Msa1041170:CDS
AGGTTTGGATCAGCACATGT+AGG 0.572366 7_1:+78702829 None:intergenic
TGGGATTAGGAGAATTCCAA+TGG 0.575301 7_1:-78700640 Msa1041170:CDS
AACAGACGGTAACAAGTTGA+AGG 0.575857 7_1:-78705421 Msa1041170:CDS
ACAAGATCTTGTTTCAAAGG+TGG 0.576713 7_1:-78701427 Msa1041170:CDS
TTTAGGATGTGTGTGAAGGA+AGG 0.580245 7_1:-78702898 Msa1041170:CDS
TGTGGGGAGAGAGGCAAAGT+AGG 0.580629 7_1:+78701948 None:intergenic
GTGCGTCGCAGGTGTTGTGG+AGG 0.585740 7_1:+78708938 None:intergenic
TCCTGTCCACGACCCCACCT+AGG 0.586492 7_1:+78705510 None:intergenic
TTTGCAAAAGTAATGTCCAC+AGG 0.587976 7_1:+78701357 None:intergenic
GAGATGTGAGAGTGAGAATG+TGG 0.590400 7_1:+78708984 None:intergenic
GATGCAACTATTCTAGTGAT+GGG 0.593173 7_1:-78701513 Msa1041170:CDS
GGTGTTTCAAACGTGGGACC+TGG 0.594704 7_1:-78708712 Msa1041170:CDS
TATGATGTTGATAATTGGAA+TGG 0.597120 7_1:-78705369 Msa1041170:CDS
GCTAGCACAGGGTCTTCACC+GGG 0.600172 7_1:+78705483 None:intergenic
GGTCGTGGACAGGAAACTCC+CGG 0.600572 7_1:-78705501 Msa1041170:CDS
ATAACTAGCAGCATATCTAC+CGG 0.601845 7_1:+78705461 None:intergenic
CTTCATGGTGTTTCAAACGT+GGG 0.603309 7_1:-78708718 Msa1041170:CDS
GCAGCGGTTGTGATAACTTG+AGG 0.604040 7_1:+78708649 None:intergenic
AAAACAGTTCGTGGAGTATG+GGG 0.604096 7_1:-78702799 Msa1041170:CDS
CCGGTGCATGGTCATCGACA+TGG 0.604267 7_1:-78700936 Msa1041170:CDS
CCATGTCGATGACCATGCAC+CGG 0.604288 7_1:+78700936 None:intergenic
GGGATTAGGAGAATTCCAAT+GGG 0.606939 7_1:-78700639 Msa1041170:CDS
TGGGCCCAATTCCGATGTCA+CGG 0.607511 7_1:-78701901 Msa1041170:CDS
AGTTATGTTAAGGGGCTACA+GGG 0.608059 7_1:-78705444 Msa1041170:CDS
GAAGCAAGGGCAATGTACAA+TGG 0.608620 7_1:-78705585 Msa1041170:CDS
GCTAAGACTATTCATCAGCT+GGG 0.609180 7_1:-78701603 Msa1041170:CDS
CCCACAACGCCACCGAACTG+TGG 0.609536 7_1:-78701931 Msa1041170:CDS
GCTCCGGCGGTTCCTAGAGT+CGG 0.611677 7_1:-78708772 Msa1041170:CDS
TTCGCGTGCAACGCAAAAGA+CGG 0.612454 7_1:-78708907 Msa1041170:CDS
TTATTTGGAACTGCTAACCC+AGG 0.613155 7_1:-78701258 Msa1041170:intron
CATATCTACCGGCTAGCACA+GGG 0.613295 7_1:+78705472 None:intergenic
TGTCCAAATGGATACACGAC+TGG 0.615694 7_1:+78701020 None:intergenic
GTCGTGTATCCATTTGGACA+TGG 0.617686 7_1:-78701017 Msa1041170:CDS
AATCATGGTAACCGTGACAT+CGG 0.617822 7_1:+78701890 None:intergenic
ACTTCATGGTGTTTCAAACG+TGG 0.625609 7_1:-78708719 Msa1041170:CDS
TGTGTGTGCACTCCTAGGAA+AGG 0.626000 7_1:+78702185 None:intergenic
TTCCTGCCAAGACTAAGCAA+AGG 0.628706 7_1:-78700713 Msa1041170:CDS
ATGCTGCTAGTTATGTTAAG+GGG 0.628737 7_1:-78705452 Msa1041170:CDS
AGATGTGAGAGTGAGAATGT+GGG 0.631120 7_1:+78708985 None:intergenic
CAATGGTTACCTCCATTAGG+TGG 0.633526 7_1:+78700777 None:intergenic
ACAATATGCCAGCAACTTTG+GGG 0.637083 7_1:+78701328 None:intergenic
AAACCACCAAATCTAGTACC+AGG 0.637932 7_1:+78708694 None:intergenic
AGAGTGACACATGCAAGATG+TGG 0.638729 7_1:-78700882 Msa1041170:CDS
CAATGACAGCCACAGTTCGG+TGG 0.639734 7_1:+78701922 None:intergenic
TTCTTACAATCAAGTGAATG+GGG 0.643775 7_1:-78702854 Msa1041170:CDS
AAGCTATGAGTGGTGGTCGG+AGG 0.643933 7_1:-78708743 Msa1041170:CDS
TGAGGAAAACTAGTAGCACC+AGG 0.644313 7_1:+78708667 None:intergenic
TTCTCTGCTCCACCTAATGG+AGG 0.650493 7_1:-78700786 Msa1041170:CDS
AAGAACATATAGATTCTACA+AGG 0.651377 7_1:-78701045 Msa1041170:CDS
AAGGGGCTACAGGGAACAGA+CGG 0.652426 7_1:-78705435 Msa1041170:CDS
TGTTGATAATTGGAATGGTG+TGG 0.652811 7_1:-78705364 Msa1041170:CDS
AGAAGCATTAAAAGAAGCAG+CGG 0.655929 7_1:+78708633 None:intergenic
GCAAGGGCAATGTACAATGG+AGG 0.657866 7_1:-78705582 Msa1041170:CDS
GAATGAAAAGCTATGAGTGG+TGG 0.659564 7_1:-78708750 Msa1041170:CDS
GAAAAGCTATGAGTGGTGGT+CGG 0.659624 7_1:-78708746 Msa1041170:CDS
ACCATTTAGGATGTGTGTGA+AGG 0.662576 7_1:-78702902 Msa1041170:CDS
GTTAGTGAATAATGCTCCGG+CGG 0.666592 7_1:-78708785 Msa1041170:CDS
ATCTGATTGTGACTCTGTCG+GGG 0.668063 7_1:-78702652 Msa1041170:CDS
TGCAATACCAGAGAGAGTGA+AGG 0.671354 7_1:-78708848 Msa1041170:CDS
GGAGAACATAGTCTTCACAT+TGG 0.674389 7_1:-78700618 Msa1041170:CDS
TCGGAATGAAAAGCTATGAG+TGG 0.676044 7_1:-78708753 Msa1041170:CDS
ACCGGAACTGACACCACTGT+GGG 0.678978 7_1:+78700954 None:intergenic
GAGGCAAGCTACCAGTGACA+TGG 0.683941 7_1:-78701142 Msa1041170:CDS
TGTACAATGGAGGAGCAGCA+GGG 0.698546 7_1:-78705572 Msa1041170:CDS
AGACGGTAACAAGTTGAAGG+TGG 0.701591 7_1:-78705418 Msa1041170:CDS
AGAACATATAGATTCTACAA+GGG 0.708494 7_1:-78701044 Msa1041170:CDS
ATTATCTAGTGCACCCACAG+TGG 0.712988 7_1:-78700967 Msa1041170:CDS
TTTCCTAGGAGTGCACACAC+AGG 0.714417 7_1:-78702183 Msa1041170:CDS
CACCGGAACTGACACCACTG+TGG 0.731462 7_1:+78700953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTTATTGATTTTATA+CGG - chr7_1:78700803-78700822 Msa1041170:CDS 10.0%
!!! TAATAAAAATTCAAGAATTT+TGG + chr7_1:78701027-78701046 None:intergenic 10.0%
!!! AAATTCTTGAATTTTTATTA+AGG - chr7_1:78701027-78701046 Msa1041170:CDS 10.0%
!!! TTTTACAAATTAAAAAAAGA+AGG + chr7_1:78701924-78701943 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr7_1:78702411-78702430 None:intergenic 10.0%
!!! AGTTAATATAATAAACTTTT+TGG + chr7_1:78704111-78704130 None:intergenic 10.0%
!!! TTGTTTTTCAATTTTTTTTA+TGG - chr7_1:78704911-78704930 Msa1041170:intron 10.0%
!!! GATTTAATTAATTTGTATTT+TGG - chr7_1:78705322-78705341 Msa1041170:intron 10.0%
!!! TGATTTAATATTTTTTTAAG+TGG + chr7_1:78705567-78705586 None:intergenic 10.0%
!!! TAATAATTGTATTAGTTTAT+AGG + chr7_1:78708010-78708029 None:intergenic 10.0%
!!! AATTGCAAAATCAATATTTT+TGG - chr7_1:78700710-78700729 Msa1041170:CDS 15.0%
!! GTCTATAAAAAAATATATGT+TGG - chr7_1:78700862-78700881 Msa1041170:CDS 15.0%
!! TTTGACTATTAAAAAAAATC+AGG + chr7_1:78701751-78701770 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr7_1:78702446-78702465 Msa1041170:intron 15.0%
!!! AATTACATTTTATTACTTAG+GGG + chr7_1:78702574-78702593 None:intergenic 15.0%
!!! GAATTACATTTTATTACTTA+GGG + chr7_1:78702575-78702594 None:intergenic 15.0%
!!! TGAATTACATTTTATTACTT+AGG + chr7_1:78702576-78702595 None:intergenic 15.0%
!!! AATGTTTTTTTTTTACTTGT+TGG + chr7_1:78703506-78703525 None:intergenic 15.0%
!! AAAACTAATTAAAATTGAAC+AGG + chr7_1:78703885-78703904 None:intergenic 15.0%
!!! AAAATTTATTAGTCTGAATT+TGG - chr7_1:78704480-78704499 Msa1041170:intron 15.0%
!! TATCATTAATCACTTAAAAT+AGG - chr7_1:78704597-78704616 Msa1041170:intron 15.0%
!!! TTATTAATTTTTATTTGACC+AGG + chr7_1:78704853-78704872 None:intergenic 15.0%
!! AAAATGGTTTAAATATTGTT+TGG - chr7_1:78705272-78705291 Msa1041170:intron 15.0%
!!! TTAATATTTTTTTAAGTGGA+TGG + chr7_1:78705563-78705582 None:intergenic 15.0%
!!! CATGTTTTTTATTTTTGAAA+AGG - chr7_1:78705877-78705896 Msa1041170:intron 15.0%
!! TAATTGAATAACAGTTAATA+TGG + chr7_1:78706648-78706667 None:intergenic 15.0%
!! AATTATCATATTAAATGTTG+AGG - chr7_1:78706663-78706682 Msa1041170:intron 15.0%
!!! TGGATGATATTTTTAATATT+TGG - chr7_1:78706718-78706737 Msa1041170:intron 15.0%
!!! TAAAATCTTTTTGAATAAGA+GGG + chr7_1:78706909-78706928 None:intergenic 15.0%
!!! ATAAGAAAACATGTTTTTAT+AGG - chr7_1:78707522-78707541 Msa1041170:intron 15.0%
!!! AGAAATTTGTTGATATATAT+TGG - chr7_1:78708681-78708700 Msa1041170:CDS 15.0%
!!! ATAAAATTGTTTGCAATTTT+TGG - chr7_1:78708763-78708782 Msa1041170:CDS 15.0%
!!! TAAAATTGTTTGCAATTTTT+GGG - chr7_1:78708764-78708783 Msa1041170:CDS 15.0%
