AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297270 MtrunA17_Chr2g0320581 94.444 504 28 0 1 504 1 504 0.0 999
Msa0297270 MtrunA17_Chr2g0315161 60.288 486 177 7 6 489 3 474 0.0 592
Msa0297270 MtrunA17_Chr7g0266851 48.606 502 236 8 5 492 5 498 6.83e-160 463
Msa0297270 MtrunA17_Chr7g0266831 49.115 452 216 5 56 493 66 517 4.48e-150 439
Msa0297270 MtrunA17_Chr4g0054411 44.161 471 218 7 56 489 56 518 6.91e-132 392
Msa0297270 MtrunA17_Chr5g0405091 30.921 456 226 27 11 435 7 404 1.43e-32 129
Msa0297270 MtrunA17_Chr7g0216291 64.474 76 25 1 119 192 3 78 4.26e-25 98.6
Msa0297270 MtrunA17_Chr8g0372201 28.053 303 172 15 183 465 28 304 8.61e-15 75.9
Msa0297270 MtrunA17_Chr2g0316381 58.696 46 19 0 452 497 8 53 5.66e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297270 AT5G22860.1 51.613 496 224 7 13 496 8 499 2.38e-175 503
Msa0297270 AT5G22860.4 51.762 454 203 7 13 454 8 457 3.79e-158 457
Msa0297270 AT5G22860.2 51.835 436 194 7 13 436 8 439 3.95e-152 441
Msa0297270 AT5G22860.3 51.835 436 194 7 13 436 8 439 3.95e-152 441
Msa0297270 AT2G24280.1 44.400 500 246 6 11 492 5 490 3.14e-147 431
Msa0297270 AT5G65760.1 46.341 451 221 7 56 491 59 503 4.94e-140 413
Msa0297270 AT5G22860.7 50.614 407 185 7 13 407 8 410 3.97e-135 400
Msa0297270 AT5G22860.5 50.614 407 185 7 13 407 8 410 3.97e-135 400
Msa0297270 AT5G22860.6 50.614 407 185 7 13 407 8 410 3.97e-135 400
Msa0297270 AT2G24280.2 43.919 444 217 6 11 436 5 434 2.40e-125 373
Msa0297270 AT5G22860.8 50.139 359 164 6 13 360 8 362 2.30e-114 342
Msa0297270 AT3G28680.1 42.529 174 95 4 190 359 18 190 2.91e-42 149
Msa0297270 AT4G36195.2 27.340 406 232 15 56 435 46 414 1.21e-24 107
Msa0297270 AT4G36195.3 27.340 406 232 15 56 435 46 414 1.38e-24 107
Msa0297270 AT4G36195.1 27.340 406 232 15 56 435 46 414 1.38e-24 107
Msa0297270 AT4G36190.1 28.010 407 228 17 56 435 46 414 3.74e-24 105
Msa0297270 AT2G18080.1 26.141 482 255 23 58 487 48 480 9.20e-22 98.6

Find 108 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTTGCAATGTCGTTTA+AGG 0.140246 2_3:+50955055 None:intergenic
ATATACTAAAAGAGCTTTAA+AGG 0.168188 2_3:+50954806 None:intergenic
ATTTGATCAATTTCAAATAT+TGG 0.182290 2_3:-50954932 Msa0297270:CDS
CATTGGATTACTACTTATTA+TGG 0.189882 2_3:-50951298 Msa0297270:CDS
TCACAATTACTGGGGAGTTT+TGG 0.211706 2_3:+50954508 None:intergenic
TTTGATCAATTTCAAATATT+GGG 0.216568 2_3:-50954931 Msa0297270:CDS
TAAAATGTTTCAACATCTTT+TGG 0.224312 2_3:+50955020 None:intergenic
TTATATCAGCATCGGTATTA+TGG 0.238679 2_3:-50954660 Msa0297270:intron
ATCATATATATCAATTGTTT+TGG 0.250067 2_3:+50949382 None:intergenic
TCACTTGGCCATTGGTGCTT+TGG 0.266851 2_3:-50954132 Msa0297270:CDS
TTTCATTGCAACAAGTTATA+AGG 0.279877 2_3:+50955190 None:intergenic
CAACTCAAAAGAATGGTTTA+AGG 0.287048 2_3:+50953232 None:intergenic
AAACGAGTTCTTCAAAAGTT+TGG 0.309801 2_3:-50950497 Msa0297270:CDS
GATCCTCCAATCACAATTAC+TGG 0.319018 2_3:+50954498 None:intergenic
CAGTGCTTGCTGCATGGTTT+AGG 0.320590 2_3:-50954166 Msa0297270:CDS
CCACTACATATCACGGTAAC+TGG 0.327485 2_3:+50953149 None:intergenic
TGCTCCAATATTTGTCTACT+TGG 0.333285 2_3:-50954892 Msa0297270:CDS
GAACCATCTATTGCTTGTTC+TGG 0.339066 2_3:+50954867 None:intergenic
GGACCCAAGTAGACAAATAT+TGG 0.343910 2_3:+50954888 None:intergenic
GTCCAGTATTATATTGATCT+TGG 0.345948 2_3:-50949429 Msa0297270:CDS
TCTTTCATTCATATTTGAAT+TGG 0.347339 2_3:-50955239 None:intergenic
TATTGCAGGATCCCATTGTT+TGG 0.351682 2_3:-50949535 Msa0297270:intron
CGTTGTTCAATCAACCATCT+TGG 0.362655 2_3:+50949486 None:intergenic
GCTTACCCGGCACTACTATA+AGG 0.362908 2_3:+50950440 None:intergenic
CTAAGAATTGAAAGACCATT+TGG 0.372278 2_3:+50953536 None:intergenic
GGAATTGATAAAGCTTCTCT+TGG 0.383676 2_3:-50953128 Msa0297270:CDS
ATCCTTGATAAGATATATTC+AGG 0.388285 2_3:-50953098 Msa0297270:CDS
GAAAGATGCAAGAAAGAATA+TGG 0.398219 2_3:-50951337 Msa0297270:CDS
GTGTCTCACCTCGCCCTCAT+TGG 0.398503 2_3:-50951315 Msa0297270:CDS
ATGAAACAATATTGAACTCT+TGG 0.400378 2_3:-50953586 Msa0297270:CDS
ACAAATCTCTTTAAGTCAAA+AGG 0.401588 2_3:+50951361 None:intergenic
CTTAAACGACATTGCAACCT+TGG 0.412069 2_3:-50955054 Msa0297270:CDS
TATGGAAAATCAATACCGTT+TGG 0.413960 2_3:-50954642 Msa0297270:CDS
TTAAATGTATTATAGCTTTG+TGG 0.421207 2_3:+50954963 None:intergenic
TCGCAACAAGACTCTTTGAT+AGG 0.425346 2_3:+50950315 None:intergenic
CACCAAGATCAATATAATAC+TGG 0.425901 2_3:+50949427 None:intergenic
AACTCAAAAGAATGGTTTAA+GGG 0.443392 2_3:+50953233 None:intergenic
TTCAGGTGTTGTGGCTTACA+AGG 0.449221 2_3:-50953081 Msa0297270:CDS
AACTCCCCAGTAATTGTGAT+TGG 0.451013 2_3:-50954504 Msa0297270:CDS
ACAACATCGAAATAAGCATT+TGG 0.451510 2_3:+50954068 None:intergenic
ATCACGGTAACTGGATAGTC+TGG 0.453975 2_3:+50953158 None:intergenic
AAAGATCCTTATAGTAGTGC+CGG 0.462281 2_3:-50950446 Msa0297270:CDS
AATCAATACCGTTTGGATCA+AGG 0.470545 2_3:-50954635 Msa0297270:CDS
