AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850600 MtrunA17_Chr5g0426311 96.864 287 4 2 1 286 1 283 0.0 548
Msa0850600 MtrunA17_Chr3g0144311 59.585 193 73 4 7 199 20 207 1.88e-59 191
Msa0850600 MtrunA17_Chr4g0017401 63.636 121 38 2 9 127 9 125 2.56e-47 159
Msa0850600 MtrunA17_Chr8g0346011 77.273 88 20 0 7 94 28 115 1.16e-45 155
Msa0850600 MtrunA17_Chr7g0276531 73.333 90 24 0 8 97 10 99 1.20e-44 152
Msa0850600 MtrunA17_Chr3g0127751 69.565 92 27 1 8 99 18 108 1.95e-41 143
Msa0850600 MtrunA17_Chr2g0290191 40.367 109 49 3 17 110 5 112 1.67e-21 94.0
Msa0850600 MtrunA17_Chr2g0290191 29.530 149 95 2 17 159 107 251 1.28e-13 70.5
Msa0850600 MtrunA17_Chr4g0045921 48.193 83 43 0 12 94 72 154 2.68e-18 83.6
Msa0850600 MtrunA17_Chr8g0360551 44.578 83 46 0 12 94 69 151 3.48e-18 84.0
Msa0850600 MtrunA17_Chr8g0360551 31.967 122 75 2 12 125 161 282 6.01e-13 68.6
Msa0850600 MtrunA17_Chr3g0101061 38.750 80 48 1 5 84 29 107 7.31e-18 83.2
Msa0850600 MtrunA17_Chr7g0255011 41.667 84 49 0 11 94 122 205 5.83e-17 80.5
Msa0850600 MtrunA17_Chr1g0186351 38.750 80 48 1 12 91 2 80 4.52e-16 77.8
Msa0850600 MtrunA17_Chr4g0035051 44.595 74 40 1 17 89 9 82 1.03e-15 72.0
Msa0850600 MtrunA17_Chr5g0440831 39.759 83 50 0 12 94 161 243 1.20e-15 76.6
Msa0850600 MtrunA17_Chr2g0278661 41.892 74 42 1 12 84 3 76 8.71e-15 72.4
Msa0850600 MtrunA17_Chr5g0447761 40.000 75 44 1 17 91 7 80 2.72e-14 72.8
Msa0850600 MtrunA17_Chr4g0035031 43.421 76 42 1 17 91 9 84 2.85e-14 69.7
Msa0850600 MtrunA17_Chr3g0121631 40.580 69 41 0 16 84 36 104 1.85e-13 66.6
Msa0850600 MtrunA17_Chr4g0035001 41.892 74 42 1 17 89 7 80 2.19e-13 66.6
Msa0850600 MtrunA17_Chr4g0061451 40.964 83 47 2 16 97 42 123 3.33e-13 68.2
Msa0850600 MtrunA17_Chr4g0031091 42.254 71 40 1 16 85 33 103 7.30e-13 63.9
Msa0850600 MtrunA17_Chr4g0050781 42.029 69 39 1 17 84 8 76 1.05e-12 65.9
Msa0850600 MtrunA17_Chr3g0119311 37.037 81 41 2 16 96 36 106 1.09e-12 63.9
Msa0850600 MtrunA17_Chr3g0086861 40.449 89 51 2 10 97 38 125 1.10e-12 67.8
Msa0850600 MtrunA17_Chr1g0210241 34.940 83 50 1 16 98 7 85 1.36e-12 66.6
Msa0850600 MtrunA17_Chr7g0266751 34.831 89 54 1 17 105 33 117 3.19e-12 62.8
Msa0850600 MtrunA17_Chr3g0135111 32.800 125 73 3 12 129 6 126 4.98e-12 65.5
Msa0850600 MtrunA17_Chr7g0219031 42.424 66 37 1 17 81 41 106 4.15e-11 59.3
Msa0850600 MtrunA17_Chr3g0120721 34.722 72 46 1 17 88 19 89 6.88e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850600 AT1G22330.1 65.217 207 51 7 5 203 6 199 1.12e-64 204
Msa0850600 AT1G78260.1 53.992 263 73 12 5 235 6 252 1.04e-56 184
Msa0850600 AT1G78260.2 56.604 265 63 12 5 235 6 252 5.46e-56 182
Msa0850600 AT1G76460.1 48.661 224 101 6 5 217 12 232 1.00e-54 179
Msa0850600 AT1G20880.2 44.178 292 120 13 5 282 12 274 2.97e-51 170
Msa0850600 AT1G20880.3 44.178 292 120 13 5 282 12 274 2.97e-51 170
Msa0850600 AT1G20880.1 44.178 292 120 13 5 282 12 274 2.97e-51 170
Msa0850600 AT1G33470.3 51.899 158 70 4 12 167 3 156 3.48e-46 155
Msa0850600 AT1G33470.1 51.899 158 70 4 12 167 3 156 4.02e-46 155
Msa0850600 AT2G46780.1 49.223 193 85 6 12 192 18 209 3.62e-45 155
Msa0850600 AT2G46780.2 49.223 193 85 6 12 192 18 209 3.62e-45 155
Msa0850600 AT1G33470.2 52.632 152 66 4 12 161 3 150 1.07e-44 152
Msa0850600 AT1G22910.2 69.388 98 28 1 10 105 7 104 1.94e-43 149
Msa0850600 AT1G22910.1 69.388 98 28 1 10 105 7 104 5.88e-43 147
Msa0850600 AT1G22910.3 67.308 104 27 2 10 111 7 105 9.44e-43 150
Msa0850600 AT3G54770.1 66.304 92 30 1 10 100 11 102 1.37e-37 134
Msa0850600 AT3G54770.3 66.304 92 30 1 10 100 11 102 1.90e-37 134
Msa0850600 AT5G11412.1 58.889 90 37 0 5 94 41 130 1.04e-34 124
Msa0850600 AT5G53680.1 49.000 100 47 2 5 101 3 101 1.59e-29 110
Msa0850600 AT5G53720.1 54.430 79 36 0 16 94 9 87 1.18e-25 98.2
Msa0850600 AT3G06970.1 47.423 97 50 1 12 107 8 104 1.47e-25 103
Msa0850600 AT3G54770.2 66.176 68 22 1 32 98 1 68 8.32e-25 99.4
Msa0850600 AT5G47620.1 47.826 69 35 1 16 84 6 73 2.42e-18 84.7
Msa0850600 AT5G47620.2 47.826 69 35 1 16 84 6 73 2.42e-18 84.7
Msa0850600 AT5G47620.5 47.826 69 35 1 16 84 6 73 2.42e-18 84.7
Msa0850600 AT5G47620.4 47.826 69 35 1 16 84 6 73 2.66e-18 84.7
Msa0850600 AT2G22090.2 43.373 83 47 0 12 94 100 182 1.43e-17 82.0
Msa0850600 AT2G22090.1 43.373 83 47 0 12 94 100 182 1.44e-17 82.0
Msa0850600 AT4G26650.2 41.667 72 41 1 13 84 9 79 2.92e-17 81.6
Msa0850600 AT4G26650.1 41.667 72 41 1 13 84 12 82 3.00e-17 81.6
Msa0850600 AT3G15010.1 45.783 83 45 0 12 94 71 153 3.25e-17 81.3
Msa0850600 AT3G15010.1 36.364 88 56 0 8 95 159 246 1.31e-15 76.6
Msa0850600 AT3G15010.2 45.783 83 45 0 12 94 71 153 3.25e-17 81.3
Msa0850600 AT3G15010.2 36.364 88 56 0 8 95 159 246 1.31e-15 76.6
Msa0850600 AT4G39260.3 40.625 96 45 3 17 111 7 91 4.75e-17 75.1
Msa0850600 AT5G55550.5 41.096 73 42 1 12 84 2 73 5.38e-17 80.9
Msa0850600 AT5G55550.4 41.096 73 42 1 12 84 2 73 5.38e-17 80.9
Msa0850600 AT5G55550.9 41.096 73 42 1 12 84 2 73 5.38e-17 80.9
Msa0850600 AT5G55550.7 41.096 73 42 1 12 84 2 73 5.38e-17 80.9
Msa0850600 AT5G55550.1 41.096 73 42 1 12 84 2 73 5.38e-17 80.9
Msa0850600 AT5G55550.2 41.096 73 42 1 12 84 2 73 6.12e-17 80.9
Msa0850600 AT5G55550.3 41.096 73 42 1 12 84 2 73 6.12e-17 80.9
Msa0850600 AT5G55550.6 41.096 73 42 1 12 84 2 73 6.12e-17 80.9
Msa0850600 AT5G55550.11 41.096 73 42 1 12 84 2 73 6.12e-17 80.9
Msa0850600 AT5G55550.8 41.096 73 42 1 12 84 2 73 6.61e-17 80.9
Msa0850600 AT5G55550.10 41.096 73 42 1 12 84 2 73 7.01e-17 80.9
Msa0850600 AT4G39260.2 43.421 76 42 1 17 91 7 82 7.92e-17 75.5
Msa0850600 AT4G39260.1 43.421 76 42 1 17 91 7 82 2.18e-16 75.5
Msa0850600 AT4G13850.3 40.909 88 48 2 16 102 35 119 3.49e-16 74.3
Msa0850600 AT2G41060.1 39.759 83 50 0 12 94 124 206 4.00e-16 78.6
Msa0850600 AT2G41060.3 39.759 83 50 0 12 94 124 206 4.00e-16 78.6
Msa0850600 AT2G41060.2 39.759 83 50 0 12 94 124 206 4.00e-16 78.6
Msa0850600 AT4G13850.2 40.909 88 48 2 16 102 35 119 4.31e-16 74.3
Msa0850600 AT4G13850.1 40.909 88 48 2 16 102 35 119 4.82e-16 74.3
Msa0850600 AT3G23830.2 38.636 88 50 2 16 102 35 119 6.21e-16 73.6
Msa0850600 AT3G23830.1 38.636 88 50 2 16 102 35 119 6.21e-16 73.6
Msa0850600 AT4G39260.4 45.161 62 34 0 17 78 7 68 6.97e-16 72.4
Msa0850600 AT3G07810.1 40.000 75 44 1 17 91 7 80 2.86e-15 75.9
Msa0850600 AT3G07810.2 40.000 75 44 1 17 91 7 80 2.97e-15 75.9
Msa0850600 AT2G21660.2 42.683 82 45 2 11 91 4 84 5.15e-15 71.6
Msa0850600 AT2G21660.1 42.683 82 45 2 11 91 4 84 7.35e-15 71.6
