AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100040 MtrunA17_Chr1g0200071 99.736 379 1 0 1 379 1 379 0.0 784
Msa0100040 MtrunA17_Chr1g0200091 99.736 379 1 0 1 379 1 379 0.0 784
Msa0100040 MtrunA17_Chr1g0200121 99.472 379 2 0 1 379 1 379 0.0 783
Msa0100040 MtrunA17_Chr6g0458111 97.889 379 8 0 1 379 1 379 0.0 776
Msa0100040 MtrunA17_Chr6g0458091 97.889 379 8 0 1 379 1 379 0.0 776
Msa0100040 MtrunA17_Chr4g0005781 97.361 379 10 0 1 379 1 379 0.0 773
Msa0100040 MtrunA17_Chr1g0150331 97.500 360 6 1 1 357 1 360 0.0 720
Msa0100040 MtrunA17_Chr1g0193591 82.586 379 66 0 1 379 1 379 0.0 649
Msa0100040 MtrunA17_Chr1g0204031 82.322 379 62 3 1 379 1 374 0.0 640
Msa0100040 MtrunA17_Chr1g0156421 78.364 379 82 0 1 379 1 379 0.0 630
Msa0100040 MtrunA17_Chr8g0340771 79.528 381 76 1 1 379 1 381 0.0 613
Msa0100040 MtrunA17_Chr8g0336511 78.899 327 68 1 1 326 66 392 0.0 542
Msa0100040 MtrunA17_Chr1g0196251 70.027 377 85 2 4 379 5 354 0.0 540
Msa0100040 MtrunA17_Chr5g0415391 72.434 341 94 0 39 379 1 341 1.66e-180 508
Msa0100040 MtrunA17_Chr2g0319341 74.823 282 69 1 102 381 1 282 1.64e-154 442
Msa0100040 MtrunA17_Chr2g0298371 66.667 282 75 2 102 381 1 265 4.90e-133 383
Msa0100040 MtrunA17_Chr8g0340371 70.124 241 69 2 1 240 1 239 3.27e-119 345
Msa0100040 MtrunA17_Chr2g0318291 71.681 226 59 3 1 223 1 224 5.63e-113 328
Msa0100040 MtrunA17_Chr1g0204041 86.452 155 21 0 1 155 1 155 3.58e-91 271
Msa0100040 MtrunA17_Chr6g0483121 37.795 381 223 6 5 377 89 463 1.22e-83 263
Msa0100040 MtrunA17_Chr1g0210931 60.619 226 39 3 155 379 1 177 2.52e-82 252
Msa0100040 MtrunA17_Chr8g0392641 38.275 371 219 6 4 368 143 509 2.45e-80 256
Msa0100040 MtrunA17_Chr8g0380091 36.508 378 232 5 7 379 275 649 6.82e-80 259
Msa0100040 MtrunA17_Chr1g0156411 81.429 140 26 0 6 145 10 149 3.11e-79 240
Msa0100040 MtrunA17_Chr4g0026961 54.255 188 70 4 195 379 32 206 2.10e-56 184
Msa0100040 MtrunA17_Chr4g0026961 76.190 42 10 0 1 42 1 42 6.20e-13 67.8
Msa0100040 MtrunA17_Chr2g0318281 66.423 137 46 0 243 379 5 141 4.36e-54 178
Msa0100040 MtrunA17_Chr1g0200111 70.635 126 27 1 264 379 1 126 1.41e-52 172
Msa0100040 MtrunA17_Chr2g0298381 77.778 99 22 0 1 99 1 99 1.87e-48 159
Msa0100040 MtrunA17_Chr8g0341021 76.471 102 24 0 3 104 4 105 4.89e-48 158
Msa0100040 MtrunA17_Chr7g0259481 33.528 343 186 10 3 336 59 368 8.06e-44 157
Msa0100040 MtrunA17_Chr8g0340361 60.305 131 36 2 264 379 1 130 3.03e-42 146
Msa0100040 MtrunA17_Chr3g0116821 33.841 328 171 10 3 315 88 384 6.12e-39 145
Msa0100040 MtrunA17_Chr1g0211481 79.747 79 16 0 5 83 4 82 1.56e-36 128
Msa0100040 MtrunA17_Chr2g0319351 82.192 73 13 0 5 77 5 77 1.96e-35 124
Msa0100040 MtrunA17_Chr1g0200101 74.713 87 16 2 154 236 29 113 2.45e-35 125
Msa0100040 MtrunA17_Chr1g0200101 73.469 49 13 0 21 69 2 50 6.62e-17 76.3
Msa0100040 MtrunA17_Chr2g0287231 32.794 247 134 6 1 244 10 227 7.20e-32 120
Msa0100040 MtrunA17_Chr8g0341041 67.089 79 26 0 213 291 2 80 3.13e-28 108
Msa0100040 MtrunA17_Chr7g0261801 69.697 66 17 1 155 220 1 63 1.88e-24 95.9
Msa0100040 MtrunA17_Chr3g0130991 26.838 272 142 10 9 272 85 307 3.04e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100040 AT1G07920.1 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT1G07940.4 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT1G07940.1 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT1G07940.2 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT1G07940.3 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT5G60390.3 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT5G60390.1 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT5G60390.2 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT1G07930.1 97.098 379 11 0 1 379 1 379 0.0 769
Msa0100040 AT1G07930.2 98.431 255 4 0 1 255 1 255 0.0 527
Msa0100040 AT1G07930.2 91.837 49 4 0 331 379 254 302 1.06e-23 101
Msa0100040 AT5G10630.1 35.714 378 235 5 7 379 239 613 2.45e-80 259
Msa0100040 AT5G10630.5 35.714 378 235 5 7 379 240 614 2.50e-80 259
Msa0100040 AT5G10630.2 35.714 378 235 5 7 379 240 614 2.50e-80 259
Msa0100040 AT1G18070.1 37.037 378 230 5 5 377 99 473 4.44e-80 255
Msa0100040 AT1G18070.2 37.037 378 230 5 5 377 99 473 4.44e-80 255
Msa0100040 AT5G10630.3 35.714 378 235 5 7 379 310 684 1.31e-79 259
Msa0100040 AT5G10630.4 35.714 378 235 5 7 379 315 689 1.61e-79 259
Msa0100040 AT1G18070.3 36.247 389 229 6 5 377 99 484 5.56e-77 248
Msa0100040 AT4G02930.1 33.140 344 187 10 3 336 63 373 4.62e-42 153
Msa0100040 AT4G20360.1 34.472 322 173 7 3 313 75 369 6.67e-42 153
Msa0100040 AT4G20360.2 34.472 322 173 7 3 313 75 369 6.67e-42 153
Msa0100040 AT1G35550.1 80.000 45 9 0 335 379 1 45 8.31e-19 81.3
Msa0100040 AT2G31060.3 24.621 264 161 8 9 263 61 295 6.58e-12 67.4
Msa0100040 AT5G08650.2 26.766 269 146 10 9 272 88 310 1.17e-11 66.6
Msa0100040 AT5G08650.1 26.667 270 145 10 9 272 88 310 1.25e-11 66.6

Find 201 sgRNAs with CRISPR-Local

Find 641 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.129994 1_3:-6489257 None:intergenic
ACTTGGCAAGTCAGCACTTC+TGG 0.194270 1_3:-6483593 None:intergenic
TTGTAGTTTAAGTAGGATTA+TGG 0.234054 1_3:-6483079 None:intergenic
CTAGTCTGCTGATTTGGTTC+TGG 0.248115 1_3:+6489713 Msa0100040:three_prime_UTR
CACTTGGCCGTTTCGCTGTC+AGG 0.261906 1_3:+6489344 Msa0100040:three_prime_UTR
GTCTACAAGATTGGAGGAAT+TGG 0.281818 1_3:+6488843 Msa0100040:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1_3:+6488437 Msa0100040:CDS
TTCATTAAGAACATGATTAC+TGG 0.308905 1_3:+6488320 Msa0100040:CDS
TGTTAAGAACGTTGCTGTTA+AGG 0.312399 1_3:+6489019 Msa0100040:CDS
GTCGATCAAGAACCCAGTTC+TGG 0.317271 1_3:-6489615 None:intergenic
GCCTCTTAGGCTCGTTGATT+TGG 0.321386 1_3:-6488785 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 1_3:+6488047 Msa0100040:CDS
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1_3:-6488649 None:intergenic
TAGCAGCTAGTCTGCTGATT+TGG 0.343690 1_3:+6489707 Msa0100040:three_prime_UTR
GGTTCTTGATCGACGGTGGC+AGG 0.344123 1_3:+6489624 Msa0100040:three_prime_UTR
ACTAAGATTGACAGGCGTTC+TGG 0.356033 1_3:+6489215 Msa0100040:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.357372 1_3:-6489161 None:intergenic
CTATCCAAGGAAGTCTATTA+TGG 0.357641 1_3:+6489484 Msa0100040:three_prime_UTR
GCTCTCACTGAGGCTCTTCC+CGG 0.361996 1_3:+6488978 Msa0100040:CDS
CCACCTGCAAACACTATTGT+TGG 0.368742 1_3:-6481192 None:intergenic
ATTCCGTTTGTTCCCATCTC+TGG 0.374426 1_3:+6488684 Msa0100040:CDS
TGCAGGTGGTAAGGTGTTAT+TGG 0.377292 1_3:+6481206 Msa0100040:five_prime_UTR
ATACCTACCTTTCGAGTACT+TGG 0.383751 1_3:-6488601 None:intergenic
GTCATTGGCCATGTCGACTC+TGG 0.395247 1_3:+6488062 Msa0100040:CDS
GGTGCTAGAATCAAAATCTA+AGG 0.398400 1_3:-6481002 None:intergenic
TGAATGAGGAAAAGAATTCA+TGG 0.410946 1_3:-6480809 None:intergenic
GCAAAAGTGACAACCATTCC+AGG 0.418006 1_3:-6488906 None:intergenic
CTTGGCAAGTCAGCACTTCT+GGG 0.419073 1_3:-6483592 None:intergenic
GGCTTGTCGGAGGGCCTCTT+AGG 0.420350 1_3:-6488798 None:intergenic
CGTCCAACAATAGTGTTTGC+AGG 0.421803 1_3:+6481189 Msa0100040:five_prime_UTR
CTCCTTGGCAGGGTCATCCT+TGG 0.424157 1_3:-6489072 None:intergenic
ATGAATCACCCGGGCCAGAT+TGG 0.424580 1_3:+6489125 Msa0100040:CDS
CAAAATCAAATAGTTCTAAC+AGG 0.426152 1_3:-6489683 None:intergenic
AAGTTAGCAGCCTCCTTGGC+AGG 0.429289 1_3:-6489083 None:intergenic
AATCCTACTTAAACTACAAA+TGG 0.430854 1_3:+6483083 Msa0100040:five_prime_UTR
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1_3:+6488873 Msa0100040:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 1_3:+6488818 Msa0100040:CDS
TGGTAGTCGGAGGGGCTTGT+CGG 0.436561 1_3:-6488811 None:intergenic
AGGACAAATGGGTAAGGAAA+AGG 0.440646 1_3:+6488022 Msa0100040:exon
CACCCGGGCCAGATTGGAAA+TGG 0.442837 1_3:+6489131 Msa0100040:CDS
GGGCATAGCCATTTCCAATC+TGG 0.448022 1_3:-6489139 None:intergenic
CTTAATGAAATCCCTATGTC+CGG 0.451972 1_3:-6488306 None:intergenic
AGCTTCAAAACCACCGGTAG+TGG 0.453289 1_3:-6488381 None:intergenic
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1_3:-6488930 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1_3:+6488834 Msa0100040:CDS
TGCAAACACTATTGTTGGAC+GGG 0.458912 1_3:-6481187 None:intergenic
GGAAGTTCTTTAAGAAAACT+TGG 0.458999 1_3:-6483610 None:intergenic
GTACCATTTGTAGTTTAAGT+AGG 0.461147 1_3:-6483086 None:intergenic
AGTCTCAACCACCATGGGCT+TGG 0.462350 1_3:-6489305 None:intergenic
CATGTACAATGATTCTAACT+TGG 0.462424 1_3:+6481080 Msa0100040:five_prime_UTR
AGGAATTGGGACTGTGCCTG+TGG 0.463901 1_3:+6488857 Msa0100040:CDS
AGCGTTCATTCAAGTATGCT+TGG 0.463969 1_3:+6488180 Msa0100040:CDS
TCTACAAGATTGGAGGAATT+GGG 0.467601 1_3:+6488844 Msa0100040:CDS
ACCAAATCAACGAGCCTAAG+AGG 0.467614 1_3:+6488784 Msa0100040:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 1_3:-6489302 None:intergenic
GGATAATTAGAAATGACAAT+AGG 0.470370 1_3:-6480868 None:intergenic
TAGTCGGAGGGGCTTGTCGG+AGG 0.477669 1_3:-6488808 None:intergenic
TAGCCATTTCCAATCTGGCC+CGG 0.483094 1_3:-6489134 None:intergenic
