AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450780 MtrunA17_Chr1g0156891 87.714 350 10 1 1 317 1 350 0.0 608
Msa1450780 MtrunA17_Chr1g0156901 64.985 337 84 2 14 317 21 356 2.02e-159 449
Msa1450780 MtrunA17_Chr3g0142921 63.473 334 86 2 19 316 9 342 5.04e-152 430
Msa1450780 MtrunA17_Chr1g0156911 61.516 343 96 3 8 317 4 343 1.87e-151 429
Msa1450780 MtrunA17_Chr1g0156931 59.644 337 101 3 14 317 12 346 2.87e-144 410
Msa1450780 MtrunA17_Chr1g0156921 60.355 338 99 3 14 317 13 349 4.08e-142 405
Msa1450780 MtrunA17_Chr3g0142941 59.133 323 98 2 28 317 32 353 4.41e-141 403
Msa1450780 MtrunA17_Chr5g0405821 48.657 335 137 3 17 316 17 351 1.11e-107 318
Msa1450780 MtrunA17_Chr8g0371491 49.051 316 126 3 35 316 28 342 5.17e-103 306
Msa1450780 MtrunA17_Chr5g0405831 44.186 344 151 5 8 316 13 350 2.46e-97 291
Msa1450780 MtrunA17_Chr8g0371471 45.597 318 136 4 36 317 32 348 3.74e-93 281
Msa1450780 MtrunA17_Chr8g0371481 43.529 340 154 5 15 317 11 349 3.20e-92 278
Msa1450780 MtrunA17_Chr5g0438621 36.202 337 172 4 13 315 8 335 3.69e-72 226
Msa1450780 MtrunA17_Chr1g0157001 39.039 333 166 5 19 317 12 341 1.51e-70 223
Msa1450780 MtrunA17_Chr2g0283191 36.103 349 178 7 11 316 7 353 3.62e-70 222
Msa1450780 MtrunA17_Chr4g0046151 37.975 316 154 4 43 317 36 350 9.92e-70 221
Msa1450780 MtrunA17_Chr5g0432101 36.012 336 175 5 21 317 8 342 1.42e-67 215
Msa1450780 MtrunA17_Chr5g0438631 38.065 310 156 5 41 315 26 334 1.92e-67 214
Msa1450780 MtrunA17_Chr3g0120861 37.821 312 159 5 38 315 33 343 1.70e-66 212
Msa1450780 MtrunA17_Chr3g0105401 36.176 340 174 5 9 313 1 332 2.10e-66 212
Msa1450780 MtrunA17_Chr5g0438641 37.821 312 159 5 38 315 27 337 2.31e-64 207
Msa1450780 MtrunA17_Chr8g0341001 34.311 341 183 7 10 315 4 338 8.36e-63 202
Msa1450780 MtrunA17_Chr6g0463261 78.632 117 25 0 96 212 3 119 1.02e-61 192
Msa1450780 MtrunA17_Chr2g0320671 35.905 337 173 9 16 317 9 337 3.21e-59 193
Msa1450780 MtrunA17_Chr5g0437421 34.603 315 166 4 41 316 30 343 3.05e-58 191
Msa1450780 MtrunA17_Chr2g0330781 34.839 310 166 5 41 315 29 337 6.44e-58 190
Msa1450780 MtrunA17_Chr7g0275011 34.006 347 184 7 6 315 1 339 4.59e-52 175
Msa1450780 MtrunA17_Chr4g0027521 31.778 343 188 6 12 317 4 337 1.31e-51 174
Msa1450780 MtrunA17_Chr8g0380041 33.033 333 178 9 19 314 10 334 8.01e-50 169
Msa1450780 MtrunA17_Chr2g0285061 32.479 351 184 13 2 314 1 336 7.01e-49 167
Msa1450780 MtrunA17_Chr7g0275021 32.759 348 183 8 7 317 8 341 1.46e-47 163
Msa1450780 MtrunA17_Chr1g0182811 33.851 322 176 6 32 317 22 342 2.17e-47 163
Msa1450780 MtrunA17_Chr1g0189901 33.548 310 169 6 43 317 31 338 4.57e-47 162
Msa1450780 MtrunA17_Chr3g0086641 32.845 341 186 11 10 313 6 340 1.09e-46 161
Msa1450780 MtrunA17_Chr7g0274991 33.962 318 169 7 37 317 27 340 6.43e-46 159
Msa1450780 MtrunA17_Chr3g0077571 33.033 333 176 9 16 315 12 330 3.11e-45 157
Msa1450780 MtrunA17_Chr6g0457921 32.558 344 189 8 10 317 1 337 1.04e-44 156
Msa1450780 MtrunA17_Chr4g0017431 31.737 334 189 7 18 315 6 336 1.31e-44 155
Msa1450780 MtrunA17_Chr7g0275001 35.048 311 164 6 43 317 25 333 4.87e-44 154
Msa1450780 MtrunA17_Chr3g0131321 32.907 313 170 7 43 317 34 344 7.43e-44 154
Msa1450780 MtrunA17_Chr4g0008851 33.228 316 172 7 39 317 28 341 3.70e-43 152
Msa1450780 MtrunA17_Chr8g0374101 32.209 326 175 10 33 315 27 349 5.94e-43 151
Msa1450780 MtrunA17_Chr3g0077581 31.594 345 184 11 15 313 4 342 1.64e-42 150
Msa1450780 MtrunA17_Chr1g0189931 32.581 310 172 5 43 317 32 339 2.50e-42 150
Msa1450780 MtrunA17_Chr1g0189891 34.084 311 161 7 43 317 29 331 5.73e-42 149
Msa1450780 MtrunA17_Chr5g0396511 32.353 306 170 7 45 315 48 351 2.09e-41 147
Msa1450780 MtrunA17_Chr7g0215961 30.904 343 186 8 10 317 1 327 2.41e-41 147
Msa1450780 MtrunA17_Chr5g0434621 30.820 305 172 6 46 315 28 328 8.39e-41 145
Msa1450780 MtrunA17_Chr5g0444401 32.588 313 174 5 41 317 26 337 3.18e-39 141
Msa1450780 MtrunA17_Chr3g0099151 33.123 317 168 8 41 317 85 397 9.78e-39 141
Msa1450780 MtrunA17_Chr3g0099161 31.672 341 184 6 13 317 74 401 6.92e-38 139
Msa1450780 MtrunA17_Chr2g0284941 34.277 318 178 13 16 316 8 311 1.34e-35 131
Msa1450780 MtrunA17_Chr2g0301641 29.565 345 192 7 16 317 16 352 1.74e-35 132
Msa1450780 MtrunA17_Chr2g0294311 30.904 343 178 13 21 315 15 346 2.93e-35 131
Msa1450780 MtrunA17_Chr2g0294301 29.712 313 178 8 41 315 33 341 7.22e-35 130
Msa1450780 MtrunA17_Chr3g0092131 29.180 305 181 7 45 315 25 328 1.43e-34 129
Msa1450780 MtrunA17_Chr3g0099231 30.794 315 176 6 41 317 26 336 3.83e-34 128
Msa1450780 MtrunA17_Chr2g0285001 32.440 336 178 11 16 314 8 331 5.72e-34 127
Msa1450780 MtrunA17_Chr4g0068441 30.255 314 177 9 40 315 32 341 8.18e-34 127
Msa1450780 MtrunA17_Chr4g0060811 28.896 308 178 8 45 315 29 332 1.60e-33 126
Msa1450780 MtrunA17_Chr7g0229591 39.665 179 106 2 41 218 28 205 1.92e-33 122
Msa1450780 MtrunA17_Chr3g0085881 31.715 309 165 12 40 315 30 325 5.52e-33 124
Msa1450780 MtrunA17_Chr2g0284991 29.912 341 189 11 13 314 1 330 1.61e-32 124
Msa1450780 MtrunA17_Chr2g0284951 32.154 311 159 12 41 314 31 326 3.14e-31 120
Msa1450780 MtrunA17_Chr8g0380031 29.762 336 181 10 19 317 63 380 8.76e-31 119
Msa1450780 MtrunA17_Chr5g0420811 31.922 307 165 13 40 313 30 325 1.16e-30 118
Msa1450780 MtrunA17_Chr2g0284921 29.936 314 172 11 39 315 30 332 3.97e-30 117
Msa1450780 MtrunA17_Chr8g0349341 31.176 340 183 12 13 314 11 337 6.99e-30 116