Msa0850600 AT4G13850.4 41.667 72 38 1 16 87 35 102 9.30e-15 70.1
Msa0850600 AT3G56860.9 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.11 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.8 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.5 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.7 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.2 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.6 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.10 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.3 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.1 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT3G56860.4 39.759 83 50 0 12 94 136 218 1.01e-14 74.3
Msa0850600 AT2G33410.1 35.870 92 57 2 17 108 7 96 2.03e-14 73.2
Msa0850600 AT2G19380.1 39.506 81 49 0 12 92 404 484 2.43e-14 73.6
Msa0850600 AT4G14300.1 37.500 80 49 1 12 91 2 80 4.61e-14 72.4
Msa0850600 AT4G14300.2 37.500 80 49 1 12 91 2 80 4.61e-14 72.4
Msa0850600 AT1G17640.2 41.667 72 41 1 17 88 67 137 8.37e-14 71.2
Msa0850600 AT1G17640.2 46.667 60 32 0 17 76 158 217 9.59e-11 62.0
Msa0850600 AT1G17640.1 41.667 72 41 1 17 88 67 137 8.37e-14 71.2
Msa0850600 AT1G17640.1 46.667 60 32 0 17 76 158 217 9.59e-11 62.0
Msa0850600 AT1G17640.3 41.667 72 41 1 17 88 67 137 8.37e-14 71.2
Msa0850600 AT1G17640.3 46.667 60 32 0 17 76 158 217 9.59e-11 62.0
Msa0850600 AT2G22100.1 34.940 83 54 0 6 88 153 235 1.89e-13 70.1
Msa0850600 AT3G26420.1 40.580 69 40 1 17 84 8 76 3.82e-12 65.1
Msa0850600 AT5G04280.1 35.294 102 60 2 16 115 7 104 1.13e-11 64.7
Msa0850600 AT1G74230.1 37.662 77 48 0 16 92 34 110 1.14e-11 64.3
Msa0850600 AT5G61030.2 33.333 78 48 1 16 93 40 113 1.38e-11 64.3
Msa0850600 AT5G61030.1 33.333 78 48 1 16 93 40 113 1.38e-11 64.3
Msa0850600 AT1G18630.1 41.429 70 40 1 16 84 36 105 1.83e-11 61.6
Msa0850600 AT5G59865.1 48.980 49 25 0 16 64 26 74 3.11e-11 59.7
Msa0850600 AT1G22910.4 65.217 46 14 1 62 105 8 53 3.13e-11 62.0

Find 124 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTATGGCATTCCAAATT+TGG 0.131556 5_4:+40216684 Msa0850600:three_prime_UTR
TTGATTAATCAGTCCAAATT+TGG 0.158048 5_4:-40216697 None:intergenic
CAATACTATCAACAACTTTA+TGG 0.198535 5_4:+40213932 Msa0850600:CDS
CCACATTATCGATCACAATT+TGG 0.217645 5_4:+40210363 Msa0850600:CDS
GCTTCTCCTCCTTCTCTCTT+TGG 0.254321 5_4:+40209851 Msa0850600:five_prime_UTR
ATTTAGTGATTCTCTCCTAT+TGG 0.255682 5_4:+40210107 Msa0850600:five_prime_UTR
GGAGAAGGTTGCCTTATTAA+TGG 0.270286 5_4:-40214139 None:intergenic
ATGGGTTCACCATATTATTA+TGG 0.277771 5_4:+40213971 Msa0850600:CDS
CTTCCATCAATTACCGGGTT+TGG 0.284543 5_4:-40210682 None:intergenic
ACTTGAGGGTACCCGTATTC+AGG 0.296691 5_4:-40213745 None:intergenic
TTTAGTGATTCTCTCCTATT+GGG 0.315114 5_4:+40210108 Msa0850600:five_prime_UTR
CAAGCCCTTCTAGCTGATTC+TGG 0.316155 5_4:-40210652 None:intergenic
CACTTCAACAACCATTAATA+AGG 0.322262 5_4:+40214128 Msa0850600:CDS
AGCTTGTATGCGATGTGGTT+GGG 0.337761 5_4:-40214038 None:intergenic
GCTCTTCTTCCATCAATTAC+CGG 0.348588 5_4:-40210688 None:intergenic
GGACTGATTAATCAACTTCA+TGG 0.352176 5_4:+40216705 Msa0850600:three_prime_UTR
GATTATGCGGTATGGTTGTT+TGG 0.362901 5_4:-40210037 None:intergenic
GCTCCTTCCATTGGTGTAGT+AGG 0.368922 5_4:-40214082 None:intergenic
TACGCCGCTGCTGCTCCTCC+TGG 0.388874 5_4:-40211332 None:intergenic
ATTGAATTTGAAGATTATAC+AGG 0.389867 5_4:-40216580 None:intergenic
ATAGAATAGCCATAATAATA+TGG 0.394438 5_4:-40213980 None:intergenic
ATGACTTGTGTTCTTCACTA+TGG 0.398359 5_4:+40216670 Msa0850600:three_prime_UTR
CCCACCTACACTCCTGAATA+CGG 0.401412 5_4:+40213733 Msa0850600:CDS
GTGATCCAGAATCAGCTAGA+AGG 0.404501 5_4:+40210647 Msa0850600:CDS
GGCAGGAGGGCCACCACAAA+TGG 0.409472 5_4:+40211367 Msa0850600:CDS
TGTAGTAGGGTAGTATAGAT+AGG 0.410340 5_4:-40214068 None:intergenic
AATTGTAACATTGCTTCTCT+TGG 0.414331 5_4:+40210712 Msa0850600:CDS
CCTCTTGGTGGTGATGGTCT+AGG 0.428010 5_4:-40210739 None:intergenic
GCAAACACTAATATGCTTGC+TGG 0.433743 5_4:-40209874 None:intergenic
GTTGCTCCTCCTGCCATTTG+TGG 0.434650 5_4:-40211380 None:intergenic
AGCGGCGTACGGCGGTGTTC+CGG 0.436874 5_4:+40211346 Msa0850600:CDS
AGAGAAGGAGGAGAAGCTAA+TGG 0.440154 5_4:-40209845 None:intergenic
GATTATACAGGTTGAAACTA+AGG 0.440593 5_4:-40216568 None:intergenic
CTCCTTCCATTGGTGTAGTA+GGG 0.454529 5_4:-40214081 None:intergenic
GATCCAAACCCGGTAATTGA+TGG 0.454852 5_4:+40210679 Msa0850600:CDS
TAATTACCTCTTGGTGGTGA+TGG 0.454939 5_4:-40210745 None:intergenic
TGGACCATCATCTTCAACAA+TGG 0.459048 5_4:+40213952 Msa0850600:CDS
ACCTCATCAGAGACAGCATC+TGG 0.463906 5_4:+40216475 Msa0850600:CDS
CTCTTCTTCCATCAATTACC+GGG 0.464479 5_4:-40210687 None:intergenic
ATTATCACTGATAAGAATAC+AGG 0.469048 5_4:+40210492 Msa0850600:CDS
GGAGGGCCACCACAAATGGC+AGG 0.475742 5_4:+40211371 Msa0850600:CDS
GGAGGAGCAGCAGCGGCGTA+CGG 0.476509 5_4:+40211335 Msa0850600:CDS
GGACCATCATCTTCAACAAT+GGG 0.476751 5_4:+40213953 Msa0850600:CDS
GGTGTGGGGACAGGAGCACC+AGG 0.477832 5_4:+40211314 Msa0850600:CDS
AGCACCAGGAGGAGCAGCAG+CGG 0.478510 5_4:+40211328 Msa0850600:CDS
TGAAATTAATTACCTCTTGG+TGG 0.486134 5_4:-40210751 None:intergenic
GAGAGAGAAGAGAGTAGTGG+AGG 0.489295 5_4:-40209934 None:intergenic
ATTTGTGGTGGCCCTCCTGC+CGG 0.491579 5_4:-40211365 None:intergenic
CAGCTTGTATGCGATGTGGT+TGG 0.492117 5_4:-40214039 None:intergenic
TATGTCCTCATTTCATCAGT+TGG 0.492209 5_4:-40210435 None:intergenic
GAGAAAGTTGCTCCTTCCAT+TGG 0.493319 5_4:-40214091 None:intergenic
TTAAGAGAAAAGAGAGAGAG+AGG 0.497921 5_4:-40210083 None:intergenic
TACGGCGGTGTTCCGGCAGG+AGG 0.505951 5_4:+40211353 Msa0850600:CDS
TGGAGACACAACATTCACTA+AGG 0.512883 5_4:+40210383 Msa0850600:CDS
TATTGTGCTTGCTGAATCTG+TGG 0.514006 5_4:-40213914 None:intergenic
AAGAATACAGGAAAATCTAA+AGG 0.522577 5_4:+40210504 Msa0850600:CDS
GCTCCTCCTGCCATTTGTGG+TGG 0.523998 5_4:-40211377 None:intergenic
GCAGGGAGGGGTACATATCA+AGG 0.525507 5_4:+40211287 Msa0850600:intron
GCGTACGGCGGTGTTCCGGC+AGG 0.531532 5_4:+40211350 Msa0850600:CDS
AGGGGTACATATCAAGGTGG+GGG 0.532228 5_4:+40211293 Msa0850600:CDS
ACAGGAAAATCTAAAGGATA+CGG 0.534361 5_4:+40210510 Msa0850600:CDS
GCTTGTATGCGATGTGGTTG+GGG 0.534607 5_4:-40214037 None:intergenic
ATCAAGTGTACTACTACTCT+TGG 0.536002 5_4:-40210262 None:intergenic
CAACCACATCGCATACAAGC+TGG 0.537393 5_4:+40214040 Msa0850600:CDS
AAGAGGTGTTGTTGAATGGT+GGG 0.539075 5_4:+40210140 Msa0850600:five_prime_UTR
CCCGTATTCAGGAGTGTAGG+TGG 0.540062 5_4:-40213734 None:intergenic
ATTATACAGGTTGAAACTAA+GGG 0.541207 5_4:-40216567 None:intergenic