!! ATCTTATAAAAATGATAGAA+AGG + chr7_1:78708949-78708968 None:intergenic 15.0%
!!! TTTCTATCATTTTTATAAGA+TGG - chr7_1:78708948-78708967 Msa1041170:CDS 15.0%
!!! TTCTATCATTTTTATAAGAT+GGG - chr7_1:78708949-78708968 Msa1041170:CDS 15.0%
!! AGTATTATCATTTACTTTGT+TGG - chr7_1:78700986-78701005 Msa1041170:CDS 20.0%
!!! AGTGAATCTAATTTTTCAAT+GGG - chr7_1:78701128-78701147 Msa1041170:CDS 20.0%
!!! GTTATATATATCTAGAATAG+AGG - chr7_1:78701243-78701262 Msa1041170:intron 20.0%
!! GCATGTGAATATTAAAAAAT+TGG - chr7_1:78701588-78701607 Msa1041170:CDS 20.0%
!! AAATTCAAGCAAATTTATTC+AGG - chr7_1:78701643-78701662 Msa1041170:CDS 20.0%
!!! AAACCCTTTTTTAATTTGTA+AGG - chr7_1:78701770-78701789 Msa1041170:intron 20.0%
!!! AACCCTTTTTTAATTTGTAA+GGG - chr7_1:78701771-78701790 Msa1041170:intron 20.0%
!!! ATTTTAAAAAGTTGATGATG+TGG - chr7_1:78702002-78702021 Msa1041170:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr7_1:78702271-78702290 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr7_1:78702308-78702327 None:intergenic 20.0%
!! ATGTTACTGTATATTGTATT+TGG + chr7_1:78702340-78702359 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr7_1:78702386-78702405 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr7_1:78702445-78702464 Msa1041170:intron 20.0%
!!! GAACTTTTTGTGTATATTAT+TGG + chr7_1:78702495-78702514 None:intergenic 20.0%
!!! TGAGAATCTTTTCAAATTAA+TGG - chr7_1:78702796-78702815 Msa1041170:CDS 20.0%
!! GTCTAAAAATTGTCATAAAA+TGG + chr7_1:78702853-78702872 None:intergenic 20.0%
!! TATCATTGCTCTTATATAAA+AGG - chr7_1:78703000-78703019 Msa1041170:intron 20.0%
!! CTATATAAAAAATGGATGTA+CGG + chr7_1:78703045-78703064 None:intergenic 20.0%
!!! GTACATCCATTTTTTATATA+GGG - chr7_1:78703044-78703063 Msa1041170:intron 20.0%
!! CTAAAACCCTATATAAAAAA+TGG + chr7_1:78703053-78703072 None:intergenic 20.0%
!! AAAATGTAAAATATTCAACG+AGG - chr7_1:78703559-78703578 Msa1041170:intron 20.0%
!! AAATGTAAAATATTCAACGA+GGG - chr7_1:78703560-78703579 Msa1041170:intron 20.0%
!!! ATATAATAAACTTTTTGGTC+AGG + chr7_1:78704106-78704125 None:intergenic 20.0%
!!! TTTTCTTATCTGTTTGTTTT+TGG - chr7_1:78704238-78704257 Msa1041170:intron 20.0%
!!! GTTTTTTTTTTTGAAGAAAG+AGG - chr7_1:78704348-78704367 Msa1041170:intron 20.0%
!!! AATGTTTTTGTTCATGTTTT+TGG + chr7_1:78704396-78704415 None:intergenic 20.0%
!! ATTTACACCTAAATTTATGT+TGG - chr7_1:78704534-78704553 Msa1041170:intron 20.0%
!!! TTTGTTAAGTTTTTCTACAA+AGG + chr7_1:78704792-78704811 None:intergenic 20.0%
!!! AAATGGTGAATTGAATTTTT+GGG + chr7_1:78705164-78705183 None:intergenic 20.0%
!!! AAAATGGTGAATTGAATTTT+TGG + chr7_1:78705165-78705184 None:intergenic 20.0%
!!! ATTTTCGTTGATAGAAAAAA+TGG - chr7_1:78705256-78705275 Msa1041170:intron 20.0%
!! TAACTTTATATCATTTGAAG+AGG + chr7_1:78705457-78705476 None:intergenic 20.0%
!! AAGTTATTTAATCCATATGT+AGG - chr7_1:78705471-78705490 Msa1041170:CDS 20.0%
!! AGTTATTTAATCCATATGTA+GGG - chr7_1:78705472-78705491 Msa1041170:CDS 20.0%
!! AAACATGTTTGTATATTCAT+GGG + chr7_1:78705864-78705883 None:intergenic 20.0%
!! AAAACATGTTTGTATATTCA+TGG + chr7_1:78705865-78705884 None:intergenic 20.0%
!!! TTTTACTTGATAATGAGATA+AGG + chr7_1:78706475-78706494 None:intergenic 20.0%
!! ATAACAGTTAATATGGTTTA+TGG + chr7_1:78706641-78706660 None:intergenic 20.0%
!!! GTAAAATCTTTTTGAATAAG+AGG + chr7_1:78706910-78706929 None:intergenic 20.0%
!!! AACATTGATTTTATACTTCT+TGG + chr7_1:78706940-78706959 None:intergenic 20.0%
!!! TTTTTTAAAAATGATGTTGC+AGG - chr7_1:78706967-78706986 Msa1041170:intron 20.0%
!!! TAAAAAATCGATTTGAACTT+AGG + chr7_1:78707376-78707395 None:intergenic 20.0%
!! ATAATTACAATACGAATCAA+AGG + chr7_1:78707491-78707510 None:intergenic 20.0%
!! ATCAAATTATTTGACAGTAA+TGG + chr7_1:78708745-78708764 None:intergenic 20.0%
!!! TTAATAAAACTTCTAGCTTT+TGG - chr7_1:78708861-78708880 Msa1041170:CDS 20.0%
!! ATCAATATTGAATACTATGA+TGG - chr7_1:78708887-78708906 Msa1041170:CDS 20.0%
!! TTCTTTTAATGCTTCTTTGT+GGG - chr7_1:78700568-78700587 Msa1041170:CDS 25.0%
! TGTAGAAAATTAGCATAATG+TGG - chr7_1:78700911-78700930 Msa1041170:CDS 25.0%
! CTCTCAAAAAAAAAAAAGTG+TGG - chr7_1:78701097-78701116 Msa1041170:CDS 25.0%
!!! GAGTGAATCTAATTTTTCAA+TGG - chr7_1:78701127-78701146 Msa1041170:CDS 25.0%
! GCAATTTAATGTCAATGATT+TGG + chr7_1:78701325-78701344 None:intergenic 25.0%
! AATTTATTCAGGATGGATAT+TGG - chr7_1:78701654-78701673 Msa1041170:intron 25.0%
! CTCCCTTACAAATTAAAAAA+GGG + chr7_1:78701776-78701795 None:intergenic 25.0%
! ACTCCCTTACAAATTAAAAA+AGG + chr7_1:78701777-78701796 None:intergenic 25.0%
! AAAATCAATTACCTGATAAC+CGG + chr7_1:78701987-78702006 None:intergenic 25.0%
! ACTTTATGATATTCTAGATG+AGG + chr7_1:78702084-78702103 None:intergenic 25.0%
!!! TTTAATTTTGTTTTGCGGTA+TGG - chr7_1:78702206-78702225 Msa1041170:CDS 25.0%
!!! TTAATTTTGTTTTGCGGTAT+GGG - chr7_1:78702207-78702226 Msa1041170:CDS 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr7_1:78702272-78702291 None:intergenic 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG + chr7_1:78702293-78702312 None:intergenic 25.0%
!! TTGAAATGGATCAGTTATTT+TGG + chr7_1:78702294-78702313 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr7_1:78702387-78702406 None:intergenic 25.0%
! TGTATAAATAAAGGAGAAAG+TGG + chr7_1:78702402-78702421 None:intergenic 25.0%
!!! AAAAGTTCTAAACATAGCTA+TGG - chr7_1:78702507-78702526 Msa1041170:intron 25.0%
! AAAACAATGAAGAGAGAAAA+AGG + chr7_1:78702918-78702937 None:intergenic 25.0%
!!! TTTTTTCTCTCTCTTTTCAT+TGG + chr7_1:78702944-78702963 None:intergenic 25.0%
! AATGAAAAGAGAGAGAAAAA+AGG - chr7_1:78702943-78702962 Msa1041170:intron 25.0%
!!! CGTACATCCATTTTTTATAT+AGG - chr7_1:78703043-78703062 Msa1041170:intron 25.0%
!! AAGAACATGAATTCGATTTT+TGG + chr7_1:78703106-78703125 None:intergenic 25.0%
!!! GATACTTTGAAATGTCTATA+GGG - chr7_1:78703178-78703197 Msa1041170:intron 25.0%
! GAGGTCAAAAATTCTAATAA+AGG - chr7_1:78703200-78703219 Msa1041170:intron 25.0%
! GTCAAAAATTCTAATAAAGG+TGG - chr7_1:78703203-78703222 Msa1041170:intron 25.0%
! ATTAATTTCTCACAAAGCAA+GGG + chr7_1:78703282-78703301 None:intergenic 25.0%
! AACTTGTCTATCAATTTAGT+GGG - chr7_1:78703407-78703426 Msa1041170:intron 25.0%
!!! TATGATGTTGATAATTGGAA+TGG - chr7_1:78703825-78703844 Msa1041170:intron 25.0%
!!! TATCTGTTTGTTTTTGGATA+AGG - chr7_1:78704244-78704263 Msa1041170:intron 25.0%
! AAAACAATATTACCTCATGA+CGG + chr7_1:78704295-78704314 None:intergenic 25.0%
! ATTTAAAGAATCGAACTTTG+TGG + chr7_1:78704516-78704535 None:intergenic 25.0%
! CATTAATCACTTAAAATAGG+TGG - chr7_1:78704600-78704619 Msa1041170:intron 25.0%
! AAAAAGAAAACTTTCCTATG+GGG + chr7_1:78704655-78704674 None:intergenic 25.0%
! GAAAAAGAAAACTTTCCTAT+GGG + chr7_1:78704656-78704675 None:intergenic 25.0%
! TGAAAAAGAAAACTTTCCTA+TGG + chr7_1:78704657-78704676 None:intergenic 25.0%
!!! TAGGAAAGTTTTCTTTTTCA+TGG - chr7_1:78704657-78704676 Msa1041170:intron 25.0%
! TTGTGAATAATTAGATAACC+TGG - chr7_1:78704832-78704851 Msa1041170:intron 25.0%
!!! AATTGAATTTTTGGGTGTTA+TGG + chr7_1:78705156-78705175 None:intergenic 25.0%
! TCTATCAACGAAAATAGTAA+AGG + chr7_1:78705251-78705270 None:intergenic 25.0%
