AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1031530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031530 MtrunA17_Chr7g0253111 95.273 275 11 1 1 275 1 273 0.0 549
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031530 AT2G23840.1 78.453 181 38 1 93 273 99 278 4.37e-106 310

Find 80 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCATTTGTTTAGAGTTTA+TGG 0.065753 7_1:-66250416 Msa1031530:CDS
GTGATGGCTTGTCTGGTTTC+AGG 0.083001 7_1:-66250755 Msa1031530:CDS
TAAACAATGCTATTCAATAT+TGG 0.210448 7_1:-66243400 Msa1031530:three_prime_UTR
AAGAGTTCTGACCGCGAAAA+AGG 0.223811 7_1:-66243614 Msa1031530:CDS
GATGGCTCAGACCTTCTTAT+TGG 0.229923 7_1:-66243329 Msa1031530:three_prime_UTR
AAACAATGCTATTCAATATT+GGG 0.280143 7_1:-66243399 Msa1031530:three_prime_UTR
GTAACTTGTTCTTCTCTTGT+GGG 0.315212 7_1:+66250953 None:intergenic
CTTAGAGCTGCTGCTGTTAG+AGG 0.315554 7_1:+66243634 None:intergenic
TCTATATACCAGCTGTCTTA+AGG 0.324607 7_1:-66249989 Msa1031530:CDS
TCCTTTCTTTGAGTTGCATC+TGG 0.332427 7_1:+66243958 None:intergenic
TTTCTTCTTCTATCTATAAT+GGG 0.337882 7_1:-66251146 Msa1031530:five_prime_UTR
TTGTGTTGGATATATCTTAC+AGG 0.338812 7_1:-66250728 Msa1031530:intron
CGCTTGAAGCTTCTCTTCAA+TGG 0.357051 7_1:-66251005 Msa1031530:CDS
CTATATACCAGCTGTCTTAA+GGG 0.359416 7_1:-66249988 Msa1031530:intron
CTTAGAACCATGGGTTAGTC+TGG 0.376373 7_1:-66243555 Msa1031530:exon
TGATGGCTTGTCTGGTTTCA+GGG 0.383664 7_1:-66250754 Msa1031530:CDS
TGTAACTTGTTCTTCTCTTG+TGG 0.389234 7_1:+66250952 None:intergenic
TTCATCATGAACACCTTCAC+TGG 0.398644 7_1:+66250839 None:intergenic
CTGCCTAATGTATGTTATGA+TGG 0.406561 7_1:-66243347 Msa1031530:three_prime_UTR
ATTAACATTTCATCATCAAT+TGG 0.407496 7_1:+66243425 None:intergenic
GCAAGAATGTCATAGTCCTT+TGG 0.416406 7_1:+66243661 None:intergenic
TTCGATGGTGATGGCTTGTC+TGG 0.422059 7_1:-66250762 Msa1031530:CDS
CTCCATAAACTCTAAACAAA+TGG 0.426039 7_1:+66250414 None:intergenic
AAAGAGAATCATAGTGTGTC+TGG 0.429755 7_1:+66243504 None:intergenic
CATTGTCCACCCACTGCAGC+TGG 0.438963 7_1:+66246045 None:intergenic
AACACTTCCCTTTGCTTCTG+AGG 0.456712 7_1:+66250880 None:intergenic
GAAAGGACGAAAGTCCTTAG+AGG 0.463003 7_1:-66243942 Msa1031530:CDS
AGATACTGACGCCATTCATC+AGG 0.493348 7_1:+66243586 None:intergenic
TTATTGGTATGTAATAGTCT+TGG 0.494543 7_1:-66243313 Msa1031530:three_prime_UTR
TGGTTTCAGGGGTCTTGTGT+TGG 0.497610 7_1:-66250742 Msa1031530:CDS
GGCCAGTCAATGTTGTATGC+TGG 0.505235 7_1:-66250444 Msa1031530:CDS
TTTAAGACTAAATAACCAAA+GGG 0.509409 7_1:-66251053 Msa1031530:five_prime_UTR
TTCCAGCATACAACATTGAC+TGG 0.512985 7_1:+66250442 None:intergenic
GAGCCATCATAACATACATT+AGG 0.513459 7_1:+66243344 None:intergenic
CAAGTACAAAATATCTCTGT+AGG 0.517369 7_1:-66251105 Msa1031530:five_prime_UTR
TCACGTTGTGCCAGCTGCAG+TGG 0.517496 7_1:-66246055 Msa1031530:CDS
GTGAACTGTGCCATACCCTT+TGG 0.522077 7_1:+66251038 None:intergenic
TAAGTTCCTCTTAGAACCAT+GGG 0.522559 7_1:-66243564 Msa1031530:exon
AAAAGGGCACACCTGATGAA+TGG 0.523171 7_1:-66243597 Msa1031530:CDS
TTGTTTAGAGTTTATGGAGA+AGG 0.524127 7_1:-66250410 Msa1031530:intron
AGCTGCTGCTGTTAGAGGTA+TGG 0.524385 7_1:+66243639 None:intergenic
GATGGCTTGTCTGGTTTCAG+GGG 0.524722 7_1:-66250753 Msa1031530:CDS
TGGTATATAGAAAGATCCAC+TGG 0.525235 7_1:+66250001 None:intergenic
CTTCATACCTCAGAAGCAAA+GGG 0.531192 7_1:-66250887 Msa1031530:CDS
CAGTGGGTGGACAATGGACA+TGG 0.531472 7_1:-66246038 Msa1031530:CDS
GACTAACCCATGGTTCTAAG+AGG 0.532292 7_1:+66243558 None:intergenic
TCCAGATGCAACTCAAAGAA+AGG 0.539778 7_1:-66243959 Msa1031530:CDS
AGAAACTGTGTCATCTCTCA+TGG 0.541184 7_1:-66250982 Msa1031530:CDS
AGAACCATGGGTTAGTCTGG+TGG 0.542942 7_1:-66243552 Msa1031530:three_prime_UTR
TCTTCATACCTCAGAAGCAA+AGG 0.544774 7_1:-66250888 Msa1031530:CDS
CTAAGTTCCTCTTAGAACCA+TGG 0.545502 7_1:-66243565 Msa1031530:exon
GACTAAATAACCAAAGGGTA+TGG 0.548580 7_1:-66251048 Msa1031530:exon
ACTATTACATACCAATAAGA+AGG 0.550752 7_1:+66243318 None:intergenic
CACGTTGTGCCAGCTGCAGT+GGG 0.556043 7_1:-66246054 Msa1031530:CDS
GATGAGAGGGTTAAATTCTG+AGG 0.562388 7_1:+66243258 None:intergenic
TAGTCAAGAACAGTCTTAGT+CGG 0.564841 7_1:-66247689 Msa1031530:CDS
TGAATATGATTCTGTTGATG+AGG 0.582241 7_1:-66250802 Msa1031530:CDS
TGCAAACATAATAGATGAGA+GGG 0.585007 7_1:+66243245 None:intergenic
GGACATACCCTTAAGACAGC+TGG 0.586777 7_1:+66249981 None:intergenic
CTTACAATAACCTATTTGTG+AGG 0.588278 7_1:+66243453 None:intergenic
AGCTGGCACAACGTGATCGA+TGG 0.589820 7_1:+66246062 None:intergenic
GCTGAGGCACGTCCCAGTGA+AGG 0.590374 7_1:-66250852 Msa1031530:CDS
TCTTGTTATTCAGAAACCAA+AGG 0.601581 7_1:-66243677 Msa1031530:intron
ATGCAAACATAATAGATGAG+AGG 0.611965 7_1:+66243244 None:intergenic
CAGCTGCAGTGGGTGGACAA+TGG 0.613401 7_1:-66246044 Msa1031530:CDS
GAAGTTGATTAAGGTCCCAA+AGG 0.616973 7_1:-66243909 Msa1031530:intron
AAGAGAAGAACAAGTTACAA+AGG 0.622533 7_1:-66250948 Msa1031530:CDS
GTTGTGCCAGCTGCAGTGGG+TGG 0.629063 7_1:-66246051 Msa1031530:CDS
ATGGCACAGTTCACTGCACA+AGG 0.629424 7_1:-66251029 Msa1031530:CDS
GATGATGATGATGTATTCGA+TGG 0.630623 7_1:-66250777 Msa1031530:CDS
GATGATGTATTCGATGGTGA+TGG 0.632191 7_1:-66250771 Msa1031530:CDS
AGGGAAGTGTTGTAATGCTG+AGG 0.635804 7_1:-66250868 Msa1031530:CDS
GTGTGTCTGGCATCACACAC+AGG 0.637734 7_1:+66243517 None:intergenic
TCATCATGAACACCTTCACT+GGG 0.662574 7_1:+66250840 None:intergenic
GGTATATAGAAAGATCCACT+GGG 0.672250 7_1:+66250002 None:intergenic
TGAGGTATGAAGAAGATGCA+TGG 0.700753 7_1:+66250898 None:intergenic
AGTGGGTGGACAATGGACAT+GGG 0.715330 7_1:-66246037 Msa1031530:CDS