ATAAAATCATTATTCGTTGA+GGG 0.483605 1_3:-6481023 None:intergenic
CTGATCATTGATTCCACTAC+CGG 0.486115 1_3:+6488368 Msa0100040:CDS
AGTATTGAGAGAAGTCATGA+GGG 0.490085 1_3:-6481127 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.490294 1_3:+6488181 Msa0100040:CDS
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1_3:+6488645 Msa0100040:CDS
AGTCGGAGGGGCTTGTCGGA+GGG 0.491386 1_3:-6488807 None:intergenic
CACAAATAGAAAATATGTCC+TGG 0.491414 1_3:-6480938 None:intergenic
TCGATCAAGAACCCAGTTCT+GGG 0.492942 1_3:-6489614 None:intergenic
AGCAAATTTGACAGCAATGT+GGG 0.494938 1_3:-6489183 None:intergenic
TGTAAAGTTAGCAGCCTCCT+TGG 0.496399 1_3:-6489087 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1_3:-6488697 None:intergenic
GTTCTTGATCGACGGTGGCA+GGG 0.497157 1_3:+6489625 Msa0100040:three_prime_UTR
ACTCAAATGAAAGTGGTTCA+AGG 0.498014 1_3:-6481305 None:intergenic
GGGAATCATCTTAATAATAC+CGG 0.498223 1_3:-6489281 None:intergenic
GGAATTGGGACTGTGCCTGT+GGG 0.501531 1_3:+6488858 Msa0100040:CDS
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1_3:+6488641 Msa0100040:CDS
TACAAATCTTGACTGGTACA+AGG 0.502738 1_3:+6488737 Msa0100040:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 1_3:+6489207 Msa0100040:CDS
GTCTGACAATTGATATATGT+TGG 0.505104 1_3:+6481326 Msa0100040:five_prime_UTR
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1_3:-6488929 None:intergenic
CAGAACAGCACAATCAGCTT+GGG 0.510396 1_3:-6488348 None:intergenic
AATAGTGTTTGCAGGTGGTA+AGG 0.514200 1_3:+6481197 Msa0100040:five_prime_UTR
TTAATGAAATCCCTATGTCC+GGG 0.515722 1_3:-6488305 None:intergenic
GAAGCTGGTATTTCAAAGGA+TGG 0.516473 1_3:+6488398 Msa0100040:CDS
ATTAAATCCCACATTGTCAC+CGG 0.519224 1_3:-6488997 None:intergenic
TCAGAACAGCACAATCAGCT+TGG 0.519259 1_3:-6488349 None:intergenic
AGGGTCATCCTTGGAGTTTG+AGG 0.522734 1_3:-6489063 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.523217 1_3:+6488837 Msa0100040:CDS
GAACTTCCGGAGAATGATGA+TGG 0.525494 1_3:+6483625 Msa0100040:five_prime_UTR
AATAAAATCATTATTCGTTG+AGG 0.527388 1_3:-6481024 None:intergenic
TTCTCTGAGTATCCTCCACT+TGG 0.530256 1_3:+6489328 Msa0100040:three_prime_UTR
AAGTATTGAGAGAAGTCATG+AGG 0.530410 1_3:-6481128 None:intergenic
TATCAAGGCTGTGGAGAAGA+AGG 0.530959 1_3:+6489396 Msa0100040:three_prime_UTR
CTCAAAGCTGAACGTGAAAG+AGG 0.531334 1_3:+6488215 Msa0100040:CDS
ATCACCATAATAGACTTCCT+TGG 0.531523 1_3:-6489488 None:intergenic
CAAGGAAGCGGTCGAGAACA+AGG 0.532372 1_3:-6480889 None:intergenic
ATCGAATATCTTCAAGGAAG+CGG 0.532472 1_3:-6480901 None:intergenic
GAAGAAGAAGTGAACCGTGC+AGG 0.532716 1_3:+6489456 Msa0100040:three_prime_UTR
TGAATGAGGAAAAGAGTTCA+CGG 0.532772 1_3:-6480842 None:intergenic
AGTCCAACAAAATCATTGCT+TGG 0.534995 1_3:+6483024 Msa0100040:five_prime_UTR
TCAAGGTCTTCAAAGCTCAA+TGG 0.536438 1_3:-6481288 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.536467 1_3:+6488063 Msa0100040:CDS
AAACCAGAGATGGGAACAAA+CGG 0.537656 1_3:-6488687 None:intergenic
TTCTTGAAGAATGGTGATGC+CGG 0.540625 1_3:+6489262 Msa0100040:exon
TTGTCAGACTCAAATGAAAG+TGG 0.541070 1_3:-6481312 None:intergenic
TGTGGCTGTTGGTGTTATCA+AGG 0.541484 1_3:+6489381 Msa0100040:three_prime_UTR
TGCACTGTCATCGATGCCCC+CGG 0.544770 1_3:+6488287 Msa0100040:CDS
TACCTACCTTTCGAGTACTT+GGG 0.545564 1_3:-6488600 None:intergenic
TCATTGTACATGAGCAAAAG+TGG 0.546765 1_3:-6481069 None:intergenic
CACTTGATCTACAAGCTTGG+AGG 0.548237 1_3:+6488104 Msa0100040:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.549740 1_3:-6489310 None:intergenic
GATTGACAGGCGTTCTGGAA+AGG 0.550491 1_3:+6489220 Msa0100040:CDS
TCTGACAATTGATATATGTT+GGG 0.551265 1_3:+6481327 Msa0100040:five_prime_UTR
GGCTCTTCCCGGTGACAATG+TGG 0.552654 1_3:+6488989 Msa0100040:CDS
TTGATAAGCGTGTGATTGAG+AGG 0.552905 1_3:+6488129 Msa0100040:CDS
GAACAAAAGTTGCGAGATGA+CGG 0.553852 1_3:-6489592 None:intergenic
TTTCGAGTACTTGGGTGTAG+TGG 0.555537 1_3:-6488592 None:intergenic
AGCAAAAGTGGTTGGCACAA+TGG 0.555759 1_3:-6481057 None:intergenic
CTGCAAACACTATTGTTGGA+CGG 0.556492 1_3:-6481188 None:intergenic
GGAGCCAAATTCTTGAAGAA+TGG 0.556704 1_3:+6489253 Msa0100040:exon
AGCCACACACAAGCTATTCA+AGG 0.556816 1_3:+6483648 Msa0100040:five_prime_UTR
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1_3:-6488873 None:intergenic
TCAAGAGCCTCAAGAAGGGT+TGG 0.557590 1_3:-6488762 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 1_3:-6489301 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1_3:-6488427 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.559985 1_3:-6489160 None:intergenic
GGTCACTTGATCTACAAGCT+TGG 0.563562 1_3:+6488101 Msa0100040:CDS
AGCCATTTCCAATCTGGCCC+GGG 0.563796 1_3:-6489133 None:intergenic
GTGGCTCCATCATCATTCTC+CGG 0.564113 1_3:-6483631 None:intergenic
AAGCTGGTATTTCAAAGGAT+GGG 0.564820 1_3:+6488399 Msa0100040:CDS
ACTTGGCCGTTTCGCTGTCA+GGG 0.565218 1_3:+6489345 Msa0100040:three_prime_UTR
ACAAATCTTGACTGGTACAA+GGG 0.566035 1_3:+6488738 Msa0100040:CDS
TTTGGTCAAGAGCCTCAAGA+AGG 0.569379 1_3:-6488767 None:intergenic
TCTGGGAAGTCAACCACCAC+CGG 0.571267 1_3:+6488080 Msa0100040:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1_3:-6488426 None:intergenic
AGTGATCATCATGAATCACC+CGG 0.573223 1_3:+6489115 Msa0100040:CDS
ACGGAAGAAGAAAGTGAATG+AGG 0.575491 1_3:-6480823 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 1_3:-6488820 None:intergenic
CTTGGATAGATCTTCCTGCA+CGG 0.581131 1_3:-6489470 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1_3:+6488888 Msa0100040:CDS
TAGGTATGAAGAAATTGTGA+AGG 0.588391 1_3:+6488617 Msa0100040:CDS
GCTCTTCCCGGTGACAATGT+GGG 0.588610 1_3:+6488990 Msa0100040:CDS
GCATATCCCTGACAGCGAAA+CGG 0.590157 1_3:-6489351 None:intergenic
GTAGATCAAGTGACCGGTGG+TGG 0.594900 1_3:-6488093 None:intergenic
TGTTGGTGTTATCAAGGCTG+TGG 0.597147 1_3:+6489387 Msa0100040:three_prime_UTR
TTGACTTCCCAGAGTCGACA+TGG 0.602118 1_3:-6488070 None:intergenic
ATGCGTCAAACTGTGGCTGT+TGG 0.604242 1_3:+6489370 Msa0100040:three_prime_UTR
AGAACTGGGTTCTTGATCGA+CGG 0.605712 1_3:+6489617 Msa0100040:three_prime_UTR
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1_3:-6488696 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 1_3:-6488819 None:intergenic
ATGACAATAGGAAATGAATG+AGG 0.610442 1_3:-6480856 None:intergenic
GATGATTCCCACCAAGCCCA+TGG 0.611182 1_3:+6489294 Msa0100040:three_prime_UTR
TACCTTGAATAGCTTGTGTG+TGG 0.611252 1_3:-6483650 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.613001 1_3:+6488730 Msa0100040:CDS
CAAGGGTCCAACCCTTCTTG+AGG 0.613167 1_3:+6488755 Msa0100040:CDS
TTGGTCAAGAGCCTCAAGAA+GGG 0.614606 1_3:-6488766 None:intergenic
TAATGAAATCCCTATGTCCG+GGG 0.614881 1_3:-6488304 None:intergenic
GTTCAGCTTTGAGCTTGTCG+AGG 0.615570 1_3:-6488205 None:intergenic
GAATTGGGACTGTGCCTGTG+GGG 0.615616 1_3:+6488859 Msa0100040:CDS
ATCATTGATTCCACTACCGG+TGG 0.618310 1_3:+6488371 Msa0100040:CDS
CTCCAAGGATGACCCTGCCA+AGG 0.619064 1_3:+6489070 Msa0100040:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1_3:-6488442 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1_3:-6488831 None:intergenic
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1_3:-6488928 None:intergenic
ACAGCGAAACGGCCAAGTGG+AGG 0.624787 1_3:-6489340 None:intergenic
AAGCTTGTAGATCAAGTGAC+CGG 0.624860 1_3:-6488099 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1_3:+6488893 Msa0100040:CDS
TGTACATGAGCAAAAGTGGT+TGG 0.625807 1_3:-6481065 None:intergenic
AGAGAAAGTCTCAACCACCA+TGG 0.628507 1_3:-6489311 None:intergenic
AATGATTTGTTGCTGCAACA+AGG 0.628678 1_3:+6488469 Msa0100040:CDS
TTCTGGAAAGGAGATTGAGA+AGG 0.629354 1_3:+6489232 Msa0100040:CDS
CAAGGATGACCCTGCCAAGG+AGG 0.630150 1_3:+6489073 Msa0100040:CDS
AGTTAGCAGCCTCCTTGGCA+GGG 0.632288 1_3:-6489082 None:intergenic
GACAACTGAAGTGAAGTCTG+TGG 0.632641 1_3:+6488941 Msa0100040:CDS
TTATGTTGCCTCAAACTCCA+AGG 0.633897 1_3:+6489055 Msa0100040:CDS
AGAAGACACCGACAAAAGTG+TGG 0.637186 1_3:-6481104 None:intergenic
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 1_3:-6488821 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 1_3:-6488824 None:intergenic
CAGCAAATTTGACAGCAATG+TGG 0.639349 1_3:-6489184 None:intergenic
AATACCAGCTTCAAAACCAC+CGG 0.642728 1_3:-6488387 None:intergenic
CACCCAAGTACTCGAAAGGT+AGG 0.646065 1_3:+6488598 Msa0100040:CDS
TGACAGCAATGTGGGAGGTG+TGG 0.647495 1_3:-6489175 None:intergenic
CTGACAGCGAAACGGCCAAG+TGG 0.653478 1_3:-6489343 None:intergenic
ACTACACCCAAGTACTCGAA+AGG 0.659744 1_3:+6488594 Msa0100040:CDS
GCAAACACTATTGTTGGACG+GGG 0.660059 1_3:-6481186 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.663761 1_3:+6489032 Msa0100040:CDS
CGTGCAGGAAGATCTATCCA+AGG 0.664929 1_3:+6489471 Msa0100040:three_prime_UTR
TTAAATCCCACATTGTCACC+GGG 0.665158 1_3:-6488996 None:intergenic
ACTGGGTTCTTGATCGACGG+TGG 0.668732 1_3:+6489620 Msa0100040:three_prime_UTR
CAGGGATATGCGTCAAACTG+TGG 0.672188 1_3:+6489363 Msa0100040:three_prime_UTR