CCGTATGGTTGGTACATCAC+TGG 0.541567 5_4:-40211410 None:intergenic
ATAGAGAGAGAAGAGAGTAG+TGG 0.544647 5_4:-40209937 None:intergenic
CTTATTAATGGTTGTTGAAG+TGG 0.545928 5_4:-40214127 None:intergenic
AAAGATTACCACTAGGAGAA+GGG 0.546590 5_4:-40214165 None:intergenic
GAGGGGTACATATCAAGGTG+GGG 0.550871 5_4:+40211292 Msa0850600:CDS
CCAAATTGTGATCGATAATG+TGG 0.553655 5_4:-40210363 None:intergenic
GAAAGATTACCACTAGGAGA+AGG 0.553884 5_4:-40214166 None:intergenic
GGGAGGGGTACATATCAAGG+TGG 0.557161 5_4:+40211290 Msa0850600:intron
TGTTAATTAATTTGATGCAA+TGG 0.557469 5_4:+40210335 Msa0850600:exon
CCAGTGATGTACCAACCATA+CGG 0.557492 5_4:+40211410 Msa0850600:CDS
CTAGGAGAAGGGGTAGGAGA+AGG 0.561216 5_4:-40214154 None:intergenic
TCGGAAAGTTCAAATACTCA+AGG 0.561904 5_4:+40216511 Msa0850600:CDS
AGCTAACTTACCCGTATGGT+TGG 0.569031 5_4:-40211421 None:intergenic
AAGAAAGAGGTGTTGTTGAA+TGG 0.570970 5_4:+40210136 Msa0850600:five_prime_UTR
ATCTGGAGTAGTTATAACTT+CGG 0.572225 5_4:+40216492 Msa0850600:CDS
GGAGGGGTACATATCAAGGT+GGG 0.575240 5_4:+40211291 Msa0850600:CDS
ATTGTGCTTGCTGAATCTGT+GGG 0.576111 5_4:-40213913 None:intergenic
CCACCTACACTCCTGAATAC+GGG 0.576471 5_4:+40213734 Msa0850600:CDS
TGATCCAGAATCAGCTAGAA+GGG 0.577679 5_4:+40210648 Msa0850600:CDS
AAAGAGGTGTTGTTGAATGG+TGG 0.578458 5_4:+40210139 Msa0850600:five_prime_UTR
GGAGCAGCAGCGGCGTACGG+CGG 0.578552 5_4:+40211338 Msa0850600:CDS
TGCTGGCCAAAGAGAGAAGG+AGG 0.581081 5_4:-40209857 None:intergenic
ATACTACCCTACTACACCAA+TGG 0.581425 5_4:+40214075 Msa0850600:CDS
TATGCAAGCAGCAGCACCAA+GGG 0.588236 5_4:+40214000 Msa0850600:CDS
GTAGGGTAGTATAGATAGGA+TGG 0.589808 5_4:-40214064 None:intergenic
CCGTATTCAGGAGTGTAGGT+GGG 0.589906 5_4:-40213733 None:intergenic
TCTCCTACCCCTTCTCCTAG+TGG 0.593229 5_4:+40214157 Msa0850600:CDS
AAGATTACCACTAGGAGAAG+GGG 0.593298 5_4:-40214164 None:intergenic
AGAGGTGTTGTTGAATGGTG+GGG 0.600498 5_4:+40210141 Msa0850600:five_prime_UTR
GGTGTTGAAAATGTACCCCT+TGG 0.604699 5_4:-40214016 None:intergenic
GCTTGCTGGCCAAAGAGAGA+AGG 0.606205 5_4:-40209860 None:intergenic
AATATGATGATTATGCGGTA+TGG 0.610233 5_4:-40210045 None:intergenic
AAACTCCAACTGATGAAATG+AGG 0.611186 5_4:+40210430 Msa0850600:CDS
ACATAGCTAACTTACCCGTA+TGG 0.611192 5_4:-40211425 None:intergenic
GAACCCATTGTTGAAGATGA+TGG 0.613054 5_4:-40213956 None:intergenic
CGGAAAGTTCAAATACTCAA+GGG 0.613076 5_4:+40216512 Msa0850600:CDS
GGCTTGTGCTGATCCAAACC+CGG 0.613733 5_4:+40210669 Msa0850600:CDS
CAGTGATGTACCAACCATAC+GGG 0.620449 5_4:+40211411 Msa0850600:CDS
GGGCCACCACAAATGGCAGG+AGG 0.622370 5_4:+40211374 Msa0850600:CDS
CGTATTCAGGAGTGTAGGTG+GGG 0.623905 5_4:-40213732 None:intergenic
ACGGCGGTGTTCCGGCAGGA+GGG 0.631360 5_4:+40211354 Msa0850600:CDS
TCCAGATGCTGTCTCTGATG+AGG 0.638137 5_4:-40216476 None:intergenic
TACCCTACTACACCAATGGA+AGG 0.640780 5_4:+40214079 Msa0850600:CDS
TTATACAGGTTGAAACTAAG+GGG 0.641425 5_4:-40216566 None:intergenic
CTATGCAAGCAGCAGCACCA+AGG 0.651575 5_4:+40213999 Msa0850600:CDS
GTACCCGTATTCAGGAGTGT+AGG 0.661197 5_4:-40213737 None:intergenic
AGTGAAGAACACAAGTCATG+TGG 0.666369 5_4:-40216666 None:intergenic
TACAGGTTGAAACTAAGGGG+GGG 0.672454 5_4:-40216563 None:intergenic
GTGGGGACAGGAGCACCAGG+AGG 0.675679 5_4:+40211317 Msa0850600:CDS
CCTAGACCATCACCACCAAG+AGG 0.681390 5_4:+40210739 Msa0850600:CDS
CTATTGGGAAAAGAAGAAAG+AGG 0.683433 5_4:+40210123 Msa0850600:five_prime_UTR
TTACCACTAGGAGAAGGGGT+AGG 0.689545 5_4:-40214160 None:intergenic
TATACAGGTTGAAACTAAGG+GGG 0.689755 5_4:-40216565 None:intergenic
TTATGAATATGATGATTATG+CGG 0.707070 5_4:-40210050 None:intergenic
GGTCCAGCTTGTATGCGATG+TGG 0.710376 5_4:-40214043 None:intergenic
ATACAGGTTGAAACTAAGGG+GGG 0.721574 5_4:-40216564 None:intergenic
ATGCAAGCAGCAGCACCAAG+GGG 0.733849 5_4:+40214001 Msa0850600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACAAAAAATATTTAAAA+GGG - chr5_4:40209992-40210011 None:intergenic 10.0%
!! ACAAACAAAAAATATTTAAA+AGG - chr5_4:40209993-40210012 None:intergenic 10.0%
!!! TAATATATTTTTTAGAGTAA+GGG - chr5_4:40211732-40211751 None:intergenic 10.0%
!!! TTAATATATTTTTTAGAGTA+AGG - chr5_4:40211733-40211752 None:intergenic 10.0%
!!! TAAATATTTCTTAAATTTTG+TGG + chr5_4:40211920-40211939 Msa0850600:intron 10.0%
!! AGAAAATATTAAAAATAGAA+AGG + chr5_4:40212103-40212122 Msa0850600:intron 10.0%
!! GAAAATATTAAAAATAGAAA+GGG + chr5_4:40212104-40212123 Msa0850600:intron 10.0%
!! AAAATATTAAAAATAGAAAG+GGG + chr5_4:40212105-40212124 Msa0850600:intron 10.0%
!!! CATATATTTTTTTTAGTATT+AGG + chr5_4:40213845-40213864 Msa0850600:intron 10.0%
!! ATTAAATTAATATAAAGAAG+AGG - chr5_4:40214195-40214214 None:intergenic 10.0%
!! AACAATAGTATTAAAATAAA+TGG - chr5_4:40216370-40216389 None:intergenic 10.0%
!!! ATTATATCTTCAATTTTTTT+CGG + chr5_4:40216642-40216661 Msa0850600:three_prime_UTR 10.0%
!! TTATAATGATGATTATGATA+AGG - chr5_4:40210574-40210593 None:intergenic 15.0%
!! TTCATAAATAAAAACATTAG+TGG - chr5_4:40210791-40210810 None:intergenic 15.0%
!! AAGTGAAATATATAGAATTA+AGG + chr5_4:40210914-40210933 Msa0850600:intron 15.0%
!! AGTGAAATATATAGAATTAA+GGG + chr5_4:40210915-40210934 Msa0850600:intron 15.0%
!! TTAATATCACCATAAAAATT+AGG + chr5_4:40210985-40211004 Msa0850600:intron 15.0%
!! CAAATTAATAACATTTAGTA+GGG - chr5_4:40211213-40211232 None:intergenic 15.0%
!! ACAAATTAATAACATTTAGT+AGG - chr5_4:40211214-40211233 None:intergenic 15.0%
!!! TGAAATGATAAAGTATATTT+TGG + chr5_4:40211245-40211264 Msa0850600:intron 15.0%
!!! TTTCATTATTTTTTAGAGTA+AGG - chr5_4:40211773-40211792 None:intergenic 15.0%
!!! AAGTTATACATGAATTTTAT+AGG + chr5_4:40212072-40212091 Msa0850600:intron 15.0%
!! AAATATTAAAAATAGAAAGG+GGG + chr5_4:40212106-40212125 Msa0850600:intron 15.0%
!!! AAAAAATGATGATGATAAAT+AGG + chr5_4:40212217-40212236 Msa0850600:intron 15.0%
!!! AATATTTTTTATGCAAAAGA+CGG - chr5_4:40212695-40212714 None:intergenic 15.0%
!!! ATTTTATACCTTTTTAATGT+AGG - chr5_4:40212802-40212821 None:intergenic 15.0%
!! TAATTAACGTGTAAATAATT+TGG - chr5_4:40212926-40212945 None:intergenic 15.0%
!! TATCATATTATAAGTTAGTT+CGG + chr5_4:40213059-40213078 Msa0850600:intron 15.0%
!! ATTAAATTACAAAGCAAAAA+AGG - chr5_4:40213688-40213707 None:intergenic 15.0%
!! GTAAATTTGAAAAGATTAAA+GGG - chr5_4:40214225-40214244 None:intergenic 15.0%
!! AGTAAATTTGAAAAGATTAA+AGG - chr5_4:40214226-40214245 None:intergenic 15.0%
!! AAAAACATAAATGTTACAAA+TGG - chr5_4:40215314-40215333 None:intergenic 15.0%
!! ATACAAATTCATTGTATAAA+AGG - chr5_4:40215552-40215571 None:intergenic 15.0%
!!! TTTTTTTTTTTACGTAAACA+TGG - chr5_4:40216044-40216063 None:intergenic 15.0%
