AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160650 MtrunA17_Chr1g0173891 87.634 372 5 3 136 466 1 372 0.0 641
Msa0160650 MtrunA17_Chr1g0186021 34.943 352 179 6 113 419 122 468 2.36e-61 208
Msa0160650 MtrunA17_Chr8g0380251 33.699 365 193 7 100 421 86 444 2.37e-60 204
Msa0160650 MtrunA17_Chr1g0173881 86.441 118 16 0 1 118 1 118 5.47e-53 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160650 AT3G57680.1 67.963 437 94 5 75 466 84 519 0.0 593
Msa0160650 AT3G57680.3 65.946 370 81 4 142 466 1 370 1.42e-169 482
Msa0160650 AT3G57680.2 65.946 370 81 4 142 466 1 370 1.42e-169 482
Msa0160650 AT4G17740.2 36.364 352 174 6 113 419 124 470 2.96e-62 211
Msa0160650 AT4G17740.1 36.364 352 174 6 113 419 134 480 3.61e-62 211
Msa0160650 AT5G46390.2 31.856 361 197 6 104 421 114 468 4.15e-52 183
Msa0160650 AT5G46390.1 25.347 288 166 6 104 348 114 395 6.83e-23 101

Find 112 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACAAACCTACCAAATT+TGG 0.155558 1_4:-33755861 None:intergenic
TGAAGAGAAGGAGGTGAATA+AGG 0.261653 1_4:+33755950 Msa0160650:CDS
TTCTTTACTTTGATTAATCT+TGG 0.272171 1_4:-33755770 None:intergenic
TAAAGTACCAAAACCAAATT+TGG 0.279525 1_4:+33755848 Msa0160650:CDS
AAACCTACCAAATTTGGTTT+TGG 0.289069 1_4:-33755855 None:intergenic
GATGAATTAGTTGAAATAAA+TGG 0.303515 1_4:+33758477 Msa0160650:CDS
TCTGCAGGGGAGAGGCTTAA+TGG 0.311415 1_4:+33758645 Msa0160650:intron
TGAGATTGAGGCCTTATCTT+TGG 0.316864 1_4:-33761337 None:intergenic
GTTTGTTTCCTCGTAGGTTA+TGG 0.324357 1_4:+33755874 Msa0160650:CDS
TGAAGCATGGGGTTTGATTC+GGG 0.349053 1_4:+33757331 Msa0160650:CDS
TTGAAGCATGGGGTTTGATT+CGG 0.352478 1_4:+33757330 Msa0160650:CDS
TCTTTGGTTGATAGTTCCTT+TGG 0.354259 1_4:-33761321 None:intergenic
ACCTCAGGTGCCCGTGAAAC+AGG 0.369491 1_4:-33756101 None:intergenic
CTTGTGGGGAACAAAACATT+TGG 0.382361 1_4:+33760713 Msa0160650:CDS
GGTGCAGCACAGAGGCTTAG+AGG 0.393697 1_4:+33758681 Msa0160650:CDS
TCTGTCGTGCACTGAACGTC+TGG 0.404197 1_4:-33761288 None:intergenic
CGTGATGCCCATGTTGTTGT+TGG 0.405184 1_4:-33755903 None:intergenic
TGTTCAAGAAACAGTCCCTT+TGG 0.409726 1_4:-33761418 None:intergenic
GCTGGGGCGTTACATGATAA+TGG 0.413961 1_4:+33760680 Msa0160650:CDS
GGTGAATAAGGTAGTGGTAG+TGG 0.419882 1_4:+33755962 Msa0160650:CDS
ATTTGGAAAAGGAAAGATTC+AGG 0.435352 1_4:+33760730 Msa0160650:CDS
CAGGGTGGTTTGGTAAAGGC+TGG 0.435408 1_4:+33760004 Msa0160650:intron
TAAGGCCTCAATCTCATCTC+TGG 0.437628 1_4:+33761344 Msa0160650:CDS
GTTGCTCAGATGTGGTTAGA+TGG 0.450686 1_4:+33760034 Msa0160650:CDS
GTCGTTTGAGGTTGAAGAGA+AGG 0.458986 1_4:+33755938 Msa0160650:CDS
GAAGAGGAAGGTGTCGTTTG+AGG 0.459539 1_4:+33755926 Msa0160650:CDS
TGAATACCGGCACGAGCAGC+TGG 0.467849 1_4:-33758447 None:intergenic
AAACAGGAAAAGCGACAGTA+AGG 0.470276 1_4:-33756085 None:intergenic
TGAGGATCTGTGTGGAATGA+TGG 0.470732 1_4:-33759315 None:intergenic
GGGAACAAAACATTTGGAAA+AGG 0.480082 1_4:+33760719 Msa0160650:CDS
GGAATGATGGCACTTGATAT+TGG 0.490763 1_4:-33759302 None:intergenic
TTCATCTCCTTGATGAATAC+CGG 0.491367 1_4:-33758460 None:intergenic
AATGGTCGAGCTATTCTTGT+GGG 0.494288 1_4:+33760698 Msa0160650:CDS
AAGAACACTTGTTGAAGCAT+GGG 0.496612 1_4:+33757319 Msa0160650:CDS
GTTGCAGGGTGGTTTGGTAA+AGG 0.496883 1_4:+33760000 Msa0160650:intron
TTTCTATGTTGAAAGTTGAA+AGG 0.497853 1_4:+33761468 Msa0160650:three_prime_UTR
TCCTGTTTCACGGGCACCTG+AGG 0.498802 1_4:+33756100 Msa0160650:CDS
GAAGGAGGTGAATAAGGTAG+TGG 0.501122 1_4:+33755956 Msa0160650:CDS
CACTAGAATTATTAGTCCGA+AGG 0.501167 1_4:+33757672 Msa0160650:CDS
GGTTGACAATTTCACATAGC+CGG 0.503195 1_4:-33759357 None:intergenic
GAAATTGTCAACCTTCTCTC+AGG 0.507010 1_4:+33759367 Msa0160650:CDS
CAGAGGCTTAGAGGGAATGC+TGG 0.507723 1_4:+33758690 Msa0160650:CDS
GATCCTACATTTAATCATCA+AGG 0.509526 1_4:+33757365 Msa0160650:CDS
ATGGCCATTGATCATATTGA+TGG 0.511224 1_4:-33760104 None:intergenic
AGAACATGAGTTGGATATGA+AGG 0.513377 1_4:+33761392 Msa0160650:CDS
CGACCTGATCTATGTCATGA+AGG 0.514048 1_4:-33761257 None:intergenic
TTCATGACATAGATCAGGTC+GGG 0.516139 1_4:+33761259 Msa0160650:CDS
GGAACTATCAACCAAAGATA+AGG 0.519630 1_4:+33761326 Msa0160650:CDS
AAAGAACACTTGTTGAAGCA+TGG 0.521686 1_4:+33757318 Msa0160650:CDS
GTGCAGCACAGAGGCTTAGA+GGG 0.523821 1_4:+33758682 Msa0160650:CDS
TCACCCATCAATATGATCAA+TGG 0.524362 1_4:+33760100 Msa0160650:CDS
GCCTTGATGTTGCTCAGATG+TGG 0.524512 1_4:+33760026 Msa0160650:CDS
TGATCTATGTCATGAAGGGC+TGG 0.525259 1_4:-33761252 None:intergenic
AACAGTCCAGCTGCTCGTGC+CGG 0.526284 1_4:+33758441 Msa0160650:CDS
TATTGAATGATATATACAAT+CGG 0.529881 1_4:-33761568 None:intergenic
CGCCCCAGCTAAAATCTCGC+TGG 0.533641 1_4:-33760666 None:intergenic
ACACAGATCCTCAGAAGGGC+AGG 0.537133 1_4:+33759325 Msa0160650:CDS
AGCCCTTCATGACATAGATC+AGG 0.537489 1_4:+33761254 Msa0160650:CDS
TATGTATATATATAAAATAG+TGG 0.541214 1_4:+33761543 Msa0160650:three_prime_UTR
AGGGATTGAGAGAGAGCTGT+TGG 0.547536 1_4:-33756065 None:intergenic
TGGTAGGTTTGTTTCCTCGT+AGG 0.548540 1_4:+33755868 Msa0160650:CDS
GTACCAAAACCAAATTTGGT+AGG 0.549119 1_4:+33755852 Msa0160650:CDS
ATACCTTGATGATTAAATGT+AGG 0.550456 1_4:-33757368 None:intergenic
GTACTCACAATCACTACAAG+TGG 0.553433 1_4:-33760142 None:intergenic
ACTCATTCATACTTGATCTA+CGG 0.556612 1_4:+33759877 Msa0160650:CDS
GTGAATACGATTGATAGAGA+TGG 0.558990 1_4:+33760070 Msa0160650:CDS
CATGGTAGCAGAACATGAGT+TGG 0.559462 1_4:+33761383 Msa0160650:CDS
GATCTGATTCTGCAGGGGAG+AGG 0.559857 1_4:+33758637 Msa0160650:intron
GGACTAATAATTCTAGTGAA+AGG 0.566046 1_4:-33757667 None:intergenic
GTTTGAGGTTGAAGAGAAGG+AGG 0.567938 1_4:+33755941 Msa0160650:CDS
CAACATGGGCATCACGGAAG+AGG 0.568371 1_4:+33755910 Msa0160650:CDS
GGTTACTACCAACAACAACA+TGG 0.570072 1_4:+33755895 Msa0160650:CDS
AGTGTCACTCAGCTTCATGA+TGG 0.570563 1_4:+33761192 Msa0160650:CDS
TGCTTCCAGAGATGAGATTG+AGG 0.571908 1_4:-33761349 None:intergenic
GAGAGCTTGATATACTCCCT+TGG 0.574347 1_4:-33759278 None:intergenic
TGGAACAACTGTTACAGTAA+AGG 0.574531 1_4:+33758710 Msa0160650:CDS
GGAAGCAGATTCATGCATCA+TGG 0.580176 1_4:+33761365 Msa0160650:CDS
GACAGAAATGCTTTCACCAA+AGG 0.581163 1_4:+33761305 Msa0160650:CDS
CAACAACAACATGGGCATCA+CGG 0.583305 1_4:+33755904 Msa0160650:CDS
TCTTCTGCTCACCTGAGAGA+AGG 0.584131 1_4:-33759378 None:intergenic
GTTTCCTCAACAGGTCAATG+AGG 0.589655 1_4:+33760631 Msa0160650:intron
TGGATATGAAGGATTCCAAA+GGG 0.591184 1_4:+33761403 Msa0160650:CDS
GCTCGTGCCGGTATTCATCA+AGG 0.592072 1_4:+33758453 Msa0160650:CDS
TTTCCTCAACAGGTCAATGA+GGG 0.594501 1_4:+33760632 Msa0160650:intron
TAATTTAGGTTAAATTACCA+AGG 0.597741 1_4:+33759261 Msa0160650:intron
GTGGATCATGTGTTATAGCA+TGG 0.598447 1_4:-33760123 None:intergenic
ATCAGCCCTCTTTGTTACAG+TGG 0.602610 1_4:+33761215 Msa0160650:CDS
AATAAGGTAGTGGTAGTGGA+AGG 0.603341 1_4:+33755966 Msa0160650:CDS
AGAACACTTGTTGAAGCATG+GGG 0.604949 1_4:+33757320 Msa0160650:CDS
GCTGCATCAGCTGAGTTCAA+AGG 0.605499 1_4:-33757604 None:intergenic
ACCACATCTGAGCAACATCA+AGG 0.606193 1_4:-33760027 None:intergenic
GACCTGATCTATGTCATGAA+GGG 0.610507 1_4:-33761256 None:intergenic
AATTTAGGTTAAATTACCAA+GGG 0.612832 1_4:+33759262 Msa0160650:intron
GAAGTTGCAGCAAACAATGG+TGG 0.613750 1_4:+33757573 Msa0160650:CDS
ATTCCACACAGATCCTCAGA+AGG 0.618716 1_4:+33759320 Msa0160650:CDS
AGTGGAATGCTTTCTACACT+CGG 0.620095 1_4:+33757640 Msa0160650:CDS
AACAGGAAAAGCGACAGTAA+GGG 0.624915 1_4:-33756084 None:intergenic
ATGGGCATCACGGAAGAGGA+AGG 0.625191 1_4:+33755914 Msa0160650:CDS
GTTAGATGGAGATGAGACTC+TGG 0.626212 1_4:+33760048 Msa0160650:CDS
TTGGATATGAAGGATTCCAA+AGG 0.629055 1_4:+33761402 Msa0160650:CDS
TATGAAGTTGCAGCAAACAA+TGG 0.629584 1_4:+33757570 Msa0160650:CDS
CTTAATGGCATTGATAGTGA+AGG 0.632924 1_4:+33758660 Msa0160650:CDS
TGCCCTTCTGAGGATCTGTG+TGG 0.639411 1_4:-33759323 None:intergenic
CTTCATGACATAGATCAGGT+CGG 0.643951 1_4:+33761258 Msa0160650:CDS
TAATGGTCGAGCTATTCTTG+TGG 0.648076 1_4:+33760697 Msa0160650:CDS
GTTACTACCAACAACAACAT+GGG 0.656333 1_4:+33755896 Msa0160650:CDS
TGGCCATTGATCATATTGAT+GGG 0.677501 1_4:-33760103 None:intergenic
TTCCACACAGATCCTCAGAA+GGG 0.677870 1_4:+33759321 Msa0160650:CDS
ATGGTCGAGCTATTCTTGTG+GGG 0.684296 1_4:+33760699 Msa0160650:CDS
TAGAAACTCTTATATCCGTG+AGG 0.718823 1_4:+33759079 Msa0160650:CDS
ATAGTGAAGGTGCAGCACAG+AGG 0.775625 1_4:+33758673 Msa0160650:CDS
GGTAGTAACCATAACCTACG+AGG 0.780903 1_4:-33755882 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAATACATAATATATAA+AGG - chr1_4:33756537-33756556 None:intergenic 10.0%
!!! ATAACTTTTAAAAATATGAA+AGG + chr1_4:33756606-33756625 Msa0160650:intron 10.0%
!!! TAACTTTTAAAAATATGAAA+GGG + chr1_4:33756607-33756626 Msa0160650:intron 10.0%
!!! TCAATTTGTTTTAAAAAAAA+TGG - chr1_4:33756711-33756730 None:intergenic 10.0%
!!! ATATGATTTTTTTTCTTTAT+GGG - chr1_4:33756954-33756973 None:intergenic 10.0%
!!! TTATTTTTATTGCTTTTTAT+TGG + chr1_4:33757021-33757040 Msa0160650:intron 10.0%
!! ATTTAACCTAAATTATATAT+TGG - chr1_4:33759256-33759275 None:intergenic 10.0%
!! TATGTATATATATAAAATAG+TGG + chr1_4:33761543-33761562 Msa0160650:three_prime_UTR 10.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG - chr1_4:33756332-33756351 None:intergenic 15.0%
!!! ATTTTGTAGTTTTTTTTCTT+AGG - chr1_4:33756333-33756352 None:intergenic 15.0%
!!! CATATGATTTTTTTTCTTTA+TGG - chr1_4:33756955-33756974 None:intergenic 15.0%
!! CATAAAGAAAAAAAATCATA+TGG + chr1_4:33756953-33756972 Msa0160650:intron 15.0%
!! AATAAAAATAATACCAACAT+GGG - chr1_4:33757012-33757031 None:intergenic 15.0%
!!! TTTTTGCATTATAATTCAAA+GGG + chr1_4:33757082-33757101 Msa0160650:intron 15.0%
!! ACTAAATAAAACTAAGAATT+TGG + chr1_4:33757109-33757128 Msa0160650:intron 15.0%
!! TGTATCTTACTTTAATTATA+AGG + chr1_4:33757967-33757986 Msa0160650:intron 15.0%
!! GTATCTTACTTTAATTATAA+GGG + chr1_4:33757968-33757987 Msa0160650:intron 15.0%
!!! AATTAAAGTCTTATGTTTAA+CGG + chr1_4:33758067-33758086 Msa0160650:intron 15.0%
!! AGACAATCATAATTTAAAAA+CGG - chr1_4:33758362-33758381 None:intergenic 15.0%
!!! ATATTTTAGAATAACTAACT+TGG - chr1_4:33758509-33758528 None:intergenic 15.0%
!!! AATTTTCTTTTGTTTGAAAA+TGG + chr1_4:33758615-33758634 Msa0160650:intron 15.0%
!! ATATTAAGATAAAGTTTGTA+CGG - chr1_4:33759489-33759508 None:intergenic 15.0%
!! TACAAACTTTATCTTAATAT+CGG + chr1_4:33759489-33759508 Msa0160650:intron 15.0%
!! AAATGAATGATAAAAAATTC+AGG - chr1_4:33760505-33760524 None:intergenic 15.0%
!! TATTGAATGATATATACAAT+CGG - chr1_4:33761571-33761590 None:intergenic 15.0%
!!! TTGTCATAATACAATATTTT+TGG + chr1_4:33761645-33761664 Msa0160650:three_prime_UTR 15.0%
!! TTCTTTACTTTGATTAATCT+TGG - chr1_4:33755773-33755792 None:intergenic 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG - chr1_4:33756331-33756350 None:intergenic 20.0%
!! CAATAAAAATAATACCAACA+TGG - chr1_4:33757013-33757032 None:intergenic 20.0%
!! CTTTGAATTATAATGCAAAA+AGG - chr1_4:33757083-33757102 None:intergenic 20.0%
!!! CTTTTTGCATTATAATTCAA+AGG + chr1_4:33757081-33757100 Msa0160650:intron 20.0%
!!! AATGTTATTTATAAGACCTT+CGG - chr1_4:33757691-33757710 None:intergenic 20.0%
!! AAAAAGTAGTAACTTAAGAT+AGG + chr1_4:33757758-33757777 Msa0160650:intron 20.0%
!!! TGTTTTAAGGTCATATTAAT+TGG + chr1_4:33757881-33757900 Msa0160650:intron 20.0%
!! AATGTTAAAAGTCATATTTG+TGG + chr1_4:33757992-33758011 Msa0160650:intron 20.0%
!!! AAAAAACTAATTTTAGAAGG+AGG - chr1_4:33758274-33758293 None:intergenic 20.0%
!!! AGGAAAAAACTAATTTTAGA+AGG - chr1_4:33758277-33758296 None:intergenic 20.0%
!!! AATTTTGAATGGAAAATTGA+AGG - chr1_4:33758297-33758316 None:intergenic 20.0%
!!! AATTTTCCATTCAAAATTCT+TGG + chr1_4:33758299-33758318 Msa0160650:intron 20.0%
!! TAAAAATATCTGAAAATCAC+AGG + chr1_4:33758398-33758417 Msa0160650:intron 20.0%
!! GATGAATTAGTTGAAATAAA+TGG + chr1_4:33758477-33758496 Msa0160650:CDS 20.0%
!! AATTCACAATATTCTATTGA+TGG + chr1_4:33759229-33759248 Msa0160650:intron 20.0%
!!! TAATTTAGGTTAAATTACCA+AGG + chr1_4:33759261-33759280 Msa0160650:intron 20.0%
!!! AATTTAGGTTAAATTACCAA+GGG + chr1_4:33759262-33759281 Msa0160650:intron 20.0%
!! TATTAAGATAAAGTTTGTAC+GGG - chr1_4:33759488-33759507 None:intergenic 20.0%
!! ACGTAAACATTTATATGATA+AGG + chr1_4:33759719-33759738 Msa0160650:intron 20.0%
!!! AACTGAAATTTTCATGAAAA+TGG - chr1_4:33759920-33759939 None:intergenic 20.0%
!!! AATTTCAGTTTTACAATTTG+TGG + chr1_4:33759930-33759949 Msa0160650:intron 20.0%
!! ATAAGTATATACTATTTCGA+GGG - chr1_4:33760373-33760392 None:intergenic 20.0%
!! AATAAGTATATACTATTTCG+AGG - chr1_4:33760374-33760393 None:intergenic 20.0%
!! TATTAAGCAATATTTCCAAA+AGG + chr1_4:33760813-33760832 Msa0160650:intron 20.0%
!!! ATTTTTCATGATTTTCCTTT+TGG - chr1_4:33760831-33760850 None:intergenic 20.0%
!! ACATGTATTAGTATTATGTT+CGG - chr1_4:33761026-33761045 None:intergenic 20.0%
!!! CTATTTTCTCAAATTATTAC+CGG + chr1_4:33761063-33761082 Msa0160650:intron 20.0%
!!! AAATTTGGTTTTGGTACTTT+AGG - chr1_4:33755849-33755868 None:intergenic 25.0%
!! TAAAGTACCAAAACCAAATT+TGG + chr1_4:33755848-33755867 Msa0160650:CDS 25.0%
!! AAAAGTGTGTTAGAAAAAGA+GGG + chr1_4:33756244-33756263 Msa0160650:intron 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG - chr1_4:33756330-33756349 None:intergenic 25.0%
! CAAAATTTACATGTCAACTA+TGG - chr1_4:33756445-33756464 None:intergenic 25.0%
!!! ATCTGAAATTCACCTTTTTA+AGG + chr1_4:33756477-33756496 Msa0160650:intron 25.0%
!! CTTACTTGTTAACCTTAAAA+AGG - chr1_4:33756492-33756511 None:intergenic 25.0%
!!! CTTTTTAAGGTTAACAAGTA+AGG + chr1_4:33756490-33756509 Msa0160650:intron 25.0%
!!! TTTTTTTTCCTTAACTCAGT+TGG - chr1_4:33756563-33756582 None:intergenic 25.0%
!!! GATTTTTTTTCTTTATGGGA+AGG - chr1_4:33756950-33756969 None:intergenic 25.0%
!!! AAAGGAGTACTACTTATTTT+GGG - chr1_4:33757065-33757084 None:intergenic 25.0%
!!! AAAAGGAGTACTACTTATTT+TGG - chr1_4:33757066-33757085 None:intergenic 25.0%
! TTAACAAACTCGAGTATTTA+GGG - chr1_4:33757227-33757246 None:intergenic 25.0%
! ATTAACAAACTCGAGTATTT+AGG - chr1_4:33757228-33757247 None:intergenic 25.0%
!! ATACCTTGATGATTAAATGT+AGG - chr1_4:33757371-33757390 None:intergenic 25.0%
! ATGCATTCTATATGCAAATT+TGG - chr1_4:33757443-33757462 None:intergenic 25.0%
! GCAATAACATTACCATATAT+TGG - chr1_4:33757793-33757812 None:intergenic 25.0%
!! AGATCAACAAATCTGTTTTA+AGG + chr1_4:33757868-33757887 Msa0160650:intron 25.0%
! TTAAAAGTCATATTTGTGGT+TGG + chr1_4:33757996-33758015 Msa0160650:intron 25.0%
! GAAACTATGATATTTCACAA+TGG - chr1_4:33758737-33758756 None:intergenic 25.0%
!! AACTTTCAGTTTCTTTTTCT+TGG + chr1_4:33758879-33758898 Msa0160650:intron 25.0%
!! ACCTTGACTACTTTAAAAAA+TGG + chr1_4:33758919-33758938 Msa0160650:intron 25.0%
!!! TCCATTTTTTAAAGTAGTCA+AGG - chr1_4:33758923-33758942 None:intergenic 25.0%
!! AAATTTTCAACTTTACCTCA+CGG - chr1_4:33759097-33759116 None:intergenic 25.0%
!!! TTTTGAAGTTCAAACACAAA+GGG - chr1_4:33759211-33759230 None:intergenic 25.0%
!!! ATTTTGAAGTTCAAACACAA+AGG - chr1_4:33759212-33759231 None:intergenic 25.0%
! GATGGTCCAATATATAATTT+AGG + chr1_4:33759247-33759266 Msa0160650:intron 25.0%
!!! CTTTAGTTTATCTTTTGTTC+TGG + chr1_4:33759685-33759704 Msa0160650:intron 25.0%
! TATGGTACAAGATAAGTTTA+TGG - chr1_4:33759788-33759807 None:intergenic 25.0%
! ATTCAGGAAATGAAAAATCA+AGG + chr1_4:33759849-33759868 Msa0160650:intron 25.0%
! TCATGAAAATGGTAAATTAC+AGG - chr1_4:33759909-33759928 None:intergenic 25.0%
!! AAAATTTCAGGTAAAAACGT+AGG - chr1_4:33759980-33759999 None:intergenic 25.0%
! TCATGTGGTACAAAATAAAA+AGG - chr1_4:33760199-33760218 None:intergenic 25.0%
! CAGTGAATGTTAAATTGATT+TGG + chr1_4:33760258-33760277 Msa0160650:intron 25.0%
! ATAGAAAATCAAGATGTGAA+AGG - chr1_4:33760558-33760577 None:intergenic 25.0%
! AAGGAAAATCATGAAAAATG+AGG + chr1_4:33760832-33760851 Msa0160650:intron 25.0%
! GGTAATGTAATGTATATATG+AGG + chr1_4:33760853-33760872 Msa0160650:intron 25.0%
! TTAAACAGAAAACACTCTTA+TGG - chr1_4:33760904-33760923 None:intergenic 25.0%
!!! AAGAGTGTTTTCTGTTTAAA+AGG + chr1_4:33760905-33760924 Msa0160650:intron 25.0%
! CATGTATTAGTATTATGTTC+GGG - chr1_4:33761025-33761044 None:intergenic 25.0%
! GAACATAATACTAATACATG+TGG + chr1_4:33761025-33761044 Msa0160650:intron 25.0%
! TTTCTATGTTGAAAGTTGAA+AGG + chr1_4:33761468-33761487 Msa0160650:three_prime_UTR 25.0%
!! AAACCTACCAAATTTGGTTT+TGG - chr1_4:33755858-33755877 None:intergenic 30.0%
!!! GCAAAAAGTGCTTTTAGATT+TGG + chr1_4:33756002-33756021 Msa0160650:CDS 30.0%
! GAAAAGTGTGTTAGAAAAAG+AGG + chr1_4:33756243-33756262 Msa0160650:intron 30.0%
! GAAAAAGAGGGTTTAAAACA+AGG + chr1_4:33756256-33756275 Msa0160650:intron 30.0%
TGCCACATTTACAAAACATA+GGG - chr1_4:33756360-33756379 None:intergenic 30.0%
! TTTTGTAAATGTGGCAGTTT+TGG + chr1_4:33756364-33756383 Msa0160650:intron 30.0%
TATTCTTACCAACTGAGTTA+AGG + chr1_4:33756552-33756571 Msa0160650:intron 30.0%
GATCCTACATTTAATCATCA+AGG + chr1_4:33757365-33757384 Msa0160650:CDS 30.0%
TATGCAAATTTGGTACTTGA+AGG - chr1_4:33757433-33757452 None:intergenic 30.0%
TGCATCATACTAACATCTAT+TGG + chr1_4:33757458-33757477 Msa0160650:intron 30.0%
ATCGATGTTTATTACATCGA+CGG + chr1_4:33757507-33757526 Msa0160650:intron 30.0%
! TACACTTTTGCTTGTAGATT+GGG + chr1_4:33757546-33757565 Msa0160650:intron 30.0%
GGACTAATAATTCTAGTGAA+AGG - chr1_4:33757670-33757689 None:intergenic 30.0%
!! CAGATTTGTTGATCTAAGAA+TGG - chr1_4:33757863-33757882 None:intergenic 30.0%
! GTAAGATACATTTGATGATC+CGG - chr1_4:33757957-33757976 None:intergenic 30.0%
! GAATATCAGGGATTTAGAAT+CGG + chr1_4:33758106-33758125 Msa0160650:intron 30.0%
ACTGCATGATCAATTGAAAT+CGG - chr1_4:33758242-33758261 None:intergenic 30.0%
!! ACTAATTTTAGAAGGAGGTA+GGG - chr1_4:33758269-33758288 None:intergenic 30.0%
!! AACTAATTTTAGAAGGAGGT+AGG - chr1_4:33758270-33758289 None:intergenic 30.0%
! CTACTACCAAGAATTTTGAA+TGG - chr1_4:33758308-33758327 None:intergenic 30.0%
TTAAAAACGGAAATCAACAC+AGG - chr1_4:33758349-33758368 None:intergenic 30.0%
ATTACCATTTCAGTTTCACA+AGG - chr1_4:33758598-33758617 None:intergenic 30.0%
AAAAGAAAACAATGTGTCGA+AGG - chr1_4:33758838-33758857 None:intergenic 30.0%
! AGTTTCTTTTTCTTGGAGTT+AGG + chr1_4:33758886-33758905 Msa0160650:intron 30.0%
! GTTTCTTTTTCTTGGAGTTA+GGG + chr1_4:33758887-33758906 Msa0160650:intron 30.0%
! CTTGAAAACTTTTCTTCTCT+AGG + chr1_4:33759043-33759062 Msa0160650:intron 30.0%
AGATTCACCTATAGAAAAAC+TGG + chr1_4:33759398-33759417 Msa0160650:intron 30.0%
! TAGACATCCAGTTTTTCTAT+AGG - chr1_4:33759408-33759427 None:intergenic 30.0%
AACAAAGTTGTCTTTCCAAA+AGG + chr1_4:33759760-33759779 Msa0160650:intron 30.0%
ACAAAGTTGTCTTTCCAAAA+GGG + chr1_4:33759761-33759780 Msa0160650:intron 30.0%
CACTCTGTCAATAATCAATA+TGG - chr1_4:33759806-33759825 None:intergenic 30.0%
ACTCATTCATACTTGATCTA+CGG + chr1_4:33759877-33759896 Msa0160650:CDS 30.0%
! CAGTTTTACAATTTGTGGAT+TGG + chr1_4:33759935-33759954 Msa0160650:intron 30.0%
! TTTACCTGAAATTTTGTTGC+AGG + chr1_4:33759985-33760004 Msa0160650:intron 30.0%
! TTACCTGAAATTTTGTTGCA+GGG + chr1_4:33759986-33760005 Msa0160650:intron 30.0%
AGGTAAGTAAAGTCTAACTA+AGG - chr1_4:33760316-33760335 None:intergenic 30.0%
ATGACTAAAAGAAATGCAAG+TGG - chr1_4:33760414-33760433 None:intergenic 30.0%
ATTTGGAAAAGGAAAGATTC+AGG + chr1_4:33760730-33760749 Msa0160650:CDS 30.0%
TTTCATTTCTGTCAATCTCA+TGG + chr1_4:33761148-33761167 Msa0160650:intron 30.0%
!!! TTTGGTTTTGGTACTTTAGG+TGG - chr1_4:33755846-33755865 None:intergenic 35.0%
GTACCAAAACCAAATTTGGT+AGG + chr1_4:33755852-33755871 Msa0160650:CDS 35.0%
GGAAACAAACCTACCAAATT+TGG - chr1_4:33755864-33755883 None:intergenic 35.0%
GTTACTACCAACAACAACAT+GGG + chr1_4:33755896-33755915 Msa0160650:CDS 35.0%
! AAAACTTGTTCCACATACAG+TGG - chr1_4:33756199-33756218 None:intergenic 35.0%
! GCAACTTTGAGAAAGTTAGA+GGG - chr1_4:33756299-33756318 None:intergenic 35.0%
! CTTTCTCAAAGTTGCGATTT+TGG + chr1_4:33756304-33756323 Msa0160650:intron 35.0%
CCACATTTACAAAACATAGG+GGG - chr1_4:33756358-33756377 None:intergenic 35.0%
GCCACATTTACAAAACATAG+GGG - chr1_4:33756359-33756378 None:intergenic 35.0%
CTGCCACATTTACAAAACAT+AGG - chr1_4:33756361-33756380 None:intergenic 35.0%
GAAAATGACAAAACCCATGT+TGG + chr1_4:33756996-33757015 Msa0160650:intron 35.0%
TAAGTGTGATAATACTCGCA+GGG + chr1_4:33757163-33757182 Msa0160650:intron 35.0%
GTTACAATGCCAAATGTAAC+TGG - chr1_4:33757195-33757214 None:intergenic 35.0%
GTTACATTTGGCATTGTAAC+TGG + chr1_4:33757195-33757214 Msa0160650:intron 35.0%
! AAACCCTTTTCAACTAAGCA+CGG - chr1_4:33757277-33757296 None:intergenic 35.0%
! AAAGAACACTTGTTGAAGCA+TGG + chr1_4:33757318-33757337 Msa0160650:CDS 35.0%
! AAGAACACTTGTTGAAGCAT+GGG + chr1_4:33757319-33757338 Msa0160650:CDS 35.0%
TCGACGGATCAAATAACAAA+AGG + chr1_4:33757523-33757542 Msa0160650:intron 35.0%
! GTACACTTTTGCTTGTAGAT+TGG + chr1_4:33757545-33757564 Msa0160650:intron 35.0%
TATGAAGTTGCAGCAAACAA+TGG + chr1_4:33757570-33757589 Msa0160650:CDS 35.0%
!!! CATTCCACTGATTTTTGTGT+AGG - chr1_4:33757629-33757648 None:intergenic 35.0%
CACTAGAATTATTAGTCCGA+AGG + chr1_4:33757672-33757691 Msa0160650:CDS 35.0%
TCTCACTTACTTTCGTTTCT+TGG + chr1_4:33757724-33757743 Msa0160650:intron 35.0%
ACTTACTTTCGTTTCTTGGT+CGG + chr1_4:33757728-33757747 Msa0160650:intron 35.0%
AGGATCATAGCTCCAATATA+TGG + chr1_4:33757778-33757797 Msa0160650:intron 35.0%
!! TGTCAGCAACACTTTAGAAT+AGG - chr1_4:33757815-33757834 None:intergenic 35.0%
TTCGTACTTACAGGAATATC+AGG + chr1_4:33758093-33758112 Msa0160650:intron 35.0%
TCGTACTTACAGGAATATCA+GGG + chr1_4:33758094-33758113 Msa0160650:intron 35.0%
TTGGCTCAACATTTATGAAG+AGG - chr1_4:33758159-33758178 None:intergenic 35.0%
ATAAATGTTGAGCCAAGAAC+AGG + chr1_4:33758163-33758182 Msa0160650:intron 35.0%
!! CTAATTTTAGAAGGAGGTAG+GGG - chr1_4:33758268-33758287 None:intergenic 35.0%
TTCATCTCCTTGATGAATAC+CGG - chr1_4:33758463-33758482 None:intergenic 35.0%
TAGTCCTTGTGAAACTGAAA+TGG + chr1_4:33758591-33758610 Msa0160650:intron 35.0%
AAAATGGATCTGATTCTGCA+GGG + chr1_4:33758631-33758650 Msa0160650:intron 35.0%
!! CTTAATGGCATTGATAGTGA+AGG + chr1_4:33758660-33758679 Msa0160650:CDS 35.0%
TGGAACAACTGTTACAGTAA+AGG + chr1_4:33758710-33758729 Msa0160650:CDS 35.0%
!! TGTATGATAGAGAGTGCTTA+TGG + chr1_4:33758948-33758967 Msa0160650:intron 35.0%
!!! ACGAGTTTTCTAGAGCATTT+AGG + chr1_4:33759002-33759021 Msa0160650:intron 35.0%
TAGAAACTCTTATATCCGTG+AGG + chr1_4:33759079-33759098 Msa0160650:CDS 35.0%
TTAGAGATCAAAACGATAGC+TGG - chr1_4:33759459-33759478 None:intergenic 35.0%
GACTTATTTGAGCCTATCTA+CGG + chr1_4:33759522-33759541 Msa0160650:intron 35.0%
ACTTATTTGAGCCTATCTAC+GGG + chr1_4:33759523-33759542 Msa0160650:intron 35.0%
!!! TCTTGTTTTCGTAAGCTTTC+TGG + chr1_4:33759617-33759636 Msa0160650:intron 35.0%
!! CTTGTTTTCGTAAGCTTTCT+GGG + chr1_4:33759618-33759637 Msa0160650:intron 35.0%
! GATAAGTTTATGGACCCTTT+TGG - chr1_4:33759778-33759797 None:intergenic 35.0%
GTGAATACGATTGATAGAGA+TGG + chr1_4:33760070-33760089 Msa0160650:CDS 35.0%
TCACCCATCAATATGATCAA+TGG + chr1_4:33760100-33760119 Msa0160650:CDS 35.0%
TGGCCATTGATCATATTGAT+GGG - chr1_4:33760106-33760125 None:intergenic 35.0%
ATGGCCATTGATCATATTGA+TGG - chr1_4:33760107-33760126 None:intergenic 35.0%
ACTAAGGATTGTTCTAGTCA+GGG - chr1_4:33760300-33760319 None:intergenic 35.0%
AACTAAGGATTGTTCTAGTC+AGG - chr1_4:33760301-33760320 None:intergenic 35.0%
!! GCAATTTTTGTTTCCTCAAC+AGG + chr1_4:33760622-33760641 Msa0160650:intron 35.0%
GGGAACAAAACATTTGGAAA+AGG + chr1_4:33760719-33760738 Msa0160650:CDS 35.0%
GACAGAAATGAAAGAAGTCT+CGG - chr1_4:33761141-33761160 None:intergenic 35.0%
! TTTTGCCACTGTAACAAAGA+GGG - chr1_4:33761223-33761242 None:intergenic 35.0%
! ATTTTGCCACTGTAACAAAG+AGG - chr1_4:33761224-33761243 None:intergenic 35.0%
!! TCTTTGGTTGATAGTTCCTT+TGG - chr1_4:33761324-33761343 None:intergenic 35.0%
GGAACTATCAACCAAAGATA+AGG + chr1_4:33761326-33761345 Msa0160650:CDS 35.0%
! AGAACATGAGTTGGATATGA+AGG + chr1_4:33761392-33761411 Msa0160650:CDS 35.0%
TTGGATATGAAGGATTCCAA+AGG + chr1_4:33761402-33761421 Msa0160650:CDS 35.0%
TGGATATGAAGGATTCCAAA+GGG + chr1_4:33761403-33761422 Msa0160650:CDS 35.0%
GTTTGTTTCCTCGTAGGTTA+TGG + chr1_4:33755874-33755893 Msa0160650:CDS 40.0%
GGTTACTACCAACAACAACA+TGG + chr1_4:33755895-33755914 Msa0160650:CDS 40.0%
TGAAGAGAAGGAGGTGAATA+AGG + chr1_4:33755950-33755969 Msa0160650:CDS 40.0%
!! AATAAGGTAGTGGTAGTGGA+AGG + chr1_4:33755966-33755985 Msa0160650:CDS 40.0%
AACAGGAAAAGCGACAGTAA+GGG - chr1_4:33756087-33756106 None:intergenic 40.0%
AAACAGGAAAAGCGACAGTA+AGG - chr1_4:33756088-33756107 None:intergenic 40.0%
! ACACTCTTTTCCACTGTATG+TGG + chr1_4:33756186-33756205 Msa0160650:intron 40.0%
! TAACACACTTTTCTACTGCG+TGG - chr1_4:33756236-33756255 None:intergenic 40.0%
! CGCAACTTTGAGAAAGTTAG+AGG - chr1_4:33756300-33756319 None:intergenic 40.0%
! CCCCCTATGTTTTGTAAATG+TGG + chr1_4:33756355-33756374 Msa0160650:intron 40.0%
! AGGTTAACAAGTAAGGTGTC+TGG + chr1_4:33756497-33756516 Msa0160650:intron 40.0%
! GGTTAACAAGTAAGGTGTCT+GGG + chr1_4:33756498-33756517 Msa0160650:intron 40.0%
! GTTAACAAGTAAGGTGTCTG+GGG + chr1_4:33756499-33756518 Msa0160650:intron 40.0%
CTAAGTGTGATAATACTCGC+AGG + chr1_4:33757162-33757181 Msa0160650:intron 40.0%
CAAACTCGAGTATTTAGGGA+CGG - chr1_4:33757223-33757242 None:intergenic 40.0%
TCAACCGTGCTTAGTTGAAA+AGG + chr1_4:33757270-33757289 Msa0160650:intron 40.0%
CAACCGTGCTTAGTTGAAAA+GGG + chr1_4:33757271-33757290 Msa0160650:intron 40.0%
!! GTTGAAAAGGGTTTGTTGCT+AGG + chr1_4:33757283-33757302 Msa0160650:intron 40.0%
! AGAACACTTGTTGAAGCATG+GGG + chr1_4:33757320-33757339 Msa0160650:CDS 40.0%
TTGAAGCATGGGGTTTGATT+CGG + chr1_4:33757330-33757349 Msa0160650:CDS 40.0%
AGTGGAATGCTTTCTACACT+CGG + chr1_4:33757640-33757659 Msa0160650:CDS 40.0%
TGCCAATGAACTATAATCGC+CGG + chr1_4:33757935-33757954 Msa0160650:intron 40.0%
ATCCGGCGATTATAGTTCAT+TGG - chr1_4:33757940-33757959 None:intergenic 40.0%
TAACGGTGATTCGTACTTAC+AGG + chr1_4:33758084-33758103 Msa0160650:intron 40.0%
! GGATTTAGAATCGGAAGTGA+TGG + chr1_4:33758115-33758134 Msa0160650:intron 40.0%
! TCTTGGTAGTAGCTAGAACT+CGG + chr1_4:33758316-33758335 Msa0160650:intron 40.0%
GAAAATGGATCTGATTCTGC+AGG + chr1_4:33758630-33758649 Msa0160650:intron 40.0%
AAATGGATCTGATTCTGCAG+GGG + chr1_4:33758632-33758651 Msa0160650:intron 40.0%
GGAATGATGGCACTTGATAT+TGG - chr1_4:33759305-33759324 None:intergenic 40.0%
GGTTGACAATTTCACATAGC+CGG - chr1_4:33759360-33759379 None:intergenic 40.0%
GAAATTGTCAACCTTCTCTC+AGG + chr1_4:33759367-33759386 Msa0160650:CDS 40.0%
CGACTGTATGATAGAACTTG+TGG + chr1_4:33759560-33759579 Msa0160650:intron 40.0%
TGACATGCGAAATGCTATTC+AGG + chr1_4:33759833-33759852 Msa0160650:intron 40.0%
! AATTTTGTTGCAGGGTGGTT+TGG + chr1_4:33759994-33760013 Msa0160650:intron 40.0%
GTGGATCATGTGTTATAGCA+TGG - chr1_4:33760126-33760145 None:intergenic 40.0%
GTACTCACAATCACTACAAG+TGG - chr1_4:33760145-33760164 None:intergenic 40.0%
CACATGATCCACAAGTGATT+GGG + chr1_4:33760212-33760231 Msa0160650:intron 40.0%
TAATAATCCCATGTTCGGTC+AGG - chr1_4:33760339-33760358 None:intergenic 40.0%
TGACCGAACATGGGATTATT+AGG + chr1_4:33760338-33760357 Msa0160650:intron 40.0%
GACCGAACATGGGATTATTA+GGG + chr1_4:33760339-33760358 Msa0160650:intron 40.0%
AGCCCTAATAATCCCATGTT+CGG - chr1_4:33760344-33760363 None:intergenic 40.0%
GTCATTCTTGTATGTTTCCC+TGG + chr1_4:33760429-33760448 Msa0160650:intron 40.0%
TAACATAGAGACATGGTCCA+GGG - chr1_4:33760449-33760468 None:intergenic 40.0%
ACCATGTCTCTATGTTAGCA+AGG + chr1_4:33760452-33760471 Msa0160650:intron 40.0%
ACCTTGCTAACATAGAGACA+TGG - chr1_4:33760456-33760475 None:intergenic 40.0%
ATTGCCATTCATCCAACTAG+CGG - chr1_4:33760607-33760626 None:intergenic 40.0%
TTTCCTCAACAGGTCAATGA+GGG + chr1_4:33760632-33760651 Msa0160650:intron 40.0%
TAATGGTCGAGCTATTCTTG+TGG + chr1_4:33760697-33760716 Msa0160650:CDS 40.0%
AATGGTCGAGCTATTCTTGT+GGG + chr1_4:33760698-33760717 Msa0160650:CDS 40.0%
CTTGTGGGGAACAAAACATT+TGG + chr1_4:33760713-33760732 Msa0160650:CDS 40.0%
ACTCTTATGGAAGACTCGTT+TGG - chr1_4:33760891-33760910 None:intergenic 40.0%
ACACATGAAGACGAGAACAT+TGG - chr1_4:33761117-33761136 None:intergenic 40.0%
GACCTGATCTATGTCATGAA+GGG - chr1_4:33761259-33761278 None:intergenic 40.0%
CTTCATGACATAGATCAGGT+CGG + chr1_4:33761258-33761277 Msa0160650:CDS 40.0%
TTCATGACATAGATCAGGTC+GGG + chr1_4:33761259-33761278 Msa0160650:CDS 40.0%
GACAGAAATGCTTTCACCAA+AGG + chr1_4:33761305-33761324 Msa0160650:CDS 40.0%
! TGAGATTGAGGCCTTATCTT+TGG - chr1_4:33761340-33761359 None:intergenic 40.0%
TGTTCAAGAAACAGTCCCTT+TGG - chr1_4:33761421-33761440 None:intergenic 40.0%
! TGGTAGGTTTGTTTCCTCGT+AGG + chr1_4:33755868-33755887 Msa0160650:CDS 45.0%
GGTAGTAACCATAACCTACG+AGG - chr1_4:33755885-33755904 None:intergenic 45.0%
CAACAACAACATGGGCATCA+CGG + chr1_4:33755904-33755923 Msa0160650:CDS 45.0%
! GTCGTTTGAGGTTGAAGAGA+AGG + chr1_4:33755938-33755957 Msa0160650:CDS 45.0%
! GTTTGAGGTTGAAGAGAAGG+AGG + chr1_4:33755941-33755960 Msa0160650:CDS 45.0%
GAAGGAGGTGAATAAGGTAG+TGG + chr1_4:33755956-33755975 Msa0160650:CDS 45.0%
! GGTGAATAAGGTAGTGGTAG+TGG + chr1_4:33755962-33755981 Msa0160650:CDS 45.0%
!!! CTGTCGCTTTTCCTGTTTCA+CGG + chr1_4:33756090-33756109 Msa0160650:CDS 45.0%
!!! TGTCGCTTTTCCTGTTTCAC+GGG + chr1_4:33756091-33756110 Msa0160650:CDS 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - chr1_4:33756392-33756411 None:intergenic 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr1_4:33756399-33756418 None:intergenic 45.0%
TGTGATAATACTCGCAGGGA+CGG + chr1_4:33757167-33757186 Msa0160650:intron 45.0%
TGAAGCATGGGGTTTGATTC+GGG + chr1_4:33757331-33757350 Msa0160650:CDS 45.0%
GAAGTTGCAGCAAACAATGG+TGG + chr1_4:33757573-33757592 Msa0160650:CDS 45.0%
GCAGCCTACACAAAAATCAG+TGG + chr1_4:33757622-33757641 Msa0160650:CDS 45.0%
! GGAAGTGATGGAAACTTGCA+AGG + chr1_4:33758127-33758146 Msa0160650:intron 45.0%
GATGGAAACTTGCAAGGAGT+TGG + chr1_4:33758133-33758152 Msa0160650:intron 45.0%
TGAGCCAAGAACAGGACATT+TGG + chr1_4:33758171-33758190 Msa0160650:intron 45.0%
CTGACCAAATGTCCTGTTCT+TGG - chr1_4:33758178-33758197 None:intergenic 45.0%
GAGAGCTTGATATACTCCCT+TGG - chr1_4:33759281-33759300 None:intergenic 45.0%
TGAGGATCTGTGTGGAATGA+TGG - chr1_4:33759318-33759337 None:intergenic 45.0%
ATTCCACACAGATCCTCAGA+AGG + chr1_4:33759320-33759339 Msa0160650:CDS 45.0%
TTCCACACAGATCCTCAGAA+GGG + chr1_4:33759321-33759340 Msa0160650:CDS 45.0%
! TTTTATGACCTGCCCTTCTG+AGG - chr1_4:33759336-33759355 None:intergenic 45.0%
GAAGGGCAGGTCATAAAAAC+CGG + chr1_4:33759338-33759357 Msa0160650:CDS 45.0%
AAATGCACATGCCCGTAGAT+AGG - chr1_4:33759537-33759556 None:intergenic 45.0%
CCACCCTGCAACAAAATTTC+AGG - chr1_4:33759992-33760011 None:intergenic 45.0%
! CCTGAAATTTTGTTGCAGGG+TGG + chr1_4:33759989-33760008 Msa0160650:intron 45.0%
ACCACATCTGAGCAACATCA+AGG - chr1_4:33760030-33760049 None:intergenic 45.0%
GTTGCTCAGATGTGGTTAGA+TGG + chr1_4:33760034-33760053 Msa0160650:CDS 45.0%
GTTAGATGGAGATGAGACTC+TGG + chr1_4:33760048-33760067 Msa0160650:CDS 45.0%
CCAATCACTTGTGGATCATG+TGG - chr1_4:33760214-33760233 None:intergenic 45.0%