GAGAAGAAGGATCCCAGCGG+AGG 0.673598 1_3:+6489409 Msa0100040:three_prime_UTR
AAATTTGACAGCAATGTGGG+AGG 0.676474 1_3:-6489180 None:intergenic
AGGATTATGGAAATTGAACA+AGG 0.676933 1_3:-6483066 None:intergenic
AATGAAATCCCTATGTCCGG+GGG 0.681259 1_3:-6488303 None:intergenic
CTTGTAGATCAAGTGACCGG+TGG 0.685001 1_3:-6488096 None:intergenic
GTGATCATCATGAATCACCC+GGG 0.685129 1_3:+6489116 Msa0100040:CDS
TCACAATTGACATTGCTCTG+TGG 0.708352 1_3:+6488240 Msa0100040:CDS
CCAACAATAGTGTTTGCAGG+TGG 0.708415 1_3:+6481192 Msa0100040:five_prime_UTR
GGTGTGGCAGTCAAGAACAG+GGG 0.711459 1_3:-6489159 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 1_3:+6489297 Msa0100040:three_prime_UTR
GCATCATGAAGCTCTCACTG+AGG 0.742195 1_3:+6488968 Msa0100040:CDS
AAAGTTGCGAGATGACGGTG+CGG 0.764916 1_3:-6489587 None:intergenic
GTGGAGAAGAAGGATCCCAG+CGG 0.769725 1_3:+6489406 Msa0100040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTAAATAATGAAAAA+GGG + chr1_3:6481590-6481609 Msa0100040:intron 10.0%
!!! AGTAATAAGTTTTTATTATT+TGG - chr1_3:6482874-6482893 None:intergenic 10.0%
!!! ATAAAAACTGAATTTTAAAA+AGG - chr1_3:6483553-6483572 None:intergenic 10.0%
!!! TTTTTTATACAATTTAATAG+TGG - chr1_3:6483753-6483772 None:intergenic 10.0%
!!! AATTAATAATTTGTTTCTTT+TGG + chr1_3:6485665-6485684 Msa0100040:intron 10.0%
!!! AAGTATTTTTCTTTTATTTT+TGG - chr1_3:6486737-6486756 None:intergenic 10.0%
!!! AAAATAATTCATTTTTCAAT+GGG - chr1_3:6486790-6486809 None:intergenic 10.0%
!!! TAAAATAATTCATTTTTCAA+TGG - chr1_3:6486791-6486810 None:intergenic 10.0%
!! GTACTTTAATTAACTTATTT+AGG + chr1_3:6481473-6481492 Msa0100040:intron 15.0%
!!! CTTTTAGTAAATAATGAAAA+AGG + chr1_3:6481589-6481608 Msa0100040:intron 15.0%
!!! AAAAAACCACTATATTTTTT+TGG - chr1_3:6482505-6482524 None:intergenic 15.0%
!! GATATGATAAAAAAAACATT+TGG + chr1_3:6484982-6485001 Msa0100040:intron 15.0%
!! TATTAATTAACAATGAATCA+AGG - chr1_3:6485653-6485672 None:intergenic 15.0%
!! ATAAAATTAGATCTCATATA+AGG + chr1_3:6486562-6486581 Msa0100040:intron 15.0%
!! TTAGTAAGTTGTTAAAATAT+AGG + chr1_3:6487551-6487570 Msa0100040:intron 15.0%
!! AGTATATAATTCAATTTGTA+GGG - chr1_3:6487687-6487706 None:intergenic 15.0%
!! AAGTATATAATTCAATTTGT+AGG - chr1_3:6487688-6487707 None:intergenic 15.0%
!!! TTCTTTTTCGTTTTTTAATT+TGG + chr1_3:6487936-6487955 Msa0100040:intron 15.0%
!! ATAAAATCATTATTCGTTGA+GGG - chr1_3:6481026-6481045 None:intergenic 20.0%
!! AATAAAATCATTATTCGTTG+AGG - chr1_3:6481027-6481046 None:intergenic 20.0%
!!! GACATATGTTGTTATATTTT+GGG + chr1_3:6482083-6482102 Msa0100040:intron 20.0%
!! AATTAAGGAATAGTTGTATT+TGG + chr1_3:6482115-6482134 Msa0100040:intron 20.0%
!! ATTAAGGAATAGTTGTATTT+GGG + chr1_3:6482116-6482135 Msa0100040:intron 20.0%
!! AAAAATATTCATCGAAAGTT+AGG - chr1_3:6482224-6482243 None:intergenic 20.0%
!! ATACATAATATATGTATGCA+AGG + chr1_3:6482454-6482473 Msa0100040:intron 20.0%
!! CTACTAAATTATTGTTAACT+TGG - chr1_3:6482585-6482604 None:intergenic 20.0%
!!! AAAACTGAATTTTAAAAAGG+AGG - chr1_3:6483550-6483569 None:intergenic 20.0%
!! AAGAGAAATAAGAAATGATT+TGG + chr1_3:6484572-6484591 Msa0100040:intron 20.0%
!! AGAGAAATAAGAAATGATTT+GGG + chr1_3:6484573-6484592 Msa0100040:intron 20.0%
!!! ATTTGTTTCTTATATAGAGA+AGG - chr1_3:6484717-6484736 None:intergenic 20.0%
!! CTATATAAGAAACAAATACT+TGG + chr1_3:6484720-6484739 Msa0100040:intron 20.0%
!! GATAAAAAAAACATTTGGAT+TGG + chr1_3:6484987-6485006 Msa0100040:intron 20.0%
!! TTAATACTCTATAACCAAAT+TGG - chr1_3:6485168-6485187 None:intergenic 20.0%
!!! TTACACCTTTAATTTAACAA+TGG - chr1_3:6485490-6485509 None:intergenic 20.0%
!!! TTGTTAAATTAAAGGTGTAA+TGG + chr1_3:6485490-6485509 Msa0100040:intron 20.0%
!! AGATTGAATAAATCCTTTAT+TGG - chr1_3:6485918-6485937 None:intergenic 20.0%
!! TCAACAGTAAAAAGATTAAA+AGG + chr1_3:6485961-6485980 Msa0100040:intron 20.0%
!!! TATACCTTTGTATTTCTTTT+GGG + chr1_3:6486335-6486354 Msa0100040:intron 20.0%
!! AATCAAACTTCATATTATCA+AGG - chr1_3:6486390-6486409 None:intergenic 20.0%
!! GTCTAAAAACAAAACTTATT+AGG + chr1_3:6486933-6486952 Msa0100040:intron 20.0%
!!! AAACGATCATTACATAATTT+TGG - chr1_3:6487306-6487325 None:intergenic 20.0%
!!! TGACATTATTTTTTTCATCT+AGG + chr1_3:6487362-6487381 Msa0100040:intron 20.0%
!!! GACATTATTTTTTTCATCTA+GGG + chr1_3:6487363-6487382 Msa0100040:intron 20.0%
!!! TTTTCAAAATTTGACGAATT+TGG - chr1_3:6487455-6487474 None:intergenic 20.0%
!! TAACAACTTACTAATCAATT+AGG - chr1_3:6487545-6487564 None:intergenic 20.0%
!! GTAAAAAATTCAATTTCAAG+TGG - chr1_3:6487776-6487795 None:intergenic 20.0%
!!! TATTGTTTTCTTTGTTCAAT+TGG + chr1_3:6487877-6487896 Msa0100040:intron 20.0%
!! ATTATGGTGATTACAATAAA+TGG + chr1_3:6489500-6489519 Msa0100040:intron 20.0%
! GGATAATTAGAAATGACAAT+AGG - chr1_3:6480871-6480890 None:intergenic 25.0%
! GTAAAAATCGAATATCTTCA+AGG - chr1_3:6480910-6480929 None:intergenic 25.0%
! TCTGACAATTGATATATGTT+GGG + chr1_3:6481327-6481346 Msa0100040:five_prime_UTR 25.0%
!! GTCTCCTTTAAATTTTTCTA+AGG + chr1_3:6481412-6481431 Msa0100040:intron 25.0%
! CCTTCCTTAGAAAAATTTAA+AGG - chr1_3:6481419-6481438 None:intergenic 25.0%
!!! CCTTTAAATTTTTCTAAGGA+AGG + chr1_3:6481416-6481435 Msa0100040:intron 25.0%
! GAAAATTGTGTCGTATATTT+GGG + chr1_3:6481495-6481514 Msa0100040:intron 25.0%
! TAGTAAATAATGAAAAAGGG+AGG + chr1_3:6481593-6481612 Msa0100040:intron 25.0%
!! TAAGAAAGACTTTTGATACA+AGG + chr1_3:6481849-6481868 Msa0100040:intron 25.0%
! AAATATAACAACATATGTCG+TGG - chr1_3:6482082-6482101 None:intergenic 25.0%
!! CGACATATGTTGTTATATTT+TGG + chr1_3:6482082-6482101 Msa0100040:intron 25.0%
! AGAAAATGATGGTATTATCT+TGG + chr1_3:6482331-6482350 Msa0100040:intron 25.0%
! ATTATCTTGGAATTGGTTAT+TGG + chr1_3:6482344-6482363 Msa0100040:intron 25.0%
! TTATCTTGGAATTGGTTATT+GGG + chr1_3:6482345-6482364 Msa0100040:intron 25.0%
! CTATCTTAGAAACAATCAAA+GGG - chr1_3:6482392-6482411 None:intergenic 25.0%
! ACTATCTTAGAAACAATCAA+AGG - chr1_3:6482393-6482412 None:intergenic 25.0%
! TAATATATGTATGCAAGGTT+CGG + chr1_3:6482459-6482478 Msa0100040:intron 25.0%
!!! AAACCACTATATTTTTTTGG+TGG - chr1_3:6482502-6482521 None:intergenic 25.0%
!!! TGGTTTTTTTTGTTTATGTG+TGG + chr1_3:6482516-6482535 Msa0100040:intron 25.0%
!!! TGTGGTTTTTTGTTCATAAA+TGG + chr1_3:6482534-6482553 Msa0100040:intron 25.0%
! ATTTAGTAGATGTATAAGCT+AGG + chr1_3:6482596-6482615 Msa0100040:intron 25.0%
!! AAAAAACAAAAAGAGCATGA+GGG - chr1_3:6482832-6482851 None:intergenic 25.0%
!! TAAAAAACAAAAAGAGCATG+AGG - chr1_3:6482833-6482852 None:intergenic 25.0%
! TTGTAGTTTAAGTAGGATTA+TGG - chr1_3:6483082-6483101 None:intergenic 25.0%
! AATCCTACTTAAACTACAAA+TGG + chr1_3:6483083-6483102 Msa0100040:five_prime_UTR 25.0%
! GCTGCATATATAATATATTG+TGG - chr1_3:6483152-6483171 None:intergenic 25.0%
!!! CTATTTTTCAAATGTGATTG+TGG + chr1_3:6483240-6483259 Msa0100040:intron 25.0%
! GAAAAGAAATGTGAAAAGAA+TGG - chr1_3:6483338-6483357 None:intergenic 25.0%
! AATCATCCAAAGTATACAAA+GGG - chr1_3:6483365-6483384 None:intergenic 25.0%
! GATTGACAATACTAGTTATT+TGG + chr1_3:6483400-6483419 Msa0100040:intron 25.0%
! TAGTATTTCAAGATTGATGA+AGG - chr1_3:6483448-6483467 None:intergenic 25.0%
! AAAACAATTAAGTCGAAAGA+TGG - chr1_3:6483494-6483513 None:intergenic 25.0%
!!! TTGTTTTGATTCCCTATTTT+CGG + chr1_3:6483507-6483526 Msa0100040:intron 25.0%
!!! TTTATATCCTTGTCTAGTTT+TGG + chr1_3:6483568-6483587 Msa0100040:intron 25.0%
!! AAGTTTTCTTAAAGAACTTC+CGG + chr1_3:6483612-6483631 Msa0100040:five_prime_UTR 25.0%
! ATAAAGCTTCTTATCAAGAT+GGG - chr1_3:6483830-6483849 None:intergenic 25.0%
! TATAAAGCTTCTTATCAAGA+TGG - chr1_3:6483831-6483850 None:intergenic 25.0%
!! TTGATAAGAAGCTTTATACT+GGG + chr1_3:6483833-6483852 Msa0100040:intron 25.0%
! TGTCTTCATAATTACTACAT+TGG + chr1_3:6483887-6483906 Msa0100040:intron 25.0%
! CATAAGTAGATAGTGAATAA+AGG - chr1_3:6484155-6484174 None:intergenic 25.0%
! CTTTATTCACTATCTACTTA+TGG + chr1_3:6484153-6484172 Msa0100040:intron 25.0%
!! CGAAATTACGTATTGATATT+TGG + chr1_3:6484187-6484206 Msa0100040:intron 25.0%
!!! ATATTTGGTACGATTAGTTT+TGG + chr1_3:6484202-6484221 Msa0100040:intron 25.0%
! ATTAAGTATATCTAACATCG+AGG + chr1_3:6484225-6484244 Msa0100040:intron 25.0%
!! GTCTAGAATACTTGAATATT+TGG + chr1_3:6484317-6484336 Msa0100040:intron 25.0%
! TAAGAATTATATGCTCTCAA+TGG + chr1_3:6484443-6484462 Msa0100040:intron 25.0%
! AAGAATTATATGCTCTCAAT+GGG + chr1_3:6484444-6484463 Msa0100040:intron 25.0%
! GAGAAATAAGAAATGATTTG+GGG + chr1_3:6484574-6484593 Msa0100040:intron 25.0%
! GTTTGAATTTGTATTAACCA+TGG - chr1_3:6484656-6484675 None:intergenic 25.0%
! AATTTGTATTATCCTCTCTA+TGG + chr1_3:6484758-6484777 Msa0100040:intron 25.0%
!! CTCAAACTTTTGTAATTGAT+TGG + chr1_3:6484831-6484850 Msa0100040:intron 25.0%
!! TTTTGTAATTGATTGGATAG+TGG + chr1_3:6484838-6484857 Msa0100040:intron 25.0%
! TGAGTATTCAATCCAATAAA+AGG - chr1_3:6484870-6484889 None:intergenic 25.0%
!!! AAAAAACATTTGGATTGGTT+AGG + chr1_3:6484992-6485011 Msa0100040:intron 25.0%