!!! AATATTAAATAGGTTGAAAT+TGG - chr5_4:40216298-40216317 None:intergenic 15.0%
!!! TAATTATTGTTTCTTATGAT+TGG + chr5_4:40216423-40216442 Msa0850600:intron 15.0%
!! TTATGAATATGATGATTATG+CGG - chr5_4:40210053-40210072 None:intergenic 20.0%
!!! TGTTAATTAATTTGATGCAA+TGG + chr5_4:40210335-40210354 Msa0850600:exon 20.0%
!! ATGATAAATATTGAATATGC+AGG + chr5_4:40210615-40210634 Msa0850600:intron 20.0%
!!! GAATTTCAATTTTTTTGGTT+TGG - chr5_4:40211133-40211152 None:intergenic 20.0%
!!! GAGATGAATTTCAATTTTTT+TGG - chr5_4:40211138-40211157 None:intergenic 20.0%
!!! AATGATAAAGTATATTTTGG+TGG + chr5_4:40211248-40211267 Msa0850600:intron 20.0%
!!! ATGATAAAGTATATTTTGGT+GGG + chr5_4:40211249-40211268 Msa0850600:intron 20.0%
!! ATAATAATGTGTGTATTTCT+TGG + chr5_4:40211891-40211910 Msa0850600:intron 20.0%
!! TAGTAATGTGACTTTAATAA+TGG - chr5_4:40212014-40212033 None:intergenic 20.0%
!! AATATTAAAAATAGAAAGGG+GGG + chr5_4:40212107-40212126 Msa0850600:intron 20.0%
!! AAATATCAAAAACTAGAGAA+AGG + chr5_4:40212166-40212185 Msa0850600:intron 20.0%
!! AATCTTATTCGATATAATGT+CGG - chr5_4:40212654-40212673 None:intergenic 20.0%
!! AAATTTCACATTTGTTCTTA+AGG + chr5_4:40212740-40212759 Msa0850600:intron 20.0%
!! AATTTCACATTTGTTCTTAA+GGG + chr5_4:40212741-40212760 Msa0850600:intron 20.0%
!! CAATACATATAAAAATAGCT+TGG + chr5_4:40213115-40213134 Msa0850600:intron 20.0%
!! ATAAAGTGCATTAAAAAGAA+TGG - chr5_4:40213283-40213302 None:intergenic 20.0%
!! TCATAATCAATTCAATCTTA+GGG + chr5_4:40213390-40213409 Msa0850600:intron 20.0%
!! ATTTCACATTGATCAATTTA+AGG + chr5_4:40213484-40213503 Msa0850600:intron 20.0%
!!! AATTTCTTATCAATAGCTTT+TGG - chr5_4:40213524-40213543 None:intergenic 20.0%
!! GTATGATCTTAATTGATTAT+GGG - chr5_4:40213783-40213802 None:intergenic 20.0%
!! TGTATGATCTTAATTGATTA+TGG - chr5_4:40213784-40213803 None:intergenic 20.0%
!! AATTTGTAATTTATGAGTAC+AGG + chr5_4:40213877-40213896 Msa0850600:intron 20.0%
!! ATAGAATAGCCATAATAATA+TGG - chr5_4:40213983-40214002 None:intergenic 20.0%
!!! TTATGAGATAATTTTTCACA+TGG + chr5_4:40215191-40215210 Msa0850600:intron 20.0%
!!! TATGAGATAATTTTTCACAT+GGG + chr5_4:40215192-40215211 Msa0850600:intron 20.0%
!!! AGCATTTTCAATTTTGTTAT+TGG + chr5_4:40215521-40215540 Msa0850600:intron 20.0%
!!! TTTATTTGTGAAGAAGATTT+TGG + chr5_4:40215666-40215685 Msa0850600:intron 20.0%
!! ATAGTAGTTAAGAAAAGAAA+AGG - chr5_4:40215761-40215780 None:intergenic 20.0%
!!! AACTACAAATTTTGATGTTT+TGG + chr5_4:40215891-40215910 Msa0850600:intron 20.0%
!!! ACTACAAATTTTGATGTTTT+GGG + chr5_4:40215892-40215911 Msa0850600:intron 20.0%
!!! TTGTTTATCTTTGAGTTTAA+AGG - chr5_4:40216011-40216030 None:intergenic 20.0%
!! TCAAATAAACCAATTTAAAC+AGG + chr5_4:40216265-40216284 Msa0850600:intron 20.0%
!! ATTGAATTTGAAGATTATAC+AGG - chr5_4:40216583-40216602 None:intergenic 20.0%
!!! AGGACATATTTTGAACAATT+TGG + chr5_4:40210450-40210469 Msa0850600:CDS 25.0%
! ATTATCACTGATAAGAATAC+AGG + chr5_4:40210492-40210511 Msa0850600:CDS 25.0%
! AAGAATACAGGAAAATCTAA+AGG + chr5_4:40210504-40210523 Msa0850600:CDS 25.0%
! CAATGAAATTAATTACCTCT+TGG - chr5_4:40210757-40210776 None:intergenic 25.0%
! TCAAATAGATCGATTATTGT+GGG - chr5_4:40210850-40210869 None:intergenic 25.0%
! ATATCACCATAAAAATTAGG+TGG + chr5_4:40210988-40211007 Msa0850600:intron 25.0%
! ATTTACCCATGTTATGTAAA+TGG + chr5_4:40211476-40211495 Msa0850600:intron 25.0%
! AGTTACCATTTACATAACAT+GGG - chr5_4:40211484-40211503 None:intergenic 25.0%
! CAGTTATCTAATTAATACCA+TGG - chr5_4:40211532-40211551 None:intergenic 25.0%
! ATGATATGAAATGATATGTG+AGG - chr5_4:40211641-40211660 None:intergenic 25.0%
! CATGATGATTTAAAAGAGTA+AGG - chr5_4:40211703-40211722 None:intergenic 25.0%
!! TTTAGAGTAAGGTTACATAA+GGG - chr5_4:40211762-40211781 None:intergenic 25.0%
!!! TTTTAGAGTAAGGTTACATA+AGG - chr5_4:40211763-40211782 None:intergenic 25.0%
! GCAACTTCTTATAATACATA+TGG - chr5_4:40211834-40211853 None:intergenic 25.0%
!!! ATGATGATGTGTTTGTTTTA+GGG + chr5_4:40211863-40211882 Msa0850600:intron 25.0%
!!! AATTTTGTGGAATTTGAGTT+TGG + chr5_4:40211933-40211952 Msa0850600:intron 25.0%
! TCAATAAAAAATGTAGTCCA+CGG + chr5_4:40212277-40212296 Msa0850600:intron 25.0%
! TAGGTTAAACTTTCATAATG+TGG + chr5_4:40212581-40212600 Msa0850600:intron 25.0%
! GACATTATATCGAATAAGAT+TGG + chr5_4:40212653-40212672 Msa0850600:intron 25.0%
! ATACAAGTCCTACATTAAAA+AGG + chr5_4:40212791-40212810 Msa0850600:intron 25.0%
!!! GTATTGTGTATTGATTATGT+TGG - chr5_4:40213101-40213120 None:intergenic 25.0%
! ACATTATTAACTTTCTTGCA+TGG - chr5_4:40213153-40213172 None:intergenic 25.0%
! ACATATATATGAAGTCTCAT+GGG - chr5_4:40213216-40213235 None:intergenic 25.0%
! GTCATAATCAATTCAATCTT+AGG + chr5_4:40213389-40213408 Msa0850600:intron 25.0%
!!! TAGTACAATTTCTTGTTTTG+TGG - chr5_4:40213440-40213459 None:intergenic 25.0%
!!! TATAGTGAAGTTAATTTGTG+AGG - chr5_4:40213576-40213595 None:intergenic 25.0%
! CAATACTATCAACAACTTTA+TGG + chr5_4:40213932-40213951 Msa0850600:CDS 25.0%
! AATTTGAAAAGATTAAAGGG+TGG - chr5_4:40214222-40214241 None:intergenic 25.0%
!! AGTGTCAATTCAACTTTTTA+TGG - chr5_4:40214249-40214268 None:intergenic 25.0%
!!! GTTTTTTAGTTATAAGTCAG+TGG - chr5_4:40214499-40214518 None:intergenic 25.0%
! ACTTATAACTAAAAAACCGA+CGG + chr5_4:40214502-40214521 Msa0850600:intron 25.0%
!!! TTAACTACCGTAGAATTTTT+TGG + chr5_4:40214528-40214547 Msa0850600:intron 25.0%
! GAAATGACCAAAAAATTCTA+CGG - chr5_4:40214538-40214557 None:intergenic 25.0%
!!! TATGATTTTGCTATAACATG+TGG + chr5_4:40214795-40214814 Msa0850600:intron 25.0%
! TTAACCGTATTATGTATGTA+TGG + chr5_4:40214878-40214897 Msa0850600:intron 25.0%
! TAACCGTATTATGTATGTAT+GGG + chr5_4:40214879-40214898 Msa0850600:intron 25.0%
! AAAATGAGAAAATGCAAAGT+GGG - chr5_4:40215049-40215068 None:intergenic 25.0%
! TAAAATGAGAAAATGCAAAG+TGG - chr5_4:40215050-40215069 None:intergenic 25.0%
! ATGAAATGAATTTGTAGGTT+GGG - chr5_4:40215080-40215099 None:intergenic 25.0%
! AGTACATGAAATGAATTTGT+AGG - chr5_4:40215085-40215104 None:intergenic 25.0%
!!! ATTTTCTCTTTGACTTCATT+AGG + chr5_4:40215157-40215176 Msa0850600:intron 25.0%
!!! TTTTCTCTTTGACTTCATTA+GGG + chr5_4:40215158-40215177 Msa0850600:intron 25.0%
! TATGACATAAGTTCAATTTC+AGG - chr5_4:40215250-40215269 None:intergenic 25.0%
! AAAAAATGTTCTTAAGACAC+TGG - chr5_4:40215373-40215392 None:intergenic 25.0%
! CCTTGAATAATAAGTTTCTA+TGG - chr5_4:40215471-40215490 None:intergenic 25.0%
! CCATAGAAACTTATTATTCA+AGG + chr5_4:40215468-40215487 Msa0850600:intron 25.0%