TAGGAGTGGGATTGATAGAA+TGG 0.473688 2_3:+50955123 None:intergenic
ACTAAAAGAGCTTTAAAGGT+TGG 0.474337 2_3:+50954810 None:intergenic
GGTCCAGAACAAGCAATAGA+TGG 0.474492 2_3:-50954870 Msa0297270:CDS
GATGGTTCTCCTAAGAGTAT+AGG 0.476783 2_3:-50954852 Msa0297270:CDS
ATCAATACCGTTTGGATCAA+GGG 0.480317 2_3:-50954634 Msa0297270:CDS
GCTCCAATATTTGTCTACTT+GGG 0.484351 2_3:-50954891 Msa0297270:CDS
GTTGCGATCCATGCGATCAA+TGG 0.490171 2_3:-50950299 Msa0297270:intron
AGTGAAATGGTGATGCCTTT+CGG 0.492731 2_3:-50951415 Msa0297270:CDS
AATTTAGACATGCAGTGAAA+TGG 0.492903 2_3:-50951428 Msa0297270:intron
GTTGTGGCTTACAAGGGAAA+TGG 0.503894 2_3:-50953074 Msa0297270:CDS
AACGAGTTAATATATATCAA+AGG 0.509970 2_3:-50949356 Msa0297270:three_prime_UTR
AAATATCCTCACTTGGCCAT+TGG 0.510773 2_3:-50954140 Msa0297270:CDS
AGGTAGAATATCCAAACAAT+GGG 0.510816 2_3:+50949524 None:intergenic
TTCAAGAATGCAAACACACT+TGG 0.510819 2_3:-50954603 Msa0297270:CDS
ATTGATCTTGGTGCACTCCA+TGG 0.511982 2_3:-50949417 Msa0297270:CDS
AGACGAGGCCAAAGCACCAA+TGG 0.515427 2_3:+50954124 None:intergenic
ACGAGTTAATATATATCAAA+GGG 0.519659 2_3:-50949355 Msa0297270:three_prime_UTR
ATCAATTTCAAATATTGGGG+TGG 0.520871 2_3:-50954927 Msa0297270:CDS
ATATCATCAAAGTAGAGGAT+TGG 0.521474 2_3:+50954098 None:intergenic
ATGGTGATGCCTTTCGGCAT+AGG 0.523170 2_3:-50951409 Msa0297270:CDS
AAAGTAGCGTCGCAGCCAAA+TGG 0.523922 2_3:-50953551 Msa0297270:CDS
TAAGATATATTCAGGTGTTG+TGG 0.531386 2_3:-50953090 Msa0297270:CDS
CACCTGAATATATCTTATCA+AGG 0.532694 2_3:+50953096 None:intergenic
TTGATCAATTTCAAATATTG+GGG 0.533645 2_3:-50954930 Msa0297270:CDS
ATCCTCCAATCACAATTACT+GGG 0.536985 2_3:+50954499 None:intergenic
AAGGTAGAATATCCAAACAA+TGG 0.537131 2_3:+50949523 None:intergenic
CCTCTGACAACTCAAAAGAA+TGG 0.537469 2_3:+50953225 None:intergenic
ATCAATTCCACTACATATCA+CGG 0.544440 2_3:+50953142 None:intergenic
CTCTTTAAGTCAAAAGGAGA+AGG 0.546964 2_3:+50951367 None:intergenic
CAAAAGAAAGTGATCCAAGA+TGG 0.547883 2_3:-50949500 Msa0297270:CDS
AGACAGAAGTGGGTTGGAGA+TGG 0.550445 2_3:-50953016 Msa0297270:CDS
TGTCAATGAGTGTGTAGGAG+TGG 0.553790 2_3:+50955109 None:intergenic
TCCCCAGTAATTGTGATTGG+AGG 0.556726 2_3:-50954501 Msa0297270:CDS
AAGATCCTTATAGTAGTGCC+GGG 0.557200 2_3:-50950445 Msa0297270:intron
AGAAGTGGGTTGGAGATGGC+AGG 0.557628 2_3:-50953012 Msa0297270:intron
TAGGCTCAAATATCCTCACT+TGG 0.561155 2_3:-50954147 Msa0297270:CDS
TATCTGAGACAGAAGTGGGT+TGG 0.562993 2_3:-50953022 Msa0297270:CDS
CCAGTTACCGTGATATGTAG+TGG 0.564278 2_3:-50953149 Msa0297270:CDS
TGGATTACTACTTATTATGG+AGG 0.567337 2_3:-50951295 Msa0297270:CDS
ACCACTTCAAGTTGTTCACA+TGG 0.568293 2_3:-50955166 Msa0297270:CDS
ATTGTGATTGGAGGATCATA+TGG 0.568935 2_3:-50954492 Msa0297270:CDS
GCTTCTTCCCTTGATCCAAA+CGG 0.574524 2_3:+50954627 None:intergenic
AAGACATACCATTGATCGCA+TGG 0.576013 2_3:+50950291 None:intergenic
GATTGAACAACGAAATAAAG+AGG 0.581874 2_3:-50949475 Msa0297270:CDS
AAATATATCTGAGACAGAAG+TGG 0.583630 2_3:-50953027 Msa0297270:CDS
TCGTCGAATGGAGATAACCT+TGG 0.586295 2_3:+50955083 None:intergenic
AGGTCGAGATTATTCAAGAG+TGG 0.591638 2_3:-50949455 Msa0297270:CDS
GTCAATGAGTGTGTAGGAGT+GGG 0.593257 2_3:+50955110 None:intergenic
TATACACAGTGCTTGCTGCA+TGG 0.596133 2_3:-50954172 Msa0297270:intron
AATATATCTGAGACAGAAGT+GGG 0.597565 2_3:-50953026 Msa0297270:CDS
AATAAGTAGTAATCCAATGA+GGG 0.598968 2_3:+50951302 None:intergenic
GTAGTAATCCAATGAGGGCG+AGG 0.600782 2_3:+50951307 None:intergenic
GTAGAGGATTGGAGCAGACG+AGG 0.605838 2_3:+50954109 None:intergenic
TCAGGTGTTGTGGCTTACAA+GGG 0.616951 2_3:-50953080 Msa0297270:CDS
TAATAAGTAGTAATCCAATG+AGG 0.619229 2_3:+50951301 None:intergenic
ATGTAATATCATCAAAGTAG+AGG 0.625566 2_3:+50954093 None:intergenic
ACTCAAAAGAATGGTTTAAG+GGG 0.631595 2_3:+50953234 None:intergenic
GTATCATTTCCTATGCCGAA+AGG 0.642694 2_3:+50951400 None:intergenic
GCCATGTGAACAACTTGAAG+TGG 0.645854 2_3:+50955165 None:intergenic
GGTATTGTCAATGAGTGTGT+AGG 0.656725 2_3:+50955104 None:intergenic
AAAGCACCAATGGCCAAGTG+AGG 0.660296 2_3:+50954134 None:intergenic
GTGATTGGAGGATCATATGG+TGG 0.676251 2_3:-50954489 Msa0297270:CDS
ACGGTAACTGGATAGTCTGG+AGG 0.692907 2_3:+50953161 None:intergenic
CACACTCATTGACAATACCA+AGG 0.695882 2_3:-50955100 Msa0297270:CDS
TCCTCCAATCACAATTACTG+GGG 0.714063 2_3:+50954500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTATAATAATTTTA+AGG + chr2_3:50954824-50954843 None:intergenic 0.0%
!! AAAAACTAAATAAAAGAATA+CGG + chr2_3:50950344-50950363 None:intergenic 10.0%
!!! AAAAAATTAGTTTATTTACA+GGG + chr2_3:50950609-50950628 None:intergenic 10.0%
!!! CTAATTTTTTCTTTAAAATT+TGG - chr2_3:50950619-50950638 Msa0297270:intron 10.0%
!!! AAAATCTTATTTTTTTAATG+CGG + chr2_3:50951723-50951742 None:intergenic 10.0%
!! ACAAAAAAAATTCTTAAAAA+GGG + chr2_3:50952576-50952595 None:intergenic 10.0%
!! AAAAAATGTATAATAAATAG+GGG + chr2_3:50952659-50952678 None:intergenic 10.0%