GCAACCACCAGACTAACCCA+TGG 0.719996 7_1:+66243548 None:intergenic
TATATAGAAAGATCCACTGG+GGG 0.730035 7_1:+66250004 None:intergenic
GTATATAGAAAGATCCACTG+GGG 0.764928 7_1:+66250003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTCTATTAGTTTTTTTT+TGG + chr7_1:66248092-66248111 None:intergenic 10.0%
!! AAAGCAAAAATTGAAATTTA+AGG + chr7_1:66243311-66243330 None:intergenic 15.0%
!! TTTATGAAATTATATAAGCT+TGG + chr7_1:66243853-66243872 None:intergenic 15.0%
!!! TGTATTTTGTTGTTATAAAA+TGG - chr7_1:66244620-66244639 Msa1031530:intron 15.0%
!! ACAATTATTAAACCATTAAA+TGG - chr7_1:66246274-66246293 Msa1031530:intron 15.0%
!! AATATAAATGTATAAGAACA+GGG + chr7_1:66246931-66246950 None:intergenic 15.0%
!! TAATATAAATGTATAAGAAC+AGG + chr7_1:66246932-66246951 None:intergenic 15.0%
!!! TTTTTTGTAATTATAGTATC+CGG - chr7_1:66247054-66247073 Msa1031530:intron 15.0%
!! AAAATCTTAAAGCATAAATT+CGG - chr7_1:66247335-66247354 Msa1031530:intron 15.0%
!! AAAAACTAATAGAATAAAAC+TGG - chr7_1:66248095-66248114 Msa1031530:intron 15.0%
!!! TTCATACTAAATTTTACAAA+AGG + chr7_1:66248538-66248557 None:intergenic 15.0%
!! TTAATTAGTTAAATAGATAC+TGG - chr7_1:66248779-66248798 Msa1031530:intron 15.0%
!! TAATTAGTTAAATAGATACT+GGG - chr7_1:66248780-66248799 Msa1031530:intron 15.0%
!! TATTGAATAATTTATGTATC+TGG + chr7_1:66249542-66249561 None:intergenic 15.0%
!!! CCTTTTATATTAAAAATGAA+TGG + chr7_1:66249635-66249654 None:intergenic 15.0%
!!! CCATTCATTTTTAATATAAA+AGG - chr7_1:66249632-66249651 Msa1031530:intron 15.0%
!! TAGTTATTAAATGGTAATTA+AGG + chr7_1:66250435-66250454 None:intergenic 15.0%
!!! TAATCTGTAATGATATTTTT+TGG - chr7_1:66250485-66250504 Msa1031530:intron 15.0%
!!! CTTTTAATGTAATTAAAACT+TGG + chr7_1:66250708-66250727 None:intergenic 15.0%
!! AAAGAAAAATATTTGTGTCA+CGG + chr7_1:66243267-66243286 None:intergenic 20.0%
!!! TTTTCTTCTTCTATCTATAA+TGG - chr7_1:66243337-66243356 Msa1031530:three_prime_UTR 20.0%
!! TTTCTTCTTCTATCTATAAT+GGG - chr7_1:66243338-66243357 Msa1031530:three_prime_UTR 20.0%
!!! TTTTAAGACTAAATAACCAA+AGG - chr7_1:66243430-66243449 Msa1031530:three_prime_UTR 20.0%
!!! TTTAAGACTAAATAACCAAA+GGG - chr7_1:66243431-66243450 Msa1031530:three_prime_UTR 20.0%
!!! AAACAAAATTGATAATGAGT+TGG - chr7_1:66243878-66243897 Msa1031530:intron 20.0%
!! ATAATTCGATACAAATGAAT+AGG + chr7_1:66244118-66244137 None:intergenic 20.0%
!!! ATTTCAGATTTTGTTTATAC+AGG - chr7_1:66244421-66244440 Msa1031530:intron 20.0%
!!! ATAAACCAAAAGTATTACTT+CGG + chr7_1:66244534-66244553 None:intergenic 20.0%
!! AAACATGTATACTATTTCAT+TGG - chr7_1:66244861-66244880 Msa1031530:intron 20.0%
!! AATTTATTCCATGATTTCTT+TGG - chr7_1:66245535-66245554 Msa1031530:intron 20.0%
!!! GCTTTTAAAATTCTACATAT+GGG + chr7_1:66245901-66245920 None:intergenic 20.0%
!!! TGCTTTTAAAATTCTACATA+TGG + chr7_1:66245902-66245921 None:intergenic 20.0%
!! ATGATATCTAAAAACAAGTT+CGG + chr7_1:66246230-66246249 None:intergenic 20.0%
!! GTTTAATAATTGTCATTCTT+GGG + chr7_1:66246267-66246286 None:intergenic 20.0%
!! ATTATTAAACCATTAAATGG+TGG - chr7_1:66246277-66246296 Msa1031530:intron 20.0%
!!! AGCTCAACATATATTTATTT+TGG - chr7_1:66246730-66246749 Msa1031530:intron 20.0%
!!! GAATTTATGCTTTAAGATTT+TGG + chr7_1:66247336-66247355 None:intergenic 20.0%
!!! TTTGGTAATTTTGAAAACTT+TGG + chr7_1:66248074-66248093 None:intergenic 20.0%
!! TAACAATGTAATATTGAGAA+GGG + chr7_1:66248199-66248218 None:intergenic 20.0%
!! ATAACAATGTAATATTGAGA+AGG + chr7_1:66248200-66248219 None:intergenic 20.0%
!! CAAAAAATATTCTAATGCAA+TGG - chr7_1:66248291-66248310 Msa1031530:intron 20.0%
!!! ATACTAAATTTTACAAAAGG+AGG + chr7_1:66248535-66248554 None:intergenic 20.0%
!! AGAAAATAATCAATTCTGTT+AGG - chr7_1:66248698-66248717 Msa1031530:intron 20.0%
!! AATTAGTTAAATAGATACTG+GGG - chr7_1:66248781-66248800 Msa1031530:intron 20.0%
!!! ATTTGATTAGTTGTTTTGAA+AGG - chr7_1:66248833-66248852 Msa1031530:intron 20.0%
!!! ATTTTCTATTTCAATTTCTC+CGG - chr7_1:66248931-66248950 Msa1031530:intron 20.0%
!! AAAATCATCAGGTTTAAAAA+TGG - chr7_1:66249088-66249107 Msa1031530:intron 20.0%
!! TTACTATTTGTTCTTGATTT+AGG + chr7_1:66249325-66249344 None:intergenic 20.0%
!!! TTAGATTATAAGTTGATCAT+AGG - chr7_1:66249389-66249408 Msa1031530:intron 20.0%
!!! GTTAATTGTTTCTTGTAAAA+AGG + chr7_1:66249473-66249492 None:intergenic 20.0%
!! CATTGAATAATTTATGTATG+TGG - chr7_1:66249503-66249522 Msa1031530:intron 20.0%
!!! GTCAATTGTTACTTATATAT+AGG - chr7_1:66249572-66249591 Msa1031530:intron 20.0%
!!! ATTTTTAATATAAAAGGACC+TGG - chr7_1:66249638-66249657 Msa1031530:intron 20.0%
!!! CTTCTTTTTCATAAAGTAAA+CGG - chr7_1:66250196-66250215 Msa1031530:intron 20.0%
!!! AAGAGAATATTTCTACTTTT+GGG + chr7_1:66250301-66250320 None:intergenic 20.0%
!!! TAAGAGAATATTTCTACTTT+TGG + chr7_1:66250302-66250321 None:intergenic 20.0%
!! ATTAAATGGTAATTAAGGTA+GGG + chr7_1:66250430-66250449 None:intergenic 20.0%
!! TATTAAATGGTAATTAAGGT+AGG + chr7_1:66250431-66250450 None:intergenic 20.0%
!!! ATTGCAGATTAGTTATTAAA+TGG + chr7_1:66250444-66250463 None:intergenic 20.0%
!! ATTAACATTTCATCATCAAT+TGG + chr7_1:66251062-66251081 None:intergenic 20.0%
!! TAAACAATGCTATTCAATAT+TGG - chr7_1:66251084-66251103 Msa1031530:five_prime_UTR 20.0%
!! AAACAATGCTATTCAATATT+GGG - chr7_1:66251085-66251104 Msa1031530:five_prime_UTR 20.0%
! ATGTATAGTTTAAAAAACCG+TGG - chr7_1:66244178-66244197 Msa1031530:intron 25.0%
!! ACAAAATCTGAAATCATAAC+TGG + chr7_1:66244415-66244434 None:intergenic 25.0%
!! ACTAGGAACCATTTTATATA+CGG + chr7_1:66244677-66244696 None:intergenic 25.0%