!! TTTTACGAAAATGCAAATTC+TGG + chr5_4:40215694-40215713 Msa0850600:intron 25.0%
! TAACTACTATTATCATGTGA+AGG + chr5_4:40215771-40215790 Msa0850600:intron 25.0%
!!! CTACAAATTTTGATGTTTTG+GGG + chr5_4:40215893-40215912 Msa0850600:intron 25.0%
! ACAACTTATAGACATATCAT+CGG + chr5_4:40216192-40216211 Msa0850600:intron 25.0%
! AAATATGTCAAACAAAGAAG+AGG - chr5_4:40216402-40216421 None:intergenic 25.0%
!! ATTATACAGGTTGAAACTAA+GGG - chr5_4:40216570-40216589 None:intergenic 25.0%
! TTGATTAATCAGTCCAAATT+TGG - chr5_4:40216700-40216719 None:intergenic 25.0%
AATATGATGATTATGCGGTA+TGG - chr5_4:40210048-40210067 None:intergenic 30.0%
ATTTAGTGATTCTCTCCTAT+TGG + chr5_4:40210107-40210126 Msa0850600:five_prime_UTR 30.0%
TTTAGTGATTCTCTCCTATT+GGG + chr5_4:40210108-40210127 Msa0850600:five_prime_UTR 30.0%
! TCTTTTGCTTCTTCTTCTTT+TGG - chr5_4:40210205-40210224 None:intergenic 30.0%
! ACATTCACTAAGGTTTTTGT+TGG + chr5_4:40210393-40210412 Msa0850600:CDS 30.0%
ACAGGAAAATCTAAAGGATA+CGG + chr5_4:40210510-40210529 Msa0850600:CDS 30.0%
AATTGTAACATTGCTTCTCT+TGG + chr5_4:40210712-40210731 Msa0850600:CDS 30.0%
TGAAATTAATTACCTCTTGG+TGG - chr5_4:40210754-40210773 None:intergenic 30.0%
GTCAAATAGATCGATTATTG+TGG - chr5_4:40210851-40210870 None:intergenic 30.0%
! TGATGACCACCTAATTTTTA+TGG - chr5_4:40210997-40211016 None:intergenic 30.0%
! AATTAGGTGGTCATCATTTT+AGG + chr5_4:40211001-40211020 Msa0850600:intron 30.0%
TATGTGGTCATTTATTACTG+TGG + chr5_4:40211443-40211462 Msa0850600:intron 30.0%
GAGTTACCATTTACATAACA+TGG - chr5_4:40211485-40211504 None:intergenic 30.0%
TTAGAGTAAGGTTACATAAG+GGG - chr5_4:40211761-40211780 None:intergenic 30.0%
!! CATGATGATGTGTTTGTTTT+AGG + chr5_4:40211862-40211881 Msa0850600:intron 30.0%
!! GATTCATAAGCTTGTTTTCA+GGG - chr5_4:40211969-40211988 None:intergenic 30.0%
!! TGATTCATAAGCTTGTTTTC+AGG - chr5_4:40211970-40211989 None:intergenic 30.0%
AGTCACATTACTATCTAATG+TGG + chr5_4:40212021-40212040 Msa0850600:intron 30.0%
GTCACATTACTATCTAATGT+GGG + chr5_4:40212022-40212041 Msa0850600:intron 30.0%
AAAAACTAGAGAAAGGTCTA+AGG + chr5_4:40212173-40212192 Msa0850600:intron 30.0%
GGAGATATGTAGATATATGT+AGG + chr5_4:40212194-40212213 Msa0850600:intron 30.0%
!!! ATTTTTTATTGACCATGCCA+TGG - chr5_4:40212269-40212288 None:intergenic 30.0%
TCAAATTAACCTACCTATAC+AGG - chr5_4:40212320-40212339 None:intergenic 30.0%
!! ATACAAAAGTACCAAGAGAT+GGG - chr5_4:40212373-40212392 None:intergenic 30.0%
TAAGACAACAATAACATTGC+TGG - chr5_4:40212423-40212442 None:intergenic 30.0%
TGAGAACTGTATAAATTGCA+TGG + chr5_4:40212443-40212462 Msa0850600:intron 30.0%
TTTCATAATGTGGTGAATCT+AGG + chr5_4:40212591-40212610 Msa0850600:intron 30.0%
ATAATGTCGGATACTAAATG+TGG - chr5_4:40212641-40212660 None:intergenic 30.0%
CCTTAGAATGGCATAATATT+GGG + chr5_4:40212764-40212783 Msa0850600:intron 30.0%
CTTAGAATGGCATAATATTG+GGG + chr5_4:40212765-40212784 Msa0850600:intron 30.0%
TTAGAATGGCATAATATTGG+GGG + chr5_4:40212766-40212785 Msa0850600:intron 30.0%
AAGTTAGTTCGGTAAGAATA+AGG + chr5_4:40213070-40213089 Msa0850600:intron 30.0%
CACATATATATGAAGTCTCA+TGG - chr5_4:40213217-40213236 None:intergenic 30.0%
GAGATGACATTATAATGGTA+TGG - chr5_4:40213258-40213277 None:intergenic 30.0%
TAAACCCATCAAGCATAAAA+TGG - chr5_4:40213311-40213330 None:intergenic 30.0%
ATGCCTTAGTTACATGAAAA+AGG + chr5_4:40213348-40213367 Msa0850600:intron 30.0%
!!! CAATTTCTTGTTTTGTGGTA+TGG - chr5_4:40213435-40213454 None:intergenic 30.0%
AGAGAAGCAACAACTTAAAA+TGG - chr5_4:40213626-40213645 None:intergenic 30.0%
GTTGAATGCAGTAATGTATT+TGG - chr5_4:40213655-40213674 None:intergenic 30.0%
TAGCTGCAAAAAAAGTTGAA+AGG - chr5_4:40213712-40213731 None:intergenic 30.0%
GATCTTAATTGATTATGGGA+GGG - chr5_4:40213779-40213798 None:intergenic 30.0%
TGATCTTAATTGATTATGGG+AGG - chr5_4:40213780-40213799 None:intergenic 30.0%
ATGGGTTCACCATATTATTA+TGG + chr5_4:40213971-40213990 Msa0850600:CDS 30.0%
CTTATTAATGGTTGTTGAAG+TGG - chr5_4:40214130-40214149 None:intergenic 30.0%
CACTTCAACAACCATTAATA+AGG + chr5_4:40214128-40214147 Msa0850600:CDS 30.0%
GTCAAATGTTAGATATACCA+AGG - chr5_4:40214281-40214300 None:intergenic 30.0%
! TGCTAAGTCTATGTGTTATT+AGG - chr5_4:40214465-40214484 None:intergenic 30.0%
AAGATGTTCATGATAACACA+TGG - chr5_4:40214560-40214579 None:intergenic 30.0%
TAGTGTATAACGTACAATGT+AGG + chr5_4:40214655-40214674 Msa0850600:intron 30.0%
ATGAATAGAGAGAATTAGAG+TGG + chr5_4:40214697-40214716 Msa0850600:intron 30.0%
TGAATAGAGAGAATTAGAGT+GGG + chr5_4:40214698-40214717 Msa0850600:intron 30.0%
TGACCCATACATACATAATA+CGG - chr5_4:40214885-40214904 None:intergenic 30.0%
AAAGTAATAGTGAATGCATG+TGG + chr5_4:40214955-40214974 Msa0850600:intron 30.0%
! CTTTAAAGATCCAGTCAAAA+TGG + chr5_4:40215002-40215021 Msa0850600:intron 30.0%
CATGAAATGAATTTGTAGGT+TGG - chr5_4:40215081-40215100 None:intergenic 30.0%
! ACAAATGGTGTTAAGAGATT+CGG - chr5_4:40215299-40215318 None:intergenic 30.0%
AATGCTAATAAGTTGTCCTA+GGG - chr5_4:40215507-40215526 None:intergenic 30.0%
AAATGCTAATAAGTTGTCCT+AGG - chr5_4:40215508-40215527 None:intergenic 30.0%
AGAACTAGATTAACCTCTAA+TGG + chr5_4:40215587-40215606 Msa0850600:intron 30.0%
TAATAGAGTGTGAGATGATA+TGG - chr5_4:40215865-40215884 None:intergenic 30.0%
TGCAATTTGGATGTCTTAAT+TGG - chr5_4:40215930-40215949 None:intergenic 30.0%
ATTTATATAAGCTCTCGATC+AGG + chr5_4:40216217-40216236 Msa0850600:intron 30.0%
! ATCTGGAGTAGTTATAACTT+CGG + chr5_4:40216492-40216511 Msa0850600:CDS 30.0%
! TTATACAGGTTGAAACTAAG+GGG - chr5_4:40216569-40216588 None:intergenic 30.0%
! GATTATACAGGTTGAAACTA+AGG - chr5_4:40216571-40216590 None:intergenic 30.0%
TTAAGAGAAAAGAGAGAGAG+AGG - chr5_4:40210086-40210105 None:intergenic 35.0%
! CTCTTTCTTCTTTTCCCAAT+AGG - chr5_4:40210125-40210144 None:intergenic 35.0%
CTATTGGGAAAAGAAGAAAG+AGG + chr5_4:40210123-40210142 Msa0850600:five_prime_UTR 35.0%
!! AAGAAAGAGGTGTTGTTGAA+TGG + chr5_4:40210136-40210155 Msa0850600:five_prime_UTR 35.0%
TGGGGTTGAACAACAAAAAA+GGG + chr5_4:40210159-40210178 Msa0850600:five_prime_UTR 35.0%
ATCAAGTGTACTACTACTCT+TGG - chr5_4:40210265-40210284 None:intergenic 35.0%
CCAAATTGTGATCGATAATG+TGG - chr5_4:40210366-40210385 None:intergenic 35.0%
CCACATTATCGATCACAATT+TGG + chr5_4:40210363-40210382 Msa0850600:CDS 35.0%
! TTCACTAAGGTTTTTGTTGG+AGG + chr5_4:40210396-40210415 Msa0850600:CDS 35.0%
AAACTCCAACTGATGAAATG+AGG + chr5_4:40210430-40210449 Msa0850600:CDS 35.0%
TATGTCCTCATTTCATCAGT+TGG - chr5_4:40210438-40210457 None:intergenic 35.0%