Msa1450780 MtrunA17_Chr8g0344941 28.116 345 201 10 13 317 12 349 1.31e-27 110
Msa1450780 MtrunA17_Chr8g0349321 29.683 347 188 13 11 314 4 337 1.28e-26 107
Msa1450780 MtrunA17_Chr8g0349331 29.316 307 200 9 16 315 10 306 4.33e-26 105
Msa1450780 MtrunA17_Chr8g0344931 28.529 333 189 10 20 315 14 334 5.13e-26 105
Msa1450780 MtrunA17_Chr6g0469511 46.018 113 60 1 41 153 28 139 3.95e-25 98.2
Msa1450780 MtrunA17_Chr3g0104821 27.928 333 170 13 43 317 44 364 6.43e-25 103
Msa1450780 MtrunA17_Chr4g0027571 30.732 205 108 5 147 317 3 207 1.68e-23 96.3
Msa1450780 MtrunA17_Chr4g0027561 50.000 96 47 1 41 136 28 122 3.03e-23 93.6
Msa1450780 MtrunA17_Chr3g0112821 28.349 321 176 14 43 317 30 342 3.83e-23 98.2
Msa1450780 MtrunA17_Chr1g0160031 27.273 352 187 13 21 315 18 357 1.46e-22 96.7
Msa1450780 MtrunA17_Chr1g0160011 26.271 354 193 12 21 317 18 360 1.80e-22 96.7
Msa1450780 MtrunA17_Chr8g0349301 29.097 299 173 11 13 282 11 299 2.04e-22 95.5
Msa1450780 MtrunA17_Chr3g0093031 28.923 325 174 14 43 317 30 347 2.35e-22 95.9
Msa1450780 MtrunA17_Chr7g0229581 38.532 109 66 1 210 317 32 140 1.49e-20 86.7
Msa1450780 MtrunA17_Chr2g0317271 28.205 351 190 14 13 317 1 335 2.02e-20 90.5
Msa1450780 MtrunA17_Chr2g0283481 28.012 332 176 13 40 317 44 366 6.63e-20 89.4
Msa1450780 MtrunA17_Chr3g0085231 27.653 311 174 10 41 315 29 324 1.04e-19 88.2
Msa1450780 MtrunA17_Chr8g0370951 24.855 346 194 9 20 313 8 339 1.43e-19 88.2
Msa1450780 MtrunA17_Chr8g0370981 34.637 179 99 6 15 185 23 191 5.70e-19 86.7
Msa1450780 MtrunA17_Chr2g0321991 43.089 123 63 5 16 135 8 126 2.09e-18 79.7
Msa1450780 MtrunA17_Chr8g0347751 25.893 336 177 13 43 317 36 360 8.26e-18 83.2
Msa1450780 MtrunA17_Chr1g0159991 24.661 369 206 13 10 317 1 358 9.87e-18 82.8
Msa1450780 MtrunA17_Chr1g0189921 52.273 88 40 2 43 130 31 116 1.21e-17 78.6
Msa1450780 MtrunA17_Chr2g0283511 27.429 350 195 16 20 317 10 352 8.93e-17 80.1
Msa1450780 MtrunA17_Chr4g0018571 34.862 109 70 1 210 317 55 163 9.20e-17 77.0
Msa1450780 MtrunA17_Chr6g0450731 24.571 350 203 12 10 313 1 335 9.65e-17 79.7
Msa1450780 MtrunA17_Chr1g0178931 25.080 311 178 12 44 316 38 331 9.93e-17 79.7
Msa1450780 MtrunA17_Chr6g0455661 51.613 93 40 4 41 133 29 116 1.01e-14 74.3
Msa1450780 MtrunA17_Chr7g0266061 23.676 321 177 14 41 316 40 337 2.49e-13 69.7
Msa1450780 MtrunA17_Chr8g0370971 37.037 108 63 2 40 143 35 141 6.42e-13 65.9
Msa1450780 MtrunA17_Chr3g0104801 36.170 141 76 6 43 176 44 177 7.92e-13 65.9
Msa1450780 MtrunA17_Chr5g0432081 52.083 48 23 0 270 317 10 57 8.43e-13 63.2
Msa1450780 MtrunA17_Chr4g0018561 55.556 54 23 1 41 94 28 80 8.76e-13 63.5
Msa1450780 MtrunA17_Chr1g0198351 25.140 358 195 16 5 316 6 336 1.13e-11 64.7
Msa1450780 MtrunA17_Chr2g0308201 61.818 55 19 2 41 95 33 85 1.85e-11 59.7
Msa1450780 MtrunA17_Chr3g0104831 31.132 106 65 3 220 317 178 283 2.27e-11 63.5
Msa1450780 MtrunA17_Chr7g0228261 42.857 56 32 0 260 315 10 65 4.99e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450780 AT1G75890.2 49.565 345 140 2 7 317 11 355 2.32e-117 343
Msa1450780 AT1G75890.3 49.565 345 140 2 7 317 40 384 2.37e-117 344
Msa1450780 AT1G75890.1 47.765 358 140 3 7 317 11 368 7.21e-114 334
Msa1450780 AT1G75880.2 47.633 338 141 4 15 317 23 359 5.47e-107 317
Msa1450780 AT1G75900.1 48.494 332 135 4 20 317 20 349 1.26e-105 313
Msa1450780 AT1G75880.1 47.493 339 141 5 15 317 23 360 3.69e-105 312
Msa1450780 AT5G42170.1 46.708 319 138 4 30 317 37 354 2.62e-101 302
Msa1450780 AT3G14820.1 44.745 333 145 5 19 317 8 335 5.48e-92 278
Msa1450780 AT1G20120.1 43.949 314 141 3 38 317 73 385 7.99e-87 266
Msa1450780 AT3G43570.1 42.810 306 161 6 19 317 7 305 5.55e-85 259
Msa1450780 AT1G59406.1 44.127 315 136 6 38 317 25 334 1.33e-84 259
Msa1450780 AT1G59030.1 44.127 315 136 6 38 317 25 334 1.33e-84 259
Msa1450780 AT1G58725.1 44.127 315 136 6 38 317 25 334 1.33e-84 259
Msa1450780 AT1G20132.1 43.631 314 142 5 38 317 56 368 1.84e-81 252
Msa1450780 AT1G58520.3 42.857 315 133 7 38 317 25 327 8.69e-77 238
Msa1450780 AT1G58525.1 42.857 315 133 7 38 317 25 327 8.69e-77 238
Msa1450780 AT2G30220.1 38.922 334 166 3 19 317 12 342 5.10e-76 237
Msa1450780 AT2G31540.1 38.529 340 172 3 12 316 6 343 2.17e-74 233
Msa1450780 AT1G58430.1 38.529 340 172 4 12 316 6 343 6.39e-74 232
Msa1450780 AT2G30310.1 37.538 333 171 3 19 316 12 342 2.70e-73 230
Msa1450780 AT1G06990.1 35.942 345 177 5 15 316 1 344 1.90e-71 225
Msa1450780 AT1G20130.2 39.875 321 151 5 38 317 179 498 3.94e-71 229
Msa1450780 AT1G20130.1 39.875 321 151 5 38 317 199 518 8.69e-71 229
Msa1450780 AT1G73610.1 37.353 340 170 7 10 317 1 329 1.19e-69 220
Msa1450780 AT2G04570.1 39.482 309 152 5 41 315 26 333 9.24e-69 218
Msa1450780 AT2G24560.1 36.012 336 178 4 16 316 9 342 1.38e-67 216
Msa1450780 AT2G40250.1 36.792 318 162 5 37 316 30 346 3.54e-67 214
Msa1450780 AT3G43550.1 42.657 286 124 6 19 270 7 286 3.47e-66 209
Msa1450780 AT5G45960.1 38.095 315 156 4 40 316 44 357 1.35e-65 211
Msa1450780 AT5G63170.1 36.810 326 162 5 22 316 10 322 6.72e-65 208
Msa1450780 AT5G03810.1 37.179 312 160 5 41 317 28 338 7.15e-65 208
Msa1450780 AT2G42990.1 36.570 309 161 5 39 313 24 331 4.26e-63 204
Msa1450780 AT4G26790.1 36.562 320 163 9 33 315 18 334 7.11e-63 203
Msa1450780 AT4G26790.2 36.562 320 163 9 33 315 18 334 7.11e-63 203
Msa1450780 AT1G23500.1 39.308 318 144 6 34 316 26 329 3.26e-62 201
Msa1450780 AT1G75920.2 39.130 322 147 7 33 317 19 328 3.53e-61 198