! TATACTATTTCATTGGTGAA+AGG - chr7_1:66244868-66244887 Msa1031530:intron 25.0%
!!! TTTTCTTTTGGTTATTGTGA+AGG - chr7_1:66245138-66245157 Msa1031530:intron 25.0%
! TATTGTGAAGGATAATTGAA+AGG - chr7_1:66245150-66245169 Msa1031530:intron 25.0%
!! TAAGTACTGTTAAGATTGTT+GGG - chr7_1:66245275-66245294 Msa1031530:intron 25.0%
! TTACTTTAGTAGGTTTACAT+GGG + chr7_1:66245815-66245834 None:intergenic 25.0%
! ATTACTTTAGTAGGTTTACA+TGG + chr7_1:66245816-66245835 None:intergenic 25.0%
!! ACTATATTATGTGCTATTGA+TGG - chr7_1:66246100-66246119 Msa1031530:intron 25.0%
! ATAACAACATAGTTCATTCA+TGG + chr7_1:66246144-66246163 None:intergenic 25.0%
! GGTTTAATAATTGTCATTCT+TGG + chr7_1:66246268-66246287 None:intergenic 25.0%
! TTAGTAAATCCACCATTTAA+TGG + chr7_1:66246289-66246308 None:intergenic 25.0%
!!! ACATATATTTATTTTGGTGC+AGG - chr7_1:66246736-66246755 Msa1031530:intron 25.0%
! ACTTCGATTTCAAATATATC+TGG - chr7_1:66246872-66246891 Msa1031530:intron 25.0%
! TTATATTAGATTCGATGAGA+CGG - chr7_1:66246944-66246963 Msa1031530:intron 25.0%
!! ATAAAGGATCTATGATTTTC+TGG + chr7_1:66247220-66247239 None:intergenic 25.0%
!!! TTGACTTTGTTGTTATGTAT+TGG - chr7_1:66247242-66247261 Msa1031530:intron 25.0%
!! AGTTTGACTGTTAATTGTTT+TGG + chr7_1:66247485-66247504 None:intergenic 25.0%
! AACATTAGAAACTACAACAA+TGG - chr7_1:66247684-66247703 Msa1031530:CDS 25.0%
! TACTCTATTTGATATTGTTC+AGG + chr7_1:66247847-66247866 None:intergenic 25.0%
!! ATTTTCATGAATGTCGTAAA+TGG + chr7_1:66247974-66247993 None:intergenic 25.0%
! TTTACGACATTCATGAAAAT+TGG - chr7_1:66247974-66247993 Msa1031530:intron 25.0%
! AACAATGTAATATTGAGAAG+GGG + chr7_1:66248198-66248217 None:intergenic 25.0%
!!! TCAGTTTTGTATCAAATGAA+AGG + chr7_1:66248636-66248655 None:intergenic 25.0%
! AGTAATTAGAAAACTTTGAG+CGG - chr7_1:66248738-66248757 Msa1031530:intron 25.0%
!! TTTTCTATTTCAATTTCTCC+GGG - chr7_1:66248932-66248951 Msa1031530:intron 25.0%
! GAAATAATTTGAAAGTAACC+CGG + chr7_1:66248953-66248972 None:intergenic 25.0%
! ATTGCAATACAGTTTAAACT+TGG + chr7_1:66249028-66249047 None:intergenic 25.0%
!! GTGAGATTTTAGATAAAAAG+AGG - chr7_1:66249195-66249214 Msa1031530:intron 25.0%
! CGTATCTTAGATTATTTCAT+AGG + chr7_1:66249368-66249387 None:intergenic 25.0%
! AATATAAGAAAATACTCCTC+TGG + chr7_1:66249599-66249618 None:intergenic 25.0%
! GATGACAAAATAAGAATGAA+AGG - chr7_1:66249677-66249696 Msa1031530:intron 25.0%
! AAAACTGGAAGAGAATTATA+AGG - chr7_1:66249752-66249771 Msa1031530:intron 25.0%
! AGAAATCAGTTAGAAAGTTA+AGG + chr7_1:66250224-66250243 None:intergenic 25.0%
!!! TGATTTCTAGTTTACCTTAA+TGG - chr7_1:66250236-66250255 Msa1031530:intron 25.0%
!!! GATTTCTAGTTTACCTTAAT+GGG - chr7_1:66250237-66250256 Msa1031530:intron 25.0%
!!! GTAATGATATTTTTTGGTAC+AGG - chr7_1:66250491-66250510 Msa1031530:intron 25.0%
!! AGCAAAAATGAAGTTGATTA+AGG - chr7_1:66250566-66250585 Msa1031530:intron 25.0%
! AAACTTGGAATTCTTAACAT+TGG + chr7_1:66250693-66250712 None:intergenic 25.0%
!!! TACCTATTTTAGCATATTCA+TGG - chr7_1:66250744-66250763 Msa1031530:CDS 25.0%
! AACCATGAATATGCTAAAAT+AGG + chr7_1:66250749-66250768 None:intergenic 25.0%
!!! GATTTTTCTCTTTGCTTTTT+CGG + chr7_1:66251012-66251031 None:intergenic 25.0%
! ACTATTACATACCAATAAGA+AGG + chr7_1:66251169-66251188 None:intergenic 25.0%
! TTATTGGTATGTAATAGTCT+TGG - chr7_1:66251171-66251190 Msa1031530:five_prime_UTR 25.0%
CAAGTACAAAATATCTCTGT+AGG - chr7_1:66243379-66243398 Msa1031530:three_prime_UTR 30.0%
AAGAGAAGAACAAGTTACAA+AGG - chr7_1:66243536-66243555 Msa1031530:three_prime_UTR 30.0%
TGAATATGATTCTGTTGATG+AGG - chr7_1:66243682-66243701 Msa1031530:intron 30.0%
TTGTGTTGGATATATCTTAC+AGG - chr7_1:66243756-66243775 Msa1031530:intron 30.0%
! TGCCATTTGTTTAGAGTTTA+TGG - chr7_1:66244068-66244087 Msa1031530:intron 30.0%
CTCCATAAACTCTAAACAAA+TGG + chr7_1:66244073-66244092 None:intergenic 30.0%
! TTGTTTAGAGTTTATGGAGA+AGG - chr7_1:66244074-66244093 Msa1031530:intron 30.0%
!! CTTCAACATTCTAAAATCAC+TGG - chr7_1:66244571-66244590 Msa1031530:intron 30.0%
ATTCTCTTTCACTTGTAACT+AGG + chr7_1:66244648-66244667 None:intergenic 30.0%
!! AAACTGTTGTTTCAGTAACT+AGG + chr7_1:66244694-66244713 None:intergenic 30.0%
ATGTTAGATTGTTAGTTCCT+AGG - chr7_1:66244959-66244978 Msa1031530:intron 30.0%
AGACATATTTGGATGAAGAA+GGG - chr7_1:66245178-66245197 Msa1031530:intron 30.0%
! CTAAGTACTGTTAAGATTGT+TGG - chr7_1:66245274-66245293 Msa1031530:intron 30.0%
!! TTCTGAAACTAGAATCTAGT+TGG - chr7_1:66245345-66245364 Msa1031530:intron 30.0%
AATGGATGTTGAATCAACTT+AGG + chr7_1:66245433-66245452 None:intergenic 30.0%
! TCAACATAAAGTACCATTGA+AGG - chr7_1:66245478-66245497 Msa1031530:intron 30.0%
TCTGTTAGAAAGATAAGAAG+TGG + chr7_1:66245716-66245735 None:intergenic 30.0%
AATCCATAAATCTATCTAGC+TGG + chr7_1:66245757-66245776 None:intergenic 30.0%
CCTACTAAAGTAATCAACTA+CGG - chr7_1:66245822-66245841 Msa1031530:intron 30.0%
ATACCAGTGATTATGAACTA+AGG - chr7_1:66245852-66245871 Msa1031530:intron 30.0%
TACCAGTGATTATGAACTAA+GGG - chr7_1:66245853-66245872 Msa1031530:intron 30.0%
AAATTCTACATATGGGTCTT+TGG + chr7_1:66245894-66245913 None:intergenic 30.0%
TCCATGTCTACTTATAGAAA+AGG - chr7_1:66245930-66245949 Msa1031530:intron 30.0%
CCATGTCTACTTATAGAAAA+GGG - chr7_1:66245931-66245950 Msa1031530:intron 30.0%
CATGTCTACTTATAGAAAAG+GGG - chr7_1:66245932-66245951 Msa1031530:intron 30.0%
ATGTCTACTTATAGAAAAGG+GGG - chr7_1:66245933-66245952 Msa1031530:intron 30.0%
GGAAGTTGTATTATCAATCT+TGG - chr7_1:66246001-66246020 Msa1031530:intron 30.0%