!! GAAAAAAATGTATAATAAAT+AGG + chr2_3:50952661-50952680 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGAAAGAA+TGG - chr2_3:50954324-50954343 Msa0297270:intron 10.0%
!! TTATGTATGTAAATTTATAA+TGG - chr2_3:50954617-50954636 Msa0297270:CDS 10.0%
!! ATTTGATCAATTTCAAATAT+TGG - chr2_3:50949656-50949675 Msa0297270:intron 15.0%
!! TTTGATCAATTTCAAATATT+GGG - chr2_3:50949657-50949676 Msa0297270:intron 15.0%
!!! TAATAATTTTATATCAGCAT+CGG - chr2_3:50949920-50949939 Msa0297270:intron 15.0%
!!! TAAAGGTTTTTGAATTTTTT+AGG + chr2_3:50950281-50950300 None:intergenic 15.0%
!!! GAAAAAATTAGTTTATTTAC+AGG + chr2_3:50950610-50950629 None:intergenic 15.0%
!!! AAATCTATTCATTTTGAAAT+TGG + chr2_3:50950761-50950780 None:intergenic 15.0%
!! AAACAAAACAAAAAATTACA+AGG - chr2_3:50950844-50950863 Msa0297270:intron 15.0%
!!! TAACTAATTAATTCATTTTC+AGG - chr2_3:50950961-50950980 Msa0297270:intron 15.0%
!! GATAATGCATAATATATATA+GGG - chr2_3:50951200-50951219 Msa0297270:intron 15.0%
!!! AAATCTTATTTTTTTAATGC+GGG + chr2_3:50951722-50951741 None:intergenic 15.0%
!! GACAAAAAAAATTCTTAAAA+AGG + chr2_3:50952577-50952596 None:intergenic 15.0%
!! AGTCAAATAAATGTAATAAT+TGG - chr2_3:50952870-50952889 Msa0297270:intron 15.0%
!! AATAAATGTAATAATTGGTT+AGG - chr2_3:50952875-50952894 Msa0297270:intron 15.0%
!!! TTTTTATCTTTGCATATATA+TGG - chr2_3:50953106-50953125 Msa0297270:CDS 15.0%
!! AAGTTAGTAGTATTAATTAA+GGG + chr2_3:50953703-50953722 None:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+AGG + chr2_3:50953704-50953723 None:intergenic 15.0%
!! TTTAATACATATACAAACAA+AGG - chr2_3:50953746-50953765 Msa0297270:intron 15.0%
!!! ATTGTTACATTTTTCTTTTT+TGG + chr2_3:50954025-50954044 None:intergenic 15.0%
!!! CAATTCAATTTTGAATTTTA+CGG + chr2_3:50954175-50954194 None:intergenic 15.0%
!! ATCAGTTAAGTTAAAATTTA+TGG + chr2_3:50954536-50954555 None:intergenic 15.0%
!! TTTATACTACTAAAATATTG+TGG - chr2_3:50954883-50954902 Msa0297270:CDS 15.0%
!! AAATAATTTAGTGACTAAAT+TGG - chr2_3:50954953-50954972 Msa0297270:CDS 15.0%
!!! ATCATATATATCAATTGTTT+TGG + chr2_3:50955209-50955228 None:intergenic 15.0%
!!! TAAAATGTTTCAACATCTTT+TGG + chr2_3:50949571-50949590 None:intergenic 20.0%
!!! TTAAATGTATTATAGCTTTG+TGG + chr2_3:50949628-50949647 None:intergenic 20.0%
!! TTGATCAATTTCAAATATTG+GGG - chr2_3:50949658-50949677 Msa0297270:intron 20.0%
!!! ATATACTAAAAGAGCTTTAA+AGG + chr2_3:50949785-50949804 None:intergenic 20.0%
!! AAAAAAATATTGCTAGCAAA+GGG + chr2_3:50949841-50949860 None:intergenic 20.0%
!! TAAAAAAATATTGCTAGCAA+AGG + chr2_3:50949842-50949861 None:intergenic 20.0%
!! CAATCTTAATCATAACATAA+AGG + chr2_3:50950298-50950317 None:intergenic 20.0%
!!! TAATTTTAGTCCTTATTTTG+AGG - chr2_3:50950702-50950721 Msa0297270:intron 20.0%
!!! AATTTTAGTCCTTATTTTGA+GGG - chr2_3:50950703-50950722 Msa0297270:intron 20.0%
!!! AATTTTAATCCCTCAAAATA+AGG + chr2_3:50950715-50950734 None:intergenic 20.0%
!! TGACTAAATCAAAACAATAA+TGG - chr2_3:50950786-50950805 Msa0297270:intron 20.0%
!!! AATACAACACTTTTTGTTTT+TGG + chr2_3:50950812-50950831 None:intergenic 20.0%
!!! TAATGAAAGTATGTTTATAC+TGG + chr2_3:50951096-50951115 None:intergenic 20.0%
!! TGGTAATAAAAAACAAACAA+AGG + chr2_3:50951136-50951155 None:intergenic 20.0%
!! GGATAATGCATAATATATAT+AGG - chr2_3:50951199-50951218 Msa0297270:intron 20.0%
!!! TGATTTAACGTTTTTTTTTG+TGG + chr2_3:50951250-50951269 None:intergenic 20.0%
!! AACGTTAAATCATTAAATGT+TGG - chr2_3:50951258-50951277 Msa0297270:intron 20.0%
!!! CCTTATAAAATTGATTTAAC+CGG + chr2_3:50952260-50952279 None:intergenic 20.0%
!!! ATATGTTTTATATTCTCTCT+AGG + chr2_3:50952291-50952310 None:intergenic 20.0%
!! AACTTTCTGTCAATTTATAT+CGG - chr2_3:50952400-50952419 Msa0297270:intron 20.0%
!! ATGTACTTGAAAATTACAAA+GGG + chr2_3:50952614-50952633 None:intergenic 20.0%
!! AATGTACTTGAAAATTACAA+AGG + chr2_3:50952615-50952634 None:intergenic 20.0%
!!! TATCTTAATTCATGTGATTT+TGG - chr2_3:50952790-50952809 Msa0297270:intron 20.0%
!!! AATATGTAACATTGATTAGA+GGG - chr2_3:50952992-50953011 Msa0297270:intron 20.0%
!! AATCATTTGAAGAAAACTAT+GGG + chr2_3:50953365-50953384 None:intergenic 20.0%
!! AAATCATTTGAAGAAAACTA+TGG + chr2_3:50953366-50953385 None:intergenic 20.0%
!! ATTATTACATTAAAGAAGAG+AGG - chr2_3:50953430-50953449 Msa0297270:intron 20.0%
!! TAGACAATCTAAATTAATGT+AGG + chr2_3:50953463-50953482 None:intergenic 20.0%
!! GATTGTCTACATTAATTTAA+AGG - chr2_3:50953474-50953493 Msa0297270:intron 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr2_3:50953622-50953641 None:intergenic 20.0%
!!! TATTAATTAAGGGTATGTTT+AGG + chr2_3:50953693-50953712 None:intergenic 20.0%
!! AAGAAATGTGAAAAAAGTAA+AGG - chr2_3:50953828-50953847 Msa0297270:intron 20.0%
!! AGAAATGTGAAAAAAGTAAA+GGG - chr2_3:50953829-50953848 Msa0297270:intron 20.0%
!! TAAAAAAGACATCTAAGTTA+AGG + chr2_3:50953948-50953967 None:intergenic 20.0%
!!! TAACTTAGATGTCTTTTTTA+AGG - chr2_3:50953948-50953967 Msa0297270:intron 20.0%
!!! ACAAGAAATTAATTTTGTTG+TGG - chr2_3:50954046-50954065 Msa0297270:intron 20.0%
!! CATTGTTATAAAATATTGCA+GGG - chr2_3:50954240-50954259 Msa0297270:intron 20.0%
!!! TGTTTTTTCTTGATAAAGAA+AGG + chr2_3:50954729-50954748 None:intergenic 20.0%
!!! TATCAATTGTTTTGGAATTT+TGG + chr2_3:50955201-50955220 None:intergenic 20.0%
!! AACGAGTTAATATATATCAA+AGG - chr2_3:50955232-50955251 Msa0297270:five_prime_UTR 20.0%
! TTTCATTGCAACAAGTTATA+AGG + chr2_3:50949401-50949420 None:intergenic 25.0%
!!! TATAGGATTTTTGGTAGAAA+AGG - chr2_3:50949753-50949772 Msa0297270:intron 25.0%
!! AGCTCTTTTAGTATATATAG+AGG - chr2_3:50949789-50949808 Msa0297270:intron 25.0%
! TATGATTAAGATTGTGATAG+TGG - chr2_3:50950304-50950323 Msa0297270:CDS 25.0%
! ATGTAATATCATCAAAGTAG+AGG + chr2_3:50950498-50950517 None:intergenic 25.0%
! CTAAAAGTTGTATGTTTACA+AGG + chr2_3:50950670-50950689 None:intergenic 25.0%
! ATGAAACAATATTGAACTCT+TGG - chr2_3:50951002-50951021 Msa0297270:intron 25.0%
! AGGACTAATAATTTACTGTT+TGG + chr2_3:50951156-50951175 None:intergenic 25.0%
! AACTCAAAAGAATGGTTTAA+GGG + chr2_3:50951358-50951377 None:intergenic 25.0%
! ATCCTTGATAAGATATATTC+AGG - chr2_3:50951490-50951509 Msa0297270:intron 25.0%
!! TCTGTCTCAGATATATTTTT+GGG + chr2_3:50951559-50951578 None:intergenic 25.0%
!! TTCTGTCTCAGATATATTTT+TGG + chr2_3:50951560-50951579 None:intergenic 25.0%
! GTGCAATAATAATAAGTTCT+TGG - chr2_3:50951614-50951633 Msa0297270:intron 25.0%
! GGTAAAAATGTCTAAATTGT+TGG - chr2_3:50951665-50951684 Msa0297270:intron 25.0%
!! TTTTTCCTAACAATAACATC+CGG + chr2_3:50951692-50951711 None:intergenic 25.0%
!! CATGTCAATACATAATTTTG+AGG - chr2_3:50951879-50951898 Msa0297270:intron 25.0%
!! AAAATTGCACGTTTTCAAAT+GGG - chr2_3:50952046-50952065 Msa0297270:intron 25.0%
!! CCGGTTAAATCAATTTTATA+AGG - chr2_3:50952257-50952276 Msa0297270:intron 25.0%
! AAACATAGATAATACTACCT+CGG - chr2_3:50952539-50952558 Msa0297270:intron 25.0%
! TGTACTTGAAAATTACAAAG+GGG + chr2_3:50952613-50952632 None:intergenic 25.0%
! AATCACATGAATTAAGATAG+TGG + chr2_3:50952789-50952808 None:intergenic 25.0%
! GTAGCAATTATACTAAAATG+TGG - chr2_3:50952844-50952863 Msa0297270:intron 25.0%
! TTGTATAAAAGTCAATTGCT+TGG - chr2_3:50952944-50952963 Msa0297270:intron 25.0%
!! GAATATGTAACATTGATTAG+AGG - chr2_3:50952991-50953010 Msa0297270:intron 25.0%
! ACAAATCTCTTTAAGTCAAA+AGG + chr2_3:50953230-50953249 None:intergenic 25.0%
!!! TTTTGACTTAAAGAGATTTG+TGG - chr2_3:50953229-50953248 Msa0297270:CDS 25.0%
! AATAAGTAGTAATCCAATGA+GGG + chr2_3:50953289-50953308 None:intergenic 25.0%
! TAATAAGTAGTAATCCAATG+AGG + chr2_3:50953290-50953309 None:intergenic 25.0%
! CATTGGATTACTACTTATTA+TGG - chr2_3:50953290-50953309 Msa0297270:intron 25.0%
!! AGAAAAAAGAAGTACAAACA+TGG + chr2_3:50953319-50953338 None:intergenic 25.0%
!!! AACACTTTTTACACTTTTGA+GGG + chr2_3:50953566-50953585 None:intergenic 25.0%
! CAAAAATAAAATCAAATGGG+TGG + chr2_3:50953619-50953638 None:intergenic 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr2_3:50953623-50953642 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr2_3:50953657-50953676 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr2_3:50953658-50953677 None:intergenic 25.0%
! TATACAAACAAAGGACAATT+TGG - chr2_3:50953755-50953774 Msa0297270:intron 25.0%
! GAAATGTGAAAAAAGTAAAG+GGG - chr2_3:50953830-50953849 Msa0297270:intron 25.0%
! AAATGTGAAAAAAGTAAAGG+GGG - chr2_3:50953831-50953850 Msa0297270:intron 25.0%
!!! AGCAACATTATTTTTTCGAA+TGG - chr2_3:50954115-50954134 Msa0297270:CDS 25.0%
! GCATTGTTATAAAATATTGC+AGG - chr2_3:50954239-50954258 Msa0297270:intron 25.0%
!!! ACACCTTAATGTTTTTATGT+GGG + chr2_3:50954476-50954495 None:intergenic 25.0%
!!! TACACCTTAATGTTTTTATG+TGG + chr2_3:50954477-50954496 None:intergenic 25.0%
! ATACATAAATGAAGTTGTCA+GGG + chr2_3:50954605-50954624 None:intergenic 25.0%
! TATCTGTCATGTACTATAAT+TGG + chr2_3:50954759-50954778 None:intergenic 25.0%
!! AATATTGTGGACTAAATTGA+TGG - chr2_3:50954896-50954915 Msa0297270:CDS 25.0%
!! GATGGATCACATATATTTTA+AGG - chr2_3:50954914-50954933 Msa0297270:CDS 25.0%
! TAATTTAGTGACTAAATTGG+AGG - chr2_3:50954956-50954975 Msa0297270:CDS 25.0%
! AATTTAGTGACTAAATTGGA+GGG - chr2_3:50954957-50954976 Msa0297270:CDS 25.0%
! ATAGACATTAATTCTATTGC+AGG - chr2_3:50955039-50955058 Msa0297270:CDS 25.0%
GAATGGATGAAAAATATGAG+AGG + chr2_3:50949451-50949470 None:intergenic 30.0%
!!! TTTAAGGTTTTTTCGTCGAA+TGG + chr2_3:50949520-50949539 None:intergenic 30.0%
ATCAATTTCAAATATTGGGG+TGG - chr2_3:50949661-50949680 Msa0297270:intron 30.0%
!! TCCTAAGAGTATAGGATTTT+TGG - chr2_3:50949744-50949763 Msa0297270:intron 30.0%
ACCAAAAATCCTATACTCTT+AGG + chr2_3:50949748-50949767 None:intergenic 30.0%
!! ACTAAAAGAGCTTTAAAGGT+TGG + chr2_3:50949781-50949800 None:intergenic 30.0%
!! TTATATCAGCATCGGTATTA+TGG - chr2_3:50949928-50949947 Msa0297270:intron 30.0%
TATGGAAAATCAATACCGTT+TGG - chr2_3:50949946-50949965 Msa0297270:intron 30.0%
! GGTTACATGGTAACATTTTA+TGG + chr2_3:50950230-50950249 None:intergenic 30.0%
TTACCATGTAACCTCAAATA+TGG - chr2_3:50950237-50950256 Msa0297270:intron 30.0%
ATATCATCAAAGTAGAGGAT+TGG + chr2_3:50950493-50950512 None:intergenic 30.0%
ACAACATCGAAATAAGCATT+TGG + chr2_3:50950523-50950542 None:intergenic 30.0%
CTAAGAATTGAAAGACCATT+TGG + chr2_3:50951055-50951074 None:intergenic 30.0%
TGCATAATATATATAGGGTC+TGG - chr2_3:50951205-50951224 Msa0297270:intron 30.0%
ACTCAAAAGAATGGTTTAAG+GGG + chr2_3:50951357-50951376 None:intergenic 30.0%
CAACTCAAAAGAATGGTTTA+AGG + chr2_3:50951359-50951378 None:intergenic 30.0%
ATCAATTCCACTACATATCA+CGG + chr2_3:50951449-50951468 None:intergenic 30.0%
CACCTGAATATATCTTATCA+AGG + chr2_3:50951495-50951514 None:intergenic 30.0%
! TAAGATATATTCAGGTGTTG+TGG - chr2_3:50951498-50951517 Msa0297270:intron 30.0%
!! CTGTCTCAGATATATTTTTG+GGG + chr2_3:50951558-50951577 None:intergenic 30.0%
! AAATATATCTGAGACAGAAG+TGG - chr2_3:50951561-50951580 Msa0297270:intron 30.0%
! AATATATCTGAGACAGAAGT+GGG - chr2_3:50951562-50951581 Msa0297270:intron 30.0%
TCCATAAATTCTAACTAAGC+TGG - chr2_3:50951644-50951663 Msa0297270:intron 30.0%
ACCAGCTTAGTTAGAATTTA+TGG + chr2_3:50951648-50951667 None:intergenic 30.0%
AAATGTCTAAATTGTTGGAC+CGG - chr2_3:50951670-50951689 Msa0297270:intron 30.0%
! ATGTATTGACATGCGTAATA+GGG + chr2_3:50951872-50951891 None:intergenic 30.0%
! TATGTATTGACATGCGTAAT+AGG + chr2_3:50951873-50951892 None:intergenic 30.0%
AAATACAGTCGAAGTAAGTT+AGG - chr2_3:50952021-50952040 Msa0297270:intron 30.0%
! CAAAATTGCACGTTTTCAAA+TGG - chr2_3:50952045-50952064 Msa0297270:intron 30.0%
TTCAAATGGGTCATTTATTG+CGG - chr2_3:50952059-50952078 Msa0297270:intron 30.0%
AATAGTTATGACCATGATGA+GGG - chr2_3:50952148-50952167 Msa0297270:intron 30.0%
TATATCAAGCTATAAGCACT+AGG + chr2_3:50952366-50952385 None:intergenic 30.0%
ACAAAGGGGTCATATAAAAA+GGG + chr2_3:50952599-50952618 None:intergenic 30.0%
TACAAAGGGGTCATATAAAA+AGG + chr2_3:50952600-50952619 None:intergenic 30.0%
!! ATTCATGTGATTTTGGCAAA+AGG - chr2_3:50952797-50952816 Msa0297270:intron 30.0%
!! TTCATGTGATTTTGGCAAAA+GGG - chr2_3:50952798-50952817 Msa0297270:intron 30.0%
AAATTTGACTCATTGTGAGA+TGG - chr2_3:50953060-50953079 Msa0297270:CDS 30.0%
AATTTAGACATGCAGTGAAA+TGG - chr2_3:50953160-50953179 Msa0297270:CDS 30.0%
GAAAGATGCAAGAAAGAATA+TGG - chr2_3:50953251-50953270 Msa0297270:intron 30.0%
TGGATTACTACTTATTATGG+AGG - chr2_3:50953293-50953312 Msa0297270:intron 30.0%
!! CAACACTTTTTACACTTTTG+AGG + chr2_3:50953567-50953586 None:intergenic 30.0%
TGAAAAGGGGTTTAGATTTA+GGG + chr2_3:50953643-50953662 None:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG + chr2_3:50953644-50953663 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr2_3:50953656-50953675 None:intergenic 30.0%
AATGTGAAAAAAGTAAAGGG+GGG - chr2_3:50953832-50953851 Msa0297270:intron 30.0%
!!! TTTGTTGTGGTTTTGACTAA+TGG - chr2_3:50954059-50954078 Msa0297270:CDS 30.0%
AAACGAGTTCTTCAAAAGTT+TGG - chr2_3:50954091-50954110 Msa0297270:CDS 30.0%
ACACCCACATAAAAACATTA+AGG - chr2_3:50954470-50954489 Msa0297270:intron 30.0%
CATACATAAATGAAGTTGTC+AGG + chr2_3:50954606-50954625 None:intergenic 30.0%
TCTCAATAAAAAGAAGAGCT+AGG + chr2_3:50954699-50954718 None:intergenic 30.0%
AGGTAGAATATCCAAACAAT+GGG + chr2_3:50955067-50955086 None:intergenic 30.0%
AAGGTAGAATATCCAAACAA+TGG + chr2_3:50955068-50955087 None:intergenic 30.0%
GATTGAACAACGAAATAAAG+AGG - chr2_3:50955113-50955132 Msa0297270:CDS 30.0%
GTCCAGTATTATATTGATCT+TGG - chr2_3:50955159-50955178 Msa0297270:CDS 30.0%
CACCAAGATCAATATAATAC+TGG + chr2_3:50955164-50955183 None:intergenic 30.0%
! TTCAACATCTTTTGGATCAG+TGG + chr2_3:50949563-50949582 None:intergenic 35.0%
TGCTCCAATATTTGTCTACT+TGG - chr2_3:50949696-50949715 Msa0297270:intron 35.0%
GCTCCAATATTTGTCTACTT+GGG - chr2_3:50949697-50949716 Msa0297270:intron 35.0%
AATCAATACCGTTTGGATCA+AGG - chr2_3:50949953-50949972 Msa0297270:intron 35.0%
ATCAATACCGTTTGGATCAA+GGG - chr2_3:50949954-50949973 Msa0297270:intron 35.0%
TTCAAGAATGCAAACACACT+TGG - chr2_3:50949985-50950004 Msa0297270:intron 35.0%
ATCCTCCAATCACAATTACT+GGG + chr2_3:50950092-50950111 None:intergenic 35.0%
ATTGTGATTGGAGGATCATA+TGG - chr2_3:50950096-50950115 Msa0297270:intron 35.0%
TGTCGCAATATTTGATGTTG+CGG - chr2_3:50950197-50950216 Msa0297270:intron 35.0%
! CAACCATATTTGAGGTTACA+TGG + chr2_3:50950243-50950262 None:intergenic 35.0%
AGCAATCACAACCATATTTG+AGG + chr2_3:50950251-50950270 None:intergenic 35.0%
!!! AACGTTTTTTTTTGTGGTCG+AGG + chr2_3:50951244-50951263 None:intergenic 35.0%