ATAGATCGATTATTGTGGGA+CGG - chr5_4:40210846-40210865 None:intergenic 35.0%
GTAACTCATAGTCAGTCAAA+GGG + chr5_4:40211498-40211517 Msa0850600:intron 35.0%
TAACTCATAGTCAGTCAAAG+GGG + chr5_4:40211499-40211518 Msa0850600:intron 35.0%
ACAATGAGACCTACTGTAAT+TGG - chr5_4:40211606-40211625 None:intergenic 35.0%
TAGAGTAAGGTTACATAAGG+GGG - chr5_4:40211760-40211779 None:intergenic 35.0%
TGGATATGATCATCTATGCA+TGG - chr5_4:40211814-40211833 None:intergenic 35.0%
AGTAGTAGATATGTAGTCCA+TGG + chr5_4:40212249-40212268 Msa0850600:intron 35.0%
!! TACAAAAGTACCAAGAGATG+GGG - chr5_4:40212372-40212391 None:intergenic 35.0%
!! CATACAAAAGTACCAAGAGA+TGG - chr5_4:40212374-40212393 None:intergenic 35.0%
AGAGTTGAGTCTAGCATATT+AGG + chr5_4:40212562-40212581 Msa0850600:intron 35.0%
GCCTTAGAATGGCATAATAT+TGG + chr5_4:40212763-40212782 Msa0850600:intron 35.0%
CCCAATATTATGCCATTCTA+AGG - chr5_4:40212767-40212786 None:intergenic 35.0%
TCCAATAATGTTAGTCCTGA+GGG + chr5_4:40212948-40212967 Msa0850600:intron 35.0%
TGGTCGAGATGACATTATAA+TGG - chr5_4:40213263-40213282 None:intergenic 35.0%
! TCCTTCCATTTTATGCTTGA+TGG + chr5_4:40213303-40213322 Msa0850600:intron 35.0%
! CCTTCCATTTTATGCTTGAT+GGG + chr5_4:40213304-40213323 Msa0850600:intron 35.0%
!! CCTCCTTTTTCATGTAACTA+AGG - chr5_4:40213354-40213373 None:intergenic 35.0%
CCTTAGTTACATGAAAAAGG+AGG + chr5_4:40213351-40213370 Msa0850600:intron 35.0%
ATTATGACTCACTTCAGTGA+TGG - chr5_4:40213377-40213396 None:intergenic 35.0%
! ATGCTTCTAATTTTTCTCGC+CGG + chr5_4:40213545-40213564 Msa0850600:intron 35.0%
!! GTTAATTTGTGAGGTGTTTC+CGG - chr5_4:40213567-40213586 None:intergenic 35.0%
ATGGTAGAGTTCTATTGTTG+TGG - chr5_4:40213607-40213626 None:intergenic 35.0%
TGTAGTAGGGTAGTATAGAT+AGG - chr5_4:40214071-40214090 None:intergenic 35.0%
AAAGATTACCACTAGGAGAA+GGG - chr5_4:40214168-40214187 None:intergenic 35.0%
AGGATAGAAAGATTACCACT+AGG - chr5_4:40214175-40214194 None:intergenic 35.0%
TTGACACTGATATTCAACCT+TGG + chr5_4:40214261-40214280 Msa0850600:intron 35.0%
AAGTAAGCGTCATTTGTGAT+TGG + chr5_4:40214590-40214609 Msa0850600:intron 35.0%
GAATAGAGAGAATTAGAGTG+GGG + chr5_4:40214699-40214718 Msa0850600:intron 35.0%
TTAGAGTGGGGTAAAAAGAA+AGG + chr5_4:40214711-40214730 Msa0850600:intron 35.0%
TAGAGTGGGGTAAAAAGAAA+GGG + chr5_4:40214712-40214731 Msa0850600:intron 35.0%
!! AAAGCAAAGACCATTTTGAC+TGG - chr5_4:40215015-40215034 None:intergenic 35.0%
GAATTTGTATTCACAGAAGG+AGG - chr5_4:40215618-40215637 None:intergenic 35.0%
GCAGAATTTGTATTCACAGA+AGG - chr5_4:40215621-40215640 None:intergenic 35.0%
AGGTGAGTCAAAAAGGAAAT+AGG + chr5_4:40215791-40215810 Msa0850600:intron 35.0%
AGATCATATCGACAAGTTCA+TGG - chr5_4:40215953-40215972 None:intergenic 35.0%
GGACTTTCACCTGTTTAAAT+TGG - chr5_4:40216277-40216296 None:intergenic 35.0%
TCGGAAAGTTCAAATACTCA+AGG + chr5_4:40216511-40216530 Msa0850600:CDS 35.0%
CGGAAAGTTCAAATACTCAA+GGG + chr5_4:40216512-40216531 Msa0850600:CDS 35.0%
! TATACAGGTTGAAACTAAGG+GGG - chr5_4:40216568-40216587 None:intergenic 35.0%
! ATGACTTGTGTTCTTCACTA+TGG + chr5_4:40216670-40216689 Msa0850600:three_prime_UTR 35.0%
TCACTATGGCATTCCAAATT+TGG + chr5_4:40216684-40216703 Msa0850600:three_prime_UTR 35.0%
GGACTGATTAATCAACTTCA+TGG + chr5_4:40216705-40216724 Msa0850600:three_prime_UTR 35.0%
GCAAACACTAATATGCTTGC+TGG - chr5_4:40209877-40209896 None:intergenic 40.0%
ATAGAGAGAGAAGAGAGTAG+TGG - chr5_4:40209940-40209959 None:intergenic 40.0%
GATTATGCGGTATGGTTGTT+TGG - chr5_4:40210040-40210059 None:intergenic 40.0%
!! AAAGAGGTGTTGTTGAATGG+TGG + chr5_4:40210139-40210158 Msa0850600:five_prime_UTR 40.0%
!! AAGAGGTGTTGTTGAATGGT+GGG + chr5_4:40210140-40210159 Msa0850600:five_prime_UTR 40.0%
GTGGGGTTGAACAACAAAAA+AGG + chr5_4:40210158-40210177 Msa0850600:five_prime_UTR 40.0%
TGGAGACACAACATTCACTA+AGG + chr5_4:40210383-40210402 Msa0850600:CDS 40.0%
!!! TTTTTGTTGGAGGACTAGCT+TGG + chr5_4:40210406-40210425 Msa0850600:CDS 40.0%
!!! TTTTGTTGGAGGACTAGCTT+GGG + chr5_4:40210407-40210426 Msa0850600:CDS 40.0%
TGATCCAGAATCAGCTAGAA+GGG + chr5_4:40210648-40210667 Msa0850600:CDS 40.0%
CTCTTCTTCCATCAATTACC+GGG - chr5_4:40210690-40210709 None:intergenic 40.0%
GCTCTTCTTCCATCAATTAC+CGG - chr5_4:40210691-40210710 None:intergenic 40.0%
!! TAATTACCTCTTGGTGGTGA+TGG - chr5_4:40210748-40210767 None:intergenic 40.0%
TAGATCGATTATTGTGGGAC+GGG - chr5_4:40210845-40210864 None:intergenic 40.0%
GGTTGTAATGTAATGCTGCA+GGG + chr5_4:40211270-40211289 Msa0850600:intron 40.0%
ACATAGCTAACTTACCCGTA+TGG - chr5_4:40211428-40211447 None:intergenic 40.0%
ATACGGGTAAGTTAGCTATG+TGG + chr5_4:40211427-40211446 Msa0850600:intron 40.0%
GGTAACTCATAGTCAGTCAA+AGG + chr5_4:40211497-40211516 Msa0850600:intron 40.0%
TGAGACCTACTGTAATTGGA+GGG - chr5_4:40211602-40211621 None:intergenic 40.0%
ATGAGACCTACTGTAATTGG+AGG - chr5_4:40211603-40211622 None:intergenic 40.0%
GAGTAAGGCAGAACAAAGTT+TGG - chr5_4:40211688-40211707 None:intergenic 40.0%
AGAGTAAGGTTACATAAGGG+GGG - chr5_4:40211759-40211778 None:intergenic 40.0%
TAGATATGTAGTCCATGGCA+TGG + chr5_4:40212254-40212273 Msa0850600:intron 40.0%
TGATAAAATCCCCCATCTCT+TGG + chr5_4:40212359-40212378 Msa0850600:intron 40.0%
!! ACAAAAGTACCAAGAGATGG+GGG - chr5_4:40212371-40212390 None:intergenic 40.0%
CTGGTGAGAAAATGACTTGA+TGG - chr5_4:40212404-40212423 None:intergenic 40.0%
ATGCTAGACTCAACTCTTGT+AGG - chr5_4:40212559-40212578 None:intergenic 40.0%
GGTGAATCTAGGTTCAATCT+AGG + chr5_4:40212602-40212621 Msa0850600:intron 40.0%
TGTTCTTAAGGGCCTTAGAA+TGG + chr5_4:40212752-40212771 Msa0850600:intron 40.0%
GTCCAATAATGTTAGTCCTG+AGG + chr5_4:40212947-40212966 Msa0850600:intron 40.0%
CCAATAATGTTAGTCCTGAG+GGG + chr5_4:40212949-40212968 Msa0850600:intron 40.0%
!!! TTTTTTCCAATAGACCCCTC+AGG - chr5_4:40212966-40212985 None:intergenic 40.0%
CCCATCAAGCATAAAATGGA+AGG - chr5_4:40213307-40213326 None:intergenic 40.0%
!! ATAGCTTTTGGTTGTCGTGT+GGG - chr5_4:40213512-40213531 None:intergenic 40.0%
!! AATAGCTTTTGGTTGTCGTG+TGG - chr5_4:40213513-40213532 None:intergenic 40.0%
! ATTGTGCTTGCTGAATCTGT+GGG - chr5_4:40213916-40213935 None:intergenic 40.0%
! TATTGTGCTTGCTGAATCTG+TGG - chr5_4:40213917-40213936 None:intergenic 40.0%
TGGACCATCATCTTCAACAA+TGG + chr5_4:40213952-40213971 Msa0850600:CDS 40.0%
GGACCATCATCTTCAACAAT+GGG + chr5_4:40213953-40213972 Msa0850600:CDS 40.0%
GAACCCATTGTTGAAGATGA+TGG - chr5_4:40213959-40213978 None:intergenic 40.0%
GTAGGGTAGTATAGATAGGA+TGG - chr5_4:40214067-40214086 None:intergenic 40.0%
ATACTACCCTACTACACCAA+TGG + chr5_4:40214075-40214094 Msa0850600:CDS 40.0%
! GGAGAAGGTTGCCTTATTAA+TGG - chr5_4:40214142-40214161 None:intergenic 40.0%
AAGATTACCACTAGGAGAAG+GGG - chr5_4:40214167-40214186 None:intergenic 40.0%
GAAAGATTACCACTAGGAGA+AGG - chr5_4:40214169-40214188 None:intergenic 40.0%
AGAGTGGGGTAAAAAGAAAG+GGG + chr5_4:40214713-40214732 Msa0850600:intron 40.0%
TTGCTATAACATGTGGACAC+AGG + chr5_4:40214802-40214821 Msa0850600:intron 40.0%
TGCTATAACATGTGGACACA+GGG + chr5_4:40214803-40214822 Msa0850600:intron 40.0%
!! GGTCTTTGCTTTTCATGCAT+TGG + chr5_4:40215023-40215042 Msa0850600:intron 40.0%
CATGTGAAGGTGAGTCAAAA+AGG + chr5_4:40215784-40215803 Msa0850600:intron 40.0%
GACAAGTTCATGGTGCAATT+TGG - chr5_4:40215943-40215962 None:intergenic 40.0%
! ATACAGGTTGAAACTAAGGG+GGG - chr5_4:40216567-40216586 None:intergenic 40.0%
AGTGAAGAACACAAGTCATG+TGG - chr5_4:40216669-40216688 None:intergenic 40.0%
AGAGAAGGAGGAGAAGCTAA+TGG - chr5_4:40209848-40209867 None:intergenic 45.0%
GAGAAAAGAGAGAGAGAGGT+GGG - chr5_4:40210082-40210101 None:intergenic 45.0%
AGAGAAAAGAGAGAGAGAGG+TGG - chr5_4:40210083-40210102 None:intergenic 45.0%
!! AGAGGTGTTGTTGAATGGTG+GGG + chr5_4:40210141-40210160 Msa0850600:five_prime_UTR 45.0%
GTGATCCAGAATCAGCTAGA+AGG + chr5_4:40210647-40210666 Msa0850600:CDS 45.0%
GATCCAAACCCGGTAATTGA+TGG + chr5_4:40210679-40210698 Msa0850600:CDS 45.0%
CTTCCATCAATTACCGGGTT+TGG - chr5_4:40210685-40210704 None:intergenic 45.0%
GGGTTGTAATGTAATGCTGC+AGG + chr5_4:40211269-40211288 Msa0850600:intron 45.0%
TGTAATGTAATGCTGCAGGG+AGG + chr5_4:40211273-40211292 Msa0850600:intron 45.0%
GTAATGTAATGCTGCAGGGA+GGG + chr5_4:40211274-40211293 Msa0850600:intron 45.0%
TAATGTAATGCTGCAGGGAG+GGG + chr5_4:40211275-40211294 Msa0850600:intron 45.0%
CCAGTGATGTACCAACCATA+CGG + chr5_4:40211410-40211429 Msa0850600:CDS 45.0%
CAGTGATGTACCAACCATAC+GGG + chr5_4:40211411-40211430 Msa0850600:CDS 45.0%
AGCTAACTTACCCGTATGGT+TGG - chr5_4:40211424-40211443 None:intergenic 45.0%
! ATAGTCAGTCAAAGGGGTAC+TGG + chr5_4:40211505-40211524 Msa0850600:intron 45.0%
AGACCTACTGTAATTGGAGG+GGG - chr5_4:40211600-40211619 None:intergenic 45.0%
GAGACCTACTGTAATTGGAG+GGG - chr5_4:40211601-40211620 None:intergenic 45.0%
!!! GCTTGTTTTCAGGGTTAGCT+AGG - chr5_4:40211960-40211979 None:intergenic 45.0%
TAGAAAGGGGGGCTATAATG+TGG + chr5_4:40212118-40212137 Msa0850600:intron 45.0%
CACATGTAGTGGTCCTGTAT+AGG + chr5_4:40212304-40212323 Msa0850600:intron 45.0%
TGTAGTGGTCCTGTATAGGT+AGG + chr5_4:40212308-40212327 Msa0850600:intron 45.0%
CCCCTCAGGACTAACATTAT+TGG - chr5_4:40212952-40212971 None:intergenic 45.0%
!! TAGCTTTTGGTTGTCGTGTG+GGG - chr5_4:40213511-40213530 None:intergenic 45.0%
! GGTGTTGAAAATGTACCCCT+TGG - chr5_4:40214019-40214038 None:intergenic 45.0%
AGCTTGTATGCGATGTGGTT+GGG - chr5_4:40214041-40214060 None:intergenic 45.0%
TACCCTACTACACCAATGGA+AGG + chr5_4:40214079-40214098 Msa0850600:CDS 45.0%
CTCCTTCCATTGGTGTAGTA+GGG - chr5_4:40214084-40214103 None:intergenic 45.0%
GAGAAAGTTGCTCCTTCCAT+TGG - chr5_4:40214094-40214113 None:intergenic 45.0%
CTACGGTAGTTAACTACCGT+CGG - chr5_4:40214521-40214540 None:intergenic 45.0%
GAGTGGGGTAAAAAGAAAGG+GGG + chr5_4:40214714-40214733 Msa0850600:intron 45.0%
AGTGGGGTAAAAAGAAAGGG+GGG + chr5_4:40214715-40214734 Msa0850600:intron 45.0%
GCTATAACATGTGGACACAG+GGG + chr5_4:40214804-40214823 Msa0850600:intron 45.0%
AGCTCATTCACATGGGTCTT+GGG - chr5_4:40214843-40214862 None:intergenic 45.0%
CCAAGACAGCTCATTCACAT+GGG - chr5_4:40214850-40214869 None:intergenic 45.0%
ACCAAGACAGCTCATTCACA+TGG - chr5_4:40214851-40214870 None:intergenic 45.0%
GCATGTGGTTTCTGTATGCA+TGG + chr5_4:40214970-40214989 Msa0850600:intron 45.0%
TGTGGTTTCTGTATGCATGG+TGG + chr5_4:40214973-40214992 Msa0850600:intron 45.0%
AGGTACTTAAATCGTGCCCT+AGG + chr5_4:40215488-40215507 Msa0850600:intron 45.0%
GAAGGAGGAGAAACCATTAG+AGG - chr5_4:40215603-40215622 None:intergenic 45.0%
! TACAGGTTGAAACTAAGGGG+GGG - chr5_4:40216566-40216585 None:intergenic 45.0%
!! TTATATACTATTTATAATTT+CGG + chr5_4:40210819-40210838 Msa0850600:intron 5.0%
!!! TATTTTTTTTTTAAATAGAT+CGG + chr5_4:40211029-40211048 Msa0850600:intron 5.0%
!! ACTAAATATATAAAATTTAT+TGG + chr5_4:40212887-40212906 Msa0850600:intron 5.0%
!!! TTTTTATTTATTTGTTAAAT+AGG + chr5_4:40215814-40215833 Msa0850600:intron 5.0%
!!! TTTTATTTATTTGTTAAATA+GGG + chr5_4:40215815-40215834 Msa0850600:intron 5.0%
!! TTTAGAAAATAATATTAAAT+AGG - chr5_4:40216308-40216327 None:intergenic 5.0%
GCTTCTCCTCCTTCTCTCTT+TGG + chr5_4:40209851-40209870 Msa0850600:five_prime_UTR 50.0%
GAGAGAGAAGAGAGTAGTGG+AGG - chr5_4:40209937-40209956 None:intergenic 50.0%
AAGAGAGAGAGAGGTGGGTA+TGG - chr5_4:40210077-40210096 None:intergenic 50.0%
! CAAGCCCTTCTAGCTGATTC+TGG - chr5_4:40210655-40210674 None:intergenic 50.0%
! GGAGGGGTACATATCAAGGT+GGG + chr5_4:40211291-40211310 Msa0850600:CDS 50.0%
! GAGGGGTACATATCAAGGTG+GGG + chr5_4:40211292-40211311 Msa0850600:CDS 50.0%
! AGGGGTACATATCAAGGTGG+GGG + chr5_4:40211293-40211312 Msa0850600:CDS 50.0%
TACATATCAAGGTGGGGGTG+TGG + chr5_4:40211298-40211317 Msa0850600:CDS 50.0%
! ACATATCAAGGTGGGGGTGT+GGG + chr5_4:40211299-40211318 Msa0850600:CDS 50.0%
! CCGTATGGTTGGTACATCAC+TGG - chr5_4:40211413-40211432 None:intergenic 50.0%
GGGAGCAGTCAAGAGACATA+TGG - chr5_4:40211580-40211599 None:intergenic 50.0%
AAAGGGGGGCTATAATGTGG+TGG + chr5_4:40212121-40212140 Msa0850600:intron 50.0%
AAGGGGGGCTATAATGTGGT+GGG + chr5_4:40212122-40212141 Msa0850600:intron 50.0%
TCCACGGCAAACACATGTAG+TGG + chr5_4:40212293-40212312 Msa0850600:intron 50.0%
ACCACTACATGTGTTTGCCG+TGG - chr5_4:40212297-40212316 None:intergenic 50.0%
GTTAGTCCTGAGGGGTCTAT+TGG + chr5_4:40212957-40212976 Msa0850600:intron 50.0%
! CGTATTCAGGAGTGTAGGTG+GGG - chr5_4:40213735-40213754 None:intergenic 50.0%
! CCGTATTCAGGAGTGTAGGT+GGG - chr5_4:40213736-40213755 None:intergenic 50.0%
CCCACCTACACTCCTGAATA+CGG + chr5_4:40213733-40213752 Msa0850600:CDS 50.0%
CCACCTACACTCCTGAATAC+GGG + chr5_4:40213734-40213753 Msa0850600:CDS 50.0%
! GTACCCGTATTCAGGAGTGT+AGG - chr5_4:40213740-40213759 None:intergenic 50.0%
!! ACTTGAGGGTACCCGTATTC+AGG - chr5_4:40213748-40213767 None:intergenic 50.0%
GGAGGGAGATGCTTACTTGA+GGG - chr5_4:40213762-40213781 None:intergenic 50.0%
TATGCAAGCAGCAGCACCAA+GGG + chr5_4:40214000-40214019 Msa0850600:CDS 50.0%
GCTTGTATGCGATGTGGTTG+GGG - chr5_4:40214040-40214059 None:intergenic 50.0%
CAGCTTGTATGCGATGTGGT+TGG - chr5_4:40214042-40214061 None:intergenic 50.0%
CAACCACATCGCATACAAGC+TGG + chr5_4:40214040-40214059 Msa0850600:CDS 50.0%