!! AAAATCATGTATGTTTGTTG+AGG + chr1_3:6485060-6485079 Msa0100040:intron 25.0%
! AATACCAAAAACATTTGAAG+TGG + chr1_3:6485121-6485140 Msa0100040:intron 25.0%
!! TTGAAGTCTTATAACCAATT+TGG + chr1_3:6485151-6485170 Msa0100040:intron 25.0%
! AATCTAATGGTGAAAAAAAG+TGG - chr1_3:6485318-6485337 None:intergenic 25.0%
! ACCAACCATTGTTAAATTAA+AGG + chr1_3:6485482-6485501 Msa0100040:intron 25.0%
!! ACCTTTAATTTAACAATGGT+TGG - chr1_3:6485486-6485505 None:intergenic 25.0%
!! TGATCAAAGGTACAAAAAAT+TGG + chr1_3:6486199-6486218 Msa0100040:intron 25.0%
!! TACAAAAAATTGGTCTAAGT+TGG + chr1_3:6486209-6486228 Msa0100040:intron 25.0%
!! CTATACCTTTGTATTTCTTT+TGG + chr1_3:6486334-6486353 Msa0100040:intron 25.0%
! TTAACCCAAAAGAAATACAA+AGG - chr1_3:6486342-6486361 None:intergenic 25.0%
! CTAAAATCATTACTACTTCT+TGG + chr1_3:6486637-6486656 Msa0100040:intron 25.0%
!!! TTTAGACTTTAGAGAGTTTT+AGG - chr1_3:6486855-6486874 None:intergenic 25.0%
!!! TAAAACTCTCTAAAGTCTAA+AGG + chr1_3:6486854-6486873 Msa0100040:intron 25.0%
!!! AAAACTCTCTAAAGTCTAAA+GGG + chr1_3:6486855-6486874 Msa0100040:intron 25.0%
! TCATAGCTTATTCATATAGT+TGG + chr1_3:6487157-6487176 Msa0100040:intron 25.0%
!!! TTGTTTTACTTTTCTGTTTC+TGG + chr1_3:6487219-6487238 Msa0100040:intron 25.0%
! TATTAGTATGACAGTATGTT+AGG + chr1_3:6487485-6487504 Msa0100040:intron 25.0%
! ATTAGTATGACAGTATGTTA+GGG + chr1_3:6487486-6487505 Msa0100040:intron 25.0%
! GAAAACAATACATGTATGTA+CGG - chr1_3:6487867-6487886 None:intergenic 25.0%
!!! TTTGTGGTTTTAAGCTTTTA+AGG + chr1_3:6488002-6488021 Msa0100040:five_prime_UTR 25.0%
!!! TTTAAGCTTTTAAGGACAAA+TGG + chr1_3:6488010-6488029 Msa0100040:exon 25.0%
!!! TTAAGCTTTTAAGGACAAAT+GGG + chr1_3:6488011-6488030 Msa0100040:exon 25.0%
! TTCATTAAGAACATGATTAC+TGG + chr1_3:6488320-6488339 Msa0100040:CDS 25.0%
!!! TGTCTTGTTAACTTGTTTTT+CGG + chr1_3:6489550-6489569 Msa0100040:three_prime_UTR 25.0%
!!! CAAAATCAAATAGTTCTAAC+AGG - chr1_3:6489686-6489705 None:intergenic 25.0%
! AACATAGACTAAAAAACACA+TGG - chr1_3:6489749-6489768 None:intergenic 25.0%
TGAATGAGGAAAAGAATTCA+TGG - chr1_3:6480812-6480831 None:intergenic 30.0%
ATGACAATAGGAAATGAATG+AGG - chr1_3:6480859-6480878 None:intergenic 30.0%
! CGATTTTTACTTGTATTTCC+AGG + chr1_3:6480920-6480939 Msa0100040:five_prime_UTR 30.0%
CACAAATAGAAAATATGTCC+TGG - chr1_3:6480941-6480960 None:intergenic 30.0%
CATGTACAATGATTCTAACT+TGG + chr1_3:6481080-6481099 Msa0100040:five_prime_UTR 30.0%
GACTACAAAAAATCTTGAGA+AGG - chr1_3:6481167-6481186 None:intergenic 30.0%
!! TATTGGCGATTTTTAGATTG+TGG + chr1_3:6481223-6481242 Msa0100040:five_prime_UTR 30.0%
GTCTGACAATTGATATATGT+TGG + chr1_3:6481326-6481345 Msa0100040:five_prime_UTR 30.0%
! CATTATGTTTTCTGTTTCCT+CGG + chr1_3:6481363-6481382 Msa0100040:intron 30.0%
TTTAAAGGAGACAAAGATGA+GGG - chr1_3:6481404-6481423 None:intergenic 30.0%
ATTTAAAGGAGACAAAGATG+AGG - chr1_3:6481405-6481424 None:intergenic 30.0%
GGAAAATTGTGTCGTATATT+TGG + chr1_3:6481494-6481513 Msa0100040:intron 30.0%
TAAAATGACTCACACTTGAA+TGG - chr1_3:6481716-6481735 None:intergenic 30.0%
!! TGTGAGTCATTTTATTCATC+TGG + chr1_3:6481722-6481741 Msa0100040:intron 30.0%
TCAAAAGTCTTTCTTACCAA+GGG - chr1_3:6481845-6481864 None:intergenic 30.0%
ATCAAAAGTCTTTCTTACCA+AGG - chr1_3:6481846-6481865 None:intergenic 30.0%
!!! TAAGGTTTTAGGTTAAGATG+TGG - chr1_3:6481971-6481990 None:intergenic 30.0%
! ACTCAATGTCTTAAGGTTTT+AGG - chr1_3:6481982-6482001 None:intergenic 30.0%
ACCTTAAGACATTGAGTTTA+TGG + chr1_3:6481985-6482004 Msa0100040:intron 30.0%
TCCATAAACTCAATGTCTTA+AGG - chr1_3:6481989-6482008 None:intergenic 30.0%
!! ACTCACTTTTAATCCAATGT+GGG + chr1_3:6482033-6482052 Msa0100040:intron 30.0%
TTTGGGCTAATTGAGAATTA+AGG + chr1_3:6482100-6482119 Msa0100040:intron 30.0%
TACACACACAAAAAATCGAT+CGG - chr1_3:6482187-6482206 None:intergenic 30.0%
TACAACTATGATTGCTCAAT+AGG - chr1_3:6482272-6482291 None:intergenic 30.0%
TGATGGTATTATCTTGGAAT+TGG + chr1_3:6482337-6482356 Msa0100040:intron 30.0%
AATATATGTATGCAAGGTTC+GGG + chr1_3:6482460-6482479 Msa0100040:intron 30.0%
!!! TATATTTTTTTGGTGGTGGT+CGG - chr1_3:6482495-6482514 None:intergenic 30.0%
ATAAATGGTCGAGAAAATGA+AGG + chr1_3:6482549-6482568 Msa0100040:intron 30.0%
ATTCAAATAGCTAGAATAGC+CGG - chr1_3:6482717-6482736 None:intergenic 30.0%
GTATGTTAAGAACTTTGACT+TGG + chr1_3:6482783-6482802 Msa0100040:intron 30.0%
! ATTTTTATGCTTTGTCTGTG+AGG + chr1_3:6482957-6482976 Msa0100040:intron 30.0%
! TTACCAAGCAATGATTTTGT+TGG - chr1_3:6483030-6483049 None:intergenic 30.0%
AGGATTATGGAAATTGAACA+AGG - chr1_3:6483069-6483088 None:intergenic 30.0%
GTACCATTTGTAGTTTAAGT+AGG - chr1_3:6483089-6483108 None:intergenic 30.0%
CATCTCATCTATAATGATTC+TGG + chr1_3:6483174-6483193 Msa0100040:intron 30.0%
CAATCATCCAAAGTATACAA+AGG - chr1_3:6483366-6483385 None:intergenic 30.0%
CAATCTTGAAATACTATTGC+AGG + chr1_3:6483452-6483471 Msa0100040:intron 30.0%
! GGAAGTTCTTTAAGAAAACT+TGG - chr1_3:6483613-6483632 None:intergenic 30.0%
ATCAATCAACATCATCATGT+GGG - chr1_3:6483704-6483723 None:intergenic 30.0%
! CTTGATAAGAAGCTTTATAC+TGG + chr1_3:6483832-6483851 Msa0100040:intron 30.0%
CAAACTGAACACAAATACTT+TGG - chr1_3:6483869-6483888 None:intergenic 30.0%
CTTCATAATTACTACATTGG+TGG + chr1_3:6483890-6483909 Msa0100040:intron 30.0%
ATGTTCACTTTAACAACTGT+TGG + chr1_3:6483985-6484004 Msa0100040:intron 30.0%
GTACTAGATAAACTAGTATC+TGG - chr1_3:6484016-6484035 None:intergenic 30.0%
TGATTATTACTTCTAGCAGA+AGG - chr1_3:6484042-6484061 None:intergenic 30.0%
!! CTTAATAGTCGTTGTTTTGT+TGG - chr1_3:6484079-6484098 None:intergenic 30.0%
! TAAAGGCATATGTTGTATTG+TGG - chr1_3:6484138-6484157 None:intergenic 30.0%
TATTGATGAAAAGTGATCAC+AGG + chr1_3:6484275-6484294 Msa0100040:intron 30.0%
TCAAGTATTCTAGACATACA+AGG - chr1_3:6484312-6484331 None:intergenic 30.0%
ATCTATGTTCCAAATGTAGA+AGG - chr1_3:6484352-6484371 None:intergenic 30.0%
TTGGAACATAGATAGATTCA+AGG + chr1_3:6484359-6484378 Msa0100040:intron 30.0%
GTCTTTCTCTCATAATTAAG+AGG + chr1_3:6484466-6484485 Msa0100040:intron 30.0%
TGAATTTGTATTAACCATGG+AGG - chr1_3:6484653-6484672 None:intergenic 30.0%
TCAAACTCAAACTAATGCAA+AGG + chr1_3:6484670-6484689 Msa0100040:intron 30.0%
TGTTTCTTATATAGAGAAGG+AGG - chr1_3:6484714-6484733 None:intergenic 30.0%
!! TAGTGGATATAGCCTTTTAT+TGG + chr1_3:6484855-6484874 Msa0100040:intron 30.0%
AGTATTAAGAATACCTCTCA+AGG - chr1_3:6484946-6484965 None:intergenic 30.0%
GGTATTCTTAATACTTACGT+TGG + chr1_3:6484951-6484970 Msa0100040:intron 30.0%
! ACTTCCACTTCAAATGTTTT+TGG - chr1_3:6485128-6485147 None:intergenic 30.0%
AGTATTAAGTCCTAGATGAA+TGG + chr1_3:6485180-6485199 Msa0100040:intron 30.0%
GTATTAAGTCCTAGATGAAT+GGG + chr1_3:6485181-6485200 Msa0100040:intron 30.0%
TATTAAGTCCTAGATGAATG+GGG + chr1_3:6485182-6485201 Msa0100040:intron 30.0%
GAACCACAATAAAATATGGT+GGG - chr1_3:6485348-6485367 None:intergenic 30.0%
TGAACCACAATAAAATATGG+TGG - chr1_3:6485349-6485368 None:intergenic 30.0%
GTGTAAAATCTAATTGTGAG+AGG + chr1_3:6485545-6485564 Msa0100040:intron 30.0%
GTGTAAAATCTAATTGTGAG+AGG + chr1_3:6485545-6485564 Msa0100040:intron 30.0%
AAAAGACAAATTCGTTGTTG+TGG - chr1_3:6485696-6485715 None:intergenic 30.0%
! AACGAATTTGTCTTTTGTTC+TGG + chr1_3:6485700-6485719 Msa0100040:intron 30.0%
! ACGAATTTGTCTTTTGTTCT+GGG + chr1_3:6485701-6485720 Msa0100040:intron 30.0%
AATGGCAAAGATGTCTAATA+TGG - chr1_3:6485784-6485803 None:intergenic 30.0%
!! TGTTTCTAGAGATCAAACAA+TGG - chr1_3:6485802-6485821 None:intergenic 30.0%
!! CAATATATTGATTCTCAAGC+TGG + chr1_3:6485831-6485850 Msa0100040:intron 30.0%
TTCAAAGTCTCAACCAATAA+AGG + chr1_3:6485902-6485921 Msa0100040:intron 30.0%
TTAAAAGGAAGAAGAACTTG+AGG + chr1_3:6485976-6485995 Msa0100040:intron 30.0%
TTATGGTTGAATTGCAGAAA+TGG + chr1_3:6486016-6486035 Msa0100040:intron 30.0%
CTTTGATCAAATGAGATACA+TGG - chr1_3:6486188-6486207 None:intergenic 30.0%
CATGTATCTCATTTGATCAA+AGG + chr1_3:6486186-6486205 Msa0100040:intron 30.0%
TACTAGTTCACAACTCAAAT+AGG - chr1_3:6486287-6486306 None:intergenic 30.0%
TTCTACCCAATAATCAAACT+CGG + chr1_3:6486440-6486459 Msa0100040:intron 30.0%
AGATCTCATATAAGGATGAA+AGG + chr1_3:6486570-6486589 Msa0100040:intron 30.0%
TTAGAGGGTTTATAAAGTCA+TGG - chr1_3:6487027-6487046 None:intergenic 30.0%
AAGATAACAATGTACCTTGA+AGG - chr1_3:6487133-6487152 None:intergenic 30.0%
!!! CTGTTTCTGGTTTTACTTTT+CGG + chr1_3:6487232-6487251 Msa0100040:intron 30.0%
CATACATGAACATGTGAATA+TGG + chr1_3:6487407-6487426 Msa0100040:intron 30.0%
TCAAAATTTGACGAATTTGG+TGG - chr1_3:6487452-6487471 None:intergenic 30.0%
ATAGGAACCTGATTAATAGT+AGG + chr1_3:6487569-6487588 Msa0100040:intron 30.0%
TTAACCACCTACTATTAATC+AGG - chr1_3:6487579-6487598 None:intergenic 30.0%
ACTCAATTAAACTGACATGT+TGG - chr1_3:6487616-6487635 None:intergenic 30.0%
ACATGTCAGTTTAATTGAGT+CGG + chr1_3:6487616-6487635 Msa0100040:intron 30.0%
! TTTTCGTATCATACTGTGTT+TGG + chr1_3:6487716-6487735 Msa0100040:intron 30.0%
CATTGCTTTCTTTGTTGAAT+TGG + chr1_3:6487971-6487990 Msa0100040:intron 30.0%