CCACATGATCCACAAGTGAT+TGG + chr1_4:33760211-33760230 Msa0160650:intron 45.0%
TCTAGTCAGGGTCTAGACAT+TGG - chr1_4:33760288-33760307 None:intergenic 45.0%
CTAACATAGAGACATGGTCC+AGG - chr1_4:33760450-33760469 None:intergenic 45.0%
TCTTGACTCAAACCGCTAGT+TGG + chr1_4:33760592-33760611 Msa0160650:intron 45.0%
CAAACCGCTAGTTGGATGAA+TGG + chr1_4:33760600-33760619 Msa0160650:intron 45.0%
GTTTCCTCAACAGGTCAATG+AGG + chr1_4:33760631-33760650 Msa0160650:intron 45.0%
ATGGTCGAGCTATTCTTGTG+GGG + chr1_4:33760699-33760718 Msa0160650:CDS 45.0%
AAGGCGTGTACCAAGCATAT+TGG + chr1_4:33760924-33760943 Msa0160650:intron 45.0%
TGTCCGAAACAAACACGTGT+CGG + chr1_4:33760992-33761011 Msa0160650:intron 45.0%
CGACAAAGACATGTTGGTAC+CGG - chr1_4:33761085-33761104 None:intergenic 45.0%
CGGTACCAACATGTCTTTGT+CGG + chr1_4:33761083-33761102 Msa0160650:intron 45.0%
CTACACCGACAAAGACATGT+TGG - chr1_4:33761091-33761110 None:intergenic 45.0%
! AGTGTCACTCAGCTTCATGA+TGG + chr1_4:33761192-33761211 Msa0160650:CDS 45.0%
ATCAGCCCTCTTTGTTACAG+TGG + chr1_4:33761215-33761234 Msa0160650:CDS 45.0%
TGATCTATGTCATGAAGGGC+TGG - chr1_4:33761255-33761274 None:intergenic 45.0%
AGCCCTTCATGACATAGATC+AGG + chr1_4:33761254-33761273 Msa0160650:CDS 45.0%
CGACCTGATCTATGTCATGA+AGG - chr1_4:33761260-33761279 None:intergenic 45.0%
TAAGGCCTCAATCTCATCTC+TGG + chr1_4:33761344-33761363 Msa0160650:CDS 45.0%
TGCTTCCAGAGATGAGATTG+AGG - chr1_4:33761352-33761371 None:intergenic 45.0%
GGAAGCAGATTCATGCATCA+TGG + chr1_4:33761365-33761384 Msa0160650:CDS 45.0%
CATGGTAGCAGAACATGAGT+TGG + chr1_4:33761383-33761402 Msa0160650:CDS 45.0%
!! AATAATACATAATATATAAA+GGG - chr1_4:33756536-33756555 None:intergenic 5.0%
CGTGATGCCCATGTTGTTGT+TGG - chr1_4:33755906-33755925 None:intergenic 50.0%
!! GAAGAGGAAGGTGTCGTTTG+AGG + chr1_4:33755926-33755945 Msa0160650:CDS 50.0%
AGGGATTGAGAGAGAGCTGT+TGG - chr1_4:33756068-33756087 None:intergenic 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG - chr1_4:33756390-33756409 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - chr1_4:33756391-33756410 None:intergenic 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + chr1_4:33756388-33756407 Msa0160650:intron 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - chr1_4:33756393-33756412 None:intergenic 50.0%
! CAAGTAAGGTGTCTGGGGTT+TGG + chr1_4:33756504-33756523 Msa0160650:intron 50.0%
! TAAGGTGTCTGGGGTTTGGA+CGG + chr1_4:33756508-33756527 Msa0160650:intron 50.0%
GGGACGGATCCAGTTACATT+TGG + chr1_4:33757183-33757202 Msa0160650:intron 50.0%
GCTGCATCAGCTGAGTTCAA+AGG - chr1_4:33757607-33757626 None:intergenic 50.0%
! ATAGTGAAGGTGCAGCACAG+AGG + chr1_4:33758673-33758692 Msa0160650:CDS 50.0%
TCTTCTGCTCACCTGAGAGA+AGG - chr1_4:33759381-33759400 None:intergenic 50.0%
!! GTTGCAGGGTGGTTTGGTAA+AGG + chr1_4:33760000-33760019 Msa0160650:intron 50.0%
GCCTTGATGTTGCTCAGATG+TGG + chr1_4:33760026-33760045 Msa0160650:CDS 50.0%
ACTTACCTCCTGACCGAACA+TGG + chr1_4:33760328-33760347 Msa0160650:intron 50.0%
CTTACCTCCTGACCGAACAT+GGG + chr1_4:33760329-33760348 Msa0160650:intron 50.0%
TAATCCCATGTTCGGTCAGG+AGG - chr1_4:33760336-33760355 None:intergenic 50.0%
CTTCCCTCATTGACCTGTTG+AGG - chr1_4:33760638-33760657 None:intergenic 50.0%
!! AGTGCCAGCGAGATTTTAGC+TGG + chr1_4:33760662-33760681 Msa0160650:CDS 50.0%
!!! GTGCCAGCGAGATTTTAGCT+GGG + chr1_4:33760663-33760682 Msa0160650:CDS 50.0%
!!! TGCCAGCGAGATTTTAGCTG+GGG + chr1_4:33760664-33760683 Msa0160650:CDS 50.0%
! GCTGGGGCGTTACATGATAA+TGG + chr1_4:33760680-33760699 Msa0160650:CDS 50.0%
GCGTGTACCAAGCATATTGG+CGG + chr1_4:33760927-33760946 Msa0160650:intron 50.0%
GTACCAAGCATATTGGCGGT+AGG + chr1_4:33760931-33760950 Msa0160650:intron 50.0%
ACACCTACCGCCAATATGCT+TGG - chr1_4:33760937-33760956 None:intergenic 50.0%
GCTCCAACACCACAGATTGA+AGG + chr1_4:33760960-33760979 Msa0160650:intron 50.0%
ACGCCTTCAATCTGTGGTGT+TGG - chr1_4:33760966-33760985 None:intergenic 50.0%
CCAAACACGCCTTCAATCTG+TGG - chr1_4:33760972-33760991 None:intergenic 50.0%
! CCACAGATTGAAGGCGTGTT+TGG + chr1_4:33760969-33760988 Msa0160650:intron 50.0%
! GCACCGACACGTGTTTGTTT+CGG - chr1_4:33760998-33761017 None:intergenic 50.0%
CAACATGGGCATCACGGAAG+AGG + chr1_4:33755910-33755929 Msa0160650:CDS 55.0%
ATGGGCATCACGGAAGAGGA+AGG + chr1_4:33755914-33755933 Msa0160650:CDS 55.0%
! GCTCGTGCCGGTATTCATCA+AGG + chr1_4:33758453-33758472 Msa0160650:CDS 55.0%
GATCTGATTCTGCAGGGGAG+AGG + chr1_4:33758637-33758656 Msa0160650:intron 55.0%
TCTGCAGGGGAGAGGCTTAA+TGG + chr1_4:33758645-33758664 Msa0160650:intron 55.0%
GTGCAGCACAGAGGCTTAGA+GGG + chr1_4:33758682-33758701 Msa0160650:CDS 55.0%
CAGAGGCTTAGAGGGAATGC+TGG + chr1_4:33758690-33758709 Msa0160650:CDS 55.0%
! TGCCCTTCTGAGGATCTGTG+TGG - chr1_4:33759326-33759345 None:intergenic 55.0%
ACACAGATCCTCAGAAGGGC+AGG + chr1_4:33759325-33759344 Msa0160650:CDS 55.0%
!! CAGGGTGGTTTGGTAAAGGC+TGG + chr1_4:33760004-33760023 Msa0160650:intron 55.0%
GTGAGCGACCCAATCACTTG+TGG - chr1_4:33760223-33760242 None:intergenic 55.0%
AAGTGATTGGGTCGCTCACG+TGG + chr1_4:33760224-33760243 Msa0160650:intron 55.0%
TCTGTCGTGCACTGAACGTC+TGG - chr1_4:33761291-33761310 None:intergenic 55.0%