GCTCCTTCCATTGGTGTAGT+AGG - chr5_4:40214085-40214104 None:intergenic 50.0%
TTACCACTAGGAGAAGGGGT+AGG - chr5_4:40214163-40214182 None:intergenic 50.0%
CAGCTCATTCACATGGGTCT+TGG - chr5_4:40214844-40214863 None:intergenic 50.0%
CCCATGTGAATGAGCTGTCT+TGG + chr5_4:40214847-40214866 Msa0850600:intron 50.0%
TGAGAGAGAGAGAGTGAGAG+AGG + chr5_4:40214906-40214925 Msa0850600:intron 50.0%
GAGAGAGAGAGAGTGAGAGA+GGG + chr5_4:40214907-40214926 Msa0850600:intron 50.0%
ACCTCATCAGAGACAGCATC+TGG + chr5_4:40216475-40216494 Msa0850600:CDS 50.0%
TCCAGATGCTGTCTCTGATG+AGG - chr5_4:40216479-40216498 None:intergenic 50.0%
TGCTGGCCAAAGAGAGAAGG+AGG - chr5_4:40209860-40209879 None:intergenic 55.0%
! GCTTGCTGGCCAAAGAGAGA+AGG - chr5_4:40209863-40209882 None:intergenic 55.0%
! GGCTTGTGCTGATCCAAACC+CGG + chr5_4:40210669-40210688 Msa0850600:CDS 55.0%
!! CCTCTTGGTGGTGATGGTCT+AGG - chr5_4:40210742-40210761 None:intergenic 55.0%
CCTAGACCATCACCACCAAG+AGG + chr5_4:40210739-40210758 Msa0850600:CDS 55.0%
! GCAGGGAGGGGTACATATCA+AGG + chr5_4:40211287-40211306 Msa0850600:intron 55.0%
! GGGAGGGGTACATATCAAGG+TGG + chr5_4:40211290-40211309 Msa0850600:intron 55.0%
! CATATCAAGGTGGGGGTGTG+GGG + chr5_4:40211300-40211319 Msa0850600:CDS 55.0%
! GTTGCTCCTCCTGCCATTTG+TGG - chr5_4:40211383-40211402 None:intergenic 55.0%
!! GTCAAAGGGGTACTGGTCCA+TGG + chr5_4:40211512-40211531 Msa0850600:intron 55.0%
GCTCCCCCTCCAATTACAGT+AGG + chr5_4:40211594-40211613 Msa0850600:intron 55.0%
! CCCGTATTCAGGAGTGTAGG+TGG - chr5_4:40213737-40213756 None:intergenic 55.0%
GGGAGGGAGATGCTTACTTG+AGG - chr5_4:40213763-40213782 None:intergenic 55.0%
CTATGCAAGCAGCAGCACCA+AGG + chr5_4:40213999-40214018 Msa0850600:CDS 55.0%
ATGCAAGCAGCAGCACCAAG+GGG + chr5_4:40214001-40214020 Msa0850600:CDS 55.0%
GGTCCAGCTTGTATGCGATG+TGG - chr5_4:40214046-40214065 None:intergenic 55.0%
CTAGGAGAAGGGGTAGGAGA+AGG - chr5_4:40214157-40214176 None:intergenic 55.0%
TCTCCTACCCCTTCTCCTAG+TGG + chr5_4:40214157-40214176 Msa0850600:CDS 55.0%
TGGGTCTTGGGTTACCCATG+TGG - chr5_4:40214831-40214850 None:intergenic 55.0%
AGAGAGGGTCAGAGTGAGAG+AGG + chr5_4:40214922-40214941 Msa0850600:intron 55.0%
GAGAGGGTCAGAGTGAGAGA+GGG + chr5_4:40214923-40214942 Msa0850600:intron 55.0%
ATTTGTGGTGGCCCTCCTGC+CGG - chr5_4:40211368-40211387 None:intergenic 60.0%
! GCTCCTCCTGCCATTTGTGG+TGG - chr5_4:40211380-40211399 None:intergenic 60.0%
TGTGGACACAGGGGTCCACA+TGG + chr5_4:40214813-40214832 Msa0850600:intron 60.0%
GTGGACACAGGGGTCCACAT+GGG + chr5_4:40214814-40214833 Msa0850600:intron 60.0%
AGCACCAGGAGGAGCAGCAG+CGG + chr5_4:40211328-40211347 Msa0850600:CDS 65.0%
GGCAGGAGGGCCACCACAAA+TGG + chr5_4:40211367-40211386 Msa0850600:CDS 65.0%
GGAGGGCCACCACAAATGGC+AGG + chr5_4:40211371-40211390 Msa0850600:CDS 65.0%
GGGCCACCACAAATGGCAGG+AGG + chr5_4:40211374-40211393 Msa0850600:CDS 65.0%
! CAAGGTGGGGGTGTGGGGAC+AGG + chr5_4:40211305-40211324 Msa0850600:CDS 70.0%
!! GGTGTGGGGACAGGAGCACC+AGG + chr5_4:40211314-40211333 Msa0850600:CDS 70.0%
!! GTGGGGACAGGAGCACCAGG+AGG + chr5_4:40211317-40211336 Msa0850600:CDS 70.0%
TACGCCGCTGCTGCTCCTCC+TGG - chr5_4:40211335-40211354 None:intergenic 70.0%
GGAGGAGCAGCAGCGGCGTA+CGG + chr5_4:40211335-40211354 Msa0850600:CDS 70.0%
AGCGGCGTACGGCGGTGTTC+CGG + chr5_4:40211346-40211365 Msa0850600:CDS 70.0%
TACGGCGGTGTTCCGGCAGG+AGG + chr5_4:40211353-40211372 Msa0850600:CDS 70.0%
ACGGCGGTGTTCCGGCAGGA+GGG + chr5_4:40211354-40211373 Msa0850600:CDS 70.0%
GGAGCAGCAGCGGCGTACGG+CGG + chr5_4:40211338-40211357 Msa0850600:CDS 75.0%
GCGTACGGCGGTGTTCCGGC+AGG + chr5_4:40211350-40211369 Msa0850600:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 40209838 40216792 40209838 ID=Msa0850600;Name=Msa0850600
chr5_4 mRNA 40209838 40216792 40209838 ID=Msa0850600-mRNA-1;Parent=Msa0850600;Name=Msa0850600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=516|1|1|1|1|1|6|243|286
chr5_4 exon 40209838 40210536 40209838 ID=Msa0850600-mRNA-1:exon:12673;Parent=Msa0850600-mRNA-1
chr5_4 exon 40210637 40210760 40210637 ID=Msa0850600-mRNA-1:exon:12674;Parent=Msa0850600-mRNA-1
chr5_4 exon 40211291 40211432 40211291 ID=Msa0850600-mRNA-1:exon:12675;Parent=Msa0850600-mRNA-1
chr5_4 exon 40213729 40213765 40213729 ID=Msa0850600-mRNA-1:exon:12676;Parent=Msa0850600-mRNA-1
chr5_4 exon 40213899 40214178 40213899 ID=Msa0850600-mRNA-1:exon:12677;Parent=Msa0850600-mRNA-1
chr5_4 exon 40216455 40216792 40216455 ID=Msa0850600-mRNA-1:exon:12678;Parent=Msa0850600-mRNA-1
chr5_4 five_prime_UTR 40209838 40210353 40209838 ID=Msa0850600-mRNA-1:five_prime_utr;Parent=Msa0850600-mRNA-1
chr5_4 CDS 40210354 40210536 40210354 ID=Msa0850600-mRNA-1:cds;Parent=Msa0850600-mRNA-1
chr5_4 CDS 40210637 40210760 40210637 ID=Msa0850600-mRNA-1:cds;Parent=Msa0850600-mRNA-1
chr5_4 CDS 40211291 40211432 40211291 ID=Msa0850600-mRNA-1:cds;Parent=Msa0850600-mRNA-1
chr5_4 CDS 40213729 40213765 40213729 ID=Msa0850600-mRNA-1:cds;Parent=Msa0850600-mRNA-1
chr5_4 CDS 40213899 40214178 40213899 ID=Msa0850600-mRNA-1:cds;Parent=Msa0850600-mRNA-1
chr5_4 CDS 40216455 40216549 40216455 ID=Msa0850600-mRNA-1:cds;Parent=Msa0850600-mRNA-1
chr5_4 three_prime_UTR 40216550 40216792 40216550 ID=Msa0850600-mRNA-1:three_prime_utr;Parent=Msa0850600-mRNA-1
Gene Sequence

>Msa0850600

ATGGCTTATCCACATTATCGATCACAATTTGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGACTAGCTTGGGAAACTCCAACTGATGAAATGAGGACATATTTTGAACAATTTGGTGACATACTTGAAGCTGTCATTATCACTGATAAGAATACAGGAAAATCTAAAGGATACGGATTTGTAACATTTCGTGATCCAGAATCAGCTAGAAGGGCTTGTGCTGATCCAAACCCGGTAATTGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTTGGTCGTCCTAGACCATCACCACCAAGAGGGAGGGGTACATATCAAGGTGGGGGTGTGGGGACAGGAGCACCAGGAGGAGCAGCAGCGGCGTACGGCGGTGTTCCGGCAGGAGGGCCACCACAAATGGCAGGAGGAGCAACAGCAGCTCCAGTGATGTACCAACCATACGGCTACCCCACCTACACTCCTGAATACGGGTACCCTCAAGCTACAATGTATAACCCACAGATTCAGCAAGCACAATACTATCAACAACTTTATGGACCATCATCTTCAACAATGGGTTCACCATATTATTATGGCTATTCTATGCAAGCAGCAGCACCAAGGGGTACATTTTCAACACCCCAACCACATCGCATACAAGCTGGACCATCCTATCTATACTACCCTACTACACCAATGGAAGGAGCAACTTTCTCTGCTGCATATCGTCCACTTCAACAACCATTAATAAGGCAACCTTCTCCTACCCCTTCTCCTAGTGATTCACAGACTCAGCAACGTACCTCATCAGAGACAGCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAAGGGAAGAACAACAACTAA
Protein sequence

>Msa0850600

MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQGGGVGTGAPGGAAAAYGGVPAGGPPQMAGGATAAPVMYQPYGYPTYTPEYGYPQATMYNPQIQQAQYYQQLYGPSSSTMGSPYYYGYSMQAAAPRGTFSTPQPHRIQAGPSYLYYPTTPMEGATFSAAYRPLQQPLIRQPSPTPSPSDSQTQQRTSSETASGVVITSESSNTQGKNNN*