CACATTAACATTGTTGTCAT+TGG + chr1_3:6488047-6488066 Msa0100040:CDS 30.0%
!!! TTTTGAAGCTGGTATTTCAA+AGG + chr1_3:6488394-6488413 Msa0100040:CDS 30.0%
TAGGTATGAAGAAATTGTGA+AGG + chr1_3:6488617-6488636 Msa0100040:CDS 30.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1_3:6488641-6488660 Msa0100040:CDS 30.0%
ATCACCATTCTTCAAGAATT+TGG - chr1_3:6489260-6489279 None:intergenic 30.0%
GGGAATCATCTTAATAATAC+CGG - chr1_3:6489284-6489303 None:intergenic 30.0%
GGTGATTACAATAAATGGTT+TGG + chr1_3:6489505-6489524 Msa0100040:intron 30.0%
TGAATGAGGAAAAGAGTTCA+CGG - chr1_3:6480845-6480864 None:intergenic 35.0%
ATCGAATATCTTCAAGGAAG+CGG - chr1_3:6480904-6480923 None:intergenic 35.0%
GGTGCTAGAATCAAAATCTA+AGG - chr1_3:6481005-6481024 None:intergenic 35.0%
TCATTGTACATGAGCAAAAG+TGG - chr1_3:6481072-6481091 None:intergenic 35.0%
! AGTATTGAGAGAAGTCATGA+GGG - chr1_3:6481130-6481149 None:intergenic 35.0%
!! AAGTATTGAGAGAAGTCATG+AGG - chr1_3:6481131-6481150 None:intergenic 35.0%
!!! GTGGAGAAGACTTTTTTGTT+CGG + chr1_3:6481242-6481261 Msa0100040:five_prime_UTR 35.0%
!!! TGGAGAAGACTTTTTTGTTC+GGG + chr1_3:6481243-6481262 Msa0100040:five_prime_UTR 35.0%
ACTCAAATGAAAGTGGTTCA+AGG - chr1_3:6481308-6481327 None:intergenic 35.0%
TTGTCAGACTCAAATGAAAG+TGG - chr1_3:6481315-6481334 None:intergenic 35.0%
GGATAAGGAAATATAAACCG+AGG - chr1_3:6481383-6481402 None:intergenic 35.0%
!! TATATTTGGGTCATTGGCTT+GGG + chr1_3:6481508-6481527 Msa0100040:intron 35.0%
TCAATGTTGTTGGGTTATGA+GGG + chr1_3:6481616-6481635 Msa0100040:intron 35.0%
TGAGTTAGAAATCCCACATT+AGG - chr1_3:6481669-6481688 None:intergenic 35.0%
GTTATATGCTTTCCCTTAAG+CGG + chr1_3:6481744-6481763 Msa0100040:intron 35.0%
TCATGAGGGATCATCTATAT+TGG + chr1_3:6481914-6481933 Msa0100040:intron 35.0%
!! CACTCACTTTTAATCCAATG+TGG + chr1_3:6482032-6482051 Msa0100040:intron 35.0%
AATCCGGTTGAGCATATTAA+GGG - chr1_3:6482157-6482176 None:intergenic 35.0%
ACACACACAAAAAATCGATC+GGG - chr1_3:6482186-6482205 None:intergenic 35.0%
TTGTGTGTGTAAACCTCAAT+CGG + chr1_3:6482196-6482215 Msa0100040:intron 35.0%
! ATACCATCATTTTCTCGACT+AGG - chr1_3:6482326-6482345 None:intergenic 35.0%
! TAAGCTTAGCTCAGTTGATA+GGG + chr1_3:6482428-6482447 Msa0100040:intron 35.0%
ATATATGTATGCAAGGTTCG+GGG + chr1_3:6482461-6482480 Msa0100040:intron 35.0%
!!! ATATTTTTTTGGTGGTGGTC+GGG - chr1_3:6482494-6482513 None:intergenic 35.0%
!!! CCACTATATTTTTTTGGTGG+TGG - chr1_3:6482499-6482518 None:intergenic 35.0%
CCACCACCAAAAAAATATAG+TGG + chr1_3:6482496-6482515 Msa0100040:intron 35.0%
TAGATCACTACTCACTATTG+GGG - chr1_3:6482679-6482698 None:intergenic 35.0%
GTAGATCACTACTCACTATT+GGG - chr1_3:6482680-6482699 None:intergenic 35.0%
AGTAGATCACTACTCACTAT+TGG - chr1_3:6482681-6482700 None:intergenic 35.0%
!! TTTGACTTGGAGTATCCTTA+AGG + chr1_3:6482796-6482815 Msa0100040:intron 35.0%
AGTCCAACAAAATCATTGCT+TGG + chr1_3:6483024-6483043 Msa0100040:five_prime_UTR 35.0%
AGAATGGCTGATACATTCTA+GGG - chr1_3:6483322-6483341 None:intergenic 35.0%
AAGAATGGCTGATACATTCT+AGG - chr1_3:6483323-6483342 None:intergenic 35.0%
TCAAGATTGATGAAGGTGAA+TGG - chr1_3:6483441-6483460 None:intergenic 35.0%
CATCAATCAACATCATCATG+TGG - chr1_3:6483705-6483724 None:intergenic 35.0%
GGTGGTATAGTTGCAAAAAT+TGG + chr1_3:6483908-6483927 Msa0100040:intron 35.0%
! ACATTTTCAGCGAAGAAAGT+TGG - chr1_3:6483954-6483973 None:intergenic 35.0%
TCTGATGATTGCACAATATG+CGG + chr1_3:6484108-6484127 Msa0100040:intron 35.0%
TACTTAGAGCCTTCTACATT+TGG + chr1_3:6484340-6484359 Msa0100040:intron 35.0%
GAAGTTCATCTCTAATGATG+AGG + chr1_3:6484488-6484507 Msa0100040:intron 35.0%
! ATTTCTCTTTTCTCACGACA+TGG - chr1_3:6484561-6484580 None:intergenic 35.0%
!!! GATTTTAACTCTCCATAGAG+AGG - chr1_3:6484773-6484792 None:intergenic 35.0%
TTGGATTGAATACTCAACTC+AGG + chr1_3:6484874-6484893 Msa0100040:intron 35.0%
TCTTAATACTTACGTTGGTC+TGG + chr1_3:6484956-6484975 Msa0100040:intron 35.0%
GTGATCAGATACAAAGCATA+TGG + chr1_3:6485016-6485035 Msa0100040:intron 35.0%
TCAGATACAAAGCATATGGT+TGG + chr1_3:6485020-6485039 Msa0100040:intron 35.0%
! TACAAAGCATATGGTTGGTT+TGG + chr1_3:6485025-6485044 Msa0100040:intron 35.0%
CAAATCTCTCTTACATGGTA+GGG + chr1_3:6485207-6485226 Msa0100040:intron 35.0%
!!! ACTAGAGGGTGATTTTAGTT+TGG + chr1_3:6485264-6485283 Msa0100040:intron 35.0%
TGAAAAAAAGTGGTCCAACT+TGG - chr1_3:6485308-6485327 None:intergenic 35.0%
! CACAATAAAATATGGTGGGA+TGG - chr1_3:6485344-6485363 None:intergenic 35.0%
! CATCCCACCATATTTTATTG+TGG + chr1_3:6485342-6485361 Msa0100040:intron 35.0%
GGGTGAACCACAATAAAATA+TGG - chr1_3:6485352-6485371 None:intergenic 35.0%
ATGAGACTATGAGAGAGAAA+GGG - chr1_3:6485396-6485415 None:intergenic 35.0%
AATGAGACTATGAGAGAGAA+AGG - chr1_3:6485397-6485416 None:intergenic 35.0%
GGTGTAATGGTATAACTTAC+AGG + chr1_3:6485503-6485522 Msa0100040:intron 35.0%
! TAAGATTGTGTTGATGAGAG+AGG + chr1_3:6486051-6486070 Msa0100040:intron 35.0%
AAAAAGAGAGAGAACGTGTA+TGG + chr1_3:6486106-6486125 Msa0100040:intron 35.0%
AAAAGAGAGAGAACGTGTAT+GGG + chr1_3:6486107-6486126 Msa0100040:intron 35.0%
AGCAAGAGAGTAATTATGTG+TGG + chr1_3:6486145-6486164 Msa0100040:intron 35.0%
! CTAAGTTGGACCAAAACATT+AGG + chr1_3:6486223-6486242 Msa0100040:intron 35.0%
TCTACCCAATAATCAAACTC+GGG + chr1_3:6486441-6486460 Msa0100040:intron 35.0%
AGAACCCGAGTTTGATTATT+GGG - chr1_3:6486448-6486467 None:intergenic 35.0%
!! TTTGGTTTGATTGTAAGGGA+GGG - chr1_3:6487050-6487069 None:intergenic 35.0%
!! AGGGTTTGGTTTGATTGTAA+GGG - chr1_3:6487054-6487073 None:intergenic 35.0%
!! TAGGGTTTGGTTTGATTGTA+AGG - chr1_3:6487055-6487074 None:intergenic 35.0%
TTAGGGACTAAATTGACAGT+AGG + chr1_3:6487503-6487522 Msa0100040:intron 35.0%
ACAGTAGGTGGTTAAACATA+GGG + chr1_3:6487518-6487537 Msa0100040:intron 35.0%
CATGTCAGTTTAATTGAGTC+GGG + chr1_3:6487617-6487636 Msa0100040:intron 35.0%
ACAATACATGTATGTACGGA+AGG - chr1_3:6487863-6487882 None:intergenic 35.0%
! TGAATTGGCAGATCTTTTTG+TGG + chr1_3:6487986-6488005 Msa0100040:intron 35.0%
!! CTTTTAAGGACAAATGGGTA+AGG + chr1_3:6488016-6488035 Msa0100040:exon 35.0%
TTAATGAAATCCCTATGTCC+GGG - chr1_3:6488308-6488327 None:intergenic 35.0%
CTTAATGAAATCCCTATGTC+CGG - chr1_3:6488309-6488328 None:intergenic 35.0%
AAGCTGGTATTTCAAAGGAT+GGG + chr1_3:6488399-6488418 Msa0100040:CDS 35.0%
!! AATGATTTGTTGCTGCAACA+AGG + chr1_3:6488469-6488488 Msa0100040:CDS 35.0%
!! TTAACGTTTTAGCCCTTTGA+AGG + chr1_3:6488496-6488515 Msa0100040:intron 35.0%
TAATCAGATGCACCTTCAAA+GGG - chr1_3:6488511-6488530 None:intergenic 35.0%
ATAATCAGATGCACCTTCAA+AGG - chr1_3:6488512-6488531 None:intergenic 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1_3:6488645-6488664 Msa0100040:CDS 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1_3:6488652-6488671 None:intergenic 35.0%
! GAACAAACGGAATTTTGTCT+GGG - chr1_3:6488677-6488696 None:intergenic 35.0%
TACAAATCTTGACTGGTACA+AGG + chr1_3:6488737-6488756 Msa0100040:CDS 35.0%
ACAAATCTTGACTGGTACAA+GGG + chr1_3:6488738-6488757 Msa0100040:CDS 35.0%
TCTACAAGATTGGAGGAATT+GGG + chr1_3:6488844-6488863 Msa0100040:CDS 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr1_3:6489000-6489019 None:intergenic 35.0%
! TGTTAAGAACGTTGCTGTTA+AGG + chr1_3:6489019-6489038 Msa0100040:CDS 35.0%
AGCAAATTTGACAGCAATGT+GGG - chr1_3:6489186-6489205 None:intergenic 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr1_3:6489207-6489226 Msa0100040:CDS 35.0%
CTATCCAAGGAAGTCTATTA+TGG + chr1_3:6489484-6489503 Msa0100040:three_prime_UTR 35.0%
ATCACCATAATAGACTTCCT+TGG - chr1_3:6489491-6489510 None:intergenic 35.0%
ACGGAAGAAGAAAGTGAATG+AGG - chr1_3:6480826-6480845 None:intergenic 40.0%
TGTACATGAGCAAAAGTGGT+TGG - chr1_3:6481068-6481087 None:intergenic 40.0%
! AACTTGGTCCACACTTTTGT+CGG + chr1_3:6481096-6481115 Msa0100040:five_prime_UTR 40.0%
TGCAAACACTATTGTTGGAC+GGG - chr1_3:6481190-6481209 None:intergenic 40.0%
CTGCAAACACTATTGTTGGA+CGG - chr1_3:6481191-6481210 None:intergenic 40.0%
AATAGTGTTTGCAGGTGGTA+AGG + chr1_3:6481197-6481216 Msa0100040:five_prime_UTR 40.0%
!!! AGAAGACTTTTTTGTTCGGG+AGG + chr1_3:6481246-6481265 Msa0100040:five_prime_UTR 40.0%
TCAAGGTCTTCAAAGCTCAA+TGG - chr1_3:6481291-6481310 None:intergenic 40.0%
TCTAAGGAAGGAGTTGCATT+AGG + chr1_3:6481428-6481447 Msa0100040:intron 40.0%
TACGTAATGCACTCTTCCAT+TGG - chr1_3:6481456-6481475 None:intergenic 40.0%
GTGTCGTATATTTGGGTCAT+TGG + chr1_3:6481502-6481521 Msa0100040:intron 40.0%
! GTATATTTGGGTCATTGGCT+TGG + chr1_3:6481507-6481526 Msa0100040:intron 40.0%
TGGGATGCAATTTGTGATGT+TGG + chr1_3:6481527-6481546 Msa0100040:intron 40.0%
GGGATGCAATTTGTGATGTT+GGG + chr1_3:6481528-6481547 Msa0100040:intron 40.0%
AAAAGGGAGGTCAATGTTGT+TGG + chr1_3:6481606-6481625 Msa0100040:intron 40.0%
AAAGGGAGGTCAATGTTGTT+GGG + chr1_3:6481607-6481626 Msa0100040:intron 40.0%
GTCAATGTTGTTGGGTTATG+AGG + chr1_3:6481615-6481634 Msa0100040:intron 40.0%
CAATGTTGTTGGGTTATGAG+GGG + chr1_3:6481617-6481636 Msa0100040:intron 40.0%