!! TTGTTATTTAAACTGCTCCA+CGG + chr7_1:66246040-66246059 None:intergenic 30.0%
AGCACATAATATAGTTTACG+TGG + chr7_1:66246095-66246114 None:intergenic 30.0%
! CTTTTGTAGTTATGAAAGCT+GGG - chr7_1:66246166-66246185 Msa1031530:intron 30.0%
TCATTCTTGGGCAAAATATA+TGG + chr7_1:66246255-66246274 None:intergenic 30.0%
! GAACTATCATGATTGTTTCT+TGG - chr7_1:66246414-66246433 Msa1031530:intron 30.0%
AAGAAGATATCAGTGAAAAG+AGG - chr7_1:66246500-66246519 Msa1031530:intron 30.0%
ATTAACCTTCTCATTCTTAC+TGG - chr7_1:66246533-66246552 Msa1031530:intron 30.0%
GTCAGGTATTATATACCTTA+GGG + chr7_1:66246584-66246603 None:intergenic 30.0%
GTTAGAAGTTAGTTCATTTC+TGG + chr7_1:66246606-66246625 None:intergenic 30.0%
ACTTGTAAACAGTAGTTAGA+GGG + chr7_1:66246628-66246647 None:intergenic 30.0%
GTTGTTTGTCTGCTTTAATA+CGG - chr7_1:66246704-66246723 Msa1031530:intron 30.0%
AGAATGAGTTCATCAAATTC+CGG + chr7_1:66247076-66247095 None:intergenic 30.0%
AACAACAAAGTCAAGCATAA+AGG + chr7_1:66247236-66247255 None:intergenic 30.0%
ATCGTCTGTCGTTATATTTA+TGG + chr7_1:66247523-66247542 None:intergenic 30.0%
TAAATATAACGACAGACGAT+AGG - chr7_1:66247523-66247542 Msa1031530:intron 30.0%
AGAAATGATATATTCGTGCT+AGG + chr7_1:66248134-66248153 None:intergenic 30.0%
TAGTTGAGAACTGTGTATAA+TGG - chr7_1:66248155-66248174 Msa1031530:intron 30.0%
TTCAATCTCTACTAACTCAA+TGG + chr7_1:66248336-66248355 None:intergenic 30.0%
AGAGCAATACCTGTTATATT+CGG + chr7_1:66248386-66248405 None:intergenic 30.0%
!! AATTACTTTTGCGTCATCTT+TGG + chr7_1:66248725-66248744 None:intergenic 30.0%
! AAGGAAATTGGTTTCTTAGA+TGG + chr7_1:66249116-66249135 None:intergenic 30.0%
TTTGATTGCGAAAAGGAAAT+TGG + chr7_1:66249128-66249147 None:intergenic 30.0%
TCAACAATAACTACAGTTCT+TGG + chr7_1:66249171-66249190 None:intergenic 30.0%
TCTATGAATCTCTCTAAGTA+GGG + chr7_1:66249296-66249315 None:intergenic 30.0%
ATATTATGAGATACTACCTC+CGG - chr7_1:66249446-66249465 Msa1031530:intron 30.0%
! TTGTTTCTTGTAAAAAGGAC+CGG + chr7_1:66249468-66249487 None:intergenic 30.0%
TTACTTATATATAGGACCAG+AGG - chr7_1:66249580-66249599 Msa1031530:intron 30.0%
!!! TTTTAACTTTCTGTCACCAA+TGG + chr7_1:66249736-66249755 None:intergenic 30.0%
ACTATTGAAGTGAATCATTG+TGG - chr7_1:66250000-66250019 Msa1031530:CDS 30.0%
! GAATCATTGTGTGCAAATTT+TGG + chr7_1:66250108-66250127 None:intergenic 30.0%
!! GTTAATTTTAAAAGCTCGCA+AGG + chr7_1:66250151-66250170 None:intergenic 30.0%
!! GTTAAGATGAAAGTACCTTT+GGG + chr7_1:66250593-66250612 None:intergenic 30.0%
!! TGTTAAGATGAAAGTACCTT+TGG + chr7_1:66250594-66250613 None:intergenic 30.0%
TATGATGCCTTAGCATAAAA+AGG - chr7_1:66250639-66250658 Msa1031530:intron 30.0%
! ATTGTTGCCTTTTTATGCTA+AGG + chr7_1:66250649-66250668 None:intergenic 30.0%
!! TCTTGTTATTCAGAAACCAA+AGG - chr7_1:66250807-66250826 Msa1031530:CDS 30.0%
AGAGAAAAATCCTCACAAAT+AGG - chr7_1:66251021-66251040 Msa1031530:CDS 30.0%
CTTACAATAACCTATTTGTG+AGG + chr7_1:66251034-66251053 None:intergenic 30.0%
GACTAAATAACCAAAGGGTA+TGG - chr7_1:66243436-66243455 Msa1031530:three_prime_UTR 35.0%
!! GTAACTTGTTCTTCTCTTGT+GGG + chr7_1:66243534-66243553 None:intergenic 35.0%
!! TGTAACTTGTTCTTCTCTTG+TGG + chr7_1:66243535-66243554 None:intergenic 35.0%
! GATGATGATGATGTATTCGA+TGG - chr7_1:66243707-66243726 Msa1031530:intron 35.0%
TCAGCAGAAGTCTTGAATAT+TGG + chr7_1:66243980-66243999 None:intergenic 35.0%
CTCAGCTTAATGAAACTAAC+AGG + chr7_1:66244277-66244296 None:intergenic 35.0%
TATATAGAAAGATCCACTGG+GGG + chr7_1:66244483-66244502 None:intergenic 35.0%
GTATATAGAAAGATCCACTG+GGG + chr7_1:66244484-66244503 None:intergenic 35.0%
GGTATATAGAAAGATCCACT+GGG + chr7_1:66244485-66244504 None:intergenic 35.0%
TGGTATATAGAAAGATCCAC+TGG + chr7_1:66244486-66244505 None:intergenic 35.0%
TCTATATACCAGCTGTCTTA+AGG - chr7_1:66244495-66244514 Msa1031530:intron 35.0%
CTATATACCAGCTGTCTTAA+GGG - chr7_1:66244496-66244515 Msa1031530:intron 35.0%
!! AAAAGTATTACTTCGGAGTG+TGG + chr7_1:66244527-66244546 None:intergenic 35.0%
! ACACTCCGAAGTAATACTTT+TGG - chr7_1:66244526-66244545 Msa1031530:intron 35.0%
ATGACTCGCCGTATATAAAA+TGG - chr7_1:66244666-66244685 Msa1031530:intron 35.0%
GCATATACACAGTTGTTAGA+GGG + chr7_1:66244785-66244804 None:intergenic 35.0%
CTCTAACAACTGTGTATATG+CGG - chr7_1:66244784-66244803 Msa1031530:intron 35.0%
TTTCATTGGTGAAAGGTAGA+AGG - chr7_1:66244875-66244894 Msa1031530:intron 35.0%
TTCATTGGTGAAAGGTAGAA+GGG - chr7_1:66244876-66244895 Msa1031530:intron 35.0%
GTCTATCCATAGAAAAACTC+TGG + chr7_1:66244916-66244935 None:intergenic 35.0%
TAGGATAAGCTGATTAGATG+AGG - chr7_1:66245081-66245100 Msa1031530:intron 35.0%
GAGACATATTTGGATGAAGA+AGG - chr7_1:66245177-66245196 Msa1031530:intron 35.0%
GACATATTTGGATGAAGAAG+GGG - chr7_1:66245179-66245198 Msa1031530:intron 35.0%
TGAAACTAGAATCTAGTTGG+TGG - chr7_1:66245348-66245367 Msa1031530:intron 35.0%
TTAGGTGAACACAAAGTCTT+TGG + chr7_1:66245415-66245434 None:intergenic 35.0%
TGATGATAAAAGACCATACG+AGG + chr7_1:66245461-66245480 None:intergenic 35.0%
CAAGCTTACCAAAGAAATCA+TGG + chr7_1:66245546-66245565 None:intergenic 35.0%
TCAACAAAATGTTAGGTGAG+GGG + chr7_1:66245615-66245634 None:intergenic 35.0%
GTCAACAAAATGTTAGGTGA+GGG + chr7_1:66245616-66245635 None:intergenic 35.0%
AGACTCGTCAACAAAATGTT+AGG + chr7_1:66245622-66245641 None:intergenic 35.0%
CTCTTTCAAAGCTTTCAAAG+GGG + chr7_1:66245669-66245688 None:intergenic 35.0%
CCTCTTTCAAAGCTTTCAAA+GGG + chr7_1:66245670-66245689 None:intergenic 35.0%
!! CCTTTGAAAGCTTTGAAAGA+GGG - chr7_1:66245668-66245687 Msa1031530:intron 35.0%