!! ACAACAAAACTCTAGAGTGT+TGG - chr2_3:50951290-50951309 Msa0297270:intron 35.0%
GGAATTGATAAAGCTTCTCT+TGG - chr2_3:50951460-50951479 Msa0297270:intron 35.0%
GCTTTGTAAGGATGTGTTAT+AGG - chr2_3:50951796-50951815 Msa0297270:intron 35.0%
TCAAATGGGTCATTTATTGC+GGG - chr2_3:50952060-50952079 Msa0297270:intron 35.0%
ATGGTCATAACTATTGAGCT+TGG + chr2_3:50952143-50952162 None:intergenic 35.0%
CAATAGTTATGACCATGATG+AGG - chr2_3:50952147-50952166 Msa0297270:intron 35.0%
ATAGTTATGACCATGATGAG+GGG - chr2_3:50952149-50952168 Msa0297270:intron 35.0%
! GAGTTCTGTCTTTTCAATGT+GGG + chr2_3:50952195-50952214 None:intergenic 35.0%
! AGAGTTCTGTCTTTTCAATG+TGG + chr2_3:50952196-50952215 None:intergenic 35.0%
!! ATTGATTTAACCGGCTTGTA+AGG + chr2_3:50952251-50952270 None:intergenic 35.0%
!! AAAGGGTCTTATTATTACCG+AGG + chr2_3:50952559-50952578 None:intergenic 35.0%
! GCAAAAGGGTCTTATGTATA+AGG - chr2_3:50952812-50952831 Msa0297270:intron 35.0%
! AAGGGTCTTATGTATAAGGA+CGG - chr2_3:50952816-50952835 Msa0297270:intron 35.0%
CTCTTTAAGTCAAAAGGAGA+AGG + chr2_3:50953224-50953243 None:intergenic 35.0%
CAAATGGGTGGTTAGATATA+GGG + chr2_3:50953607-50953626 None:intergenic 35.0%
TCAAATGGGTGGTTAGATAT+AGG + chr2_3:50953608-50953627 None:intergenic 35.0%
!! TGTTCTGAGGACAATGATTA+AGG + chr2_3:50953906-50953925 None:intergenic 35.0%
AAAGATCCTTATAGTAGTGC+CGG - chr2_3:50954142-50954161 Msa0297270:CDS 35.0%
TGGACAAAGAAATACACTAG+TGG + chr2_3:50954516-50954535 None:intergenic 35.0%
! CTTGGATCACTTTCTTTTGA+AGG + chr2_3:50955087-50955106 None:intergenic 35.0%
CAAAAGAAAGTGATCCAAGA+TGG - chr2_3:50955088-50955107 Msa0297270:CDS 35.0%
!! ACCACTTCAAGTTGTTCACA+TGG - chr2_3:50949422-50949441 Msa0297270:CDS 40.0%
TAGGAGTGGGATTGATAGAA+TGG + chr2_3:50949468-50949487 None:intergenic 40.0%
GGTATTGTCAATGAGTGTGT+AGG + chr2_3:50949487-50949506 None:intergenic 40.0%
CACACTCATTGACAATACCA+AGG - chr2_3:50949488-50949507 Msa0297270:CDS 40.0%
! CAAGGTTGCAATGTCGTTTA+AGG + chr2_3:50949536-50949555 None:intergenic 40.0%
CTTAAACGACATTGCAACCT+TGG - chr2_3:50949534-50949553 Msa0297270:intron 40.0%
! TTTTGGATCAGTGGAAACCA+AGG + chr2_3:50949554-50949573 None:intergenic 40.0%
GGACCCAAGTAGACAAATAT+TGG + chr2_3:50949703-50949722 None:intergenic 40.0%
GAACCATCTATTGCTTGTTC+TGG + chr2_3:50949724-50949743 None:intergenic 40.0%
! GATGGTTCTCCTAAGAGTAT+AGG - chr2_3:50949736-50949755 Msa0297270:intron 40.0%
! CACAATTACTGGGGAGTTTT+GGG + chr2_3:50950082-50950101 None:intergenic 40.0%
! TCACAATTACTGGGGAGTTT+TGG + chr2_3:50950083-50950102 None:intergenic 40.0%
AACTCCCCAGTAATTGTGAT+TGG - chr2_3:50950084-50950103 Msa0297270:intron 40.0%
TCCTCCAATCACAATTACTG+GGG + chr2_3:50950091-50950110 None:intergenic 40.0%
GATCCTCCAATCACAATTAC+TGG + chr2_3:50950093-50950112 None:intergenic 40.0%
TAGGCTCAAATATCCTCACT+TGG - chr2_3:50950441-50950460 Msa0297270:intron 40.0%
AAATATCCTCACTTGGCCAT+TGG - chr2_3:50950448-50950467 Msa0297270:CDS 40.0%
TGAGCTTAACTCGGTTGTTA+AGG - chr2_3:50951178-50951197 Msa0297270:intron 40.0%
CCTCTGACAACTCAAAAGAA+TGG + chr2_3:50951366-50951385 None:intergenic 40.0%
!!! CCATTCTTTTGAGTTGTCAG+AGG - chr2_3:50951363-50951382 Msa0297270:CDS 40.0%
!!! TTTTGAGTTGTCAGAGGACT+TGG - chr2_3:50951369-50951388 Msa0297270:CDS 40.0%
TTGGACCGGATGTTATTGTT+AGG - chr2_3:50951684-50951703 Msa0297270:intron 40.0%
ACACTTCTCACCTTACAATC+CGG - chr2_3:50951765-50951784 Msa0297270:intron 40.0%
ACCTTACAATCCGGTTAAGA+TGG - chr2_3:50951774-50951793 Msa0297270:intron 40.0%
CCTTACAAAGCCATCTTAAC+CGG + chr2_3:50951787-50951806 None:intergenic 40.0%
!! GAGGGAGTATGTTTTTACGT+TGG + chr2_3:50951823-50951842 None:intergenic 40.0%
TCAACCGTGTCATGTATTGT+GGG + chr2_3:50951849-50951868 None:intergenic 40.0%
! GGTATCAAGTCTTATCGATC+AGG - chr2_3:50952098-50952117 Msa0297270:intron 40.0%
CACTCATTGTAGCAAAGAGA+GGG + chr2_3:50952477-50952496 None:intergenic 40.0%
TCACTCATTGTAGCAAAGAG+AGG + chr2_3:50952478-50952497 None:intergenic 40.0%
! AGTGAAATGGTGATGCCTTT+CGG - chr2_3:50953173-50953192 Msa0297270:CDS 40.0%
GTATCATTTCCTATGCCGAA+AGG + chr2_3:50953191-50953210 None:intergenic 40.0%
TGCTCTTAGAGTAGTGGTTA+AGG - chr2_3:50953510-50953529 Msa0297270:intron 40.0%
AGTAAAGGGGGGTTACATTA+AGG - chr2_3:50953843-50953862 Msa0297270:intron 40.0%
GTAAAGGGGGGTTACATTAA+GGG - chr2_3:50953844-50953863 Msa0297270:intron 40.0%
TTAATCAGTGTCGTGTTCTG+AGG + chr2_3:50953919-50953938 None:intergenic 40.0%
!!! TTGTGGTTTTGACTAATGGC+AGG - chr2_3:50954063-50954082 Msa0297270:CDS 40.0%
AAGATCCTTATAGTAGTGCC+GGG - chr2_3:50954143-50954162 Msa0297270:CDS 40.0%
! TGAATTTTACGGTGCTTACC+CGG + chr2_3:50954164-50954183 None:intergenic 40.0%
TCGCAACAAGACTCTTTGAT+AGG + chr2_3:50954276-50954295 None:intergenic 40.0%
AAGACATACCATTGATCGCA+TGG + chr2_3:50954300-50954319 None:intergenic 40.0%
AGCTAGGAAAAATAGAGCGA+GGG + chr2_3:50954683-50954702 None:intergenic 40.0%