CTCGAAGGATCATTCACATT+GGG + chr1_3:6481642-6481661 Msa0100040:intron 40.0%
ATTCACATTGGGACCTAATG+TGG + chr1_3:6481653-6481672 Msa0100040:intron 40.0%
TTCACATTGGGACCTAATGT+GGG + chr1_3:6481654-6481673 Msa0100040:intron 40.0%
TTTCTAACTCACCTCAGACT+TGG + chr1_3:6481678-6481697 Msa0100040:intron 40.0%
ACGAAAAAGCTTCCGCTTAA+GGG - chr1_3:6481759-6481778 None:intergenic 40.0%
AAGGTGCATGCAAGTAAATG+TGG - chr1_3:6481782-6481801 None:intergenic 40.0%
! CAACCGTTGACTGTGATATT+GGG + chr1_3:6481891-6481910 Msa0100040:intron 40.0%
TGACCCAATATCACAGTCAA+CGG - chr1_3:6481897-6481916 None:intergenic 40.0%
ACTGTGATATTGGGTCATGA+GGG + chr1_3:6481900-6481919 Msa0100040:intron 40.0%
ACATATGTCGTGGCAAGTAT+GGG - chr1_3:6482072-6482091 None:intergenic 40.0%
AACATATGTCGTGGCAAGTA+TGG - chr1_3:6482073-6482092 None:intergenic 40.0%
ATCCCCTTAATATGCTCAAC+CGG + chr1_3:6482151-6482170 Msa0100040:intron 40.0%
ATCCGGTTGAGCATATTAAG+GGG - chr1_3:6482156-6482175 None:intergenic 40.0%
CAATCCGGTTGAGCATATTA+AGG - chr1_3:6482158-6482177 None:intergenic 40.0%
TGTGTGTGTAAACCTCAATC+GGG + chr1_3:6482197-6482216 Msa0100040:intron 40.0%
TAGCCTAGTCGAGAAAATGA+TGG + chr1_3:6482320-6482339 Msa0100040:intron 40.0%
TGGTTATTGGGCTTCATGAA+TGG + chr1_3:6482357-6482376 Msa0100040:intron 40.0%
GTAAGCTTAGCTCAGTTGAT+AGG + chr1_3:6482427-6482446 Msa0100040:intron 40.0%
!!! TATTTTTTTGGTGGTGGTCG+GGG - chr1_3:6482493-6482512 None:intergenic 40.0%
AGTGAGTAGTGATCTACTCA+TGG + chr1_3:6482683-6482702 Msa0100040:intron 40.0%
TCGTTGCCCTTTGTATACTT+TGG + chr1_3:6483356-6483375 Msa0100040:intron 40.0%
! TACCTTGAATAGCTTGTGTG+TGG - chr1_3:6483653-6483672 None:intergenic 40.0%
! GAAGAAAGTTGGTCACTCAT+AGG - chr1_3:6483943-6483962 None:intergenic 40.0%
CAAAAGCTAGAATACTGCTG+TGG + chr1_3:6484393-6484412 Msa0100040:intron 40.0%
ATTTGCGCTCGTCTCATTAA+AGG - chr1_3:6484624-6484643 None:intergenic 40.0%
CTATGACACAAAGTCATGCT+AGG - chr1_3:6484795-6484814 None:intergenic 40.0%
GATTGAATACTCAACTCAGG+AGG + chr1_3:6484877-6484896 Msa0100040:intron 40.0%
AGACTTGTAGTTACCTTGAG+AGG + chr1_3:6484930-6484949 Msa0100040:intron 40.0%
!! AAAGCATATGGTTGGTTTGG+TGG + chr1_3:6485028-6485047 Msa0100040:intron 40.0%
TGCGAAAGTCATATTAGACG+CGG - chr1_3:6485098-6485117 None:intergenic 40.0%
GCAAATCTCTCTTACATGGT+AGG + chr1_3:6485206-6485225 Msa0100040:intron 40.0%
GTTTGGACCACCTAAAGTAT+TGG + chr1_3:6485281-6485300 Msa0100040:intron 40.0%
ACTTGGACCAATACTTTAGG+TGG - chr1_3:6485291-6485310 None:intergenic 40.0%
CCAACTTGGACCAATACTTT+AGG - chr1_3:6485294-6485313 None:intergenic 40.0%
!! CCTAAAGTATTGGTCCAAGT+TGG + chr1_3:6485291-6485310 Msa0100040:intron 40.0%
!! TGATGGCTTGTATTTTGGGT+GGG - chr1_3:6485372-6485391 None:intergenic 40.0%
!! TTGATGGCTTGTATTTTGGG+TGG - chr1_3:6485373-6485392 None:intergenic 40.0%
!!! GGGTTGATGGCTTGTATTTT+GGG - chr1_3:6485376-6485395 None:intergenic 40.0%
!!! AGGGTTGATGGCTTGTATTT+TGG - chr1_3:6485377-6485396 None:intergenic 40.0%
TATGAGAGAGAAAGGGTTGA+TGG - chr1_3:6485389-6485408 None:intergenic 40.0%
!! TCTTTTGTTCTGGGTAATGC+AGG + chr1_3:6485710-6485729 Msa0100040:intron 40.0%
!! AGTGGAGTGATAGTGGTTTA+TGG + chr1_3:6485999-6486018 Msa0100040:intron 40.0%
GTTGAATTGCAGAAATGGTG+AGG + chr1_3:6486021-6486040 Msa0100040:intron 40.0%
AATTGCAGAAATGGTGAGGT+TGG + chr1_3:6486025-6486044 Msa0100040:intron 40.0%
TTGATGAGAGAGGAGAAGAA+AGG + chr1_3:6486061-6486080 Msa0100040:intron 40.0%
AAAGAGAGAGAACGTGTATG+GGG + chr1_3:6486108-6486127 Msa0100040:intron 40.0%
AGTTGGACCAAAACATTAGG+TGG + chr1_3:6486226-6486245 Msa0100040:intron 40.0%
! GTTTGGACCACCTAATGTTT+TGG - chr1_3:6486236-6486255 None:intergenic 40.0%
GAGAACCCGAGTTTGATTAT+TGG - chr1_3:6486449-6486468 None:intergenic 40.0%
CACCAAGTGACGAATCATTT+GGG - chr1_3:6486471-6486490 None:intergenic 40.0%
TCACCAAGTGACGAATCATT+TGG - chr1_3:6486472-6486491 None:intergenic 40.0%
! CAGAAAGAAAGTGCAATTCC+TGG - chr1_3:6486531-6486550 None:intergenic 40.0%
GGAAAGTGGTCCTAGTAATA+CGG - chr1_3:6486692-6486711 None:intergenic 40.0%
GTTAACCTTCCAGTTCCTAA+GGG - chr1_3:6486713-6486732 None:intergenic 40.0%
TGAATTGTAATCCCTCGAGT+CGG + chr1_3:6486814-6486833 Msa0100040:intron 40.0%
!! GTTTGGTTTGATTGTAAGGG+AGG - chr1_3:6487051-6487070 None:intergenic 40.0%
TACCTTGAAGGAAGAAGAGA+AGG - chr1_3:6487121-6487140 None:intergenic 40.0%
GTGAATATGGATGCTCTTCT+TGG + chr1_3:6487420-6487439 Msa0100040:intron 40.0%
GACAGTAGGTGGTTAAACAT+AGG + chr1_3:6487517-6487536 Msa0100040:intron 40.0%
GGAACCTGATTAATAGTAGG+TGG + chr1_3:6487572-6487591 Msa0100040:intron 40.0%
AGACAGTACACCGAGTATTT+CGG - chr1_3:6487750-6487769 None:intergenic 40.0%
AGGACAAATGGGTAAGGAAA+AGG + chr1_3:6488022-6488041 Msa0100040:exon 40.0%
AAGCTTGTAGATCAAGTGAC+CGG - chr1_3:6488102-6488121 None:intergenic 40.0%
TTGATAAGCGTGTGATTGAG+AGG + chr1_3:6488129-6488148 Msa0100040:CDS 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr1_3:6488180-6488199 Msa0100040:CDS 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr1_3:6488181-6488200 Msa0100040:CDS 40.0%
TCACAATTGACATTGCTCTG+TGG + chr1_3:6488240-6488259 Msa0100040:CDS 40.0%
TAATGAAATCCCTATGTCCG+GGG - chr1_3:6488307-6488326 None:intergenic 40.0%
!! CTGATCATTGATTCCACTAC+CGG + chr1_3:6488368-6488387 Msa0100040:CDS 40.0%
AATACCAGCTTCAAAACCAC+CGG - chr1_3:6488390-6488409 None:intergenic 40.0%
GAAGCTGGTATTTCAAAGGA+TGG + chr1_3:6488398-6488417 Msa0100040:CDS 40.0%
! TACCTACCTTTCGAGTACTT+GGG - chr1_3:6488603-6488622 None:intergenic 40.0%
! ATACCTACCTTTCGAGTACT+TGG - chr1_3:6488604-6488623 None:intergenic 40.0%
! GGAACAAACGGAATTTTGTC+TGG - chr1_3:6488678-6488697 None:intergenic 40.0%
AAACCAGAGATGGGAACAAA+CGG - chr1_3:6488690-6488709 None:intergenic 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr1_3:6488834-6488853 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr1_3:6488834-6488853 Msa0100040:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr1_3:6488843-6488862 Msa0100040:CDS 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + chr1_3:6488893-6488912 Msa0100040:CDS 40.0%
TTAAATCCCACATTGTCACC+GGG - chr1_3:6488999-6489018 None:intergenic 40.0%
TTATGTTGCCTCAAACTCCA+AGG + chr1_3:6489055-6489074 Msa0100040:CDS 40.0%
AGTGATCATCATGAATCACC+CGG + chr1_3:6489115-6489134 Msa0100040:CDS 40.0%
AAATTTGACAGCAATGTGGG+AGG - chr1_3:6489183-6489202 None:intergenic 40.0%
CAGCAAATTTGACAGCAATG+TGG - chr1_3:6489187-6489206 None:intergenic 40.0%
! TTCTGGAAAGGAGATTGAGA+AGG + chr1_3:6489232-6489251 Msa0100040:CDS 40.0%
GGAGCCAAATTCTTGAAGAA+TGG + chr1_3:6489253-6489272 Msa0100040:exon 40.0%
! TTCTTGAAGAATGGTGATGC+CGG + chr1_3:6489262-6489281 Msa0100040:exon 40.0%
!! GTTTTATTAAGTCCTCCGCT+GGG - chr1_3:6489424-6489443 None:intergenic 40.0%
!! TGTTTTATTAAGTCCTCCGC+TGG - chr1_3:6489425-6489444 None:intergenic 40.0%
GAACAAAAGTTGCGAGATGA+CGG - chr1_3:6489595-6489614 None:intergenic 40.0%
! CAACTTTTGTTCCCAGAACT+GGG + chr1_3:6489603-6489622 Msa0100040:three_prime_UTR 40.0%
AGCAAAAGTGGTTGGCACAA+TGG - chr1_3:6481060-6481079 None:intergenic 45.0%
AGAAGACACCGACAAAAGTG+TGG - chr1_3:6481107-6481126 None:intergenic 45.0%
GCAAACACTATTGTTGGACG+GGG - chr1_3:6481189-6481208 None:intergenic 45.0%
CGTCCAACAATAGTGTTTGC+AGG + chr1_3:6481189-6481208 Msa0100040:five_prime_UTR 45.0%
CCACCTGCAAACACTATTGT+TGG - chr1_3:6481195-6481214 None:intergenic 45.0%
CCAACAATAGTGTTTGCAGG+TGG + chr1_3:6481192-6481211 Msa0100040:five_prime_UTR 45.0%
! TGCAGGTGGTAAGGTGTTAT+TGG + chr1_3:6481206-6481225 Msa0100040:five_prime_UTR 45.0%
!!! GACTTTTTTGTTCGGGAGGA+AGG + chr1_3:6481250-6481269 Msa0100040:five_prime_UTR 45.0%
! TTTTGTTCGGGAGGAAGGTT+TGG + chr1_3:6481255-6481274 Msa0100040:five_prime_UTR 45.0%
GGAGACAAAGATGAGGGATA+AGG - chr1_3:6481398-6481417 None:intergenic 45.0%
GGAGTTGCATTAGGTTCCAA+TGG + chr1_3:6481437-6481456 Msa0100040:intron 45.0%
GCTCGAAGGATCATTCACAT+TGG + chr1_3:6481641-6481660 Msa0100040:intron 45.0%
TGATTGTTGTGCCAAGTCTG+AGG - chr1_3:6481692-6481711 None:intergenic 45.0%
GACGAAAAAGCTTCCGCTTA+AGG - chr1_3:6481760-6481779 None:intergenic 45.0%
!! TCTTACCAAGGGTGTTCAAG+CGG - chr1_3:6481834-6481853 None:intergenic 45.0%
CGGTTGGACAAGAATTCGAT+CGG - chr1_3:6481877-6481896 None:intergenic 45.0%
CCAATATCACAGTCAACGGT+TGG - chr1_3:6481893-6481912 None:intergenic 45.0%
! CCAACCGTTGACTGTGATAT+TGG + chr1_3:6481890-6481909 Msa0100040:intron 45.0%
GACTGTGATATTGGGTCATG+AGG + chr1_3:6481899-6481918 Msa0100040:intron 45.0%
GAGCAACAACACAAGTGAGT+TGG + chr1_3:6481942-6481961 Msa0100040:intron 45.0%
GTGAGTTAGAAGTCCCACAT+TGG - chr1_3:6482049-6482068 None:intergenic 45.0%
CATATGTCGTGGCAAGTATG+GGG - chr1_3:6482071-6482090 None:intergenic 45.0%
ATCGATCGGGAGTTACAATC+CGG - chr1_3:6482173-6482192 None:intergenic 45.0%
TCAACTGAGCTAAGCTTACG+AGG - chr1_3:6482426-6482445 None:intergenic 45.0%
TCTACTCATGGTGTAATCGC+CGG + chr1_3:6482695-6482714 Msa0100040:intron 45.0%