AGAAAGATAAGAAGTGGTCA+TGG + chr7_1:66245710-66245729 None:intergenic 35.0%
CAACCAGCTAGATAGATTTA+TGG - chr7_1:66245751-66245770 Msa1031530:intron 35.0%
CCGTAGTTGATTACTTTAGT+AGG + chr7_1:66245825-66245844 None:intergenic 35.0%
TGAACTAAGGGCAGTAAAAA+TGG - chr7_1:66245865-66245884 Msa1031530:intron 35.0%
! CCCTTTTCTATAAGTAGACA+TGG + chr7_1:66245934-66245953 None:intergenic 35.0%
TACTTATAGAAAAGGGGGTT+GGG - chr7_1:66245938-66245957 Msa1031530:intron 35.0%
! TGTTATTTAAACTGCTCCAC+GGG + chr7_1:66246039-66246058 None:intergenic 35.0%
CCAGCTTTCATAACTACAAA+AGG + chr7_1:66246168-66246187 None:intergenic 35.0%
! CCTTTTGTAGTTATGAAAGC+TGG - chr7_1:66246165-66246184 Msa1031530:intron 35.0%
CTAAAAACAAGTTCGGTTCA+TGG + chr7_1:66246223-66246242 None:intergenic 35.0%
TCTCCAGGATGAACATAATA+CGG - chr7_1:66246325-66246344 Msa1031530:intron 35.0%
GTTTCTTGGCATTATGAGAA+TGG - chr7_1:66246428-66246447 Msa1031530:intron 35.0%
TTCTGCTTTGCTAACTAAGA+TGG + chr7_1:66246482-66246501 None:intergenic 35.0%
TTGTTCCAGTAAGAATGAGA+AGG + chr7_1:66246541-66246560 None:intergenic 35.0%
TCTCATTCTTACTGGAACAA+TGG - chr7_1:66246541-66246560 Msa1031530:intron 35.0%
GGTCAGGTATTATATACCTT+AGG + chr7_1:66246585-66246604 None:intergenic 35.0%
!! AAGTTAGTTCATTTCTGGTC+AGG + chr7_1:66246601-66246620 None:intergenic 35.0%
CACTTGTAAACAGTAGTTAG+AGG + chr7_1:66246629-66246648 None:intergenic 35.0%
CTCTAACTACTGTTTACAAG+TGG - chr7_1:66246627-66246646 Msa1031530:intron 35.0%
TAGTCAAGAACAGTCTTAGT+CGG - chr7_1:66246795-66246814 Msa1031530:intron 35.0%
! ATATTAGAGCACTTACTGAC+AGG + chr7_1:66246849-66246868 None:intergenic 35.0%
TCAATGAGTGAGAACAATAG+TGG + chr7_1:66247100-66247119 None:intergenic 35.0%
! TTAGCCTACTTTGCCTTTTA+GGG + chr7_1:66247190-66247209 None:intergenic 35.0%
! TTTAGCCTACTTTGCCTTTT+AGG + chr7_1:66247191-66247210 None:intergenic 35.0%
! AGACGATAGGAAAGTACAAT+GGG - chr7_1:66247536-66247555 Msa1031530:intron 35.0%
CAAATTGTGTCGTGATTAGT+TGG + chr7_1:66247591-66247610 None:intergenic 35.0%
! GTACAATGAAGTATCTTCGA+AGG - chr7_1:66247714-66247733 Msa1031530:CDS 35.0%
!! AGTTGACTTTTTGTTCGTGT+GGG + chr7_1:66247787-66247806 None:intergenic 35.0%
GCAACATTCATTATTCTTCG+AGG - chr7_1:66247807-66247826 Msa1031530:intron 35.0%
ATGATATATTCGTGCTAGGT+AGG + chr7_1:66248130-66248149 None:intergenic 35.0%
GATTACCTTCCGAATATAAC+AGG - chr7_1:66248374-66248393 Msa1031530:intron 35.0%
CAATACCTGTTATATTCGGA+AGG + chr7_1:66248382-66248401 None:intergenic 35.0%
CACATGATAAAACAGCTAGA+CGG + chr7_1:66248602-66248621 None:intergenic 35.0%
AAACTGATACAGTTTCAGCT+TGG - chr7_1:66248649-66248668 Msa1031530:intron 35.0%
TAAATAGATACTGGGGAACA+TGG - chr7_1:66248788-66248807 Msa1031530:intron 35.0%
AAATAGATACTGGGGAACAT+GGG - chr7_1:66248789-66248808 Msa1031530:intron 35.0%
! TTATTTCTTGAGCTGTTGTG+TGG - chr7_1:66248966-66248985 Msa1031530:intron 35.0%
! AACATTTTCAGCAACCCAAT+AGG + chr7_1:66248992-66249011 None:intergenic 35.0%
AGTCGAACATCAAAATCATC+AGG - chr7_1:66249077-66249096 Msa1031530:intron 35.0%
GTCTATGAATCTCTCTAAGT+AGG + chr7_1:66249297-66249316 None:intergenic 35.0%
CTTAGAGAGATTCATAGACT+CGG - chr7_1:66249298-66249317 Msa1031530:intron 35.0%
! ACCTGGTTCAAGTTATTAGT+GGG - chr7_1:66249655-66249674 Msa1031530:intron 35.0%
TGGAATTGAACATCAACCAT+TGG - chr7_1:66249717-66249736 Msa1031530:intron 35.0%
TGGTGACAGAAAGTTAAAAC+TGG - chr7_1:66249737-66249756 Msa1031530:intron 35.0%
TTGCTAGTGAGATGAGAAAT+AGG - chr7_1:66249791-66249810 Msa1031530:intron 35.0%
CAAGTTAATGAGTCAAAAGC+AGG + chr7_1:66250394-66250413 None:intergenic 35.0%
ATGGTAATTAAGGTAGGGAA+AGG + chr7_1:66250425-66250444 None:intergenic 35.0%
!! CTTCATTTTTGCTTCCTCTA+AGG + chr7_1:66250559-66250578 None:intergenic 35.0%
AACAATATAGCTACCAAGGA+AGG - chr7_1:66250663-66250682 Msa1031530:intron 35.0%
ACAATATAGCTACCAAGGAA+GGG - chr7_1:66250664-66250683 Msa1031530:intron 35.0%
TAAGTTCCTCTTAGAACCAT+GGG - chr7_1:66250920-66250939 Msa1031530:CDS 35.0%
AAAGAGAATCATAGTGTGTC+TGG + chr7_1:66250983-66251002 None:intergenic 35.0%
CTGCCTAATGTATGTTATGA+TGG - chr7_1:66251137-66251156 Msa1031530:five_prime_UTR 35.0%
GAGCCATCATAACATACATT+AGG + chr7_1:66251143-66251162 None:intergenic 35.0%
AGAAACTGTGTCATCTCTCA+TGG - chr7_1:66243502-66243521 Msa1031530:three_prime_UTR 40.0%
TGAGGTATGAAGAAGATGCA+TGG + chr7_1:66243589-66243608 None:intergenic 40.0%
TCTTCATACCTCAGAAGCAA+AGG - chr7_1:66243596-66243615 Msa1031530:CDS 40.0%
CTTCATACCTCAGAAGCAAA+GGG - chr7_1:66243597-66243616 Msa1031530:CDS 40.0%
TCATCATGAACACCTTCACT+GGG + chr7_1:66243647-66243666 None:intergenic 40.0%
TTCATCATGAACACCTTCAC+TGG + chr7_1:66243648-66243667 None:intergenic 40.0%
GATGATGTATTCGATGGTGA+TGG - chr7_1:66243713-66243732 Msa1031530:intron 40.0%
TCTGCTGAGTTGTTTGCTTA+TGG - chr7_1:66243992-66244011 Msa1031530:intron 40.0%
TTCCAGCATACAACATTGAC+TGG + chr7_1:66244045-66244064 None:intergenic 40.0%
TCTCTTAGCTAGTATCACCA+CGG + chr7_1:66244198-66244217 None:intergenic 40.0%
TTAAGCTGAGCTTATTTCCC+AGG - chr7_1:66244287-66244306 Msa1031530:intron 40.0%
TATATACCTGACAGTACTGC+AGG - chr7_1:66244724-66244743 Msa1031530:intron 40.0%
ATATACCTGACAGTACTGCA+GGG - chr7_1:66244725-66244744 Msa1031530:intron 40.0%
ATACACAGTTGTTAGAGGGT+TGG + chr7_1:66244781-66244800 None:intergenic 40.0%
CGCATATACACAGTTGTTAG+AGG + chr7_1:66244786-66244805 None:intergenic 40.0%
TGTGTATATGCGGAACTATC+TGG - chr7_1:66244794-66244813 Msa1031530:intron 40.0%
ATCTGGTAATAACCCTTGCA+TGG - chr7_1:66244811-66244830 Msa1031530:intron 40.0%
TCATTGGTGAAAGGTAGAAG+GGG - chr7_1:66244877-66244896 Msa1031530:intron 40.0%
AGTACTAACCAAGAGGTCTA+AGG + chr7_1:66244991-66245010 None:intergenic 40.0%
!! TAGAAGGAGTACTAACCAAG+AGG + chr7_1:66244998-66245017 None:intergenic 40.0%
! ACCAATTGAGTTGTCTGCTT+GGG - chr7_1:66245031-66245050 Msa1031530:intron 40.0%
AGTTGCAGCAATAATCCACA+AGG - chr7_1:66245107-66245126 Msa1031530:intron 40.0%
! AAGGCGAGAAGGTTTTCTTT+TGG - chr7_1:66245126-66245145 Msa1031530:intron 40.0%
!! GAAAGGTGTCGAGACATATT+TGG - chr7_1:66245167-66245186 Msa1031530:intron 40.0%
AAGAAGGGGAACTAGATGTT+TGG - chr7_1:66245193-66245212 Msa1031530:intron 40.0%
! GATTAGTCGAGTTCCTTCAA+TGG + chr7_1:66245494-66245513 None:intergenic 40.0%
AAGCCACATTCAATATGTGC+TGG - chr7_1:66245584-66245603 Msa1031530:intron 40.0%
ACACCAGCACATATTGAATG+TGG + chr7_1:66245590-66245609 None:intergenic 40.0%
CGTCAACAAAATGTTAGGTG+AGG + chr7_1:66245617-66245636 None:intergenic 40.0%
TTCAAAGGGGTCTACCATTA+AGG + chr7_1:66245656-66245675 None:intergenic 40.0%
!! CCCTTTGAAAGCTTTGAAAG+AGG - chr7_1:66245667-66245686 Msa1031530:intron 40.0%
CCCTCTTTCAAAGCTTTCAA+AGG + chr7_1:66245671-66245690 None:intergenic 40.0%
CTTTAGTAGGTTTACATGGG+TGG + chr7_1:66245812-66245831 None:intergenic 40.0%
TGCCCTTAGTTCATAATCAC+TGG + chr7_1:66245858-66245877 None:intergenic 40.0%
CTACTTATAGAAAAGGGGGT+TGG - chr7_1:66245937-66245956 Msa1031530:intron 40.0%
!! TGAGAGTACTAGATTGCAAG+AGG - chr7_1:66245980-66245999 Msa1031530:intron 40.0%
AAACAAGTTCGGTTCATGGA+TGG + chr7_1:66246219-66246238 None:intergenic 40.0%
CTCCAGGATGAACATAATAC+GGG - chr7_1:66246326-66246345 Msa1031530:intron 40.0%
ATCCCGTATTATGTTCATCC+TGG + chr7_1:66246331-66246350 None:intergenic 40.0%
!! GGGATCTCTGTATTTTGAGA+GGG - chr7_1:66246346-66246365 Msa1031530:intron 40.0%
!! GGATCTCTGTATTTTGAGAG+GGG - chr7_1:66246347-66246366 Msa1031530:intron 40.0%
!! GATCTCTGTATTTTGAGAGG+GGG - chr7_1:66246348-66246367 Msa1031530:intron 40.0%
CTGCACACATATATACCCTA+AGG - chr7_1:66246566-66246585 Msa1031530:intron 40.0%
ATGATTTCTGAGCAAGGAAC+TGG + chr7_1:66247142-66247161 None:intergenic 40.0%
GTTCCTTGCTCAGAAATCAT+AGG - chr7_1:66247142-66247161 Msa1031530:intron 40.0%
GTTTACAACACACCCCTAAA+AGG - chr7_1:66247174-66247193 Msa1031530:intron 40.0%
! TAGCCTACTTTGCCTTTTAG+GGG + chr7_1:66247189-66247208 None:intergenic 40.0%
! CAGACGATAGGAAAGTACAA+TGG - chr7_1:66247535-66247554 Msa1031530:intron 40.0%
! GACGATAGGAAAGTACAATG+GGG - chr7_1:66247537-66247556 Msa1031530:intron 40.0%
! AGGAAAGTACAATGGGGTTA+CGG - chr7_1:66247543-66247562 Msa1031530:intron 40.0%
TGACTGAGAGTTCTTTACAC+TGG + chr7_1:66247747-66247766 None:intergenic 40.0%
AACTCTCAGTCACATTCATC+CGG - chr7_1:66247755-66247774 Msa1031530:intron 40.0%
!! GTTGACTTTTTGTTCGTGTG+GGG + chr7_1:66247786-66247805 None:intergenic 40.0%
!! CAGTTGACTTTTTGTTCGTG+TGG + chr7_1:66247788-66247807 None:intergenic 40.0%
GGTAATCTCTTGTCAATGCA+AGG + chr7_1:66248361-66248380 None:intergenic 40.0%
AATAGATACTGGGGAACATG+GGG - chr7_1:66248790-66248809 Msa1031530:intron 40.0%
!! TTGTGGCTTTGATTGCGAAA+AGG + chr7_1:66249135-66249154 None:intergenic 40.0%
GAATCTCTCTAAGTAGGGAT+TGG + chr7_1:66249291-66249310 None:intergenic 40.0%
TTTCTTGTAAAAAGGACCGG+AGG + chr7_1:66249465-66249484 None:intergenic 40.0%
! GACCTGGTTCAAGTTATTAG+TGG - chr7_1:66249654-66249673 Msa1031530:intron 40.0%
TCCCACTAATAACTTGAACC+AGG + chr7_1:66249659-66249678 None:intergenic 40.0%
AGGACATGATACATCATCGA+TGG - chr7_1:66249697-66249716 Msa1031530:intron 40.0%
CTAGAGATGTGATGCATTTC+TGG - chr7_1:66250045-66250064 Msa1031530:intron 40.0%
CAAGTTAGCATGACCCATTA+AGG + chr7_1:66250253-66250272 None:intergenic 40.0%
TTGCTTGATATGTGCCCTTA+GGG + chr7_1:66250278-66250297 None:intergenic 40.0%
ATTAAGGTAGGGAAAGGCTA+AGG + chr7_1:66250419-66250438 None:intergenic 40.0%
TCCAGATGCAACTCAAAGAA+AGG - chr7_1:66250525-66250544 Msa1031530:intron 40.0%
!! TCCTTTCTTTGAGTTGCATC+TGG + chr7_1:66250529-66250548 None:intergenic 40.0%
! GAAGTTGATTAAGGTCCCAA+AGG - chr7_1:66250575-66250594 Msa1031530:intron 40.0%
AGGCAACAATATAGCTACCA+AGG - chr7_1:66250659-66250678 Msa1031530:intron 40.0%
GCAAGAATGTCATAGTCCTT+TGG + chr7_1:66250826-66250845 None:intergenic 40.0%
CTAAGTTCCTCTTAGAACCA+TGG - chr7_1:66250919-66250938 Msa1031530:CDS 40.0%
GATGAGAGGGTTAAATTCTG+AGG + chr7_1:66251229-66251248 None:intergenic 40.0%
CGCTTGAAGCTTCTCTTCAA+TGG - chr7_1:66243479-66243498 Msa1031530:three_prime_UTR 45.0%
AACACTTCCCTTTGCTTCTG+AGG + chr7_1:66243607-66243626 None:intergenic 45.0%
!! AGGGAAGTGTTGTAATGCTG+AGG - chr7_1:66243616-66243635 Msa1031530:CDS 45.0%
! TGATGGCTTGTCTGGTTTCA+GGG - chr7_1:66243730-66243749 Msa1031530:intron 45.0%
TGGTAATAACCCTTGCATGG+TGG - chr7_1:66244814-66244833 Msa1031530:intron 45.0%
!! CTCACTTTTCCACCATGCAA+GGG + chr7_1:66244826-66244845 None:intergenic 45.0%
! ACGAGGCCAGAGTTTTTCTA+TGG - chr7_1:66244907-66244926 Msa1031530:intron 45.0%
! GAGGTCTAAGGTTCAAACCT+AGG + chr7_1:66244979-66244998 None:intergenic 45.0%
GGTTTGAACCTTAGACCTCT+TGG - chr7_1:66244980-66244999 Msa1031530:intron 45.0%
CAACTCAATTGGTGAGCTGA+GGG + chr7_1:66245024-66245043 None:intergenic 45.0%
ACAACTCAATTGGTGAGCTG+AGG + chr7_1:66245025-66245044 None:intergenic 45.0%
! CACCAATTGAGTTGTCTGCT+TGG - chr7_1:66245030-66245049 Msa1031530:intron 45.0%
TCCCAAGCAGACAACTCAAT+TGG + chr7_1:66245035-66245054 None:intergenic 45.0%
ATCTCTGCTTCATCTCACTC+TGG + chr7_1:66245062-66245081 None:intergenic 45.0%
GAGTGAGATGAAGCAGAGAT+AGG - chr7_1:66245062-66245081 Msa1031530:intron 45.0%
CAATAATCCACAAGGCGAGA+AGG - chr7_1:66245115-66245134 Msa1031530:intron 45.0%
AAGAAAACCTTCTCGCCTTG+TGG + chr7_1:66245125-66245144 None:intergenic 45.0%
!! GTTTGGTCTGGTTCTGATGT+AGG - chr7_1:66245210-66245229 Msa1031530:intron 45.0%
!! TCTGGTTCTGATGTAGGCAA+GGG - chr7_1:66245216-66245235 Msa1031530:intron 45.0%
CATCCATTGAGAACCTCGTA+TGG - chr7_1:66245445-66245464 Msa1031530:intron 45.0%
AGACCATACGAGGTTCTCAA+TGG + chr7_1:66245451-66245470 None:intergenic 45.0%
TCTCCACACAGCTACCTTAA+TGG - chr7_1:66245639-66245658 Msa1031530:intron 45.0%
CTACCATTAAGGTAGCTGTG+TGG + chr7_1:66245645-66245664 None:intergenic 45.0%
AAAGAGGGCAAAGCACACAA+TGG - chr7_1:66245683-66245702 Msa1031530:intron 45.0%
! GGTTGGGTTCTCTTTTGTGA+AGG - chr7_1:66245954-66245973 Msa1031530:intron 45.0%
TTGGAATCAGATACATCCCG+TGG - chr7_1:66246020-66246039 Msa1031530:intron 45.0%
TGAAAGCTGGGATCAAAGCA+AGG - chr7_1:66246178-66246197 Msa1031530:intron 45.0%
ACAACCATTAGACTCTCTCC+AGG - chr7_1:66246310-66246329 Msa1031530:intron 45.0%
TCATCCTGGAGAGAGTCTAA+TGG + chr7_1:66246317-66246336 None:intergenic 45.0%
!! CGGGATCTCTGTATTTTGAG+AGG - chr7_1:66246345-66246364 Msa1031530:intron 45.0%
TGTTTACAAGTGGCACGATG+TGG - chr7_1:66246637-66246656 Msa1031530:intron 45.0%
GTTTACAAGTGGCACGATGT+GGG - chr7_1:66246638-66246657 Msa1031530:intron 45.0%
CAGGGCTATGTTTAGTTGAG+TGG + chr7_1:66246913-66246932 None:intergenic 45.0%
GTGCCTATGATTTCTGAGCA+AGG + chr7_1:66247148-66247167 None:intergenic 45.0%
ACACCCCTAAAAGGCAAAGT+AGG - chr7_1:66247183-66247202 Msa1031530:intron 45.0%
TTAGTCCGTAACTGTCACAC+CGG + chr7_1:66247309-66247328 None:intergenic 45.0%
CGACAACGAATGTGCAACAA+TGG - chr7_1:66247371-66247390 Msa1031530:intron 45.0%
! ATGGTATCTGTGCTGGTAGT+TGG + chr7_1:66247955-66247974 None:intergenic 45.0%
GTCGTAAATGGTATCTGTGC+TGG + chr7_1:66247962-66247981 None:intergenic 45.0%
ATAGATACTGGGGAACATGG+GGG - chr7_1:66248791-66248810 Msa1031530:intron 45.0%
! TCATGCTAACTTGTGCCCTA+AGG - chr7_1:66250260-66250279 Msa1031530:intron 45.0%
! CATGCTAACTTGTGCCCTAA+GGG - chr7_1:66250261-66250280 Msa1031530:intron 45.0%
GTTGCTTGATATGTGCCCTT+AGG + chr7_1:66250279-66250298 None:intergenic 45.0%
GAAAGGACGAAAGTCCTTAG+AGG - chr7_1:66250542-66250561 Msa1031530:intron 45.0%
TAACATTGGCAACCCTTCCT+TGG + chr7_1:66250679-66250698 None:intergenic 45.0%
! AAGAGTTCTGACCGCGAAAA+AGG - chr7_1:66250870-66250889 Msa1031530:CDS 45.0%
! AGAGTTCTGACCGCGAAAAA+GGG - chr7_1:66250871-66250890 Msa1031530:CDS 45.0%
! AAAAGGGCACACCTGATGAA+TGG - chr7_1:66250887-66250906 Msa1031530:CDS 45.0%
AGATACTGACGCCATTCATC+AGG + chr7_1:66250901-66250920 None:intergenic 45.0%
!! GACTAACCCATGGTTCTAAG+AGG + chr7_1:66250929-66250948 None:intergenic 45.0%
!! CTTAGAACCATGGGTTAGTC+TGG - chr7_1:66250929-66250948 Msa1031530:CDS 45.0%
GATGGCTCAGACCTTCTTAT+TGG - chr7_1:66251155-66251174 Msa1031530:five_prime_UTR 45.0%
GTGAACTGTGCCATACCCTT+TGG + chr7_1:66243449-66243468 None:intergenic 50.0%
ATGGCACAGTTCACTGCACA+AGG - chr7_1:66243455-66243474 Msa1031530:three_prime_UTR 50.0%
!! TTCGATGGTGATGGCTTGTC+TGG - chr7_1:66243722-66243741 Msa1031530:intron 50.0%
! GTGATGGCTTGTCTGGTTTC+AGG - chr7_1:66243729-66243748 Msa1031530:intron 50.0%
! GATGGCTTGTCTGGTTTCAG+GGG - chr7_1:66243731-66243750 Msa1031530:intron 50.0%
! TGGTTTCAGGGGTCTTGTGT+TGG - chr7_1:66243742-66243761 Msa1031530:intron 50.0%
GACTGCTATCATCATGCTCC+AGG - chr7_1:66244019-66244038 Msa1031530:intron 50.0%
! GCATACAACATTGACTGGCC+TGG + chr7_1:66244040-66244059 None:intergenic 50.0%
GGCCAGTCAATGTTGTATGC+TGG - chr7_1:66244040-66244059 Msa1031530:intron 50.0%
GGACATACCCTTAAGACAGC+TGG + chr7_1:66244506-66244525 None:intergenic 50.0%
!! CCTCACTTTTCCACCATGCA+AGG + chr7_1:66244827-66244846 None:intergenic 50.0%
! CCTTGCATGGTGGAAAAGTG+AGG - chr7_1:66244824-66244843 Msa1031530:intron 50.0%
! TTGAGTTGTCTGCTTGGGAC+AGG - chr7_1:66245036-66245055 Msa1031530:intron 50.0%
GGGGAACTAGATGTTTGGTC+TGG - chr7_1:66245198-66245217 Msa1031530:intron 50.0%
!! GTCTGGTTCTGATGTAGGCA+AGG - chr7_1:66245215-66245234 Msa1031530:intron 50.0%
TGATGTAGGCAAGGGTGGAA+TGG - chr7_1:66245224-66245243 Msa1031530:intron 50.0%
GGTGGAATGGTTGAGAGGTA+TGG - chr7_1:66245237-66245256 Msa1031530:intron 50.0%
GGAACGTAGTTACGTGCGAA+GGG + chr7_1:66245394-66245413 None:intergenic 50.0%
TGGAACGTAGTTACGTGCGA+AGG + chr7_1:66245395-66245414 None:intergenic 50.0%
!! CTCAAAGGGTGTTCGAAGCA+CGG + chr7_1:66245784-66245803 None:intergenic 50.0%
! CATGGGTGGTAGTGCTCAAA+GGG + chr7_1:66245798-66245817 None:intergenic 50.0%
! ACATGGGTGGTAGTGCTCAA+AGG + chr7_1:66245799-66245818 None:intergenic 50.0%
TGGAGAACGCTGTCGAAGTT+TGG + chr7_1:66246075-66246094 None:intergenic 50.0%
AAGCTGGGATCAAAGCAAGG+TGG - chr7_1:66246181-66246200 Msa1031530:intron 50.0%
AGAGGGGGATCAAACAAAGC+TGG - chr7_1:66246363-66246382 Msa1031530:intron 50.0%
CTGAACCGGTGTGACAGTTA+CGG - chr7_1:66247301-66247320 Msa1031530:intron 50.0%
TGTGCAACAATGGCGCATTG+TGG - chr7_1:66247381-66247400 Msa1031530:intron 50.0%
TTGTTCGTGTGGGGTTGTAC+CGG + chr7_1:66247777-66247796 None:intergenic 50.0%
AGTGGGTGGACAATGGACAT+GGG - chr7_1:66248447-66248466 Msa1031530:intron 50.0%
TAGATACTGGGGAACATGGG+GGG - chr7_1:66248792-66248811 Msa1031530:intron 50.0%
TGAGCTGTTGTGTGGCCTAT+TGG - chr7_1:66248974-66248993 Msa1031530:intron 50.0%
GAGCTGTTGTGTGGCCTATT+GGG - chr7_1:66248975-66248994 Msa1031530:intron 50.0%