! ATGGTTTAAATATTGTTTGG+AGG - chr7_1:78705275-78705294 Msa1041170:intron 25.0%
!!! TTTCAGTATCTTCATTTTTC+TGG + chr7_1:78705415-78705434 None:intergenic 25.0%
!!! AATGGTTTGAAACTTTTTGT+TGG + chr7_1:78705521-78705540 None:intergenic 25.0%
! TTATTAAACTTTCCCATCAT+GGG - chr7_1:78705594-78705613 Msa1041170:CDS 25.0%
! TGATAGTATAAAATGCTTGA+CGG - chr7_1:78705925-78705944 Msa1041170:intron 25.0%
!! TGCAATTTTCATACAATTAC+AGG + chr7_1:78705962-78705981 None:intergenic 25.0%
!! TTTTGCAACATCATATTGTT+AGG - chr7_1:78706107-78706126 Msa1041170:intron 25.0%
! TTAGGCCATATATAGAAATA+TGG - chr7_1:78706125-78706144 Msa1041170:intron 25.0%
! ATGCATAATTGTGAAGTAAA+AGG + chr7_1:78706154-78706173 None:intergenic 25.0%
!!! TGCACATTAAGTTTTATGTT+AGG + chr7_1:78706236-78706255 None:intergenic 25.0%
! TAACATAAAACTTAATGTGC+AGG - chr7_1:78706235-78706254 Msa1041170:intron 25.0%
! TAGAGGATTCAAATTACAAT+CGG + chr7_1:78706840-78706859 None:intergenic 25.0%
! TTGAACTTAGGCTTATAATT+GGG + chr7_1:78707364-78707383 None:intergenic 25.0%
! TTTGAACTTAGGCTTATAAT+TGG + chr7_1:78707365-78707384 None:intergenic 25.0%
!!! TCAAATCGATTTTTTAAACG+CGG - chr7_1:78707380-78707399 Msa1041170:intron 25.0%
! TGTAGAGATGATAAACAATT+TGG - chr7_1:78707630-78707649 Msa1041170:intron 25.0%
! GTAGAGATGATAAACAATTT+GGG - chr7_1:78707631-78707650 Msa1041170:intron 25.0%
! TTTATAGGCTATTTGCAATT+GGG + chr7_1:78707995-78708014 None:intergenic 25.0%
! AAGAACATATAGATTCTACA+AGG - chr7_1:78708149-78708168 Msa1041170:intron 25.0%
! AGAACATATAGATTCTACAA+GGG - chr7_1:78708150-78708169 Msa1041170:intron 25.0%
!!! TTAGTGTAGTTGATAAATCT+GGG - chr7_1:78708535-78708554 Msa1041170:intron 25.0%
!! TTATCAAGTCTTGAATTTTC+AGG - chr7_1:78708643-78708662 Msa1041170:CDS 25.0%
! TCAACAAATTTCTCTTTGAA+TGG + chr7_1:78708674-78708693 None:intergenic 25.0%
! TAAACAAACCAGAAAGAAAT+GGG + chr7_1:78708829-78708848 None:intergenic 25.0%
! ATAAAAATGATAGAAAGGAG+AGG + chr7_1:78708944-78708963 None:intergenic 25.0%
! CTTCTTTTAATGCTTCTTTG+TGG - chr7_1:78700567-78700586 Msa1041170:CDS 30.0%
ACACTTAACACTTTGTAAGT+AGG + chr7_1:78701067-78701086 None:intergenic 30.0%
! TACTTACAAAGTGTTAAGTG+TGG - chr7_1:78701066-78701085 Msa1041170:CDS 30.0%
ACATTAAATTGCCTTGCAAT+TGG - chr7_1:78701333-78701352 Msa1041170:CDS 30.0%
TCAAGCAAATTTATTCAGGA+TGG - chr7_1:78701647-78701666 Msa1041170:CDS 30.0%
TATTCTCAGAAATCAGATCT+GGG - chr7_1:78701860-78701879 Msa1041170:intron 30.0%
!!! GGTGCTTTAATTTTGTTTTG+CGG - chr7_1:78702201-78702220 Msa1041170:CDS 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr7_1:78702450-78702469 Msa1041170:intron 30.0%
CTTGCTAGCAATAATAATCA+GGG - chr7_1:78702642-78702661 Msa1041170:CDS 30.0%
GAGAAAAAAGGTTGTCAAAT+AGG - chr7_1:78702955-78702974 Msa1041170:intron 30.0%
GTCAAATAGGTTGTACTAAA+TGG - chr7_1:78702968-78702987 Msa1041170:intron 30.0%
! GAATGTGGTATTGAAAATGT+TGG + chr7_1:78703152-78703171 None:intergenic 30.0%
!! GGATACTTTGAAATGTCTAT+AGG - chr7_1:78703177-78703196 Msa1041170:intron 30.0%
GATTAATTTCTCACAAAGCA+AGG + chr7_1:78703283-78703302 None:intergenic 30.0%
TGCTTTGTGAGAAATTAATC+AGG - chr7_1:78703283-78703302 Msa1041170:intron 30.0%
! ATTTTGTTCTGCTCACTTAT+TGG - chr7_1:78703372-78703391 Msa1041170:intron 30.0%
CAACTTGTCTATCAATTTAG+TGG - chr7_1:78703406-78703425 Msa1041170:intron 30.0%
CAAATTTGGAAAATTGTGAC+TGG + chr7_1:78703477-78703496 None:intergenic 30.0%
! TCTCTGAAAATGTTCACATT+TGG + chr7_1:78703663-78703682 None:intergenic 30.0%
ATATGCTGCTAGTTATGTTA+AGG - chr7_1:78703740-78703759 Msa1041170:intron 30.0%
TATGCTGCTAGTTATGTTAA+GGG - chr7_1:78703741-78703760 Msa1041170:intron 30.0%
!! CAGCTTATGATGTTGATAAT+TGG - chr7_1:78703820-78703839 Msa1041170:intron 30.0%
! TACTATAGTACACTTTTCCT+GGG + chr7_1:78703971-78703990 None:intergenic 30.0%
ACTAGTAATTAAGCAGTTGA+TGG - chr7_1:78704128-78704147 Msa1041170:intron 30.0%
TGAAAGATCAATAGATAGAG+TGG - chr7_1:78704171-78704190 Msa1041170:intron 30.0%
!!! TTTGTTCATGTTTTTGGTAC+AGG + chr7_1:78704390-78704409 None:intergenic 30.0%
!! CTAATAAATTTTGACACACC+AGG + chr7_1:78704472-78704491 None:intergenic 30.0%
GTAACTGCCAACATAAATTT+AGG + chr7_1:78704544-78704563 None:intergenic 30.0%
AAATTTATGTTGGCAGTTAC+TGG - chr7_1:78704544-78704563 Msa1041170:intron 30.0%
AAAAGAAAACTTTCCTATGG+GGG + chr7_1:78704654-78704673 None:intergenic 30.0%
AATCATAATTTCACCTACCA+TGG - chr7_1:78705062-78705081 Msa1041170:intron 30.0%
! TGACTTTTCACATGCAAAAA+TGG + chr7_1:78705181-78705200 None:intergenic 30.0%
!!! GAGTTTTTTACAGAACAACA+TGG + chr7_1:78705363-78705382 None:intergenic 30.0%
AAACTCATAAGAACAACACT+AGG - chr7_1:78705377-78705396 Msa1041170:CDS 30.0%
TGGCTATTGTGTAACAAAAA+AGG + chr7_1:78705501-78705520 None:intergenic 30.0%
AAAAGTTTCAAACCATTACC+AGG - chr7_1:78705524-78705543 Msa1041170:CDS 30.0%
GTTATTAAACTTTCCCATCA+TGG - chr7_1:78705593-78705612 Msa1041170:CDS 30.0%
TTATTGCACTTACATCAAGT+TGG - chr7_1:78705753-78705772 Msa1041170:intron 30.0%
GGTAAGCAAAATTACTATGT+AGG - chr7_1:78705785-78705804 Msa1041170:intron 30.0%
AAATTGCAGTGTTTGTGAAT+TGG - chr7_1:78705974-78705993 Msa1041170:intron 30.0%
AATTGCAGTGTTTGTGAATT+GGG - chr7_1:78705975-78705994 Msa1041170:intron 30.0%
TGGGAGAAACATAACATTAA+TGG - chr7_1:78705994-78706013 Msa1041170:intron 30.0%
GGGAGAAACATAACATTAAT+GGG - chr7_1:78705995-78706014 Msa1041170:intron 30.0%
ATAACATTAATGGGAGAAAG+CGG - chr7_1:78706004-78706023 Msa1041170:intron 30.0%
GCTCTTCAACTGAATTAAAA+TGG - chr7_1:78706063-78706082 Msa1041170:intron 30.0%
! GGCATCCATATTTCTATATA+TGG + chr7_1:78706133-78706152 None:intergenic 30.0%
ATGCTCATAGACTATAACAT+AGG + chr7_1:78706199-78706218 None:intergenic 30.0%
TATGTTATAGTCTATGAGCA+TGG - chr7_1:78706198-78706217 Msa1041170:intron 30.0%
ATGTTATAGTCTATGAGCAT+GGG - chr7_1:78706199-78706218 Msa1041170:intron 30.0%
ACACATTTGATGTACCATTT+AGG - chr7_1:78706279-78706298 Msa1041170:intron 30.0%
TGTTCTTACAATCAAGTGAA+TGG - chr7_1:78706338-78706357 Msa1041170:intron 30.0%
GTTCTTACAATCAAGTGAAT+GGG - chr7_1:78706339-78706358 Msa1041170:intron 30.0%
TTCTTACAATCAAGTGAATG+GGG - chr7_1:78706340-78706359 Msa1041170:intron 30.0%
!! ACTGTTTTCTTTAAGAGGTT+TGG + chr7_1:78706383-78706402 None:intergenic 30.0%
! TCATCTCTTTTGCTTTACTT+GGG - chr7_1:78706501-78706520 Msa1041170:intron 30.0%
TGATGAATGTGATGACAAAT+TGG - chr7_1:78706692-78706711 Msa1041170:intron 30.0%
GATGAATGTGATGACAAATT+GGG - chr7_1:78706693-78706712 Msa1041170:intron 30.0%
TTCAGCAAATCAATGATTGT+TGG - chr7_1:78706766-78706785 Msa1041170:intron 30.0%
TAAAAATGATGTTGCAGGTT+TGG - chr7_1:78706972-78706991 Msa1041170:intron 30.0%
ATTGTGCTTCTCAAAAACAA+TGG - chr7_1:78707222-78707241 Msa1041170:intron 30.0%
!! GTTTTTATAGGTATTGCATG+TGG - chr7_1:78707534-78707553 Msa1041170:intron 30.0%
TATCTTCCTATTCCTTGTAA+GGG + chr7_1:78707570-78707589 None:intergenic 30.0%
ATATCTTCCTATTCCTTGTA+AGG + chr7_1:78707571-78707590 None:intergenic 30.0%
! TCAACAAGATCTTGTTTCAA+AGG - chr7_1:78707764-78707783 Msa1041170:intron 30.0%
GACATCAAAACCAAAATAGT+TGG + chr7_1:78707810-78707829 None:intergenic 30.0%
!!! ACTATTTTGGTTTTGATGTC+TGG - chr7_1:78707810-78707829 Msa1041170:intron 30.0%