GAGGGATACTTCAGTCCTTA+AGG - chr1_3:6482814-6482833 None:intergenic 45.0%
TTATGCTTTGTCTGTGAGGC+AGG + chr1_3:6482961-6482980 Msa0100040:intron 45.0%
CTCGTGAACGACCGAAAATA+GGG - chr1_3:6483521-6483540 None:intergenic 45.0%
TCTCGTGAACGACCGAAAAT+AGG - chr1_3:6483522-6483541 None:intergenic 45.0%
TCTGGGTCCAAAACTAGACA+AGG - chr1_3:6483578-6483597 None:intergenic 45.0%
GAACTTCCGGAGAATGATGA+TGG + chr1_3:6483625-6483644 Msa0100040:five_prime_UTR 45.0%
AGCCACACACAAGCTATTCA+AGG + chr1_3:6483648-6483667 Msa0100040:five_prime_UTR 45.0%
TCTTACATGGTAGGGCTAGA+TGG + chr1_3:6485215-6485234 Msa0100040:intron 45.0%
CTTACATGGTAGGGCTAGAT+GGG + chr1_3:6485216-6485235 Msa0100040:intron 45.0%
! GGACGCAAATCTCTCTAAGA+GGG + chr1_3:6485237-6485256 Msa0100040:intron 45.0%
! GCAAATCTCTCTAAGAGGGT+AGG + chr1_3:6485241-6485260 Msa0100040:intron 45.0%
TCTAAGAGGGTAGGACTAGA+GGG + chr1_3:6485250-6485269 Msa0100040:intron 45.0%
GGTGGGATGGTCAAATCTAA+TGG - chr1_3:6485331-6485350 None:intergenic 45.0%
TCATTTCTCCGTGCTCTCTA+TGG + chr1_3:6485433-6485452 Msa0100040:intron 45.0%
GAAGAACACCATAGAGAGCA+CGG - chr1_3:6485444-6485463 None:intergenic 45.0%
AGGAAGAAGAACTTGAGGAG+TGG + chr1_3:6485981-6486000 Msa0100040:intron 45.0%
AGTCCTGGGTGCATTTAGTT+TGG - chr1_3:6486253-6486272 None:intergenic 45.0%
AGGATGCTACATCTAGTCCT+GGG - chr1_3:6486267-6486286 None:intergenic 45.0%
TAGGATGCTACATCTAGTCC+TGG - chr1_3:6486268-6486287 None:intergenic 45.0%
! ACATTCCTCTAGAAACGGGA+GGG - chr1_3:6486365-6486384 None:intergenic 45.0%
! AGGCCACATTCCTCTAGAAA+CGG - chr1_3:6486370-6486389 None:intergenic 45.0%
CTCCCAAATGATTCGTCACT+TGG + chr1_3:6486466-6486485 Msa0100040:intron 45.0%
GAACGCGAGTTTGATTCAAG+TGG - chr1_3:6486505-6486524 None:intergenic 45.0%
ATCAAACTCGCGTTCTAACC+AGG + chr1_3:6486510-6486529 Msa0100040:intron 45.0%
GGTCCTAGTAATACGGAGTT+CGG - chr1_3:6486685-6486704 None:intergenic 45.0%
TACTAGGACCACTTTCCCTT+AGG + chr1_3:6486695-6486714 Msa0100040:intron 45.0%
TTCCAGTTCCTAAGGGAAAG+TGG - chr1_3:6486706-6486725 None:intergenic 45.0%
ACTTTCCCTTAGGAACTGGA+AGG + chr1_3:6486705-6486724 Msa0100040:intron 45.0%
CGTTAACCTTCCAGTTCCTA+AGG - chr1_3:6486714-6486733 None:intergenic 45.0%
GATTGTAAGGGAGGGTTAGA+GGG - chr1_3:6487042-6487061 None:intergenic 45.0%
TGATTGTAAGGGAGGGTTAG+AGG - chr1_3:6487043-6487062 None:intergenic 45.0%
! GGTTTCTTGTTGGTTGCAAG+CGG - chr1_3:6487078-6487097 None:intergenic 45.0%
AGAAGAGAAGGAGAGCAGAT+AGG - chr1_3:6487109-6487128 None:intergenic 45.0%
CTCCTTCTCTTCTTCCTTCA+AGG + chr1_3:6487116-6487135 Msa0100040:intron 45.0%
GGGACTAAATTGACAGTAGG+TGG + chr1_3:6487506-6487525 Msa0100040:intron 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr1_3:6488101-6488120 Msa0100040:CDS 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr1_3:6488104-6488123 Msa0100040:CDS 45.0%
CTCAAAGCTGAACGTGAAAG+AGG + chr1_3:6488215-6488234 Msa0100040:CDS 45.0%
AATGAAATCCCTATGTCCGG+GGG - chr1_3:6488306-6488325 None:intergenic 45.0%
CAGAACAGCACAATCAGCTT+GGG - chr1_3:6488351-6488370 None:intergenic 45.0%
TCAGAACAGCACAATCAGCT+TGG - chr1_3:6488352-6488371 None:intergenic 45.0%
!! ATCATTGATTCCACTACCGG+TGG + chr1_3:6488371-6488390 Msa0100040:CDS 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr1_3:6488430-6488449 None:intergenic 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr1_3:6488445-6488464 None:intergenic 45.0%
! GTCTTGCTATCGTGAACAGA+TGG + chr1_3:6488566-6488585 Msa0100040:intron 45.0%
! TTTCGAGTACTTGGGTGTAG+TGG - chr1_3:6488595-6488614 None:intergenic 45.0%
ACTACACCCAAGTACTCGAA+AGG + chr1_3:6488594-6488613 Msa0100040:CDS 45.0%
ATTCCGTTTGTTCCCATCTC+TGG + chr1_3:6488684-6488703 Msa0100040:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1_3:6488692-6488711 Msa0100040:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1_3:6488693-6488712 Msa0100040:CDS 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1_3:6488699-6488718 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1_3:6488700-6488719 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr1_3:6488730-6488749 Msa0100040:CDS 45.0%
TTGGTCAAGAGCCTCAAGAA+GGG - chr1_3:6488769-6488788 None:intergenic 45.0%
TTTGGTCAAGAGCCTCAAGA+AGG - chr1_3:6488770-6488789 None:intergenic 45.0%
ACCAAATCAACGAGCCTAAG+AGG + chr1_3:6488784-6488803 Msa0100040:CDS 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr1_3:6488827-6488846 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr1_3:6488837-6488856 Msa0100040:CDS 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + chr1_3:6488888-6488907 Msa0100040:CDS 45.0%
GCAAAAGTGACAACCATTCC+AGG - chr1_3:6488909-6488928 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - chr1_3:6488931-6488950 None:intergenic 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - chr1_3:6488932-6488951 None:intergenic 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - chr1_3:6488933-6488952 None:intergenic 45.0%
GACAACTGAAGTGAAGTCTG+TGG + chr1_3:6488941-6488960 Msa0100040:CDS 45.0%
TGTAAAGTTAGCAGCCTCCT+TGG - chr1_3:6489090-6489109 None:intergenic 45.0%
GTGATCATCATGAATCACCC+GGG + chr1_3:6489116-6489135 Msa0100040:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr1_3:6489215-6489234 Msa0100040:CDS 45.0%
GAGAAAGTCTCAACCACCAT+GGG - chr1_3:6489313-6489332 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG - chr1_3:6489314-6489333 None:intergenic 45.0%
TTCTCTGAGTATCCTCCACT+TGG + chr1_3:6489328-6489347 Msa0100040:three_prime_UTR 45.0%
!! TGTGGCTGTTGGTGTTATCA+AGG + chr1_3:6489381-6489400 Msa0100040:three_prime_UTR 45.0%
!! TGTTGGTGTTATCAAGGCTG+TGG + chr1_3:6489387-6489406 Msa0100040:three_prime_UTR 45.0%
TATCAAGGCTGTGGAGAAGA+AGG + chr1_3:6489396-6489415 Msa0100040:three_prime_UTR 45.0%
CTTGGATAGATCTTCCTGCA+CGG - chr1_3:6489473-6489492 None:intergenic 45.0%
! GCAACTTTTGTTCCCAGAAC+TGG + chr1_3:6489602-6489621 Msa0100040:three_prime_UTR 45.0%
TCGATCAAGAACCCAGTTCT+GGG - chr1_3:6489617-6489636 None:intergenic 45.0%
AGAACTGGGTTCTTGATCGA+CGG + chr1_3:6489617-6489636 Msa0100040:three_prime_UTR 45.0%
! TAGCAGCTAGTCTGCTGATT+TGG + chr1_3:6489707-6489726 Msa0100040:three_prime_UTR 45.0%
!! CTAGTCTGCTGATTTGGTTC+TGG + chr1_3:6489713-6489732 Msa0100040:three_prime_UTR 45.0%
!!! TTATTATTTTAATTTTAACA+AGG + chr1_3:6486885-6486904 Msa0100040:intron 5.0%
CGAAAGTTAGGACCCGATTG+AGG - chr1_3:6482212-6482231 None:intergenic 50.0%
CTTGGCAAGTCAGCACTTCT+GGG - chr1_3:6483595-6483614 None:intergenic 50.0%
ACTTGGCAAGTCAGCACTTC+TGG - chr1_3:6483596-6483615 None:intergenic 50.0%
GTGGCTCCATCATCATTCTC+CGG - chr1_3:6483634-6483653 None:intergenic 50.0%
GCGCAAATGCAAATCCTCCA+TGG + chr1_3:6484636-6484655 Msa0100040:intron 50.0%
ACTCAGGAGGCGATTGAGAA+CGG + chr1_3:6484890-6484909 Msa0100040:intron 50.0%
GCGATTGAGAACGGATCATG+AGG + chr1_3:6484899-6484918 Msa0100040:intron 50.0%
GATTTGCGCCCCATTCATCT+AGG - chr1_3:6485193-6485212 None:intergenic 50.0%
GGGCGCAAATCTCTCTTACA+TGG + chr1_3:6485202-6485221 Msa0100040:intron 50.0%
GGGACGCAAATCTCTCTAAG+AGG + chr1_3:6485236-6485255 Msa0100040:intron 50.0%
! CTCTAAGAGGGTAGGACTAG+AGG + chr1_3:6485249-6485268 Msa0100040:intron 50.0%
CTTGAGGAGTGGAGTGATAG+TGG + chr1_3:6485992-6486011 Msa0100040:intron 50.0%
GGTCCAAACTAAATGCACCC+AGG + chr1_3:6486247-6486266 Msa0100040:intron 50.0%
! GTTAACCCTCCCGTTTCTAG+AGG + chr1_3:6486357-6486376 Msa0100040:intron 50.0%
! CACATTCCTCTAGAAACGGG+AGG - chr1_3:6486366-6486385 None:intergenic 50.0%
! CTCCCGTTTCTAGAGGAATG+TGG + chr1_3:6486364-6486383 Msa0100040:intron 50.0%
! GGCCACATTCCTCTAGAAAC+GGG - chr1_3:6486369-6486388 None:intergenic 50.0%
GTTCGGTCGTGAGGTAAAGA+TGG - chr1_3:6486668-6486687 None:intergenic 50.0%
TAATACGGAGTTCGGTCGTG+AGG - chr1_3:6486677-6486696 None:intergenic 50.0%
CGACCGAACTCCGTATTACT+AGG + chr1_3:6486679-6486698 Msa0100040:intron 50.0%
GACCACTTTCCCTTAGGAAC+TGG + chr1_3:6486701-6486720 Msa0100040:intron 50.0%
! CGTGATTCTATCCGACTCGA+GGG - chr1_3:6486828-6486847 None:intergenic 50.0%
! TCGTGATTCTATCCGACTCG+AGG - chr1_3:6486829-6486848 None:intergenic 50.0%
! CTTGTTGGTTGCAAGCGGTA+GGG - chr1_3:6487073-6487092 None:intergenic 50.0%
! TCTTGTTGGTTGCAAGCGGT+AGG - chr1_3:6487074-6487093 None:intergenic 50.0%
GGAACGCTAGGGTTTCTTGT+TGG - chr1_3:6487088-6487107 None:intergenic 50.0%
GAGAGCAGATAGGAACGCTA+GGG - chr1_3:6487099-6487118 None:intergenic 50.0%
GGTCGTTCTGCCGAAATACT+CGG + chr1_3:6487737-6487756 Msa0100040:intron 50.0%
!! TCATTGGCCATGTCGACTCT+GGG + chr1_3:6488063-6488082 Msa0100040:CDS 50.0%
TTGACTTCCCAGAGTCGACA+TGG - chr1_3:6488073-6488092 None:intergenic 50.0%
CTTGTAGATCAAGTGACCGG+TGG - chr1_3:6488099-6488118 None:intergenic 50.0%
!! GTTCAGCTTTGAGCTTGTCG+AGG - chr1_3:6488208-6488227 None:intergenic 50.0%
AGCTTCAAAACCACCGGTAG+TGG - chr1_3:6488384-6488403 None:intergenic 50.0%
!!! ACTACCGGTGGTTTTGAAGC+TGG + chr1_3:6488383-6488402 Msa0100040:CDS 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr1_3:6488429-6488448 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr1_3:6488437-6488456 Msa0100040:CDS 50.0%