CGCAATCAAAGCCACAAGCA+TGG - chr7_1:66249138-66249157 Msa1031530:intron 50.0%
AGCTGCTGCTGTTAGAGGTA+TGG + chr7_1:66250848-66250867 None:intergenic 50.0%
CTTAGAGCTGCTGCTGTTAG+AGG + chr7_1:66250853-66250872 None:intergenic 50.0%
!! ATCAGGTGTGCCCTTTTTCG+CGG + chr7_1:66250884-66250903 None:intergenic 50.0%
!! AGAACCATGGGTTAGTCTGG+TGG - chr7_1:66250932-66250951 Msa1031530:CDS 50.0%
AAGACTGTGAACTCCCCCAG+TGG - chr7_1:66244467-66244486 Msa1031530:intron 55.0%
GACTTCCCTGCAGTACTGTC+AGG + chr7_1:66244733-66244752 None:intergenic 55.0%
GTAGAAGGGGTAGCTTCACG+AGG - chr7_1:66244890-66244909 Msa1031530:intron 55.0%
GGTGAGCTGAGGGACATAGA+AGG + chr7_1:66245014-66245033 None:intergenic 55.0%
! GGTTCTGATGTAGGCAAGGG+TGG - chr7_1:66245219-66245238 Msa1031530:intron 55.0%
GCAAGGGTGGAATGGTTGAG+AGG - chr7_1:66245232-66245251 Msa1031530:intron 55.0%
GGTTCAGTCAACCCGTGCAT+CGG + chr7_1:66247288-66247307 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG - chr7_1:66247287-66247306 Msa1031530:intron 55.0%
AGCTGGCACAACGTGATCGA+TGG + chr7_1:66248425-66248444 None:intergenic 55.0%
CAGTGGGTGGACAATGGACA+TGG - chr7_1:66248446-66248465 Msa1031530:intron 55.0%
!! TTGGTGTCGTGCCATGCTTG+TGG + chr7_1:66249152-66249171 None:intergenic 55.0%
GCAACCACCAGACTAACCCA+TGG + chr7_1:66250939-66250958 None:intergenic 55.0%
GTGTGTCTGGCATCACACAC+AGG + chr7_1:66250970-66250989 None:intergenic 55.0%
CGCACTGAGCATAGAGGCCT+GGG + chr7_1:66244307-66244326 None:intergenic 60.0%
TGCACGCGCACTGAGCATAG+AGG + chr7_1:66244313-66244332 None:intergenic 60.0%
! GTGTAACCCGTGCCGATGCA+CGG - chr7_1:66247273-66247292 Msa1031530:intron 60.0%
! TGTAACCCGTGCCGATGCAC+GGG - chr7_1:66247274-66247293 Msa1031530:intron 60.0%
! AGTCAACCCGTGCATCGGCA+CGG + chr7_1:66247283-66247302 None:intergenic 60.0%
TCACGTTGTGCCAGCTGCAG+TGG - chr7_1:66248429-66248448 Msa1031530:intron 60.0%
CACGTTGTGCCAGCTGCAGT+GGG - chr7_1:66248430-66248449 Msa1031530:intron 60.0%
CATTGTCCACCCACTGCAGC+TGG + chr7_1:66248442-66248461 None:intergenic 60.0%
CAGCTGCAGTGGGTGGACAA+TGG - chr7_1:66248440-66248459 Msa1031530:intron 60.0%
GCTGAGGCACGTCCCAGTGA+AGG - chr7_1:66243632-66243651 Msa1031530:CDS 65.0%
GCGCACTGAGCATAGAGGCC+TGG + chr7_1:66244308-66244327 None:intergenic 65.0%
! GTCAACCCGTGCATCGGCAC+GGG + chr7_1:66247282-66247301 None:intergenic 65.0%
GTTGTGCCAGCTGCAGTGGG+TGG - chr7_1:66248433-66248452 Msa1031530:intron 65.0%
CTGGGGAACATGGGGGGAGA+AGG - chr7_1:66248798-66248817 Msa1031530:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 66243257 66251249 66243257 ID=Msa1031530;Name=Msa1031530
chr7_1 mRNA 66243257 66251249 66243257 ID=Msa1031530-mRNA-1;Parent=Msa1031530;Name=Msa1031530-mRNA-1;_AED=0.11;_eAED=0.11;_QI=198|1|1|1|0.66|0.85|7|316|275
chr7_1 exon 66243257 66243686 66243257 ID=Msa1031530-mRNA-1:exon:14837;Parent=Msa1031530-mRNA-1
chr7_1 exon 66243910 66243993 66243910 ID=Msa1031530-mRNA-1:exon:14836;Parent=Msa1031530-mRNA-1
chr7_1 exon 66246029 66246110 66246029 ID=Msa1031530-mRNA-1:exon:14835;Parent=Msa1031530-mRNA-1
chr7_1 exon 66247654 66247748 66247654 ID=Msa1031530-mRNA-1:exon:14834;Parent=Msa1031530-mRNA-1
chr7_1 exon 66249989 66250063 66249989 ID=Msa1031530-mRNA-1:exon:14833;Parent=Msa1031530-mRNA-1
chr7_1 exon 66250411 66250465 66250411 ID=Msa1031530-mRNA-1:exon:14832;Parent=Msa1031530-mRNA-1
chr7_1 exon 66250729 66251249 66250729 ID=Msa1031530-mRNA-1:exon:14831;Parent=Msa1031530-mRNA-1
chr7_1 five_prime_UTR 66251052 66251249 66251052 ID=Msa1031530-mRNA-1:five_prime_utr;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66250729 66251051 66250729 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66250411 66250465 66250411 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66249989 66250063 66249989 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66247654 66247748 66247654 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66246029 66246110 66246029 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66243910 66243993 66243910 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 CDS 66243573 66243686 66243573 ID=Msa1031530-mRNA-1:cds;Parent=Msa1031530-mRNA-1
chr7_1 three_prime_UTR 66243257 66243572 66243257 ID=Msa1031530-mRNA-1:three_prime_utr;Parent=Msa1031530-mRNA-1
Gene Sequence

>Msa1031530

ATGGCACAGTTCACTGCACAAGGTCGCTTGAAGCTTCTCTTCAATGGAGAAACTGTGTCATCTCTCATGGTTCAGACCCACAAGAGAAGAACAAGTTACAAAGGTTCTTCTTCTTTTGCTTCTAGATTTCACCATGCATCTTCTTCATACCTCAGAAGCAAAGGGAAGTGTTGTAATGCTGAGGCACGTCCCAGTGAAGGTGTTCATGATGAATATGCATATGTTTTTGAATATGATTCTGTTGATGAGGATGATGATGATGATGTATTCGATGGTGATGGCTTGTCTGGTTTCAGGGGTCTTGTGTTGGATATATCTTACAGGCCAGTCAATGTTGTATGCTGGAAACGTGCCATTTGTTTAGAGTTTATGGAGAAGGCTGATGTACTAGAGTATTATGATAAGACTGTGAACTCCCCCAGTGGATCTTTCTATATACCAGCTGTCTTAAGGGTTCGTCATTTACTTCAGATTATTAAAAGAAGAAGAGTAGTCAAGAACAGTCTTAGTCGGAAAAATATACTGTTTAGAGACAATTACACCTGTCAGTATTGCTCTTCACATGAGAATTTGACCATCGATCACGTTGTGCCAGCTGCAGTGGGTGGACAATGGACATGGGAAAATCTAGTGACTGCTTGTTCCAGATGCAACTCAAAGAAAGGACGAAAGTCCTTAGAGGAAGCAAAAATGAAGTTGATTAAGGTCCCAAAGAAACCAAAGGACTATGACATTCTTGCCATACCTCTAACAGCAGCAGCTCTAAGAGTTCTGACCGCGAAAAAGGGCACACCTGATGAATGGCGTCAGTATCTAAGTTCCTCTTAG

Protein sequence

>Msa1031530

MAQFTAQGRLKLLFNGETVSSLMVQTHKRRTSYKGSSSFASRFHHASSSYLRSKGKCCNAEARPSEGVHDEYAYVFEYDSVDEDDDDDVFDGDGLSGFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDKTVNSPSGSFYIPAVLRVRHLLQIIKRRRVVKNSLSRKNILFRDNYTCQYCSSHENLTIDHVVPAAVGGQWTWENLVTACSRCNSKKGRKSLEEAKMKLIKVPKKPKDYDILAIPLTAAALRVLTAKKGTPDEWRQYLSSS*