! GCAATTGCTGACATTTTATT+TGG - chr7_1:78707921-78707940 Msa1041170:intron 30.0%
GTTTATAGGCTATTTGCAAT+TGG + chr7_1:78707996-78708015 None:intergenic 30.0%
!!! AGTTTTTTAGGTACTCTTGT+GGG + chr7_1:78708080-78708099 None:intergenic 30.0%
!!! AAGTTTTTTAGGTACTCTTG+TGG + chr7_1:78708081-78708100 None:intergenic 30.0%
!! ACAAGAGTACCTAAAAAACT+TGG - chr7_1:78708080-78708099 Msa1041170:intron 30.0%
AGAATCTATATGTTCTTCCT+GGG + chr7_1:78708146-78708165 None:intergenic 30.0%
TAGAATCTATATGTTCTTCC+TGG + chr7_1:78708147-78708166 None:intergenic 30.0%
TATGTTAATCCATGTCCAAA+TGG + chr7_1:78708189-78708208 None:intergenic 30.0%
! ATTTTTGACATCAACGTGAA+GGG + chr7_1:78708352-78708371 None:intergenic 30.0%
!! CTTAGTGTAGTTGATAAATC+TGG - chr7_1:78708534-78708553 Msa1041170:intron 30.0%
!! TAGTTGATAAATCTGGGATT+AGG - chr7_1:78708541-78708560 Msa1041170:intron 30.0%
CTAAACAAACCAGAAAGAAA+TGG + chr7_1:78708830-78708849 None:intergenic 30.0%
!! CATTTCTTTCTGGTTTGTTT+AGG - chr7_1:78708828-78708847 Msa1041170:CDS 30.0%
! TTGAATACTATGATGGCTTT+TGG - chr7_1:78708894-78708913 Msa1041170:CDS 30.0%
! TGAGAATGTGGGAAACATTT+TGG + chr7_1:78700201-78700220 None:intergenic 35.0%
GCAAGTTTCACATTGCAAAA+TGG + chr7_1:78700329-78700348 None:intergenic 35.0%
TCTGTTAGTGAATAATGCTC+CGG - chr7_1:78700406-78700425 Msa1041170:three_prime_UTR 35.0%
!! AGAAGCATTAAAAGAAGCAG+CGG + chr7_1:78700564-78700583 None:intergenic 35.0%
! TTTTAATGCTTCTTTGTGGG+AGG - chr7_1:78700571-78700590 Msa1041170:CDS 35.0%
TTGTAAGTAGGAAGCTTCTA+GGG + chr7_1:78701055-78701074 None:intergenic 35.0%
TTTGTAAGTAGGAAGCTTCT+AGG + chr7_1:78701056-78701075 None:intergenic 35.0%
! TCAATGATTTGGACCAATAG+TGG + chr7_1:78701314-78701333 None:intergenic 35.0%
ACAAATTGTACCAACTCAGT+CGG + chr7_1:78701362-78701381 None:intergenic 35.0%
ATCGGAAACTACAAGATTAG+TGG - chr7_1:78701477-78701496 Msa1041170:CDS 35.0%
AAACTACAAGATTAGTGGCA+AGG - chr7_1:78701482-78701501 Msa1041170:CDS 35.0%
!! CACCATTTTTATGAGCTTGA+CGG + chr7_1:78701518-78701537 None:intergenic 35.0%
TTGAGATGTGTAGTTGAGTT+TGG - chr7_1:78701817-78701836 Msa1041170:intron 35.0%
TGAGATGTGTAGTTGAGTTT+GGG - chr7_1:78701818-78701837 Msa1041170:intron 35.0%
CTATTCTCAGAAATCAGATC+TGG - chr7_1:78701859-78701878 Msa1041170:intron 35.0%
ATGATGTGGACCAATAATTG+AGG - chr7_1:78702016-78702035 Msa1041170:CDS 35.0%
TGATGTGGACCAATAATTGA+GGG - chr7_1:78702017-78702036 Msa1041170:CDS 35.0%
TCAAACACTCCCTCAATTAT+TGG + chr7_1:78702029-78702048 None:intergenic 35.0%
ATTCTAGATGAGGAATGCTA+AGG + chr7_1:78702074-78702093 None:intergenic 35.0%
!! CTGTTCAGTTGATAAGATAG+TGG - chr7_1:78702175-78702194 Msa1041170:CDS 35.0%
!! CAGTTGATAAGATAGTGGTA+TGG - chr7_1:78702180-78702199 Msa1041170:CDS 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr7_1:78702258-78702277 None:intergenic 35.0%
! GCTTGCTAGCAATAATAATC+AGG - chr7_1:78702641-78702660 Msa1041170:CDS 35.0%
CCATGATCACAAAAATTAGG+CGG + chr7_1:78702761-78702780 None:intergenic 35.0%
! CGCCTAATTTTTGTGATCAT+GGG - chr7_1:78702759-78702778 Msa1041170:intron 35.0%
AGCCCATGATCACAAAAATT+AGG + chr7_1:78702764-78702783 None:intergenic 35.0%
! AATTTTTGTGATCATGGGCT+TGG - chr7_1:78702764-78702783 Msa1041170:intron 35.0%
! ATTTTTGTGATCATGGGCTT+GGG - chr7_1:78702765-78702784 Msa1041170:intron 35.0%
TTTCAATACCACATTCACGA+TGG - chr7_1:78703156-78703175 Msa1041170:intron 35.0%
!! ACTTTGAAATGTCTATAGGG+AGG - chr7_1:78703181-78703200 Msa1041170:intron 35.0%
ACATATCCATTACATGCACT+TGG - chr7_1:78703245-78703264 Msa1041170:intron 35.0%
TGAACCCAATCCAATAATGA+TGG - chr7_1:78703325-78703344 Msa1041170:intron 35.0%
GAACCCAATCCAATAATGAT+GGG - chr7_1:78703326-78703345 Msa1041170:intron 35.0%
GAACCCATCATTATTGGATT+GGG + chr7_1:78703332-78703351 None:intergenic 35.0%
AGATACGAACCCATCATTAT+TGG + chr7_1:78703338-78703357 None:intergenic 35.0%
! CTTGTTGGTTAGCTCAAATT+TGG + chr7_1:78703491-78703510 None:intergenic 35.0%
GTAAAATATTCAACGAGGGT+TGG - chr7_1:78703564-78703583 Msa1041170:intron 35.0%
ATAACTAGCAGCATATCTAC+CGG + chr7_1:78703736-78703755 None:intergenic 35.0%
ATGCTGCTAGTTATGTTAAG+GGG - chr7_1:78703742-78703761 Msa1041170:intron 35.0%
!! TGTTGATAATTGGAATGGTG+TGG - chr7_1:78703830-78703849 Msa1041170:intron 35.0%
! GTACTATAGTACACTTTTCC+TGG + chr7_1:78703972-78703991 None:intergenic 35.0%
!! ATAAACTTTTTGGTCAGGCA+GGG + chr7_1:78704101-78704120 None:intergenic 35.0%
!! AATAAACTTTTTGGTCAGGC+AGG + chr7_1:78704102-78704121 None:intergenic 35.0%
AGAAAAAAGATGCAGCAAAG+AGG + chr7_1:78704224-78704243 None:intergenic 35.0%
!! ATGCGTTGATGATTATATCC+TGG - chr7_1:78704451-78704470 Msa1041170:intron 35.0%
!! AAAAGTACTACTCCAAAAGC+AGG + chr7_1:78704578-78704597 None:intergenic 35.0%
AAAATAGGTGGCATTTAGTC+TGG - chr7_1:78704612-78704631 Msa1041170:intron 35.0%
AAATAGGTGGCATTTAGTCT+GGG - chr7_1:78704613-78704632 Msa1041170:intron 35.0%
TCTACAAAGGATTTCTTCAG+AGG + chr7_1:78704779-78704798 None:intergenic 35.0%
!!! ATCAACAACTTGGTTTTAGC+AGG - chr7_1:78705089-78705108 Msa1041170:intron 35.0%
!!! TCAACAACTTGGTTTTAGCA+GGG - chr7_1:78705090-78705109 Msa1041170:intron 35.0%
GTAAAGGAAAAGAACAAGAG+AGG + chr7_1:78705235-78705254 None:intergenic 35.0%
AAAAAAGGTGACCCTACATA+TGG + chr7_1:78705486-78705505 None:intergenic 35.0%
TTAAGAGTGGGGTTTAGTAT+GGG + chr7_1:78705635-78705654 None:intergenic 35.0%
TTTAAGAGTGGGGTTTAGTA+TGG + chr7_1:78705636-78705655 None:intergenic 35.0%
!! ACTTACATCAAGTTGGAGAT+TGG - chr7_1:78705760-78705779 Msa1041170:intron 35.0%
CTCATAGACTATAACATAGG+TGG + chr7_1:78706196-78706215 None:intergenic 35.0%
! CACGAACTGTTTTCTTTAAG+AGG + chr7_1:78706388-78706407 None:intergenic 35.0%
CTCTTAAAGAAAACAGTTCG+TGG - chr7_1:78706386-78706405 Msa1041170:intron 35.0%
TACAATTATCACATCCACGT+TGG - chr7_1:78706442-78706461 Msa1041170:intron 35.0%
! GTCATCTCTTTTGCTTTACT+TGG - chr7_1:78706500-78706519 Msa1041170:intron 35.0%
!! TGCTTTACTTGGGTTGATTT+AGG - chr7_1:78706511-78706530 Msa1041170:intron 35.0%
ATGTGATGACAAATTGGGAT+TGG - chr7_1:78706698-78706717 Msa1041170:intron 35.0%
!! CATTGATTTGCTGAATGTGT+AGG + chr7_1:78706761-78706780 None:intergenic 35.0%
GTTCGTTGGATCTATATTAG+AGG + chr7_1:78706857-78706876 None:intergenic 35.0%
ATAAGGATATCAGTGTTCGT+TGG + chr7_1:78706871-78706890 None:intergenic 35.0%
AGCAGATGTGAATAATGCTT+TGG - chr7_1:78707062-78707081 Msa1041170:intron 35.0%
TGCTTTGGTGAATACATTGA+AGG - chr7_1:78707077-78707096 Msa1041170:intron 35.0%
! TTGAAGGTGCAAATGAGATT+AGG - chr7_1:78707093-78707112 Msa1041170:intron 35.0%
! TGAAGGTGCAAATGAGATTA+GGG - chr7_1:78707094-78707113 Msa1041170:intron 35.0%
ATGAGATTAGGGATGTTTGA+TGG - chr7_1:78707105-78707124 Msa1041170:intron 35.0%
CTGGTTTACACACATCTTTA+GGG + chr7_1:78707164-78707183 None:intergenic 35.0%
ATCTTCCTATTCCTTGTAAG+GGG + chr7_1:78707569-78707588 None:intergenic 35.0%
AGATGCAACTATTCTAGTGA+TGG - chr7_1:78707680-78707699 Msa1041170:intron 35.0%
GATGCAACTATTCTAGTGAT+GGG - chr7_1:78707681-78707700 Msa1041170:intron 35.0%
CAGTTTCAGCTTCTATAGAT+TGG + chr7_1:78707713-78707732 None:intergenic 35.0%
TAGAAGCTGAAACTGTTGAT+AGG - chr7_1:78707718-78707737 Msa1041170:intron 35.0%