Msa1450780 AT1G20135.1 38.111 307 147 6 43 317 29 324 8.10e-60 194
Msa1450780 AT5G03820.1 33.913 345 188 7 10 317 1 342 1.72e-59 194
Msa1450780 AT5G03820.2 34.808 339 178 7 19 317 35 370 7.17e-59 194
Msa1450780 AT3G16370.1 34.483 319 173 4 32 315 19 336 3.38e-58 191
Msa1450780 AT1G75910.1 37.658 316 151 6 38 317 23 328 7.32e-58 190
Msa1450780 AT1G75920.1 37.389 337 147 8 33 317 14 338 2.81e-57 189
Msa1450780 AT5G22810.1 33.651 315 169 6 41 317 32 344 4.38e-55 183
Msa1450780 AT3G53100.1 34.431 334 174 7 19 315 9 334 7.11e-54 180
Msa1450780 AT5G45950.1 32.381 315 178 6 34 317 31 341 4.34e-51 172
Msa1450780 AT1G75920.4 35.974 303 146 6 52 317 9 300 2.70e-50 169
Msa1450780 AT1G29670.1 34.024 338 182 10 14 315 3 335 4.58e-50 170
Msa1450780 AT1G29670.2 34.024 338 182 10 14 315 71 403 1.85e-49 170
Msa1450780 AT5G33370.1 33.735 332 183 6 21 317 8 337 3.73e-48 165
Msa1450780 AT5G18430.1 33.430 344 183 7 12 317 2 337 4.79e-47 162
Msa1450780 AT2G24560.2 33.793 290 155 4 16 270 9 296 2.87e-46 159
Msa1450780 AT3G04290.1 33.648 318 174 6 35 317 21 336 3.21e-46 160
Msa1450780 AT5G45670.1 32.036 334 184 10 19 315 7 334 3.19e-45 157
Msa1450780 AT4G28780.1 31.176 340 197 6 13 317 1 338 1.91e-44 155
Msa1450780 AT1G75930.1 34.921 315 160 10 38 317 24 328 3.19e-44 154
Msa1450780 AT3G50400.1 30.460 348 199 8 10 315 1 347 5.27e-44 154
Msa1450780 AT4G18970.1 32.372 312 170 8 41 315 26 333 1.29e-43 153
Msa1450780 AT2G23540.1 30.460 348 197 11 12 315 14 360 1.97e-43 153
Msa1450780 AT4G18970.2 32.372 312 170 8 41 315 26 333 3.47e-43 153
Msa1450780 AT5G08460.1 33.333 312 167 6 42 314 48 357 3.54e-43 152
Msa1450780 AT1G75920.3 33.540 322 134 8 33 317 19 297 1.87e-42 149
Msa1450780 AT1G29660.1 31.138 334 182 9 19 315 14 336 5.59e-42 149
Msa1450780 AT1G71250.1 32.635 334 182 8 22 315 16 346 9.66e-42 149
Msa1450780 AT1G71691.2 32.362 309 170 8 41 315 53 356 2.77e-41 147
Msa1450780 AT1G33811.1 29.310 348 200 9 10 315 1 344 1.05e-40 146
Msa1450780 AT5G37690.1 29.129 333 190 8 21 315 6 330 5.42e-40 144
Msa1450780 AT5G15720.1 33.754 317 165 11 41 317 28 339 1.62e-39 142
Msa1450780 AT4G10950.2 31.290 310 176 7 41 315 69 376 7.84e-39 142
Msa1450780 AT2G19010.1 32.704 318 151 13 40 315 27 323 1.12e-37 137
Msa1450780 AT2G19010.2 32.704 318 151 13 40 315 57 353 1.93e-37 137
Msa1450780 AT4G10950.1 31.290 310 172 8 41 315 69 372 3.71e-36 134
Msa1450780 AT5G37690.2 28.228 333 185 9 21 315 6 322 2.23e-35 131
Msa1450780 AT5G55050.1 33.230 322 167 10 39 317 35 351 3.97e-35 131
Msa1450780 AT5G41890.1 31.348 319 168 10 45 315 33 348 9.78e-35 130
Msa1450780 AT1G53920.1 29.275 345 200 10 12 316 14 354 1.15e-34 130
Msa1450780 AT2G19060.1 32.492 317 157 14 41 317 28 327 2.23e-34 129
Msa1450780 AT1G74460.1 27.941 340 199 9 10 315 1 328 2.44e-34 129
Msa1450780 AT2G19050.1 30.351 313 163 12 41 315 29 324 5.06e-34 127
Msa1450780 AT5G33370.2 30.368 326 184 7 21 311 8 325 5.42e-33 124
Msa1450780 AT2G31550.1 32.673 202 101 2 150 316 1 202 1.33e-31 118
Msa1450780 AT2G03980.2 32.797 311 162 13 42 313 42 344 1.88e-31 121
Msa1450780 AT2G03980.3 32.797 311 162 13 42 313 42 344 1.88e-31 121
Msa1450780 AT2G03980.1 32.797 311 162 13 42 313 42 344 1.88e-31 121
Msa1450780 AT2G03980.4 32.797 311 162 13 42 313 42 344 1.88e-31 121
Msa1450780 AT1G53940.2 28.324 346 199 11 15 317 11 350 3.33e-29 115
Msa1450780 AT1G71120.1 30.159 315 174 9 40 317 28 333 2.37e-28 112
Msa1450780 AT2G04020.1 43.429 175 75 8 42 206 42 202 2.79e-27 107
Msa1450780 AT2G04020.2 34.122 296 136 17 42 313 42 302 7.02e-27 108
Msa1450780 AT5G40990.1 29.345 351 193 15 12 317 8 348 1.76e-26 107
Msa1450780 AT4G30140.1 30.225 311 166 12 40 315 30 324 5.94e-26 105
Msa1450780 AT4G16230.1 39.623 159 92 3 41 198 28 183 3.85e-25 101
Msa1450780 AT2G19050.2 30.556 252 130 9 41 257 29 270 4.65e-25 102
Msa1450780 AT5G15720.2 32.593 270 137 11 41 270 28 292 4.36e-24 100
Msa1450780 AT1G71691.3 29.924 264 146 8 41 270 53 311 1.61e-23 98.6
Msa1450780 AT1G54790.3 23.306 369 208 12 6 315 1 353 2.22e-23 99.4
Msa1450780 AT1G53990.1 28.086 324 165 12 43 317 35 339 5.91e-23 98.2
Msa1450780 AT1G71691.1 26.562 256 151 6 94 315 3 255 4.22e-22 94.4
Msa1450780 AT3G05180.1 24.695 328 188 8 42 315 35 357 2.26e-21 93.6
Msa1450780 AT1G28610.2 28.378 370 187 15 6 317 1 350 3.85e-21 93.2
Msa1450780 AT1G53940.1 33.641 217 122 8 15 227 11 209 4.98e-21 91.7
Msa1450780 AT2G27360.1 28.532 361 186 14 13 317 10 354 6.77e-21 92.4
Msa1450780 AT5G15720.3 29.134 254 139 8 104 317 56 308 1.00e-20 91.3
Msa1450780 AT3G14225.2 27.812 320 178 13 43 317 37 348 1.78e-20 91.3
Msa1450780 AT3G14225.1 27.864 323 178 13 43 317 37 352 2.22e-20 90.9
Msa1450780 AT1G28650.1 28.338 367 194 16 5 317 6 357 2.89e-20 90.5
Msa1450780 AT5G14450.1 25.137 366 206 10 9 317 10 364 2.04e-19 88.2
Msa1450780 AT1G28580.1 27.348 362 197 14 9 317 9 357 2.91e-19 87.8
Msa1450780 AT5G03610.1 27.215 316 171 12 44 317 44 342 4.27e-19 87.0
Msa1450780 AT1G28590.1 27.446 368 192 16 7 317 7 356 5.72e-19 87.0
Msa1450780 AT1G28570.1 28.297 364 192 15 9 317 5 354 4.91e-18 84.3
Msa1450780 AT1G31550.2 26.171 363 198 14 9 317 9 355 1.04e-17 83.6
Msa1450780 AT1G28600.1 26.776 366 198 16 6 317 1 350 1.87e-17 82.8
Msa1450780 AT5G45910.1 26.957 345 179 16 35 317 22 355 8.29e-17 80.5
Msa1450780 AT1G09390.1 26.989 352 198 14 10 315 6 344 4.36e-16 78.6
Msa1450780 AT1G56670.1 26.124 356 195 16 11 315 9 347 7.76e-16 77.8
Msa1450780 AT4G16233.1 38.542 96 58 1 221 315 8 103 4.70e-15 71.2
Msa1450780 AT1G31550.1 25.414 362 199 14 9 317 9 352 8.77e-15 74.7
Msa1450780 AT4G16220.1 46.875 96 46 3 41 136 28 118 1.68e-14 72.4
Msa1450780 AT1G54000.1 23.881 335 201 11 21 317 14 332 7.18e-13 68.9

Find 71 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGATTATGCTGATCTTA+TGG 0.251081 tig0033048:+34939 Msa1450780:CDS
TCCTGCTGTTTGGATAATTC+TGG 0.287953 tig0033048:-35524 None:intergenic
AAATCACTGGGCTGGAGATT+TGG 0.299729 tig0033048:-34539 None:intergenic
GTTTGGATAATTCTGGTTAA+AGG 0.300373 tig0033048:-35517 None:intergenic
AAAGAAAGGGAATTCATTAA+AGG 0.307233 tig0033048:-32773 None:intergenic
ATGATATGGAGTTTGTCTTT+TGG 0.317220 tig0033048:+36945 Msa1450780:CDS
GTTCCAGCAGTGTTGGTGTT+TGG 0.319690 tig0033048:+32872 Msa1450780:CDS
GGATATAAAGTGGAAGATAA+AGG 0.350027 tig0033048:+36857 Msa1450780:intron
AGAATTTCTACCAGCATACT+TGG 0.356901 tig0033048:+34514 Msa1450780:CDS
TTCTACGTGTCCAAATGATA+TGG 0.363550 tig0033048:+36931 Msa1450780:CDS
GCATATGCTAGTATATATTA+TGG 0.364303 tig0033048:+32748 Msa1450780:exon
TTGTGGTCAGTTGAAGAATT+AGG 0.371518 tig0033048:+34485 Msa1450780:intron
ATTGTAAACTCTAATAAATA+TGG 0.372700 tig0033048:+35585 Msa1450780:CDS
AAGACAAACTCCATATCATT+TGG 0.391476 tig0033048:-36960 None:intergenic
TGTCGATTTAGCATTTGTTA+TGG 0.398099 tig0033048:+32629 Msa1450780:five_prime_UTR
CCTTTGAAATCTTTCCCATA+AGG 0.400518 tig0033048:-32962 None:intergenic
CAGTCAGCAATATCATTATC+TGG 0.410346 tig0033048:+34751 Msa1450780:intron
CAAGTAATATTATTATGAAA+TGG 0.416031 tig0033048:-32802 None:intergenic
ACCATAAGATCAGCATAATC+AGG 0.417873 tig0033048:-34940 None:intergenic
GGAGATTCTATCGTGGATAC+AGG 0.422024 tig0033048:+32893 Msa1450780:CDS
GGAAAATTAAGAGGACTTGT+TGG 0.429168 tig0033048:+34802 Msa1450780:CDS
CATAATCAGGAAAATCATAC+TGG 0.431311 tig0033048:-34927 None:intergenic
CTGAAACATTTGGTGGAAGT+TGG 0.433865 tig0033048:-32850 None:intergenic
ATGTAAACAATCCTGCTGTT+TGG 0.434657 tig0033048:-35534 None:intergenic
GATATAAAGTGGAAGATAAA+GGG 0.438720 tig0033048:+36858 Msa1450780:CDS
CCATTTCAGAGAACAGCTGC+TGG 0.443466 tig0033048:+35414 Msa1450780:intron
TACAACAGCAAATTGTCAAA+GGG 0.443709 tig0033048:+35486 Msa1450780:CDS
TTCAAAGGAGGGATTCCAAC+AGG 0.451153 tig0033048:+32977 Msa1450780:CDS
CAGCCCAGTGATTTACCTAC+TGG 0.453091 tig0033048:+34548 Msa1450780:CDS
TCTCCAAACACCAACACTGC+TGG 0.455954 tig0033048:-32875 None:intergenic
ATGCTTCTCATATTTAGAAA+AGG 0.461940 tig0033048:+32694 Msa1450780:five_prime_UTR
ATTCTTTGAACAAATCTAGT+TGG 0.462739 tig0033048:-34774 None:intergenic
ACCAGAATTATCCAAACAGC+AGG 0.467487 tig0033048:+35523 Msa1450780:CDS
ACTGCTGGAACTGAAACATT+TGG 0.480723 tig0033048:-32860 None:intergenic
GATAAAGGGTGTTGTGGCAC+GGG 0.481643 tig0033048:+36872 Msa1450780:CDS
TTGGACACGTAGAAGACAAA+TGG 0.488601 tig0033048:-36941 None:intergenic
AAAGTTCCCTCAGACTTCAT+AGG 0.491281 tig0033048:+33016 Msa1450780:CDS
CTTGTTGCATGTAAAACAAA+GGG 0.493568 tig0033048:+32821 Msa1450780:CDS
GTAATTTACAGGATATAAAG+TGG 0.495715 tig0033048:+36847 Msa1450780:intron
TTGAAATCTTTCCCATAAGG+TGG 0.509489 tig0033048:-32959 None:intergenic
CCATTGCTAAATCTTCCTGT+TGG 0.510054 tig0033048:-32992 None:intergenic
TCCTTTGACATCTCAAACTG+CGG 0.523946 tig0033048:+34604 Msa1450780:CDS
TGTTTCAGTTCCAGCAGTGT+TGG 0.525916 tig0033048:+32865 Msa1450780:CDS
AGACAGAACAAACTTCATCT+TGG 0.527036 tig0033048:+34828 Msa1450780:CDS
ATACAACAGCAAATTGTCAA+AGG 0.532727 tig0033048:+35485 Msa1450780:CDS
ACTTGTTGCATGTAAAACAA+AGG 0.543187 tig0033048:+32820 Msa1450780:CDS
GAATACATAGGAAAATTAAG+AGG 0.545890 tig0033048:+34793 Msa1450780:CDS
GCGAGACAAGAAATATGTGT+TGG 0.549615 tig0033048:-34893 None:intergenic
TTGTGGCACGGGCATAATTG+AGG 0.552013 tig0033048:+36883 Msa1450780:CDS
CAGTAGGTAAATCACTGGGC+TGG 0.554672 tig0033048:-34547 None:intergenic
AGATAAAGGGTGTTGTGGCA+CGG 0.555443 tig0033048:+36871 Msa1450780:CDS
CACACCAGTAGGTAAATCAC+TGG 0.556309 tig0033048:-34552 None:intergenic
GCTGGAACTGAAACATTTGG+TGG 0.559299 tig0033048:-32857 None:intergenic
TATGGGAAAGATTTCAAAGG+AGG 0.566990 tig0033048:+32965 Msa1450780:CDS
AGATTTGGATCCAAGTATGC+TGG 0.578680 tig0033048:-34524 None:intergenic
ATGGGAAAGATTTCAAAGGA+GGG 0.579064 tig0033048:+32966 Msa1450780:CDS
TGTAGTACCTATGAAGTCTG+AGG 0.593842 tig0033048:-33023 None:intergenic
GTGGAAGATAAAGGGTGTTG+TGG 0.599401 tig0033048:+36866 Msa1450780:CDS
CCTTATGGGAAAGATTTCAA+AGG 0.615497 tig0033048:+32962 Msa1450780:CDS
TTACAATGATGTCAAGCAGA+GGG 0.617872 tig0033048:-35569 None:intergenic
GATGCAAAACACACACCAGT+AGG 0.626175 tig0033048:-34563 None:intergenic
GATTTGTTCAAAGAATACAT+AGG 0.632933 tig0033048:+34781 Msa1450780:CDS
CCAACAGGAAGATTTAGCAA+TGG 0.634651 tig0033048:+32992 Msa1450780:CDS
ACAACAGCAAATTGTCAAAG+GGG 0.637819 tig0033048:+35487 Msa1450780:CDS
GTAGTACCTATGAAGTCTGA+GGG 0.653162 tig0033048:-33022 None:intergenic
TTTCAGAGAACAGCTGCTGG+AGG 0.657240 tig0033048:+35417 Msa1450780:intron
TTTACAATGATGTCAAGCAG+AGG 0.658645 tig0033048:-35570 None:intergenic
ACCGCAGTTTGAGATGTCAA+AGG 0.661904 tig0033048:-34605 None:intergenic
CATTACTGCCCAATACCACA+AGG 0.663942 tig0033048:-34864 None:intergenic
GGTGTTTGGAGATTCTATCG+TGG 0.689331 tig0033048:+32886 Msa1450780:CDS
ACACCAGTAGGTAAATCACT+GGG 0.703062 tig0033048:-34551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATACATAATATATATA+AGG + tig0033048:33593-33612 Msa1450780:intron 10.0%
!! TAAAATAAATACATACATAT+GGG + tig0033048:33975-33994 Msa1450780:intron 10.0%
!!! TTCAATACATATATTTTAAT+CGG - tig0033048:35164-35183 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAATACT+TGG - tig0033048:35305-35324 None:intergenic 10.0%
!!! CAAGTATTTTTTTTTTTTTT+TGG + tig0033048:35303-35322 Msa1450780:intron 10.0%
!! TAAATTCTTAAAAAAAATGA+GGG - tig0033048:35775-35794 None:intergenic 10.0%
!! TTAAATTCTTAAAAAAAATG+AGG - tig0033048:35776-35795 None:intergenic 10.0%
!!! AAATTCTACTTTTTATTTTT+TGG + tig0033048:36576-36595 Msa1450780:intron 10.0%
!! AAAACTAAAAATGTTTATAA+AGG - tig0033048:36744-36763 None:intergenic 10.0%
!! CAAGTAATATTATTATGAAA+TGG - tig0033048:32805-32824 None:intergenic 15.0%
!!! ATTTTTTTTCGAACTTTTAA+AGG + tig0033048:33153-33172 Msa1450780:intron 15.0%
!!! TTTTTTTTCGAACTTTTAAA+GGG + tig0033048:33154-33173 Msa1450780:intron 15.0%
!! AAAATGCAATAAATAAAAAC+TGG + tig0033048:33323-33342 Msa1450780:intron 15.0%
!!! TAGTTTGATTATGTTTTATA+TGG - tig0033048:33703-33722 None:intergenic 15.0%
!! GTAAAATAAATACATACATA+TGG + tig0033048:33974-33993 Msa1450780:intron 15.0%
!!! TAACTTCTAAAAAGATATTA+GGG - tig0033048:34646-34665 None:intergenic 15.0%
!!! TCACTTTTATAGTTATAAAA+TGG + tig0033048:35263-35282 Msa1450780:intron 15.0%
!! AAAAAAAAAAATACTTGGTA+AGG - tig0033048:35300-35319 None:intergenic 15.0%
!! ATTGTAAACTCTAATAAATA+TGG + tig0033048:35585-35604 Msa1450780:CDS 15.0%
!! AAATTAAAGAAGTTTCATAT+AGG - tig0033048:35981-36000 None:intergenic 15.0%
!!! TTTGAAATTTTTATACTTTG+AGG - tig0033048:36112-36131 None:intergenic 15.0%
!!! ACAATAACATTTTTCATATA+AGG - tig0033048:36258-36277 None:intergenic 15.0%
!!! TATGTTTTATATGGAATATC+AGG - tig0033048:33694-33713 None:intergenic 20.0%
!! TAAAACATAATCAAACTACT+AGG + tig0033048:33705-33724 Msa1450780:intron 20.0%
!! AAAAAAATATAGTAACTAGC+TGG - tig0033048:33911-33930 None:intergenic 20.0%
!! TTGTATGATGATAATTTCTA+TGG - tig0033048:34041-34060 None:intergenic 20.0%
!! TTTATTAACTAGTGCTTTAA+GGG - tig0033048:34395-34414 None:intergenic 20.0%
!! ATTTATTAACTAGTGCTTTA+AGG - tig0033048:34396-34415 None:intergenic 20.0%
!!! AACTTCTAAAAAGATATTAG+GGG - tig0033048:34645-34664 None:intergenic 20.0%
!!! GTAACTTCTAAAAAGATATT+AGG - tig0033048:34647-34666 None:intergenic 20.0%
!!! CAAGTTAAGTAAGTTTTTAA+TGG - tig0033048:34669-34688 None:intergenic 20.0%
!! GTTGAAAATTAAAAAATAGG+TGG - tig0033048:35728-35747 None:intergenic 20.0%
!! AGGGTTGAAAATTAAAAAAT+AGG - tig0033048:35731-35750 None:intergenic 20.0%
!! AAAATTGAACCTAAACTTTA+AGG + tig0033048:35827-35846 Msa1450780:intron 20.0%
!!! ATTTAAGTTTAAATGACTTG+AGG - tig0033048:36015-36034 None:intergenic 20.0%
!!! AAATGGAATATTAGTCATTT+TGG - tig0033048:36439-36458 None:intergenic 20.0%
!! CTAATATTCCATTTGTAAAT+TGG + tig0033048:36445-36464 Msa1450780:intron 20.0%
!!! TATGTTCCTACATTTTAATT+AGG - tig0033048:36648-36667 None:intergenic 20.0%
! ATGCTTCTCATATTTAGAAA+AGG + tig0033048:32694-32713 Msa1450780:five_prime_UTR 25.0%
! GCATATGCTAGTATATATTA+TGG + tig0033048:32748-32767 Msa1450780:exon 25.0%
! AAAGAAAGGGAATTCATTAA+AGG - tig0033048:32776-32795 None:intergenic 25.0%
! GAAATGGAGAAAAAAAGAAA+GGG - tig0033048:32789-32808 None:intergenic 25.0%
! TGAAATGGAGAAAAAAAGAA+AGG - tig0033048:32790-32809 None:intergenic 25.0%
!! ATGTTTAGAATACTCTAAGA+TGG - tig0033048:33181-33200 None:intergenic 25.0%
!! TCTTAGAGTATTCTAAACAT+AGG + tig0033048:33181-33200 Msa1450780:intron 25.0%
!! CTTAGAGTATTCTAAACATA+GGG + tig0033048:33182-33201 Msa1450780:intron 25.0%
!! CATAATTGAATCGGTTTAAT+CGG + tig0033048:33236-33255 Msa1450780:intron 25.0%
! TAGTTTATTTATCCGTGATT+CGG - tig0033048:33270-33289 None:intergenic 25.0%
!! AAAAGTAGTAACTTTTGCAT+TGG - tig0033048:33467-33486 None:intergenic 25.0%
! TTTGAGTATATATTGTCATC+AGG - tig0033048:33545-33564 None:intergenic 25.0%
! TAATGACTTAATCTTGATTG+TGG - tig0033048:33740-33759 None:intergenic 25.0%
! ACAATCAAGATTAAGTCATT+AGG + tig0033048:33739-33758 Msa1450780:intron 25.0%
! TTAGTGAGTGTAAATACAAA+AGG - tig0033048:33857-33876 None:intergenic 25.0%
! GATAATTTCTATGGAATCTT+GGG - tig0033048:34032-34051 None:intergenic 25.0%
! TGATAATTTCTATGGAATCT+TGG - tig0033048:34033-34052 None:intergenic 25.0%
!! TATGTAGTACATTTTTGAAC+AGG + tig0033048:34148-34167 Msa1450780:intron 25.0%
!! ATGTAGTACATTTTTGAACA+GGG + tig0033048:34149-34168 Msa1450780:intron 25.0%
! ATGATACAAGTAAGAATAGA+TGG + tig0033048:34288-34307 Msa1450780:intron 25.0%
! ATCACAAACAAGTATATACA+CGG - tig0033048:34353-34372 None:intergenic 25.0%
!!! TAACCTACTTTTTTGTATTG+TGG + tig0033048:34468-34487 Msa1450780:intron 25.0%
! ATTCTTTGAACAAATCTAGT+TGG - tig0033048:34777-34796 None:intergenic 25.0%
!! GATTTGTTCAAAGAATACAT+AGG + tig0033048:34781-34800 Msa1450780:CDS 25.0%
! GAATACATAGGAAAATTAAG+AGG + tig0033048:34793-34812 Msa1450780:CDS 25.0%
! TTCAGCTTCTAATTTCTTAA+AGG + tig0033048:34966-34985 Msa1450780:intron 25.0%
! TTAACAAGTTGCAAATATCT+TGG + tig0033048:35001-35020 Msa1450780:intron 25.0%
! TAACAAGTTGCAAATATCTT+GGG + tig0033048:35002-35021 Msa1450780:intron 25.0%
! CAACACACATTCATTTAAAT+TGG + tig0033048:35065-35084 Msa1450780:intron 25.0%
! TAATCGGTTGAAATTCAAAT+TGG - tig0033048:35148-35167 None:intergenic 25.0%
!! ATGGTAATTACAACTTTTGT+TGG + tig0033048:35604-35623 Msa1450780:intron 25.0%
! TTTGTTGGATTATTTGAACA+AGG + tig0033048:35619-35638 Msa1450780:intron 25.0%
!!! GTTAAGATGTTTTTAAGTAG+TGG - tig0033048:35691-35710 None:intergenic 25.0%
! TCTCATTTAAACTTGAATGA+GGG - tig0033048:35750-35769 None:intergenic 25.0%
! TCTCTGATGCTAATTAATTT+GGG - tig0033048:35808-35827 None:intergenic 25.0%
! TTCTCTGATGCTAATTAATT+TGG - tig0033048:35809-35828 None:intergenic 25.0%
! GCAATTTATAAACACATTAG+TGG + tig0033048:35933-35952 Msa1450780:intron 25.0%
! CTATTACCTCATTTACAAAT+GGG - tig0033048:36047-36066 None:intergenic 25.0%
! ACTATTACCTCATTTACAAA+TGG - tig0033048:36048-36067 None:intergenic 25.0%
! ACAATAAGTATGCATATTGA+AGG - tig0033048:36194-36213 None:intergenic 25.0%
!! TCATTACAACTTTAGTTTCA+GGG + tig0033048:36412-36431 Msa1450780:intron 25.0%
! TCTACTATCCAATTTACAAA+TGG - tig0033048:36456-36475 None:intergenic 25.0%
! TTTGAGAAAAAGCTTAAAAG+AGG - tig0033048:36497-36516 None:intergenic 25.0%
!!! TCTTTTAAGCTTTTTCTCAA+AGG + tig0033048:36496-36515 Msa1450780:intron 25.0%
!!! CTTTTAAGCTTTTTCTCAAA+GGG + tig0033048:36497-36516 Msa1450780:intron 25.0%
!!! TTTTTAGTTGTATAGTCTCA+AGG + tig0033048:36545-36564 Msa1450780:intron 25.0%
!!! TTTATTTTTTGGCTAGTTAG+TGG + tig0033048:36587-36606 Msa1450780:intron 25.0%
!!! TTATTTTTTGGCTAGTTAGT+GGG + tig0033048:36588-36607 Msa1450780:intron 25.0%
! TTAGCGAAATTGTAATTTAC+AGG + tig0033048:36836-36855 Msa1450780:intron 25.0%
! GTAATTTACAGGATATAAAG+TGG + tig0033048:36847-36866 Msa1450780:intron 25.0%
! GATATAAAGTGGAAGATAAA+GGG + tig0033048:36858-36877 Msa1450780:CDS 25.0%
!! TGTCGATTTAGCATTTGTTA+TGG + tig0033048:32629-32648 Msa1450780:five_prime_UTR 30.0%
! ACTTGTTGCATGTAAAACAA+AGG + tig0033048:32820-32839 Msa1450780:CDS 30.0%
CTTGTTGCATGTAAAACAAA+GGG + tig0033048:32821-32840 Msa1450780:CDS 30.0%
! TTCCCTTTTGTCTTATACAT+CGG - tig0033048:33111-33130 None:intergenic 30.0%
CTAAACATAGGGATTCAAAA+TGG + tig0033048:33193-33212 Msa1450780:intron 30.0%
ATGGAATCATTATGACATCT+AGG + tig0033048:33212-33231 Msa1450780:intron 30.0%
CATCTAGGTCATAATTGAAT+CGG + tig0033048:33227-33246 Msa1450780:intron 30.0%
AAAACTGGTTGAATCAATTG+CGG + tig0033048:33338-33357 Msa1450780:intron 30.0%
TCAATTGCGGTTATTTAGTT+AGG + tig0033048:33351-33370 Msa1450780:intron 30.0%
CAATTGCGGTTATTTAGTTA+GGG + tig0033048:33352-33371 Msa1450780:intron 30.0%
!! TATTTTTAACAAGTGCCCTA+AGG + tig0033048:33375-33394 Msa1450780:intron 30.0%
! ATTTTTAACAAGTGCCCTAA+GGG + tig0033048:33376-33395 Msa1450780:intron 30.0%
! AAGACATATTTTCCTTCTGT+GGG - tig0033048:33416-33435 None:intergenic 30.0%
TATGCTTAAACAATGTCCTT+AGG + tig0033048:33488-33507 Msa1450780:intron 30.0%
AAAATGTTAACAAGTGCCTA+AGG - tig0033048:33507-33526 None:intergenic 30.0%
TCATCAGGACAATAACTAAA+TGG - tig0033048:33530-33549 None:intergenic 30.0%
CACATTCTTTATCTTGTATG+CGG - tig0033048:33653-33672 None:intergenic 30.0%
GATAAAGAATGTGGTTATCT+AGG + tig0033048:33660-33679 Msa1450780:intron 30.0%
TAGAAACTAAAGTGAATCGA+CGG - tig0033048:33799-33818 None:intergenic 30.0%
TAAATACATACATATGGGAG+AGG + tig0033048:33980-33999 Msa1450780:intron 30.0%
CAAGTATATACACGGATTTA+GGG - tig0033048:34345-34364 None:intergenic 30.0%
ACAAGTATATACACGGATTT+AGG - tig0033048:34346-34365 None:intergenic 30.0%
TGACCACAATACAAAAAAGT+AGG - tig0033048:34474-34493 None:intergenic 30.0%
CATAATCAGGAAAATCATAC+TGG - tig0033048:34930-34949 None:intergenic 30.0%
TGATATCCTCTGAATCATAT+AGG + tig0033048:35101-35120 Msa1450780:intron 30.0%
! TTCCTTTCATTTGTATTGAC+AGG - tig0033048:35334-35353 None:intergenic 30.0%
TGAAAGGAAATATATGAGCT+AGG + tig0033048:35345-35364 Msa1450780:intron 30.0%
ATACAACAGCAAATTGTCAA+AGG + tig0033048:35485-35504 Msa1450780:CDS 30.0%
TACAACAGCAAATTGTCAAA+GGG + tig0033048:35486-35505 Msa1450780:CDS 30.0%
! GTTTGGATAATTCTGGTTAA+AGG - tig0033048:35520-35539 None:intergenic 30.0%
ATTATTTGAACAAGGTCACT+TGG + tig0033048:35627-35646 Msa1450780:intron 30.0%
TTATTTGAACAAGGTCACTT+GGG + tig0033048:35628-35647 Msa1450780:intron 30.0%
GTCTCATTTAAACTTGAATG+AGG - tig0033048:35751-35770 None:intergenic 30.0%
! TGATGCTAATTAATTTGGGT+GGG - tig0033048:35804-35823 None:intergenic 30.0%
TATGCTTCTCCTTAAAGTTT+AGG - tig0033048:35839-35858 None:intergenic 30.0%
TTTGAATATGAAACCCACTT+AGG - tig0033048:35895-35914 None:intergenic 30.0%
ATTTGACCCATTTGTAAATG+AGG + tig0033048:36038-36057 Msa1450780:intron 30.0%
GACTATTCATTACACATTCA+GGG - tig0033048:36080-36099 None:intergenic 30.0%
TGACTATTCATTACACATTC+AGG - tig0033048:36081-36100 None:intergenic 30.0%
ACTAATGAGTTGCACAATTA+GGG - tig0033048:36140-36159 None:intergenic 30.0%
AACTAATGAGTTGCACAATT+AGG - tig0033048:36141-36160 None:intergenic 30.0%
! CTCATTACAACTTTAGTTTC+AGG + tig0033048:36411-36430 Msa1450780:intron 30.0%
! CATTACAACTTTAGTTTCAG+GGG + tig0033048:36413-36432 Msa1450780:intron 30.0%
CACATGCCTAATTAAAATGT+AGG + tig0033048:36639-36658 Msa1450780:intron 30.0%
TTTATTCATCCTCACTTGTA+TGG + tig0033048:36764-36783 Msa1450780:intron 30.0%
AATAAGTTTCCATACAAGTG+AGG - tig0033048:36776-36795 None:intergenic 30.0%
GGATATAAAGTGGAAGATAA+AGG + tig0033048:36857-36876 Msa1450780:intron 30.0%
AAGACAAACTCCATATCATT+TGG - tig0033048:36944-36963 None:intergenic 30.0%
! ATGATATGGAGTTTGTCTTT+TGG + tig0033048:36945-36964 Msa1450780:CDS 30.0%
! TGATATGGAGTTTGTCTTTT+GGG + tig0033048:36946-36965 Msa1450780:CDS 30.0%
! GTTGCAATTTTCCACCTTAT+GGG + tig0033048:32948-32967 Msa1450780:CDS 35.0%
TTGAAATCTTTCCCATAAGG+TGG - tig0033048:32962-32981 None:intergenic 35.0%
!! CCTTTGAAATCTTTCCCATA+AGG - tig0033048:32965-32984 None:intergenic 35.0%
CCTTATGGGAAAGATTTCAA+AGG + tig0033048:32962-32981 Msa1450780:CDS 35.0%
TATGGGAAAGATTTCAAAGG+AGG + tig0033048:32965-32984 Msa1450780:CDS 35.0%
ATGGGAAAGATTTCAAAGGA+GGG + tig0033048:32966-32985 Msa1450780:CDS 35.0%
TGAAATACTACTTGTCTAGC+AGG - tig0033048:33068-33087 None:intergenic 35.0%
TGACCGATGTATAAGACAAA+AGG + tig0033048:33105-33124 Msa1450780:intron 35.0%
GACCGATGTATAAGACAAAA+GGG + tig0033048:33106-33125 Msa1450780:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - tig0033048:33393-33412 None:intergenic 35.0%
! CAAGACATATTTTCCTTCTG+TGG - tig0033048:33417-33436 None:intergenic 35.0%
!!! CTTGTATGCGGTCTTTTTTA+TGG - tig0033048:33641-33660 None:intergenic 35.0%
CGCATACAAGATAAAGAATG+TGG + tig0033048:33651-33670 Msa1450780:intron 35.0%
GAGTGTAAATACAAAAGGAC+CGG - tig0033048:33852-33871 None:intergenic 35.0%
ATGGAATCTTGGGTTTGAAT+TGG - tig0033048:34022-34041 None:intergenic 35.0%
TTGAACAGGGTAATCAGTAA+AGG + tig0033048:34162-34181 Msa1450780:intron 35.0%
TATATACACGGATTTAGGGA+TGG - tig0033048:34341-34360 None:intergenic 35.0%
TTGTGGTCAGTTGAAGAATT+AGG + tig0033048:34485-34504 Msa1450780:intron 35.0%
AGAATTTCTACCAGCATACT+TGG + tig0033048:34514-34533 Msa1450780:CDS 35.0%
CAGTCAGCAATATCATTATC+TGG + tig0033048:34751-34770 Msa1450780:intron 35.0%
GGAAAATTAAGAGGACTTGT+TGG + tig0033048:34802-34821 Msa1450780:CDS 35.0%
AGACAGAACAAACTTCATCT+TGG + tig0033048:34828-34847 Msa1450780:CDS 35.0%
! TAGTCTTTTCCTTGTGGTAT+TGG + tig0033048:34855-34874 Msa1450780:CDS 35.0%
! AGTCTTTTCCTTGTGGTATT+GGG + tig0033048:34856-34875 Msa1450780:CDS 35.0%
TCCTGATTATGCTGATCTTA+TGG + tig0033048:34939-34958 Msa1450780:CDS 35.0%
ACCATAAGATCAGCATAATC+AGG - tig0033048:34943-34962 None:intergenic 35.0%
GTGAAACCTATATGATTCAG+AGG - tig0033048:35110-35129 None:intergenic 35.0%
TCAAGTCTCAACACAAAAAC+TGG + tig0033048:35236-35255 Msa1450780:intron 35.0%
! CTTTCATTTGTATTGACAGG+TGG - tig0033048:35331-35350 None:intergenic 35.0%
CACCTGTCAATACAAATGAA+AGG + tig0033048:35329-35348 Msa1450780:intron 35.0%
AAATATATGAGCTAGGTGCA+AGG + tig0033048:35352-35371 Msa1450780:intron 35.0%
TATTCAATGCACCACCAATT+GGG + tig0033048:35385-35404 Msa1450780:intron 35.0%
ACAACAGCAAATTGTCAAAG+GGG + tig0033048:35487-35506 Msa1450780:CDS 35.0%
ATGTAAACAATCCTGCTGTT+TGG - tig0033048:35537-35556 None:intergenic 35.0%
TTACAATGATGTCAAGCAGA+GGG - tig0033048:35572-35591 None:intergenic 35.0%
TTTACAATGATGTCAAGCAG+AGG - tig0033048:35573-35592 None:intergenic 35.0%
ACTTGGGTATTTGAACTAGT+CGG + tig0033048:35644-35663 Msa1450780:intron 35.0%
! CTGATGCTAATTAATTTGGG+TGG - tig0033048:35805-35824 None:intergenic 35.0%
! TTAAGGAGAAGCATACTCTT+AGG + tig0033048:35844-35863 Msa1450780:intron 35.0%
GGACATAACTCTGATACTAA+TGG + tig0033048:36609-36628 Msa1450780:intron 35.0%
ATGAGTGTTCATAAGTGTGA+AGG + tig0033048:36676-36695 Msa1450780:intron 35.0%
!!! GTCTTTTGGTTCCAACTTTT+AGG - tig0033048:36709-36728 None:intergenic 35.0%
! GGTGTAGAATTTGAGTCTTT+TGG - tig0033048:36723-36742 None:intergenic 35.0%
TTCTACGTGTCCAAATGATA+TGG + tig0033048:36931-36950 Msa1450780:CDS 35.0%
! CTGAAACATTTGGTGGAAGT+TGG - tig0033048:32853-32872 None:intergenic 40.0%
ACTGCTGGAACTGAAACATT+TGG - tig0033048:32863-32882 None:intergenic 40.0%
! CGTTGCAATTTTCCACCTTA+TGG + tig0033048:32947-32966 Msa1450780:CDS 40.0%
CCATTGCTAAATCTTCCTGT+TGG - tig0033048:32995-33014 None:intergenic 40.0%
CCAACAGGAAGATTTAGCAA+TGG + tig0033048:32992-33011 Msa1450780:CDS 40.0%
AAAGTTCCCTCAGACTTCAT+AGG + tig0033048:33016-33035 Msa1450780:CDS 40.0%
GTAGTACCTATGAAGTCTGA+GGG - tig0033048:33025-33044 None:intergenic 40.0%
TGTAGTACCTATGAAGTCTG+AGG - tig0033048:33026-33045 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - tig0033048:33394-33413 None:intergenic 40.0%
TTGTTTAAGGAACCCACAGA+AGG + tig0033048:33401-33420 Msa1450780:intron 40.0%
!!! GGTCTTTTTTATGGTGGTTG+AGG - tig0033048:33632-33651 None:intergenic 40.0%
!!! GTATGCGGTCTTTTTTATGG+TGG - tig0033048:33638-33657 None:intergenic 40.0%
AGATTTGGATCCAAGTATGC+TGG - tig0033048:34527-34546 None:intergenic 40.0%
ACACCAGTAGGTAAATCACT+GGG - tig0033048:34554-34573 None:intergenic 40.0%
TCCTTTGACATCTCAAACTG+CGG + tig0033048:34604-34623 Msa1450780:CDS 40.0%
! GGCAAATAGTCTTTTCCTTG+TGG + tig0033048:34849-34868 Msa1450780:CDS 40.0%
GCGAGACAAGAAATATGTGT+TGG - tig0033048:34896-34915 None:intergenic 40.0%
GTATTCAATGCACCACCAAT+TGG + tig0033048:35384-35403 Msa1450780:intron 40.0%
TGAAATGGCAAACACCCAAT+TGG - tig0033048:35402-35421 None:intergenic 40.0%
ACCAGAATTATCCAAACAGC+AGG + tig0033048:35523-35542 Msa1450780:CDS 40.0%
! TCCTGCTGTTTGGATAATTC+TGG - tig0033048:35527-35546 None:intergenic 40.0%
!! AGCTTTTTCTCAAAGGGACA+TGG + tig0033048:36503-36522 Msa1450780:intron 40.0%
GTGTTCATAAGTGTGAAGGT+CGG + tig0033048:36680-36699 Msa1450780:intron 40.0%
TTGGACACGTAGAAGACAAA+TGG - tig0033048:36925-36944 None:intergenic 40.0%
GCTGGAACTGAAACATTTGG+TGG - tig0033048:32860-32879 None:intergenic 45.0%
TGTTTCAGTTCCAGCAGTGT+TGG + tig0033048:32865-32884 Msa1450780:CDS 45.0%
GGTGTTTGGAGATTCTATCG+TGG + tig0033048:32886-32905 Msa1450780:CDS 45.0%
GGAGATTCTATCGTGGATAC+AGG + tig0033048:32893-32912 Msa1450780:CDS 45.0%
TTCAAAGGAGGGATTCCAAC+AGG + tig0033048:32977-32996 Msa1450780:CDS 45.0%
TCGGTCTTTCAACCGAATCA+CGG + tig0033048:33255-33274 Msa1450780:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + tig0033048:33388-33407 Msa1450780:intron 45.0%
AATATTGCCACCTCACCTCA+AGG + tig0033048:33820-33839 Msa1450780:intron 45.0%
! AAATCACTGGGCTGGAGATT+TGG - tig0033048:34542-34561 None:intergenic 45.0%
CACACCAGTAGGTAAATCAC+TGG - tig0033048:34555-34574 None:intergenic 45.0%
GATGCAAAACACACACCAGT+AGG - tig0033048:34566-34585 None:intergenic 45.0%
! ACTGGTGTGTGTTTTGCATC+TGG + tig0033048:34566-34585 Msa1450780:CDS 45.0%
! ACCGCAGTTTGAGATGTCAA+AGG - tig0033048:34608-34627 None:intergenic 45.0%
CATTACTGCCCAATACCACA+AGG - tig0033048:34867-34886 None:intergenic 45.0%
TATATGAGCTAGGTGCAAGG+AGG + tig0033048:35355-35374 Msa1450780:intron 45.0%
AATGGCAAACACCCAATTGG+TGG - tig0033048:35399-35418 None:intergenic 45.0%
!! CTAGTCGGTGTTATTGAGTG+TGG + tig0033048:35659-35678 Msa1450780:intron 45.0%
TACCACCAGACTAACCTAAG+TGG + tig0033048:35878-35897 Msa1450780:intron 45.0%
ACCACCAGACTAACCTAAGT+GGG + tig0033048:35879-35898 Msa1450780:intron 45.0%
! GAAACCCACTTAGGTTAGTC+TGG - tig0033048:35886-35905 None:intergenic 45.0%
AAGGTCGGTGACCTAAAAGT+TGG + tig0033048:36695-36714 Msa1450780:intron 45.0%
!! GTGGAAGATAAAGGGTGTTG+TGG + tig0033048:36866-36885 Msa1450780:CDS 45.0%
!! AGATAAAGGGTGTTGTGGCA+CGG + tig0033048:36871-36890 Msa1450780:CDS 45.0%
!! GTTCCAGCAGTGTTGGTGTT+TGG + tig0033048:32872-32891 Msa1450780:CDS 50.0%
TCTCCAAACACCAACACTGC+TGG - tig0033048:32878-32897 None:intergenic 50.0%
GCTTTAACCTTGAGGTGAGG+TGG - tig0033048:33830-33849 None:intergenic 50.0%
CCTCACCTCAAGGTTAAAGC+CGG + tig0033048:33830-33849 Msa1450780:intron 50.0%
! AAGGACCGGCTTTAACCTTG+AGG - tig0033048:33838-33857 None:intergenic 50.0%
!! TGGCAATGAGGATGATGGGT+GGG - tig0033048:34321-34340 None:intergenic 50.0%
!! ATGGCAATGAGGATGATGGG+TGG - tig0033048:34322-34341 None:intergenic 50.0%
GGGATGGCAATGAGGATGAT+GGG - tig0033048:34325-34344 None:intergenic 50.0%
AGGGATGGCAATGAGGATGA+TGG - tig0033048:34326-34345 None:intergenic 50.0%
CGGATTTAGGGATGGCAATG+AGG - tig0033048:34333-34352 None:intergenic 50.0%
CAGTAGGTAAATCACTGGGC+TGG - tig0033048:34550-34569 None:intergenic 50.0%
CAGCCCAGTGATTTACCTAC+TGG + tig0033048:34548-34567 Msa1450780:CDS 50.0%
! GGTGTGTGTTTTGCATCTGG+TGG + tig0033048:34569-34588 Msa1450780:CDS 50.0%
!! TGTTTTGCATCTGGTGGTGC+TGG + tig0033048:34575-34594 Msa1450780:CDS 50.0%
! CCAGCAGCTGTTCTCTGAAA+TGG - tig0033048:35417-35436 None:intergenic 50.0%
CCATTTCAGAGAACAGCTGC+TGG + tig0033048:35414-35433 Msa1450780:intron 50.0%
TTTCAGAGAACAGCTGCTGG+AGG + tig0033048:35417-35436 Msa1450780:intron 50.0%
!! ACCCACTTAGGTTAGTCTGG+TGG - tig0033048:35883-35902 None:intergenic 50.0%
!! GATAAAGGGTGTTGTGGCAC+GGG + tig0033048:36872-36891 Msa1450780:CDS 50.0%
TTGTGGCACGGGCATAATTG+AGG + tig0033048:36883-36902 Msa1450780:CDS 50.0%
! CCGGCTTTAACCTTGAGGTG+AGG - tig0033048:33833-33852 None:intergenic 55.0%
!! GGCAATGAGGATGATGGGTG+GGG - tig0033048:34320-34339 None:intergenic 55.0%
GAGCTAGGTGCAAGGAGGAT+TGG + tig0033048:35360-35379 Msa1450780:intron 55.0%
Chromosome Type Strat End Strand Name
tig0033048 gene 32617 37000 32617 ID=Msa1450780;Name=Msa1450780
tig0033048 mRNA 32617 37000 32617 ID=Msa1450780-mRNA-1;Parent=Msa1450780;Name=Msa1450780-mRNA-1;_AED=0.23;_eAED=0.23;_QI=135|0.75|0.6|1|0.75|1|5|0|317
tig0033048 exon 32617 33037 32617 ID=Msa1450780-mRNA-1:exon:17638;Parent=Msa1450780-mRNA-1
tig0033048 exon 34495 34625 34495 ID=Msa1450780-mRNA-1:exon:17639;Parent=Msa1450780-mRNA-1
tig0033048 exon 34754 34960 34754 ID=Msa1450780-mRNA-1:exon:17640;Parent=Msa1450780-mRNA-1
tig0033048 exon 35423 35606 35423 ID=Msa1450780-mRNA-1:exon:17641;Parent=Msa1450780-mRNA-1
tig0033048 exon 36858 37000 36858 ID=Msa1450780-mRNA-1:exon:17642;Parent=Msa1450780-mRNA-1
tig0033048 five_prime_UTR 32617 32751 32617 ID=Msa1450780-mRNA-1:five_prime_utr;Parent=Msa1450780-mRNA-1
tig0033048 CDS 32752 33037 32752 ID=Msa1450780-mRNA-1:cds;Parent=Msa1450780-mRNA-1
tig0033048 CDS 34495 34625 34495 ID=Msa1450780-mRNA-1:cds;Parent=Msa1450780-mRNA-1
tig0033048 CDS 34754 34960 34754 ID=Msa1450780-mRNA-1:cds;Parent=Msa1450780-mRNA-1
tig0033048 CDS 35423 35606 35423 ID=Msa1450780-mRNA-1:cds;Parent=Msa1450780-mRNA-1
tig0033048 CDS 36858 37000 36858 ID=Msa1450780-mRNA-1:cds;Parent=Msa1450780-mRNA-1
Gene Sequence

>Msa1450780

ATGCTAGTATATATTATGGTTCCTTTAATGAATTCCCTTTCTTTTTTTCTCCATTTCATAATAATATTACTTGTTGCATGTAAAACAAAGGGTATAGTCCAACTTCCACCAAATGTTTCAGTTCCAGCAGTGTTGGTGTTTGGAGATTCTATCGTGGATACAGGTAACAATAACAACAATTTGAGAACAACAGCTCGTTGCAATTTTCCACCTTATGGGAAAGATTTCAAAGGAGGGATTCCAACAGGAAGATTTAGCAATGGAAAAGTTCCCTCAGACTTCATAGTTGAAGAATTAGGCATTAAAGAATTTCTACCAGCATACTTGGATCCAAATCTCCAGCCCAGTGATTTACCTACTGGTGTGTGTTTTGCATCTGGTGGTGCTGGATTTGATCCTTTGACATCTCAAACTGCGTCAGCAATATCATTATCTGGCCAACTAGATTTGTTCAAAGAATACATAGGAAAATTAAGAGGACTTGTTGGAGAAGACAGAACAAACTTCATCTTGGCAAATAGTCTTTTCCTTGTGGTATTGGGCAGTAATGATATTTCCAACACATATTTCTTGTCTCGCATTAGACAATTCCAGTATGATTTTCCTGATTATGCTGATCTTATGAGAACAGCTGCTGGAGGAATAGAAAGAAGAATTGTAGTTGAATACAATGAAGCAGTAGAATTATACAACAGCAAATTGTCAAAGGGGTTAGCTTCCTTTAACCAGAATTATCCAAACAGCAGGATTGTTTACATTGATGTCTATAACCCTCTGCTTGACATCATTGTAAACTCTAATAAATATGGATATAAAGTGGAAGATAAAGGGTGTTGTGGCACGGGCATAATTGAGGTTGTGTTGTTATGCAACCATTTGTCTTCTACGTGTCCAAATGATATGGAGTTTGTCTTTTGGGATAGTTTTCATCCAACTGAAAGTGTTTACAAA
Protein sequence

>Msa1450780

MLVYIMVPLMNSLSFFLHFIIILLVACKTKGIVQLPPNVSVPAVLVFGDSIVDTGNNNNNLRTTARCNFPPYGKDFKGGIPTGRFSNGKVPSDFIVEELGIKEFLPAYLDPNLQPSDLPTGVCFASGGAGFDPLTSQTASAISLSGQLDLFKEYIGKLRGLVGEDRTNFILANSLFLVVLGSNDISNTYFLSRIRQFQYDFPDYADLMRTAAGGIERRIVVEYNEAVELYNSKLSKGLASFNQNYPNSRIVYIDVYNPLLDIIVNSNKYGYKVEDKGCCGTGIIEVVLLCNHLSSTCPNDMEFVFWDSFHPTESVYK