TATTGCAGGATCCCATTGTT+TGG - chr2_3:50955053-50955072 Msa0297270:CDS 40.0%
CGTTGTTCAATCAACCATCT+TGG + chr2_3:50955105-50955124 None:intergenic 40.0%
AGGTCGAGATTATTCAAGAG+TGG - chr2_3:50955133-50955152 Msa0297270:CDS 40.0%
!! TTTGGAATTTTGGTACGCCA+TGG + chr2_3:50955191-50955210 None:intergenic 40.0%
GCCATGTGAACAACTTGAAG+TGG + chr2_3:50949426-50949445 None:intergenic 45.0%
GTCAATGAGTGTGTAGGAGT+GGG + chr2_3:50949481-50949500 None:intergenic 45.0%
TGTCAATGAGTGTGTAGGAG+TGG + chr2_3:50949482-50949501 None:intergenic 45.0%
TCGTCGAATGGAGATAACCT+TGG + chr2_3:50949508-50949527 None:intergenic 45.0%
GGTCCAGAACAAGCAATAGA+TGG - chr2_3:50949718-50949737 Msa0297270:intron 45.0%
GCTTCTTCCCTTGATCCAAA+CGG + chr2_3:50949964-50949983 None:intergenic 45.0%
TCCCCAGTAATTGTGATTGG+AGG - chr2_3:50950087-50950106 Msa0297270:intron 45.0%
GTGATTGGAGGATCATATGG+TGG - chr2_3:50950099-50950118 Msa0297270:intron 45.0%
! TATACACAGTGCTTGCTGCA+TGG - chr2_3:50950416-50950435 Msa0297270:intron 45.0%
TAGTCCTCGTGAGCTTAACT+CGG - chr2_3:50951169-50951188 Msa0297270:intron 45.0%
ATCACGGTAACTGGATAGTC+TGG + chr2_3:50951433-50951452 None:intergenic 45.0%
CCACTACATATCACGGTAAC+TGG + chr2_3:50951442-50951461 None:intergenic 45.0%
CCAGTTACCGTGATATGTAG+TGG - chr2_3:50951439-50951458 Msa0297270:intron 45.0%
! TTCAGGTGTTGTGGCTTACA+AGG - chr2_3:50951507-50951526 Msa0297270:intron 45.0%
! TCAGGTGTTGTGGCTTACAA+GGG - chr2_3:50951508-50951527 Msa0297270:intron 45.0%
GTTGTGGCTTACAAGGGAAA+TGG - chr2_3:50951514-50951533 Msa0297270:intron 45.0%
! TATCTGAGACAGAAGTGGGT+TGG - chr2_3:50951566-50951585 Msa0297270:intron 45.0%
GCCATCTTAACCGGATTGTA+AGG + chr2_3:50951778-50951797 None:intergenic 45.0%
!! CCGGTTAAGATGGCTTTGTA+AGG - chr2_3:50951784-50951803 Msa0297270:intron 45.0%
GTCAACCGTGTCATGTATTG+TGG + chr2_3:50951850-50951869 None:intergenic 45.0%
ATGGGTCATTTATTGCGGGA+CGG - chr2_3:50952064-50952083 Msa0297270:intron 45.0%
!! AGCTTGGTGCGTGAATATGT+AGG + chr2_3:50952127-50952146 None:intergenic 45.0%
TTCCAATACACCCCTCATCA+TGG + chr2_3:50952162-50952181 None:intergenic 45.0%
!! TTTAACCGGCTTGTAAGGTG+AGG + chr2_3:50952246-50952265 None:intergenic 45.0%
! GGTCTTATGTATAAGGACGG+AGG - chr2_3:50952819-50952838 Msa0297270:intron 45.0%
AACCAGTGCTCTTAGAGTAG+TGG - chr2_3:50953504-50953523 Msa0297270:intron 45.0%
! AACCACTACTCTAAGAGCAC+TGG + chr2_3:50953509-50953528 None:intergenic 45.0%
TGGTTAGATATAGGGACGGA+GGG + chr2_3:50953599-50953618 None:intergenic 45.0%
TGGGTGGTTAGATATAGGGA+CGG + chr2_3:50953603-50953622 None:intergenic 45.0%
GAGCTAGGAAAAATAGAGCG+AGG + chr2_3:50954684-50954703 None:intergenic 45.0%
! ATTGATCTTGGTGCACTCCA+TGG - chr2_3:50955171-50955190 Msa0297270:CDS 45.0%
!! TAAAAAATTATATATTTGTA+AGG - chr2_3:50950881-50950900 Msa0297270:intron 5.0%
!!! TTATTTTATTTAGAATAATT+TGG - chr2_3:50950925-50950944 Msa0297270:intron 5.0%
!! AAAAAAATGTATAATAAATA+GGG + chr2_3:50952660-50952679 None:intergenic 5.0%
!! TATATATATATATATATAAG+AGG - chr2_3:50954437-50954456 Msa0297270:intron 5.0%
! CAGTGCTTGCTGCATGGTTT+AGG - chr2_3:50950422-50950441 Msa0297270:intron 50.0%
! AAAGCACCAATGGCCAAGTG+AGG + chr2_3:50950457-50950476 None:intergenic 50.0%
! TCACTTGGCCATTGGTGCTT+TGG - chr2_3:50950456-50950475 Msa0297270:CDS 50.0%
AAAGTAGCGTCGCAGCCAAA+TGG - chr2_3:50951037-50951056 Msa0297270:intron 50.0%
ACAACCGAGTTAAGCTCACG+AGG + chr2_3:50951176-50951195 None:intergenic 50.0%
ACGGTAACTGGATAGTCTGG+AGG + chr2_3:50951430-50951449 None:intergenic 50.0%
!! AGACAGAAGTGGGTTGGAGA+TGG - chr2_3:50951572-50951591 Msa0297270:intron 50.0%
GTCATGTATTGTGGGACGGA+GGG + chr2_3:50951841-50951860 None:intergenic 50.0%
TGTCATGTATTGTGGGACGG+AGG + chr2_3:50951842-50951861 None:intergenic 50.0%
CCGTGTCATGTATTGTGGGA+CGG + chr2_3:50951845-50951864 None:intergenic 50.0%
CCGTCCCACAATACATGACA+CGG - chr2_3:50951842-50951861 Msa0297270:intron 50.0%
GTCATTTATTGCGGGACGGA+GGG - chr2_3:50952068-50952087 Msa0297270:intron 50.0%
! GACCATGATGAGGGGTGTAT+TGG - chr2_3:50952157-50952176 Msa0297270:intron 50.0%
ACGTTCCTCACCTTACAAGC+CGG - chr2_3:50952238-50952257 Msa0297270:intron 50.0%
! ATGGTGATGCCTTTCGGCAT+AGG - chr2_3:50953179-50953198 Msa0297270:CDS 50.0%
GTAGTAATCCAATGAGGGCG+AGG + chr2_3:50953284-50953303 None:intergenic 50.0%
GTGGTTAGATATAGGGACGG+AGG + chr2_3:50953600-50953619 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr2_3:50953848-50953867 Msa0297270:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr2_3:50953852-50953871 Msa0297270:intron 50.0%
GCTTACCCGGCACTACTATA+AGG + chr2_3:50954151-50954170 None:intergenic 50.0%
GTTGCGATCCATGCGATCAA+TGG - chr2_3:50954289-50954308 Msa0297270:intron 50.0%
! AGACGAGGCCAAAGCACCAA+TGG + chr2_3:50950467-50950486 None:intergenic 55.0%
GTAGAGGATTGGAGCAGACG+AGG + chr2_3:50950482-50950501 None:intergenic 55.0%
!! AGAAGTGGGTTGGAGATGGC+AGG - chr2_3:50951576-50951595 Msa0297270:intron 55.0%
GGTCATTTATTGCGGGACGG+AGG - chr2_3:50952067-50952086 Msa0297270:intron 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr2_3:50953851-50953870 Msa0297270:intron 55.0%
GCGCGCACGCGTTTGTGTTT+GGG + chr2_3:50950160-50950179 None:intergenic 60.0%
TGCGCGCACGCGTTTGTGTT+TGG + chr2_3:50950161-50950180 None:intergenic 60.0%
! TGCGGGACGGAGGGAGTATA+TGG - chr2_3:50952077-50952096 Msa0297270:intron 60.0%
GTGTCTCACCTCGCCCTCAT+TGG - chr2_3:50953273-50953292 Msa0297270:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50949355 50955255 50949355 ID=Msa0297270;Name=Msa0297270
chr2_3 mRNA 50949355 50955255 50949355 ID=Msa0297270-mRNA-1;Parent=Msa0297270;Name=Msa0297270-mRNA-1;_AED=0.27;_eAED=0.27;_QI=60|1|1|1|1|1|9|37|504
chr2_3 exon 50949355 50949549 50949355 ID=Msa0297270-mRNA-1:exon:16084;Parent=Msa0297270-mRNA-1
chr2_3 exon 50950300 50950349 50950300 ID=Msa0297270-mRNA-1:exon:16083;Parent=Msa0297270-mRNA-1
chr2_3 exon 50950446 50950525 50950446 ID=Msa0297270-mRNA-1:exon:16082;Parent=Msa0297270-mRNA-1
chr2_3 exon 50951291 50951443 50951291 ID=Msa0297270-mRNA-1:exon:16081;Parent=Msa0297270-mRNA-1
chr2_3 exon 50953013 50953256 50953013 ID=Msa0297270-mRNA-1:exon:16080;Parent=Msa0297270-mRNA-1
chr2_3 exon 50953515 50953627 50953515 ID=Msa0297270-mRNA-1:exon:16079;Parent=Msa0297270-mRNA-1
chr2_3 exon 50954052 50954185 50954052 ID=Msa0297270-mRNA-1:exon:16078;Parent=Msa0297270-mRNA-1
chr2_3 exon 50954487 50954673 50954487 ID=Msa0297270-mRNA-1:exon:16077;Parent=Msa0297270-mRNA-1
chr2_3 exon 50954800 50955255 50954800 ID=Msa0297270-mRNA-1:exon:16076;Parent=Msa0297270-mRNA-1
chr2_3 five_prime_UTR 50955196 50955255 50955196 ID=Msa0297270-mRNA-1:five_prime_utr;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50954800 50955195 50954800 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50954487 50954673 50954487 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50954052 50954185 50954052 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50953515 50953627 50953515 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50953013 50953256 50953013 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50951291 50951443 50951291 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50950446 50950525 50950446 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50950300 50950349 50950300 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 CDS 50949392 50949549 50949392 ID=Msa0297270-mRNA-1:cds;Parent=Msa0297270-mRNA-1
chr2_3 three_prime_UTR 50949355 50949391 50949355 ID=Msa0297270-mRNA-1:three_prime_utr;Parent=Msa0297270-mRNA-1
Gene Sequence

>Msa0297270

ATGAAACACCACTTCAAGTTGTTCACATGGCTTCCTCTCATATTTTTCATCCATTCTATCAATCCCACTCCTACACACTCATTGACAATACCAAGGTTATCTCCATTCGACGAAAAAACCTTAAACGACATTGCAACCTTGGTTTCCACTGATCCAAAAGATGTTGAAACATTTTACTACAAACAAGTTCTTGATCACTTCAACTATAATCCACAAAGCTATAATACATTTAATCAAAGATATTTGATCAATTTCAAATATTGGGGTGGTGCAAATTCTAGTGCTCCAATATTTGTCTACTTGGGTCCAGAACAAGCAATAGATGGTTCTCCTAAGAGTATAGGATTTTTGGTAGAAAAGGCACCAACCTTTAAAGCTCTTTTAGTATATATAGAGCATCGGTATTATGGAAAATCAATACCGTTTGGATCAAGGGAAGAAGCGTTCAAGAATGCAAACACACTTGGATATTTTAACTCAGCTCAAGCACTTGCAGATTATGCAGAAGTGATCATAGACATAAAGAAGACATTGCATGCCCAAAACTCCCCAGTAATTGTGATTGGAGGATCATATGGTGGAATGCTTGCTGCATGGTTTAGGCTCAAATATCCTCACTTGGCCATTGGTGCTTTGGCCTCGTCTGCTCCAATCCTCTACTTTGATGATATTACATCACCAAATGCTTATTTCGATGTTGTTTCAAGAGATTTCAAAGAAGTCAGTGAGACATGTTATGAAACAATATTGAACTCTTGGTCTGAAATTGACAAAGTAGCGTCGCAGCCAAATGGTCTTTCAATTCTTAGTCAAAGATTCAACACTTGCCACCCCTTAAACCATTCTTTTGAGTTGTCAGAGGACTTGGAAAGCATGTATACAAGTGCAGCTCAATATAATCATCCTCCAGACTATCCAGTTACCGTGATATGTAGTGGAATTGATAAAGCTTCTCTTGGAAATAATATCCTTGATAAGATATATTCAGGTGTTGTGGCTTACAAGGGAAATGGCACATGCAAAGTTAATAACCCCAAAAATATATCTGAGACAGAAGTGGGTTGGAGATGGCAGACATGCAGTGAAATGGTGATGCCTTTCGGCATAGGAAATGATACTATGTTTCAACCTTCTCCTTTTGACTTAAAGAGATTTGTGGAAAGATGCAAGAAAGAATATGGTGTCTCACCTCGCCCTCATTGGATTACTACTTATTATGGAGGCCATGATATAAAACGAGTTCTTCAAAAGTTTGGTAGCAACATTATTTTTTCGAATGGACTAAAAGATCCTTATAGTAGTGCCGGGGTTTTGCACAACCTATCAAAGAGTCTTGTTGCGATCCATGCGATCAATGGATCCCATTGTTTGGATATTCTACCTTCAAAAGAAAGTGATCCAAGATGGTTGATTGAACAACGAAATAAAGAGGTCGAGATTATTCAAGAGTGGATTGTCCAGTATTATATTGATCTTGGTGCACTCCATGGCGTACCAAAATTCCAAAACAATTGA

Protein sequence

>Msa0297270

MKHHFKLFTWLPLIFFIHSINPTPTHSLTIPRLSPFDEKTLNDIATLVSTDPKDVETFYYKQVLDHFNYNPQSYNTFNQRYLINFKYWGGANSSAPIFVYLGPEQAIDGSPKSIGFLVEKAPTFKALLVYIEHRYYGKSIPFGSREEAFKNANTLGYFNSAQALADYAEVIIDIKKTLHAQNSPVIVIGGSYGGMLAAWFRLKYPHLAIGALASSAPILYFDDITSPNAYFDVVSRDFKEVSETCYETILNSWSEIDKVASQPNGLSILSQRFNTCHPLNHSFELSEDLESMYTSAAQYNHPPDYPVTVICSGIDKASLGNNILDKIYSGVVAYKGNGTCKVNNPKNISETEVGWRWQTCSEMVMPFGIGNDTMFQPSPFDLKRFVERCKKEYGVSPRPHWITTYYGGHDIKRVLQKFGSNIIFSNGLKDPYSSAGVLHNLSKSLVAIHAINGSHCLDILPSKESDPRWLIEQRNKEVEIIQEWIVQYYIDLGALHGVPKFQNN*