! ACAAGATCTTGTTTCAAAGG+TGG - chr7_1:78707767-78707786 Msa1041170:intron 35.0%
! ATCAAAGGGACCAACTATTT+TGG - chr7_1:78707797-78707816 Msa1041170:intron 35.0%
!!! ATTTTGGTTTTGATGTCTGG+TGG - chr7_1:78707813-78707832 Msa1041170:intron 35.0%
!!! TTTTGGTTTTGATGTCTGGT+GGG - chr7_1:78707814-78707833 Msa1041170:intron 35.0%
TTTGCAAAAGTAATGTCCAC+AGG + chr7_1:78707840-78707859 None:intergenic 35.0%
!! GCAAGTTTTATGACAAACCT+GGG + chr7_1:78707956-78707975 None:intergenic 35.0%
!! TGCAAGTTTTATGACAAACC+TGG + chr7_1:78707957-78707976 None:intergenic 35.0%
!! CACTATTGTGTTTTGCTATC+AGG - chr7_1:78708030-78708049 Msa1041170:intron 35.0%
!! TATTGTGTTTTGCTATCAGG+AGG - chr7_1:78708033-78708052 Msa1041170:intron 35.0%
!!! TTGTCATGGCCAAGTTTTTT+AGG + chr7_1:78708092-78708111 None:intergenic 35.0%
AAACTTGGCCATGACAAATA+TGG - chr7_1:78708095-78708114 Msa1041170:intron 35.0%
TCTCATTGCCATATTTGTCA+TGG + chr7_1:78708106-78708125 None:intergenic 35.0%
! CATTTTTGACATCAACGTGA+AGG + chr7_1:78708353-78708372 None:intergenic 35.0%
TCACGTTGATGTCAAAAATG+TGG - chr7_1:78708353-78708372 Msa1041170:intron 35.0%
CACGTTGATGTCAAAAATGT+GGG - chr7_1:78708354-78708373 Msa1041170:intron 35.0%
AAAAATGTGGGATCTAGAGA+TGG - chr7_1:78708366-78708385 Msa1041170:intron 35.0%
GAACTTTCTCAAAAGCAACT+AGG + chr7_1:78708458-78708477 None:intergenic 35.0%
!! CATTGGTGATGTTAAGCATT+CGG - chr7_1:78708593-78708612 Msa1041170:intron 35.0%
TCTTGAAGAGAAGACATGTT+AGG - chr7_1:78708710-78708729 Msa1041170:CDS 35.0%
!! TTTTGGGAGAGATGAGATTA+AGG - chr7_1:78708780-78708799 Msa1041170:CDS 35.0%
TGTATTCTCCCATTTCTTTC+TGG - chr7_1:78708818-78708837 Msa1041170:CDS 35.0%
AGATGTGAGAGTGAGAATGT+GGG + chr7_1:78700212-78700231 None:intergenic 40.0%
! TAGCTTTTCATTCCGACTCT+AGG + chr7_1:78700437-78700456 None:intergenic 40.0%
TCGGAATGAAAAGCTATGAG+TGG - chr7_1:78700441-78700460 Msa1041170:three_prime_UTR 40.0%
GAATGAAAAGCTATGAGTGG+TGG - chr7_1:78700444-78700463 Msa1041170:three_prime_UTR 40.0%
ACTTCATGGTGTTTCAAACG+TGG - chr7_1:78700475-78700494 Msa1041170:three_prime_UTR 40.0%
CTTCATGGTGTTTCAAACGT+GGG - chr7_1:78700476-78700495 Msa1041170:three_prime_UTR 40.0%
AAACCACCAAATCTAGTACC+AGG + chr7_1:78700503-78700522 None:intergenic 40.0%
!! AGATTTGGTGGTTTGTTTCC+TGG - chr7_1:78700509-78700528 Msa1041170:three_prime_UTR 40.0%
! ATAGTGGAGTGAGTGTCAAA+GGG + chr7_1:78701298-78701317 None:intergenic 40.0%
! AATAGTGGAGTGAGTGTCAA+AGG + chr7_1:78701299-78701318 None:intergenic 40.0%
TTTGACACTCACTCCACTAT+TGG - chr7_1:78701298-78701317 Msa1041170:CDS 40.0%
TCCAAAGCCACAATAGCAAT+CGG - chr7_1:78701459-78701478 Msa1041170:CDS 40.0%
! GTAGTTTCCGATTGCTATTG+TGG + chr7_1:78701469-78701488 None:intergenic 40.0%
CTCCGTCAAGCTCATAAAAA+TGG - chr7_1:78701513-78701532 Msa1041170:CDS 40.0%
CGTCAAGCTCATAAAAATGG+TGG - chr7_1:78701516-78701535 Msa1041170:CDS 40.0%
TCATCGCATTCACAATGCAA+AGG + chr7_1:78701566-78701585 None:intergenic 40.0%
TTGCATTGTGAATGCGATGA+AGG - chr7_1:78701566-78701585 Msa1041170:CDS 40.0%
AGGGAGTAGTAGAATGTGTT+TGG - chr7_1:78701790-78701809 Msa1041170:intron 40.0%
TGAATGTAAACCAGCACAAC+CGG - chr7_1:78701965-78701984 Msa1041170:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr7_1:78702257-78702276 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr7_1:78702453-78702472 Msa1041170:intron 40.0%
! TACATTTTGCACGAGAGAGA+TGG - chr7_1:78702708-78702727 Msa1041170:intron 40.0%
! CCGCCTAATTTTTGTGATCA+TGG - chr7_1:78702758-78702777 Msa1041170:intron 40.0%
! CAAAGTATCCATCGTGAATG+TGG + chr7_1:78703167-78703186 None:intergenic 40.0%
ATCCATTACATGCACTTGGA+TGG - chr7_1:78703249-78703268 Msa1041170:intron 40.0%
TCTCACAAAGCAAGGGATAA+AGG + chr7_1:78703275-78703294 None:intergenic 40.0%
CGAACCCATCATTATTGGAT+TGG + chr7_1:78703333-78703352 None:intergenic 40.0%
TGCAAGTTGCTCAAGAAAGT+GGG + chr7_1:78703446-78703465 None:intergenic 40.0%
! TGAACATTTTCAGAGACCCT+AGG - chr7_1:78703667-78703686 Msa1041170:intron 40.0%
TAGTTATGTTAAGGGGCTAC+AGG - chr7_1:78703749-78703768 Msa1041170:intron 40.0%
AGTTATGTTAAGGGGCTACA+GGG - chr7_1:78703750-78703769 Msa1041170:intron 40.0%
! AACAGACGGTAACAAGTTGA+AGG - chr7_1:78703773-78703792 Msa1041170:intron 40.0%
TCGCTTTCACTTTAATGCAC+TGG - chr7_1:78703854-78703873 Msa1041170:intron 40.0%
! AGTACACTTTTCCTGGGAAA+GGG + chr7_1:78703965-78703984 None:intergenic 40.0%
! TAGTACACTTTTCCTGGGAA+AGG + chr7_1:78703966-78703985 None:intergenic 40.0%
AATAGATAGAGTGGCCAAGT+TGG - chr7_1:78704180-78704199 Msa1041170:intron 40.0%
ACAGATCCTACAAACCAACT+TGG + chr7_1:78704197-78704216 None:intergenic 40.0%
!! AAGTTGGTTTGTAGGATCTG+TGG - chr7_1:78704196-78704215 Msa1041170:intron 40.0%
!! AGTTGGTTTGTAGGATCTGT+GGG - chr7_1:78704197-78704216 Msa1041170:intron 40.0%
ATAACTATGACTCAGCTGAG+TGG - chr7_1:78704268-78704287 Msa1041170:intron 40.0%
!! TCTTTCCTGCTTTTGCTTAG+AGG - chr7_1:78704316-78704335 Msa1041170:intron 40.0%
TTGTACCTCTAAGCAAAAGC+AGG + chr7_1:78704324-78704343 None:intergenic 40.0%
AGAAAACTTCTTTCCCCCAT+AGG - chr7_1:78704638-78704657 Msa1041170:intron 40.0%
GGATTTCTTCAGAGGAAAGA+GGG + chr7_1:78704771-78704790 None:intergenic 40.0%
AGGATTTCTTCAGAGGAAAG+AGG + chr7_1:78704772-78704791 None:intergenic 40.0%
! AAGAAATCAGCAAAAGCACG+AGG + chr7_1:78704947-78704966 None:intergenic 40.0%
CATAATTTCACCTACCATGG+AGG - chr7_1:78705065-78705084 Msa1041170:intron 40.0%
ATGTGAAAAGTCAGTGAGAG+AGG - chr7_1:78705188-78705207 Msa1041170:intron 40.0%
TTGGAGGTTTCATGTGACAA+TGG - chr7_1:78705291-78705310 Msa1041170:intron 40.0%
CATTACCAGGTAACAGATCT+GGG - chr7_1:78705537-78705556 Msa1041170:CDS 40.0%
GGAAACTTCTTTCCCATGAT+GGG + chr7_1:78705609-78705628 None:intergenic 40.0%
AGGAAACTTCTTTCCCATGA+TGG + chr7_1:78705610-78705629 None:intergenic 40.0%
!! ACATCAAGTTGGAGATTGGT+TGG - chr7_1:78705764-78705783 Msa1041170:intron 40.0%
GTTTAAACTCCCACATGTGT+GGG + chr7_1:78705825-78705844 None:intergenic 40.0%
! ACCATTTAGGATGTGTGTGA+AGG - chr7_1:78706292-78706311 Msa1041170:intron 40.0%
TCCTTCACACACATCCTAAA+TGG + chr7_1:78706296-78706315 None:intergenic 40.0%
! TTTAGGATGTGTGTGAAGGA+AGG - chr7_1:78706296-78706315 Msa1041170:intron 40.0%
AGAAAACAGTTCGTGGAGTA+TGG - chr7_1:78706393-78706412 Msa1041170:intron 40.0%
GAAAACAGTTCGTGGAGTAT+GGG - chr7_1:78706394-78706413 Msa1041170:intron 40.0%
AAAACAGTTCGTGGAGTATG+GGG - chr7_1:78706395-78706414 Msa1041170:intron 40.0%
GTATCTGATTGTGACTCTGT+CGG - chr7_1:78706540-78706559 Msa1041170:intron 40.0%
TATCTGATTGTGACTCTGTC+GGG - chr7_1:78706541-78706560 Msa1041170:intron 40.0%
ATGTGTAGGACTGTAAAGAC+AGG + chr7_1:78706747-78706766 None:intergenic 40.0%
TGATGTTGCAGGTTTGGATT+TGG - chr7_1:78706978-78706997 Msa1041170:intron 40.0%
CAGGTTTGGATTTGGATTGT+GGG - chr7_1:78706986-78707005 Msa1041170:intron 40.0%
ACACAGGATGCAGTGAAAAA+AGG - chr7_1:78707027-78707046 Msa1041170:intron 40.0%
GCTCAAGCTTATGGAAGATT+AGG - chr7_1:78707138-78707157 Msa1041170:intron 40.0%
! GCTGGTTTACACACATCTTT+AGG + chr7_1:78707165-78707184 None:intergenic 40.0%
AATCATGGTAACCGTGACAT+CGG + chr7_1:78707307-78707326 None:intergenic 40.0%
ACCATGATTGGAAACTATGC+TGG - chr7_1:78707318-78707337 Msa1041170:intron 40.0%
ACCAGCATAGTTTCCAATCA+TGG + chr7_1:78707322-78707341 None:intergenic 40.0%
AATTGGGCCTGGAAGAATTT+GGG + chr7_1:78707348-78707367 None:intergenic 40.0%
TAATTGGGCCTGGAAGAATT+TGG + chr7_1:78707349-78707368 None:intergenic 40.0%
TGCTAAGACTATTCATCAGC+TGG - chr7_1:78707590-78707609 Msa1041170:intron 40.0%
GCTAAGACTATTCATCAGCT+GGG - chr7_1:78707591-78707610 Msa1041170:intron 40.0%
!! AACTATTCTAGTGATGGGCT+TGG - chr7_1:78707686-78707705 Msa1041170:intron 40.0%
ACAAGATCTTGTTGATGTCC+AGG + chr7_1:78707759-78707778 None:intergenic 40.0%
ACAATATGCCAGCAACTTTG+GGG + chr7_1:78707869-78707888 None:intergenic 40.0%
CACAATATGCCAGCAACTTT+GGG + chr7_1:78707870-78707889 None:intergenic 40.0%
CAAAGTTGCTGGCATATTGT+GGG - chr7_1:78707869-78707888 Msa1041170:intron 40.0%
! TTATTTGGAACTGCTAACCC+AGG - chr7_1:78707936-78707955 Msa1041170:intron 40.0%
CAATGAGACCAAGCAAAGTA+GGG - chr7_1:78708118-78708137 Msa1041170:intron 40.0%
ACCTAATGGAGGTAACCATT+GGG - chr7_1:78708419-78708438 Msa1041170:intron 40.0%
! AAAGCAACTAGGCTTTTCTG+CGG + chr7_1:78708447-78708466 None:intergenic 40.0%
TCTAACCCTTTGCTTAGTCT+TGG + chr7_1:78708490-78708509 None:intergenic 40.0%
TGGGATTAGGAGAATTCCAA+TGG - chr7_1:78708554-78708573 Msa1041170:intron 40.0%
GGGATTAGGAGAATTCCAAT+GGG - chr7_1:78708555-78708574 Msa1041170:intron 40.0%
TGAAGACTATGTTCTCCCAT+TGG + chr7_1:78708573-78708592 None:intergenic 40.0%
GGAGAACATAGTCTTCACAT+TGG - chr7_1:78708576-78708595 Msa1041170:intron 40.0%
GAGATGTGAGAGTGAGAATG+TGG + chr7_1:78700213-78700232 None:intergenic 45.0%
TGCAATACCAGAGAGAGTGA+AGG - chr7_1:78700346-78700365 Msa1041170:three_prime_UTR 45.0%
ATGAGATCCTTCACTCTCTC+TGG + chr7_1:78700356-78700375 None:intergenic 45.0%
GAGAGAGTGAAGGATCTCAT+TGG - chr7_1:78700356-78700375 Msa1041170:three_prime_UTR 45.0%
GTTAGTGAATAATGCTCCGG+CGG - chr7_1:78700409-78700428 Msa1041170:three_prime_UTR 45.0%
GAAAAGCTATGAGTGGTGGT+CGG - chr7_1:78700448-78700467 Msa1041170:three_prime_UTR 45.0%
TGAGGAAAACTAGTAGCACC+AGG + chr7_1:78700530-78700549 None:intergenic 45.0%
! TCCGATTGCTATTGTGGCTT+TGG + chr7_1:78701463-78701482 None:intergenic 45.0%
ATGTGTAGTTGAGTTTGGGC+AGG - chr7_1:78701822-78701841 Msa1041170:intron 45.0%
GATCTGGGCACAAAGAAAGA+AGG - chr7_1:78701875-78701894 Msa1041170:intron 45.0%
! TTTGAGAGAGAGTGTGAGAG+AGG - chr7_1:78702044-78702063 Msa1041170:CDS 45.0%
AATAATCAGGGCGTGTGAAC+TGG - chr7_1:78702654-78702673 Msa1041170:CDS 45.0%
ATAATCAGGGCGTGTGAACT+GGG - chr7_1:78702655-78702674 Msa1041170:CDS 45.0%
CACACTTGTGCTCACACTTA+TGG - chr7_1:78702678-78702697 Msa1041170:intron 45.0%
AAGAAAGTGGGGCAGTGAAA+GGG + chr7_1:78703434-78703453 None:intergenic 45.0%
GCAAGTTGCTCAAGAAAGTG+GGG + chr7_1:78703445-78703464 None:intergenic 45.0%
GTGCAAGTTGCTCAAGAAAG+TGG + chr7_1:78703447-78703466 None:intergenic 45.0%
! TGGTAATGTGCAGGTTGTCT+CGG - chr7_1:78703584-78703603 Msa1041170:intron 45.0%
GAAGCAAGGGCAATGTACAA+TGG - chr7_1:78703609-78703628 Msa1041170:intron 45.0%
GAGCAGCAGGGTTAACTTAT+TGG - chr7_1:78703634-78703653 Msa1041170:intron 45.0%
! ACATTTTCAGAGACCCTAGG+TGG - chr7_1:78703670-78703689 Msa1041170:intron 45.0%
! CATTTTCAGAGACCCTAGGT+GGG - chr7_1:78703671-78703690 Msa1041170:intron 45.0%
! ATTTTCAGAGACCCTAGGTG+GGG - chr7_1:78703672-78703691 Msa1041170:intron 45.0%
! AGACGGTAACAAGTTGAAGG+TGG - chr7_1:78703776-78703795 Msa1041170:intron 45.0%
TATAGTACCATCCCTTTCCC+AGG - chr7_1:78703951-78703970 Msa1041170:intron 45.0%
ACTACTCCAAAAGCAGGTGT+CGG + chr7_1:78704572-78704591 None:intergenic 45.0%
TTTCTTCAGAGGAAAGAGGG+AGG + chr7_1:78704768-78704787 None:intergenic 45.0%
!! GTTGTTGATTCCTCCATGGT+AGG + chr7_1:78705078-78705097 None:intergenic 45.0%
!! CCAAGTTGTTGATTCCTCCA+TGG + chr7_1:78705082-78705101 None:intergenic 45.0%
CCATGGAGGAATCAACAACT+TGG - chr7_1:78705079-78705098 Msa1041170:intron 45.0%
CCAGATCTGTTACCTGGTAA+TGG + chr7_1:78705539-78705558 None:intergenic 45.0%
CCATTACCAGGTAACAGATC+TGG - chr7_1:78705536-78705555 Msa1041170:CDS 45.0%
AGTGGGGTTTAGTATGGGAA+AGG + chr7_1:78705630-78705649 None:intergenic 45.0%
TCAAATGTGTCCCACACATG+TGG - chr7_1:78705812-78705831 Msa1041170:intron 45.0%
CAAATGTGTCCCACACATGT+GGG - chr7_1:78705813-78705832 Msa1041170:intron 45.0%
CGTTTAAACTCCCACATGTG+TGG + chr7_1:78705826-78705845 None:intergenic 45.0%
GCGGGGTGACAATTCAATTA+TGG - chr7_1:78706041-78706060 Msa1041170:intron 45.0%
GGTTTGGATCAGCACATGTA+GGG + chr7_1:78706367-78706386 None:intergenic 45.0%
AGGTTTGGATCAGCACATGT+AGG + chr7_1:78706368-78706387 None:intergenic 45.0%
GATAAGGCAATTGTCCAACG+TGG + chr7_1:78706459-78706478 None:intergenic 45.0%
ATCTGATTGTGACTCTGTCG+GGG - chr7_1:78706542-78706561 Msa1041170:intron 45.0%
! ATGGAACTAGCCTGCTTTGA+TGG + chr7_1:78706622-78706641 None:intergenic 45.0%
GGTCACACATTCGCACAATA+AGG + chr7_1:78706888-78706907 None:intergenic 45.0%
GCAGGTTTGGATTTGGATTG+TGG - chr7_1:78706985-78707004 Msa1041170:intron 45.0%
CTTCCATAAGCTTGAGCTGA+TGG + chr7_1:78707135-78707154 None:intergenic 45.0%
TCCTTGTCTAGCAGCTTCAA+GGG + chr7_1:78707202-78707221 None:intergenic 45.0%
TTCCTTGTCTAGCAGCTTCA+AGG + chr7_1:78707203-78707222 None:intergenic 45.0%
GTAACCGTGACATCGGAATT+GGG + chr7_1:78707300-78707319 None:intergenic 45.0%
GATGTCACGGTTACCATGAT+TGG - chr7_1:78707306-78707325 Msa1041170:intron 45.0%
TGGTAAGCCCAAATTCTTCC+AGG - chr7_1:78707338-78707357 Msa1041170:intron 45.0%
CTTAGGCTTATAATTGGGCC+TGG + chr7_1:78707359-78707378 None:intergenic 45.0%
! GCTGAAACTGTTGATAGGAC+TGG - chr7_1:78707723-78707742 Msa1041170:intron 45.0%
AAGAATGACCCCAAAGTTGC+TGG - chr7_1:78707858-78707877 Msa1041170:intron 45.0%
CCACAATATGCCAGCAACTT+TGG + chr7_1:78707871-78707890 None:intergenic 45.0%
CCAAAGTTGCTGGCATATTG+TGG - chr7_1:78707868-78707887 Msa1041170:intron 45.0%
GCAATGAGACCAAGCAAAGT+AGG - chr7_1:78708117-78708136 Msa1041170:intron 45.0%
TGTCCAAATGGATACACGAC+TGG + chr7_1:78708177-78708196 None:intergenic 45.0%
GTCGTGTATCCATTTGGACA+TGG - chr7_1:78708177-78708196 Msa1041170:intron 45.0%
ATTATCTAGTGCACCCACAG+TGG - chr7_1:78708227-78708246 Msa1041170:intron 45.0%
AGAGTGACACATGCAAGATG+TGG - chr7_1:78708312-78708331 Msa1041170:intron 45.0%
CAATGGTTACCTCCATTAGG+TGG + chr7_1:78708420-78708439 None:intergenic 45.0%
CACCTAATGGAGGTAACCAT+TGG - chr7_1:78708418-78708437 Msa1041170:intron 45.0%
ACCCAATGGTTACCTCCATT+AGG + chr7_1:78708423-78708442 None:intergenic 45.0%
TTCCTGCCAAGACTAAGCAA+AGG - chr7_1:78708481-78708500 Msa1041170:intron 45.0%
TCCTGCCAAGACTAAGCAAA+GGG - chr7_1:78708482-78708501 Msa1041170:intron 45.0%
!! TCACTTCAAGCAGAAGCACT+TGG - chr7_1:78708618-78708637 Msa1041170:CDS 45.0%
!! CACTTCAAGCAGAAGCACTT+GGG - chr7_1:78708619-78708638 Msa1041170:CDS 45.0%
!! TATAATTATAATTAAATGAA+TGG + chr7_1:78702734-78702753 None:intergenic 5.0%
!!! ATTTAATTAATTTGTATTTT+GGG - chr7_1:78705323-78705342 Msa1041170:intron 5.0%
!! TTAAAAAAATATTAAATCAA+TGG - chr7_1:78705568-78705587 Msa1041170:CDS 5.0%
TTCGCGTGCAACGCAAAAGA+CGG - chr7_1:78700287-78700306 Msa1041170:three_prime_UTR 50.0%
GTGGGACCTGGTACTAGATT+TGG - chr7_1:78700494-78700513 Msa1041170:three_prime_UTR 50.0%
GGACCTGGTACTAGATTTGG+TGG - chr7_1:78700497-78700516 Msa1041170:three_prime_UTR 50.0%
GCAGCGGTTGTGATAACTTG+AGG + chr7_1:78700548-78700567 None:intergenic 50.0%
GCTTCTTTGTGGGAGGCTAT+TGG - chr7_1:78700578-78700597 Msa1041170:CDS 50.0%
CTTTGTGGGAGGCTATTGGA+CGG - chr7_1:78700582-78700601 Msa1041170:CDS 50.0%
TTTGTGGGAGGCTATTGGAC+GGG - chr7_1:78700583-78700602 Msa1041170:CDS 50.0%
TCAGTCGGTTGCCAATTGCA+AGG + chr7_1:78701347-78701366 None:intergenic 50.0%
CAATTGGCAACCGACTGAGT+TGG - chr7_1:78701349-78701368 Msa1041170:CDS 50.0%
GTAGTTGAGTTTGGGCAGGA+TGG - chr7_1:78701826-78701845 Msa1041170:intron 50.0%
AACCAGCACAACCGGTTATC+AGG - chr7_1:78701973-78701992 Msa1041170:CDS 50.0%
TACCTGATAACCGGTTGTGC+TGG + chr7_1:78701978-78701997 None:intergenic 50.0%
AATTGATACTCCCTCCGTCC+CGG - chr7_1:78702236-78702255 Msa1041170:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr7_1:78702253-78702272 None:intergenic 50.0%
TTGTGATCATGGGCTTGGGT+TGG - chr7_1:78702769-78702788 Msa1041170:intron 50.0%
TGTGATCATGGGCTTGGGTT+GGG - chr7_1:78702770-78702789 Msa1041170:intron 50.0%
GGCCATCCAAGTGCATGTAA+TGG + chr7_1:78703254-78703273 None:intergenic 50.0%
CAAGAAAGTGGGGCAGTGAA+AGG + chr7_1:78703435-78703454 None:intergenic 50.0%
!! AACGAGGGTTGGTAATGTGC+AGG - chr7_1:78703575-78703594 Msa1041170:intron 50.0%
GCAAGGGCAATGTACAATGG+AGG - chr7_1:78703612-78703631 Msa1041170:intron 50.0%
ATGTACAATGGAGGAGCAGC+AGG - chr7_1:78703621-78703640 Msa1041170:intron 50.0%
TGTACAATGGAGGAGCAGCA+GGG - chr7_1:78703622-78703641 Msa1041170:intron 50.0%
! CATATCTACCGGCTAGCACA+GGG + chr7_1:78703725-78703744 None:intergenic 50.0%
! CACTTTTCCTGGGAAAGGGA+TGG + chr7_1:78703961-78703980 None:intergenic 50.0%
!! GAGTGGCCAAGTTGGTTTGT+AGG - chr7_1:78704188-78704207 Msa1041170:intron 50.0%
TGGCAGCTGTCAATTGCAAC+AGG - chr7_1:78704677-78704696 Msa1041170:intron 50.0%
! AGCGGACCACACGATTTTTG+CGG - chr7_1:78706022-78706041 Msa1041170:intron 50.0%
GTGGAGTATGGGGTCTTGAT+GGG - chr7_1:78706405-78706424 Msa1041170:intron 50.0%
!! CTGGCGTTGATGCATAATGC+TGG + chr7_1:78706581-78706600 None:intergenic 50.0%
TTGGATTGTGGGCCTTTCCT+AGG - chr7_1:78706997-78707016 Msa1041170:intron 50.0%
TGTGTGTGCACTCCTAGGAA+AGG + chr7_1:78707012-78707031 None:intergenic 50.0%
! TTTCCTAGGAGTGCACACAC+AGG - chr7_1:78707011-78707030 Msa1041170:intron 50.0%
GAGCCATCAGCTCAAGCTTA+TGG - chr7_1:78707129-78707148 Msa1041170:intron 50.0%
ACCGAACTGTGGCTGTCATT+GGG - chr7_1:78707274-78707293 Msa1041170:intron 50.0%
GGTAACCGTGACATCGGAAT+TGG + chr7_1:78707301-78707320 None:intergenic 50.0%
GGATATACCAGCCCCTTACA+AGG - chr7_1:78707555-78707574 Msa1041170:intron 50.0%
ACCAGCCCCTTACAAGGAAT+AGG - chr7_1:78707561-78707580 Msa1041170:intron 50.0%
TCCTATTCCTTGTAAGGGGC+TGG + chr7_1:78707565-78707584 None:intergenic 50.0%
TAAACAATTTGGGCCTGCCC+TGG - chr7_1:78707641-78707660 Msa1041170:intron 50.0%
AAAGGTGGCAGCTGCATCAA+AGG - chr7_1:78707782-78707801 Msa1041170:intron 50.0%
AAGGTGGCAGCTGCATCAAA+GGG - chr7_1:78707783-78707802 Msa1041170:intron 50.0%
AGTTGCTGGCATATTGTGGG+CGG - chr7_1:78707872-78707891 Msa1041170:intron 50.0%
!! CATATTGTGGGCGGGTTATC+CGG - chr7_1:78707881-78707900 Msa1041170:intron 50.0%
!! ATATTGTGGGCGGGTTATCC+GGG - chr7_1:78707882-78707901 Msa1041170:intron 50.0%
TCTTGTGGGTACCATGTCAC+TGG + chr7_1:78708066-78708085 None:intergenic 50.0%
GGACCAGTCGTGTATCCATT+TGG - chr7_1:78708171-78708190 Msa1041170:intron 50.0%
GACATCAACGTGAAGGGCAA+TGG + chr7_1:78708346-78708365 None:intergenic 50.0%
GTGTTCTCTGCTCCACCTAA+TGG - chr7_1:78708405-78708424 Msa1041170:intron 50.0%
TTCTCTGCTCCACCTAATGG+AGG - chr7_1:78708408-78708427 Msa1041170:intron 50.0%
!! ACCCTTTGCTTAGTCTTGGC+AGG + chr7_1:78708486-78708505 None:intergenic 50.0%
GAGGAGGAGGAGGATGAAGA+GGG + chr7_1:78700240-78700259 None:intergenic 55.0%
GAATGAATCACGTGCGTCGC+AGG + chr7_1:78700270-78700289 None:intergenic 55.0%
! ATTCCGACTCTAGGAACCGC+CGG + chr7_1:78700428-78700447 None:intergenic 55.0%
AAGCTATGAGTGGTGGTCGG+AGG - chr7_1:78700451-78700470 Msa1041170:three_prime_UTR 55.0%
GGTGTTTCAAACGTGGGACC+TGG - chr7_1:78700482-78700501 Msa1041170:three_prime_UTR 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr7_1:78702249-78702268 None:intergenic 55.0%
AGGTTGTCTCGGACGAAGCA+AGG - chr7_1:78703595-78703614 Msa1041170:intron 55.0%
GGTTGTCTCGGACGAAGCAA+GGG - chr7_1:78703596-78703615 Msa1041170:intron 55.0%
! GCATATCTACCGGCTAGCAC+AGG + chr7_1:78703726-78703745 None:intergenic 55.0%
AAGGGGCTACAGGGAACAGA+CGG - chr7_1:78703759-78703778 Msa1041170:intron 55.0%
GATGGCCCAGATCTGTTACC+TGG + chr7_1:78705545-78705564 None:intergenic 55.0%
! GCGGACCACACGATTTTTGC+GGG - chr7_1:78706023-78706042 Msa1041170:intron 55.0%
! CGGACCACACGATTTTTGCG+GGG - chr7_1:78706024-78706043 Msa1041170:intron 55.0%
GTCACCCCGCAAAAATCGTG+TGG + chr7_1:78706031-78706050 None:intergenic 55.0%
CGTGGAGTATGGGGTCTTGA+TGG - chr7_1:78706404-78706423 Msa1041170:intron 55.0%
GCATCAGCAGCAGCTTCTTC+TGG + chr7_1:78706600-78706619 None:intergenic 55.0%
GCTGCTGATGCCATCAAAGC+AGG - chr7_1:78706609-78706628 Msa1041170:intron 55.0%
CATCCTGTGTGTGCACTCCT+AGG + chr7_1:78707017-78707036 None:intergenic 55.0%
!! AGGGCTAGCTCTTGATGAGC+TGG + chr7_1:78707183-78707202 None:intergenic 55.0%
GCCCTTGAAGCTGCTAGACA+AGG - chr7_1:78707198-78707217 Msa1041170:intron 55.0%
TGTGGGGAGAGAGGCAAAGT+AGG + chr7_1:78707249-78707268 None:intergenic 55.0%
CAATGACAGCCACAGTTCGG+TGG + chr7_1:78707275-78707294 None:intergenic 55.0%
CACCGAACTGTGGCTGTCAT+TGG - chr7_1:78707273-78707292 Msa1041170:intron 55.0%
GCCCAATGACAGCCACAGTT+CGG + chr7_1:78707278-78707297 None:intergenic 55.0%
TGGGCCCAATTCCGATGTCA+CGG - chr7_1:78707293-78707312 Msa1041170:intron 55.0%
AACGACGTGAGTGATGCGAG+TGG + chr7_1:78707447-78707466 None:intergenic 55.0%
TGCATGACGAGCTGCATCCA+GGG + chr7_1:78707661-78707680 None:intergenic 55.0%
!!! AGGACTGGCTTGCTTTTGCC+TGG - chr7_1:78707738-78707757 Msa1041170:intron 55.0%
! TTTGATGTCTGGTGGGCCTG+TGG - chr7_1:78707821-78707840 Msa1041170:intron 55.0%
GTTGCTGGCATATTGTGGGC+GGG - chr7_1:78707873-78707892 Msa1041170:intron 55.0%
CAATTGCAGCACCACCAGCT+TGG + chr7_1:78707908-78707927 None:intergenic 55.0%
GAGGCAAGCTACCAGTGACA+TGG - chr7_1:78708052-78708071 Msa1041170:intron 55.0%
CCTGGGTACCCTACTTTGCT+TGG + chr7_1:78708129-78708148 None:intergenic 55.0%
! CCAAGCAAAGTAGGGTACCC+AGG - chr7_1:78708126-78708145 Msa1041170:intron 55.0%
! ACCCACAGTGGTGTCAGTTC+CGG - chr7_1:78708239-78708258 Msa1041170:intron 55.0%
ACCGGAACTGACACCACTGT+GGG + chr7_1:78708243-78708262 None:intergenic 55.0%
CCATGTCGATGACCATGCAC+CGG + chr7_1:78708261-78708280 None:intergenic 55.0%
! GGCTTTTCTGCGGTACCCAA+TGG + chr7_1:78708437-78708456 None:intergenic 55.0%
GGAGGAGGAGGAGGATGAAG+AGG + chr7_1:78700241-78700260 None:intergenic 60.0%
! AGGTGTTGTGGAGGAGGAGG+AGG + chr7_1:78700250-78700269 None:intergenic 60.0%
!! TGGTGGTCGGAGGCACTTCA+TGG - chr7_1:78700461-78700480 Msa1041170:three_prime_UTR 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr7_1:78702250-78702269 None:intergenic 60.0%
GGTCGTGGACAGGAAACTCC+CGG - chr7_1:78703693-78703712 Msa1041170:intron 60.0%
GCTAGCACAGGGTCTTCACC+GGG + chr7_1:78703714-78703733 None:intergenic 60.0%
GGCTAGCACAGGGTCTTCAC+CGG + chr7_1:78703715-78703734 None:intergenic 60.0%
GGTGAAGACCCTGTGCTAGC+CGG - chr7_1:78703714-78703733 Msa1041170:intron 60.0%
CAGCTGAGTGGACCGTCATG+AGG - chr7_1:78704280-78704299 Msa1041170:intron 60.0%
! CTGGCTCCGACACCTGCTTT+TGG - chr7_1:78704563-78704582 Msa1041170:intron 60.0%
! CACAGTTCGGTGGCGTTGTG+GGG + chr7_1:78707265-78707284 None:intergenic 60.0%
! CCACAGTTCGGTGGCGTTGT+GGG + chr7_1:78707266-78707285 None:intergenic 60.0%
CTGCATGACGAGCTGCATCC+AGG + chr7_1:78707662-78707681 None:intergenic 60.0%
CACCGGAACTGACACCACTG+TGG + chr7_1:78708244-78708263 None:intergenic 60.0%
! GTGGTGTCAGTTCCGGTGCA+TGG - chr7_1:78708246-78708265 Msa1041170:intron 60.0%
CCGGTGCATGGTCATCGACA+TGG - chr7_1:78708258-78708277 Msa1041170:intron 60.0%
! CGCAGGTGTTGTGGAGGAGG+AGG + chr7_1:78700253-78700272 None:intergenic 65.0%
! CGTCGCAGGTGTTGTGGAGG+AGG + chr7_1:78700256-78700275 None:intergenic 65.0%
! GTGCGTCGCAGGTGTTGTGG+AGG + chr7_1:78700259-78700278 None:intergenic 65.0%
! CACGTGCGTCGCAGGTGTTG+TGG + chr7_1:78700262-78700281 None:intergenic 65.0%
GCTCCGGCGGTTCCTAGAGT+CGG - chr7_1:78700422-78700441 Msa1041170:three_prime_UTR 65.0%
AGAGACCCTAGGTGGGGTCG+TGG - chr7_1:78703678-78703697 Msa1041170:intron 65.0%
CCTGTCCACGACCCCACCTA+GGG + chr7_1:78703686-78703705 None:intergenic 65.0%
TCCTGTCCACGACCCCACCT+AGG + chr7_1:78703687-78703706 None:intergenic 65.0%
CCCACAACGCCACCGAACTG+TGG - chr7_1:78707263-78707282 Msa1041170:intron 65.0%
! GCCACAGTTCGGTGGCGTTG+TGG + chr7_1:78707267-78707286 None:intergenic 65.0%
TGACGAGCTGCATCCAGGGC+AGG + chr7_1:78707657-78707676 None:intergenic 65.0%
GGTTATCCGGGCCAAGCTGG+TGG - chr7_1:78707894-78707913 Msa1041170:intron 65.0%
CCCTAGGTGGGGTCGTGGAC+AGG - chr7_1:78703683-78703702 Msa1041170:intron 70.0%
CGGTGGCGTTGTGGGGAGAG+AGG + chr7_1:78707258-78707277 None:intergenic 70.0%
! GCGGGTTATCCGGGCCAAGC+TGG - chr7_1:78707891-78707910 Msa1041170:intron 70.0%
GCAGCACCACCAGCTTGGCC+CGG + chr7_1:78707903-78707922 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78700156 78709060 78700156 ID=Msa1041170;Name=Msa1041170
chr7_1 mRNA 78700156 78709060 78700156 ID=Msa1041170-mRNA-1;Parent=Msa1041170;Name=Msa1041170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=47|1|1|1|1|1|7|404|772
chr7_1 exon 78700156 78701164 78700156 ID=Msa1041170-mRNA-1:exon:21079;Parent=Msa1041170-mRNA-1
chr7_1 exon 78701259 78701672 78701259 ID=Msa1041170-mRNA-1:exon:21078;Parent=Msa1041170-mRNA-1
chr7_1 exon 78701877 78702227 78701877 ID=Msa1041170-mRNA-1:exon:21077;Parent=Msa1041170-mRNA-1
chr7_1 exon 78702586 78702683 78702586 ID=Msa1041170-mRNA-1:exon:21076;Parent=Msa1041170-mRNA-1
chr7_1 exon 78702790 78702959 78702790 ID=Msa1041170-mRNA-1:exon:21075;Parent=Msa1041170-mRNA-1
chr7_1 exon 78705341 78705619 78705341 ID=Msa1041170-mRNA-1:exon:21074;Parent=Msa1041170-mRNA-1
chr7_1 exon 78708612 78709060 78708612 ID=Msa1041170-mRNA-1:exon:21073;Parent=Msa1041170-mRNA-1
chr7_1 five_prime_UTR 78709014 78709060 78709014 ID=Msa1041170-mRNA-1:five_prime_utr;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78708612 78709013 78708612 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78705341 78705619 78705341 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78702790 78702959 78702790 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78702586 78702683 78702586 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78701877 78702227 78701877 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78701259 78701672 78701259 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 CDS 78700560 78701164 78700560 ID=Msa1041170-mRNA-1:cds;Parent=Msa1041170-mRNA-1
chr7_1 three_prime_UTR 78700156 78700559 78700156 ID=Msa1041170-mRNA-1:three_prime_utr;Parent=Msa1041170-mRNA-1
Gene Sequence

>Msa1041170

ATGTTTCCCACATTCTCACTCTCACATCTCAGCACCCTCTTCATCCTCCTCCTCCTCCACAACACCTGCGACGCACGTGATTCATTCGCGTGCAACGCAAAAGACGGCACAACAAAGAACTTGCCATTTTGCAATGTGAAACTTGCAATACCAGAGAGAGTGAAGGATCTCATTGGAAGATTAACAATGCAAGAGAAAGTTAATCTGTTAGTGAATAATGCTCCGGCGGTTCCTAGAGTCGGAATGAAAAGCTATGAGTGGTGGTCGGAGGCACTTCATGGTGTTTCAAACGTGGGACCTGGTACTAGATTTGGTGGTTTGTTTCCTGGTGCTACTAGTTTTCCTCAAGTTATCACAACCGCTGCTTCTTTTAATGCTTCTTTGTGGGAGGCTATTGGACGGGTTGTCTCGGACGAAGCAAGGGCAATGTACAATGGAGGAGCAGCAGGGTTAACTTATTGGAGTCCAAATGTGAACATTTTCAGAGACCCTAGGTGGGGTCGTGGACAGGAAACTCCCGGTGAAGACCCTGTGCTAGCCGGTAGATATGCTGCTAGTTATGTTAAGGGGCTACAGGGAACAGACGGTAACAAGTTGAAGGTGGCTGCTTGTTGCAAACATTTCACAGCTTATGATGTTGATAATTGGAATGGTGTGGATCGCTTTCACTTTAATGCACTGGTGAGTAAGCAAGACATAGAAGACACATTTGATGTACCATTTAGGATGTGTGTGAAGGAAGGAAAAGTAGCTAGTGTCATGTGTTCTTACAATCAAGTGAATGGGGTCCCTACATGTGCTGATCCAAACCTCTTAAAGAAAACAGTTCGTGGAGTATGGGGTCTTGATGGGTACATTGTATCTGATTGTGACTCTGTCGGGGTGCTTTACAATAGCCAGCATTATGCATCAACGCCAGAAGAAGCTGCTGCTGATGCCATCAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTCCTAGGAGTGCACACACAGGATGCAGTGAAAAAAGGTTTGTTAACTGAAGCAGATGTGAATAATGCTTTGGTGAATACATTGAAGGTGCAAATGAGATTAGGGATGTTTGATGGAGAGCCATCAGCTCAAGCTTATGGAAGATTAGGCCCTAAAGATGTGTGTAAACCAGCTCATCAAGAGCTAGCCCTTGAAGCTGCTAGACAAGGAATTGTGCTTCTCAAAAACAATGGTCCTACTTTGCCTCTCTCCCCACAACGCCACCGAACTGTGGCTGTCATTGGGCCCAATTCCGATGTCACGGTTACCATGATTGGAAACTATGCTGGTATTGCATGTGGATATACCAGCCCCTTACAAGGAATAGGAAGATATGCTAAGACTATTCATCAGCTGGGTTGTTCAAATGTAGCTTGTAGAGATGATAAACAATTTGGGCCTGCCCTGGATGCAGCTCGTCATGCAGATGCAACTATTCTAGTGATGGGCTTGGACCAATCTATAGAAGCTGAAACTGTTGATAGGACTGGCTTGCTTTTGCCTGGACATCAACAAGATCTTGTTTCAAAGGTGGCAGCTGCATCAAAGGGACCAACTATTTTGGTTTTGATGTCTGGTGGGCCTGTGGACATTACTTTTGCAAAGAATGACCCCAAAGTTGCTGGCATATTGTGGGCGGGTTATCCGGGCCAAGCTGGTGGTGCTGCAATTGCTGACATTTTATTTGGAACTGCTAACCCAGGAGGCAAGCTACCAGTGACATGGTACCCACAAGAGTACCTAAAAAACTTGGCCATGACAAATATGGCAATGAGACCAAGCAAAGTAGGGTACCCAGGAAGAACATATAGATTCTACAAGGGACCAGTCGTGTATCCATTTGGACATGGATTAACATACACACATTTTGTTCACGAATTATCTAGTGCACCCACAGTGGTGTCAGTTCCGGTGCATGGTCATCGACATGGCAACAACACAAACATTTCAAACAAAGCAATTAGAGTGACACATGCAAGATGTGGCAAACTCTCCATTGCCCTTCACGTTGATGTCAAAAATGTGGGATCTAGAGATGGTACTCACACGCTGTTAGTGTTCTCTGCTCCACCTAATGGAGGTAACCATTGGGTACCGCAGAAAAGCCTAGTTGCTTTTGAGAAAGTTCATGTTCCTGCCAAGACTAAGCAAAGGGTTAGAGTTAATATTCATGTTTGTAAGTTGCTTAGTGTAGTTGATAAATCTGGGATTAGGAGAATTCCAATGGGAGAACATAGTCTTCACATTGGTGATGTTAAGCATTCGGTTTCACTTCAAGCAGAAGCACTTGGGATTATCAAGTCTTGA
Protein sequence

>Msa1041170

MFPTFSLSHLSTLFILLLLHNTCDARDSFACNAKDGTTKNLPFCNVKLAIPERVKDLIGRLTMQEKVNLLVNNAPAVPRVGMKSYEWWSEALHGVSNVGPGTRFGGLFPGATSFPQVITTAASFNASLWEAIGRVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGRYAASYVKGLQGTDGNKLKVAACCKHFTAYDVDNWNGVDRFHFNALVSKQDIEDTFDVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGVWGLDGYIVSDCDSVGVLYNSQHYASTPEEAAADAIKAGLDLDCGPFLGVHTQDAVKKGLLTEADVNNALVNTLKVQMRLGMFDGEPSAQAYGRLGPKDVCKPAHQELALEAARQGIVLLKNNGPTLPLSPQRHRTVAVIGPNSDVTVTMIGNYAGIACGYTSPLQGIGRYAKTIHQLGCSNVACRDDKQFGPALDAARHADATILVMGLDQSIEAETVDRTGLLLPGHQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNDPKVAGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQEYLKNLAMTNMAMRPSKVGYPGRTYRFYKGPVVYPFGHGLTYTHFVHELSSAPTVVSVPVHGHRHGNNTNISNKAIRVTHARCGKLSIALHVDVKNVGSRDGTHTLLVFSAPPNGGNHWVPQKSLVAFEKVHVPAKTKQRVRVNIHVCKLLSVVDKSGIRRIPMGEHSLHIGDVKHSVSLQAEALGIIKS*