TCCTGTTTCACGGGCACCTG+AGG + chr1_4:33756100-33756119 Msa0160650:CDS 60.0%
ACCTCAGGTGCCCGTGAAAC+AGG - chr1_4:33756104-33756123 None:intergenic 60.0%
GAGAGAGACGAGCTGACCTC+AGG - chr1_4:33756119-33756138 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG + chr1_4:33756373-33756392 Msa0160650:intron 60.0%
AACAGTCCAGCTGCTCGTGC+CGG + chr1_4:33758441-33758460 Msa0160650:CDS 60.0%
TGAATACCGGCACGAGCAGC+TGG - chr1_4:33758450-33758469 None:intergenic 60.0%
GGTGCAGCACAGAGGCTTAG+AGG + chr1_4:33758681-33758700 Msa0160650:CDS 60.0%
CGCCCCAGCTAAAATCTCGC+TGG - chr1_4:33760669-33760688 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 33755757 33761694 33755757 ID=Msa0160650;Name=Msa0160650
chr1_4 mRNA 33755757 33761694 33755757 ID=Msa0160650-mRNA-1;Parent=Msa0160650;Name=Msa0160650-mRNA-1;_AED=0.25;_eAED=0.25;_QI=50|0.8|0.90|1|1|1|11|257|466
chr1_4 exon 33755757 33756121 33755757 ID=Msa0160650-mRNA-1:exon:10456;Parent=Msa0160650-mRNA-1
chr1_4 exon 33757305 33757386 33757305 ID=Msa0160650-mRNA-1:exon:10457;Parent=Msa0160650-mRNA-1
chr1_4 exon 33757563 33757693 33757563 ID=Msa0160650-mRNA-1:exon:10458;Parent=Msa0160650-mRNA-1
chr1_4 exon 33758420 33758498 33758420 ID=Msa0160650-mRNA-1:exon:10459;Parent=Msa0160650-mRNA-1
chr1_4 exon 33758652 33758731 33758652 ID=Msa0160650-mRNA-1:exon:10460;Parent=Msa0160650-mRNA-1
chr1_4 exon 33759065 33759100 33759065 ID=Msa0160650-mRNA-1:exon:10461;Parent=Msa0160650-mRNA-1
chr1_4 exon 33759269 33759388 33759269 ID=Msa0160650-mRNA-1:exon:10462;Parent=Msa0160650-mRNA-1
chr1_4 exon 33759855 33759908 33759855 ID=Msa0160650-mRNA-1:exon:10463;Parent=Msa0160650-mRNA-1
chr1_4 exon 33760007 33760156 33760007 ID=Msa0160650-mRNA-1:exon:10464;Parent=Msa0160650-mRNA-1
chr1_4 exon 33760644 33760751 33760644 ID=Msa0160650-mRNA-1:exon:10465;Parent=Msa0160650-mRNA-1
chr1_4 exon 33761192 33761694 33761192 ID=Msa0160650-mRNA-1:exon:10466;Parent=Msa0160650-mRNA-1
chr1_4 five_prime_UTR 33755757 33755806 33755757 ID=Msa0160650-mRNA-1:five_prime_utr;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33755807 33756121 33755807 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33757305 33757386 33757305 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33757563 33757693 33757563 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33758420 33758498 33758420 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33758652 33758731 33758652 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33759065 33759100 33759065 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33759269 33759388 33759269 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33759855 33759908 33759855 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33760007 33760156 33760007 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33760644 33760751 33760644 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 CDS 33761192 33761437 33761192 ID=Msa0160650-mRNA-1:cds;Parent=Msa0160650-mRNA-1
chr1_4 three_prime_UTR 33761438 33761694 33761438 ID=Msa0160650-mRNA-1:three_prime_utr;Parent=Msa0160650-mRNA-1
Gene Sequence

>Msa0160650

ATGATGAACTTTGATGTTAAAGCAAGAATAAATATTCCACCTAAAGTACCAAAACCAAATTTGGTAGGTTTGTTTCCTCGTAGGTTATGGTTACTACCAACAACAACATGGGCATCACGGAAGAGGAAGGTGTCGTTTGAGGTTGAAGAGAAGGAGGTGAATAAGGTAGTGGTAGTGGAAGGAATTGAATCAGTTGCAAAAAGTGCTTTTAGATTTGGCTTTTCAGCAGCTCTTTCTTTCTGTATTTTCTGTCATGCACCAACAGCTCTCTCTCAATCCCTTACTGTCGCTTTTCCTGTTTCACGGGCACCTGAGGTGAATGCAGTTCAAAGAACACTTGTTGAAGCATGGGGTTTGATTCGGGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATATGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCTTTGAACTCAGCTGATGCAGCCTACACAAAAATCAGTGGAATGCTTTCTACACTCGGAGATCCTTTCACTAGAATTATTAGTCCGAAGGTTGTTTTGTCATGCATAGAAAACAGTCCAGCTGCTCGTGCCGGTATTCATCAAGGAGATGAATTAGTTGAAATAAATGGGGAGAGGCTTAATGGCATTGATAGTGAAGGTGCAGCACAGAGGCTTAGAGGGAATGCTGGAACAACTGTTACAGTAAAGGTCAAAGATTCGAGTAGAAACTCTTATATCCGTGAGGTTAAATTACCAAGGGAGTATATCAAGCTCTCGCCAATATCAAGTGCCATCATTCCACACAGATCCTCAGAAGGGCAGGTCATAAAAACCGGCTATGTGAAATTGTCAACCTTCTCTCAGGAAATGAAAAATCAAGGAGCACACTCATTCATACTTGATCTACGGAACAATCCTGGTGGTTTGGTAAAGGCTGGCCTTGATGTTGCTCAGATGTGGTTAGATGGAGATGAGACTCTGGTGAATACGATTGATAGAGATGGAAACATGTCACCCATCAATATGATCAATGGCCATGCTATAACACATGATCCACTTGTAGTGATTGTCAATGAGGGAAGTGCAAGTGCCAGCGAGATTTTAGCTGGGGCGTTACATGATAATGGTCGAGCTATTCTTGTGGGGAACAAAACATTTGGAAAAGGAAAGATTCAGAGTGTCACTCAGCTTCATGATGGATCAGCCCTCTTTGTTACAGTGGCAAAATATGTATCACCAGCCCTTCATGACATAGATCAGGTCGGGATAACGCCAGACGTTCAGTGCACGACAGAAATGCTTTCACCAAAGGAACTATCAACCAAAGATAAGGCCTCAATCTCATCTCTGGAAGCAGATTCATGCATCATGGTAGCAGAACATGAGTTGGATATGAAGGATTCCAAAGGGACTGTTTCTTGA

Protein sequence

>Msa0160650

MMNFDVKARINIPPKVPKPNLVGLFPRRLWLLPTTTWASRKRKVSFEVEEKEVNKVVVVEGIESVAKSAFRFGFSAALSFCIFCHAPTALSQSLTVAFPVSRAPEVNAVQRTLVEAWGLIRETFVDPTFNHQDWDMKLQQTMVEMFPLNSADAAYTKISGMLSTLGDPFTRIISPKVVLSCIENSPAARAGIHQGDELVEINGERLNGIDSEGAAQRLRGNAGTTVTVKVKDSSRNSYIREVKLPREYIKLSPISSAIIPHRSSEGQVIKTGYVKLSTFSQEMKNQGAHSFILDLRNNPGGLVKAGLDVAQMWLDGDETLVNTIDRDGNMSPINMINGHAITHDPLVVIVNEGSASASEILAGALHDNGRAILVGNKTFGKGKIQSVTQLHDGSALFVTVAKYVSPALHDIDQVGITPDVQCTTEMLSPKELSTKDKASISSLEADSCIMVAEHELDMKDSKGTVS*