CACCCAAGTACTCGAAAGGT+AGG + chr1_3:6488598-6488617 Msa0100040:CDS 50.0%
TCAAGAGCCTCAAGAAGGGT+TGG - chr1_3:6488765-6488784 None:intergenic 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG - chr1_3:6488788-6488807 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr1_3:6488823-6488842 None:intergenic 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + chr1_3:6488915-6488934 Msa0100040:CDS 50.0%
GCATCATGAAGCTCTCACTG+AGG + chr1_3:6488968-6488987 Msa0100040:CDS 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + chr1_3:6489032-6489051 Msa0100040:CDS 50.0%
AGGGTCATCCTTGGAGTTTG+AGG - chr1_3:6489066-6489085 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+CGG - chr1_3:6489137-6489156 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr1_3:6489142-6489161 None:intergenic 50.0%
AGGTGTGGCAGTCAAGAACA+GGG - chr1_3:6489163-6489182 None:intergenic 50.0%
!! GATTGACAGGCGTTCTGGAA+AGG + chr1_3:6489220-6489239 Msa0100040:CDS 50.0%
GCATATCCCTGACAGCGAAA+CGG - chr1_3:6489354-6489373 None:intergenic 50.0%
CAGGGATATGCGTCAAACTG+TGG + chr1_3:6489363-6489382 Msa0100040:three_prime_UTR 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr1_3:6489370-6489389 Msa0100040:three_prime_UTR 50.0%
GAAGAAGAAGTGAACCGTGC+AGG + chr1_3:6489456-6489475 Msa0100040:three_prime_UTR 50.0%
CGTGCAGGAAGATCTATCCA+AGG + chr1_3:6489471-6489490 Msa0100040:three_prime_UTR 50.0%
! AAAGTTGCGAGATGACGGTG+CGG - chr1_3:6489590-6489609 None:intergenic 50.0%
GTCGATCAAGAACCCAGTTC+TGG - chr1_3:6489618-6489637 None:intergenic 50.0%
CAAGGAAGCGGTCGAGAACA+AGG - chr1_3:6480892-6480911 None:intergenic 55.0%
GGCGTGTCTGTTGATGTGCT+GGG - chr1_3:6481813-6481832 None:intergenic 55.0%
TGGTTGCAAGCGGTAGGGTT+TGG - chr1_3:6487068-6487087 None:intergenic 55.0%
GGAGAGCAGATAGGAACGCT+AGG - chr1_3:6487100-6487119 None:intergenic 55.0%
!! GTCATTGGCCATGTCGACTC+TGG + chr1_3:6488062-6488081 Msa0100040:CDS 55.0%
TCTGGGAAGTCAACCACCAC+CGG + chr1_3:6488080-6488099 Msa0100040:CDS 55.0%
GTAGATCAAGTGACCGGTGG+TGG - chr1_3:6488096-6488115 None:intergenic 55.0%
CAAGGGTCCAACCCTTCTTG+AGG + chr1_3:6488755-6488774 Msa0100040:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr1_3:6488822-6488841 None:intergenic 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr1_3:6488824-6488843 None:intergenic 55.0%
AGGAATTGGGACTGTGCCTG+TGG + chr1_3:6488857-6488876 Msa0100040:CDS 55.0%
GGAATTGGGACTGTGCCTGT+GGG + chr1_3:6488858-6488877 Msa0100040:CDS 55.0%
GAATTGGGACTGTGCCTGTG+GGG + chr1_3:6488859-6488878 Msa0100040:CDS 55.0%
GCTCTTCCCGGTGACAATGT+GGG + chr1_3:6488990-6489009 Msa0100040:CDS 55.0%
AGTTAGCAGCCTCCTTGGCA+GGG - chr1_3:6489085-6489104 None:intergenic 55.0%
AAGTTAGCAGCCTCCTTGGC+AGG - chr1_3:6489086-6489105 None:intergenic 55.0%
ATGAATCACCCGGGCCAGAT+TGG + chr1_3:6489125-6489144 Msa0100040:CDS 55.0%
AGCCATTTCCAATCTGGCCC+GGG - chr1_3:6489136-6489155 None:intergenic 55.0%
GGTGTGGCAGTCAAGAACAG+GGG - chr1_3:6489162-6489181 None:intergenic 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - chr1_3:6489164-6489183 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1_3:6489178-6489197 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr1_3:6489294-6489313 Msa0100040:three_prime_UTR 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr1_3:6489304-6489323 None:intergenic 55.0%
AGTCTCAACCACCATGGGCT+TGG - chr1_3:6489308-6489327 None:intergenic 55.0%
ACTTGGCCGTTTCGCTGTCA+GGG + chr1_3:6489345-6489364 Msa0100040:three_prime_UTR 55.0%
GTGGAGAAGAAGGATCCCAG+CGG + chr1_3:6489406-6489425 Msa0100040:three_prime_UTR 55.0%
ACTGGGTTCTTGATCGACGG+TGG + chr1_3:6489620-6489639 Msa0100040:three_prime_UTR 55.0%
GTTCTTGATCGACGGTGGCA+GGG + chr1_3:6489625-6489644 Msa0100040:three_prime_UTR 55.0%
GGGTTATGAGGGGAGCTCGA+AGG + chr1_3:6481627-6481646 Msa0100040:intron 60.0%
GATGTGCTGGGCGTCAACGA+AGG - chr1_3:6481801-6481820 None:intergenic 60.0%
CGGCGTGTCTGTTGATGTGC+TGG - chr1_3:6481814-6481833 None:intergenic 60.0%
ACACGCCGCTTGAACACCCT+TGG + chr1_3:6481826-6481845 Msa0100040:intron 60.0%
TGCACTGTCATCGATGCCCC+CGG + chr1_3:6488287-6488306 Msa0100040:CDS 60.0%
TCATCGATGCCCCCGGACAT+AGG + chr1_3:6488294-6488313 Msa0100040:CDS 60.0%
CATCGATGCCCCCGGACATA+GGG + chr1_3:6488295-6488314 Msa0100040:CDS 60.0%
TGGTAGTCGGAGGGGCTTGT+CGG - chr1_3:6488814-6488833 None:intergenic 60.0%
GCTCTCACTGAGGCTCTTCC+CGG + chr1_3:6488978-6488997 Msa0100040:CDS 60.0%
GGCTCTTCCCGGTGACAATG+TGG + chr1_3:6488989-6489008 Msa0100040:CDS 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr1_3:6489070-6489089 Msa0100040:CDS 60.0%
CTCCTTGGCAGGGTCATCCT+TGG - chr1_3:6489075-6489094 None:intergenic 60.0%
CAAGGATGACCCTGCCAAGG+AGG + chr1_3:6489073-6489092 Msa0100040:CDS 60.0%
CACCCGGGCCAGATTGGAAA+TGG + chr1_3:6489131-6489150 Msa0100040:CDS 60.0%
GATTCCCACCAAGCCCATGG+TGG + chr1_3:6489297-6489316 Msa0100040:three_prime_UTR 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr1_3:6489305-6489324 None:intergenic 60.0%
ACAGCGAAACGGCCAAGTGG+AGG - chr1_3:6489343-6489362 None:intergenic 60.0%
CTGACAGCGAAACGGCCAAG+TGG - chr1_3:6489346-6489365 None:intergenic 60.0%
CACTTGGCCGTTTCGCTGTC+AGG + chr1_3:6489344-6489363 Msa0100040:three_prime_UTR 60.0%
GAGAAGAAGGATCCCAGCGG+AGG + chr1_3:6489409-6489428 Msa0100040:three_prime_UTR 60.0%
GGTTCTTGATCGACGGTGGC+AGG + chr1_3:6489624-6489643 Msa0100040:three_prime_UTR 60.0%
GGCTTGTCGGAGGGCCTCTT+AGG - chr1_3:6488801-6488820 None:intergenic 65.0%
AGTCGGAGGGGCTTGTCGGA+GGG - chr1_3:6488810-6488829 None:intergenic 65.0%
TAGTCGGAGGGGCTTGTCGG+AGG - chr1_3:6488811-6488830 None:intergenic 65.0%
GCCCCTCCGACTACCACTTC+AGG + chr1_3:6488818-6488837 Msa0100040:CDS 65.0%
CCAGTCTCGACACGCCCCAC+AGG - chr1_3:6488876-6488895 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + chr1_3:6488873-6488892 Msa0100040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 6480801 6489801 6480801 ID=Msa0100040;Name=Msa0100040
chr1_3 mRNA 6480801 6489801 6480801 ID=Msa0100040-mRNA-1;Parent=Msa0100040;Name=Msa0100040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=788|1|1|1|0.2|0|6|502|381
chr1_3 exon 6480801 6481348 6480801 ID=Msa0100040-mRNA-1:exon:2446;Parent=Msa0100040-mRNA-1
chr1_3 exon 6482983 6483104 6482983 ID=Msa0100040-mRNA-1:exon:2447;Parent=Msa0100040-mRNA-1
chr1_3 exon 6483584 6483669 6483584 ID=Msa0100040-mRNA-1:exon:2448;Parent=Msa0100040-mRNA-1
chr1_3 exon 6487997 6488490 6487997 ID=Msa0100040-mRNA-1:exon:2449;Parent=Msa0100040-mRNA-1
chr1_3 exon 6488585 6489505 6488585 ID=Msa0100040-mRNA-1:exon:2450;Parent=Msa0100040-mRNA-1
chr1_3 exon 6489537 6489801 6489537 ID=Msa0100040-mRNA-1:exon:2451;Parent=Msa0100040-mRNA-1
chr1_3 five_prime_UTR 6480801 6481348 6480801 ID=Msa0100040-mRNA-1:five_prime_utr;Parent=Msa0100040-mRNA-1
chr1_3 five_prime_UTR 6482983 6483104 6482983 ID=Msa0100040-mRNA-1:five_prime_utr;Parent=Msa0100040-mRNA-1
chr1_3 five_prime_UTR 6483584 6483669 6483584 ID=Msa0100040-mRNA-1:five_prime_utr;Parent=Msa0100040-mRNA-1
chr1_3 five_prime_UTR 6487997 6488028 6487997 ID=Msa0100040-mRNA-1:five_prime_utr;Parent=Msa0100040-mRNA-1
chr1_3 CDS 6488029 6488490 6488029 ID=Msa0100040-mRNA-1:cds;Parent=Msa0100040-mRNA-1
chr1_3 CDS 6488585 6489268 6488585 ID=Msa0100040-mRNA-1:cds;Parent=Msa0100040-mRNA-1
chr1_3 three_prime_UTR 6489269 6489505 6489269 ID=Msa0100040-mRNA-1:three_prime_utr;Parent=Msa0100040-mRNA-1
chr1_3 three_prime_UTR 6489537 6489801 6489537 ID=Msa0100040-mRNA-1:three_prime_utr;Parent=Msa0100040-mRNA-1
Gene Sequence

>Msa0100040

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACCACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGATAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTCCTCGACAAGCTCAAAGCTGAACGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACTACTAAGTACTACTGCACTGTCATCGATGCCCCCGGACATAGGGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGATTGTGCTGTTCTGATCATTGATTCCACTACCGGTGGTTTTGAAGCTGGTATTTCAAAGGATGGGCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGCAACAAGATGGATGCCACTACACCCAAGTACTCGAAAGGTAGGTATGAAGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCGTTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATCGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCTCTTGACCAAATCAACGAGCCTAAGAGGCCCTCCGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGGACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTGAAGTCTGTGGAGATGCATCATGAAGCTCTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAACGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCTAACTTTACATCTCAAGTGATCATCATGAATCACCCGGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAATTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGAAAGGAGATTGAGAAGGAGCCAAATTCTTGA
Protein sequence

>Msa0100040

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPNS*