AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384970 MtrunA17_Chr1g0204771 97.326 187 5 0 1 187 1 187 3.49e-136 378
Msa1384970 MtrunA17_Chr1g0204751 65.730 178 61 0 2 179 12 189 3.94e-91 265
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384970 AT5G43850.1 78.610 187 40 0 1 187 1 187 1.97e-110 313
Msa1384970 AT2G26400.3 65.000 180 63 0 2 181 27 206 1.00e-89 262
Msa1384970 AT2G26400.1 65.000 180 63 0 2 181 12 191 1.29e-89 261
Msa1384970 AT4G14710.5 63.842 177 64 0 2 178 14 190 1.39e-89 261
Msa1384970 AT4G14710.2 63.842 177 64 0 2 178 12 188 1.69e-89 261
Msa1384970 AT4G14710.1 63.842 177 64 0 2 178 12 188 1.69e-89 261
Msa1384970 AT4G14716.1 64.535 172 61 0 2 173 12 183 4.95e-88 256
Msa1384970 AT4G14710.3 63.483 178 64 1 2 178 12 189 9.51e-88 256
Msa1384970 AT2G26400.2 67.262 168 55 0 2 169 27 194 3.03e-87 256
Msa1384970 AT2G26400.4 67.262 168 55 0 2 169 12 179 3.39e-87 255
Msa1384970 AT4G14710.4 64.881 168 59 0 2 169 12 179 1.27e-86 253
Msa1384970 AT4G14710.6 64.327 171 61 0 8 178 1 171 2.98e-86 252
Msa1384970 AT4G14716.2 65.060 166 58 0 8 173 1 166 1.11e-84 248

Find 52 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAGGTCTTCTCCTCTT+AGG 0.227958 tig0020684:-3214 Msa1384970:intergenic
TGCTAGAAAGGAATACATTA+AGG 0.274694 tig0020684:+3056 Msa1384970:CDS
TGATCATTCTCATAGTCATT+AGG 0.279982 tig0020684:-1822 Msa1384970:intergenic
ATGATTAATAACCTGCTAAT+TGG 0.292079 tig0020684:-1700 Msa1384970:intergenic
GATCATTCTCATAGTCATTA+GGG 0.297534 tig0020684:-1821 Msa1384970:intergenic
GCAGTTAATGAGGTTGTTTA+TGG 0.306900 tig0020684:+2987 Msa1384970:intron
CCCCAATGAATTTGTTTCCT+TGG 0.318267 tig0020684:+1676 Msa1384970:CDS
CAGAATTGGGAGTCTTATAC+TGG 0.335864 tig0020684:+1790 Msa1384970:intron
GTCCAAGGAAACAAATTCAT+TGG 0.347689 tig0020684:-1678 Msa1384970:intergenic
TGAAGAGATTCGTTACTGTT+TGG 0.363134 tig0020684:+2653 Msa1384970:CDS
ATGGTCTGTAATGGAACTAT+TGG 0.364258 tig0020684:+3169 Msa1384970:three_prime_UTR
CTTCGATGTTCGAGACAAAA+AGG 0.370547 tig0020684:+2689 Msa1384970:CDS
TGTGCCACTTGCAGCTCATT+AGG 0.372112 tig0020684:+3098 Msa1384970:CDS
AGGATCGCTGGATTCGCATT+TGG 0.387790 tig0020684:+2709 Msa1384970:CDS
TCCAAGGAAACAAATTCATT+GGG 0.393021 tig0020684:-1677 Msa1384970:intergenic
TACCATGTAATTGTATCCTC+TGG 0.413679 tig0020684:-1868 Msa1384970:intergenic
TATAACTTTATGGTCTGTAA+TGG 0.414692 tig0020684:+3160 Msa1384970:three_prime_UTR
TTAATGTATTCCTTTCTAGC+AGG 0.416178 tig0020684:-3054 Msa1384970:intergenic
CTGGATTCGCATTTGGATCA+AGG 0.420712 tig0020684:+2716 Msa1384970:CDS
CAGTTAATGAGGTTGTTTAT+GGG 0.429331 tig0020684:+2988 Msa1384970:intron
GCTAGAAAGGAATACATTAA+GGG 0.444455 tig0020684:+3057 Msa1384970:CDS
GGAAGATAACCCTGCTAGAA+AGG 0.448092 tig0020684:+3044 Msa1384970:CDS
ATATAGGTCTTCTCCTCTTA+GGG 0.453246 tig0020684:-3213 Msa1384970:intergenic
ATTGTGATAGGCATGGTTCA+TGG 0.474686 tig0020684:+1613 Msa1384970:intron
GTTTCCTTGGACCAATTAGC+AGG 0.487915 tig0020684:+1689 Msa1384970:CDS
CTACACTGAGCACATTCATC+AGG 0.491343 tig0020684:+2629 Msa1384970:CDS
CGTTACTGTTTGGAGGGAAG+TGG 0.493451 tig0020684:+2663 Msa1384970:CDS
AAGGGCTTGACTGAGAAAAC+TGG 0.495479 tig0020684:+3075 Msa1384970:CDS
TAGCCATGGTGAGGAAGTCT+TGG 0.507430 tig0020684:-1653 Msa1384970:intergenic
AGAGATTCGTTACTGTTTGG+AGG 0.508489 tig0020684:+2656 Msa1384970:CDS
TAATGTATTCCTTTCTAGCA+GGG 0.526328 tig0020684:-3053 Msa1384970:intergenic
ATTCGCATTTGGATCAAGGC+TGG 0.542481 tig0020684:+2720 Msa1384970:CDS
AACCGATGGTAGATTCCTGC+AGG 0.545163 tig0020684:-2759 Msa1384970:intergenic
GGATTTACTTGATTTATGCC+CGG 0.551505 tig0020684:+2569 Msa1384970:intron
CAAATTCATTGGGGTAGCCA+TGG 0.553222 tig0020684:-1667 Msa1384970:intergenic
GAGATTCGTTACTGTTTGGA+GGG 0.561571 tig0020684:+2657 Msa1384970:CDS
GAGGTTGTTTATGGGTGAGC+CGG 0.570174 tig0020684:+2996 Msa1384970:CDS
ATTGTTACTCATGGCGATTG+AGG 0.572796 tig0020684:+1524 Msa1384970:exon
CTAGCAGGGTTATCTTCCTG+TGG 0.575444 tig0020684:-3039 Msa1384970:intergenic
TACCTGCAGGAATCTACCAT+CGG 0.576810 tig0020684:+2757 Msa1384970:CDS
CGATTATATGCTGTCCACAC+CGG 0.591841 tig0020684:-3015 Msa1384970:intergenic
CGACACAAATAACTATGTGA+AGG 0.598188 tig0020684:+2788 Msa1384970:CDS
ATAACCTGCTAATTGGTCCA+AGG 0.599536 tig0020684:-1693 Msa1384970:intergenic
TTGTGTCGAGAGTGAACCGA+TGG 0.605251 tig0020684:-2773 Msa1384970:intergenic
TGTTTATGGGTGAGCCGGTG+TGG 0.615047 tig0020684:+3001 Msa1384970:CDS
AGCCAGAGGATACAATTACA+TGG 0.637470 tig0020684:+1866 Msa1384970:CDS
GACAGCATATAATCGACCAC+AGG 0.646228 tig0020684:+3023 Msa1384970:CDS
GGGTCCTAATGAGCTGCAAG+TGG 0.648299 tig0020684:-3102 Msa1384970:intergenic
TCATTGGGGTAGCCATGGTG+AGG 0.672207 tig0020684:-1662 Msa1384970:intergenic
GATCCAAGACTTCCTCACCA+TGG 0.679886 tig0020684:+1650 Msa1384970:CDS
AAGAACATTAGAGAAGCCAG+AGG 0.683987 tig0020684:+1852 Msa1384970:CDS
CCAAGGAAACAAATTCATTG+GGG 0.686962 tig0020684:-1676 Msa1384960:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTAAGATTAATTCATA+AGG - tig0020684:1568-1587 Msa1384970:intergenic 10.0%
!! TAATAATTAAAAATTGTGAT+AGG + tig0020684:1601-1620 Msa1384970:intron 10.0%
!! ATTATCTAATATATTGTAAA+CGG + tig0020684:2079-2098 Msa1384970:intron 10.0%
!! TATATTAAGATTAATTCATA+AGG - tig0020684:1568-1587 Msa1384970:intergenic 10.0%
!! TAATAATTAAAAATTGTGAT+AGG + tig0020684:1601-1620 Msa1384970:intron 10.0%
!! ATTATCTAATATATTGTAAA+CGG + tig0020684:2079-2098 Msa1384970:intron 10.0%
!!! AATTTTAATTTTTGCAGAAT+TGG + tig0020684:1776-1795 Msa1384970:intron 15.0%
!!! ATTTTAATTTTTGCAGAATT+GGG + tig0020684:1777-1796 Msa1384970:intron 15.0%
!! TAAAAAAAACATGTTAAAAC+AGG + tig0020684:2041-2060 Msa1384970:intron 15.0%
!! AATTAGTTGAAAATAACTTA+CGG + tig0020684:2293-2312 Msa1384970:intron 15.0%
!!! TTTTAGACATTATAACTTTA+TGG + tig0020684:3150-3169 Msa1384970:three_prime_UTR 15.0%
!!! AATTTTAATTTTTGCAGAAT+TGG + tig0020684:1776-1795 Msa1384970:intron 15.0%
!!! ATTTTAATTTTTGCAGAATT+GGG + tig0020684:1777-1796 Msa1384970:intron 15.0%
!! TAAAAAAAACATGTTAAAAC+AGG + tig0020684:2041-2060 Msa1384970:intron 15.0%
!! AATTAGTTGAAAATAACTTA+CGG + tig0020684:2293-2312 Msa1384970:intron 15.0%
!!! TTTTAGACATTATAACTTTA+TGG + tig0020684:3150-3169 Msa1384970:three_prime_UTR 15.0%
!!! ACAATTTTTTAGTAGTTTAC+TGG - tig0020684:1509-1528 Msa0483230:intergenic 20.0%
!! TACTAAAAAATTGTTACTCA+TGG + tig0020684:1515-1534 Msa1384970:exon 20.0%
!!! TAACATGTTTTTTTTACATG+TGG - tig0020684:2037-2056 Msa1384970:intergenic 20.0%
!! TTTGTTGATGTAAATTTCTT+AGG + tig0020684:2112-2131 Msa1384970:intron 20.0%
!!! ATTTTGATTGTACTAATTGA+AGG + tig0020684:2465-2484 Msa1384970:intron 20.0%
!!! TTTTGATTGTACTAATTGAA+GGG + tig0020684:2466-2485 Msa1384970:intron 20.0%
!!! TCATAATTTTCAACTTTTTC+CGG - tig0020684:2591-2610 Msa1384970:intergenic 20.0%
!!! TATAGTTGCATAGATTTTAA+GGG - tig0020684:3125-3144 Msa1384970:intergenic 20.0%
!!! ATATAGTTGCATAGATTTTA+AGG - tig0020684:3126-3145 Msa1384970:intergenic 20.0%
!!! TTTTAGGTTCATAGATATAT+AGG - tig0020684:3232-3251 Msa1384970:intergenic 20.0%
!!! ACAATTTTTTAGTAGTTTAC+TGG - tig0020684:1509-1528 Msa1384970:intergenic 20.0%
!! TACTAAAAAATTGTTACTCA+TGG + tig0020684:1515-1534 Msa1384970:exon 20.0%
!!! TAACATGTTTTTTTTACATG+TGG - tig0020684:2037-2056 Msa1384970:intergenic 20.0%
!! TTTGTTGATGTAAATTTCTT+AGG + tig0020684:2112-2131 Msa1384970:intron 20.0%
!!! ATTTTGATTGTACTAATTGA+AGG + tig0020684:2465-2484 Msa1384970:intron 20.0%
!!! TTTTGATTGTACTAATTGAA+GGG + tig0020684:2466-2485 Msa1384970:intron 20.0%
!!! TCATAATTTTCAACTTTTTC+CGG - tig0020684:2591-2610 Msa1384970:intergenic 20.0%
!!! TATAGTTGCATAGATTTTAA+GGG - tig0020684:3125-3144 Msa1384970:intergenic 20.0%
!!! ATATAGTTGCATAGATTTTA+AGG - tig0020684:3126-3145 Msa1384970:intergenic 20.0%
!!! TTTTAGGTTCATAGATATAT+AGG - tig0020684:3232-3251 Msa1384970:intergenic 20.0%
! ATTAAAAATTGTGATAGGCA+TGG + tig0020684:1606-1625 Msa1384970:intron 25.0%
! ATGATTAATAACCTGCTAAT+TGG - tig0020684:1703-1722 Msa1384970:intergenic 25.0%
!! TTTCTAGTGATACAATTACA+TGG + tig0020684:1952-1971 Msa1384970:intron 25.0%
! TTACATCAACAAAAATCTGA+AGG - tig0020684:2105-2124 Msa1384970:intergenic 25.0%
!! AAGTTATCTTTGAGAGTTTA+TGG + tig0020684:2269-2288 Msa1384970:intron 25.0%
! ATAGCTTATGAAAACAACTT+TGG - tig0020684:2324-2343 Msa1384970:intergenic 25.0%
! ATTTCATCTTTCAAATGTTC+TGG + tig0020684:2491-2510 Msa1384970:intron 25.0%
! TTTCATCTTTCAAATGTTCT+GGG + tig0020684:2492-2511 Msa1384970:intron 25.0%
! GTACTATTTGAATATGTTGT+AGG + tig0020684:2548-2567 Msa1384970:intron 25.0%
!!! CATAATTTTCAACTTTTTCC+GGG - tig0020684:2590-2609 Msa1384970:intergenic 25.0%
! TTGAAATTGATCAAGATTCA+AGG + tig0020684:2905-2924 Msa1384970:intron 25.0%
! TATAACTTTATGGTCTGTAA+TGG + tig0020684:3160-3179 Msa1384970:three_prime_UTR 25.0%
! AACCTAAAACAGATAAAGTA+TGG + tig0020684:3243-3262 Msa1384970:intron 25.0%
! ACCTAAAACAGATAAAGTAT+GGG + tig0020684:3244-3263 Msa1384970:intron 25.0%
! ATTAAAAATTGTGATAGGCA+TGG + tig0020684:1606-1625 Msa1384970:intron 25.0%
! ATGATTAATAACCTGCTAAT+TGG - tig0020684:1703-1722 Msa1384970:intergenic 25.0%
!! TTTCTAGTGATACAATTACA+TGG + tig0020684:1952-1971 Msa1384970:intron 25.0%
! TTACATCAACAAAAATCTGA+AGG - tig0020684:2105-2124 Msa1384970:intergenic 25.0%
!! AAGTTATCTTTGAGAGTTTA+TGG + tig0020684:2269-2288 Msa1384970:intron 25.0%
! ATAGCTTATGAAAACAACTT+TGG - tig0020684:2324-2343 Msa1384970:intergenic 25.0%
! ATTTCATCTTTCAAATGTTC+TGG + tig0020684:2491-2510 Msa1384970:intron 25.0%
! TTTCATCTTTCAAATGTTCT+GGG + tig0020684:2492-2511 Msa1384970:intron 25.0%
! GTACTATTTGAATATGTTGT+AGG + tig0020684:2548-2567 Msa1384970:intron 25.0%
!!! CATAATTTTCAACTTTTTCC+GGG - tig0020684:2590-2609 Msa1384970:intergenic 25.0%
! TTGAAATTGATCAAGATTCA+AGG + tig0020684:2905-2924 Msa1384970:intron 25.0%
! TATAACTTTATGGTCTGTAA+TGG + tig0020684:3160-3179 Msa1384970:three_prime_UTR 25.0%
! AACCTAAAACAGATAAAGTA+TGG + tig0020684:3243-3262 Msa1384970:intron 25.0%
! ACCTAAAACAGATAAAGTAT+GGG + tig0020684:3244-3263 Msa1384970:intron 25.0%
TCCAAGGAAACAAATTCATT+GGG - tig0020684:1680-1699 Msa1384970:intergenic 30.0%
TTTATTGTGACACAAGTTTG+AGG + tig0020684:1750-1769 Msa1384970:intron 30.0%
TTATTGTGACACAAGTTTGA+GGG + tig0020684:1751-1770 Msa1384970:intron 30.0%
GATCATTCTCATAGTCATTA+GGG - tig0020684:1824-1843 Msa1384970:intergenic 30.0%
TGATCATTCTCATAGTCATT+AGG - tig0020684:1825-1844 Msa1384970:intergenic 30.0%
TTACATGGTAAGATTGAAAG+TGG + tig0020684:1967-1986 Msa1384970:intron 30.0%
!!! TGAAAGTGGATTTTTTCTTG+TGG + tig0020684:1981-2000 Msa1384970:intron 30.0%
!!! GAAAGTGGATTTTTTCTTGT+GGG + tig0020684:1982-2001 Msa1384970:intron 30.0%
ATAAGTTGTTTACCTAACAG+TGG - tig0020684:2166-2185 Msa1384970:intergenic 30.0%
GAGCTCAAATAAGTCAATTT+AGG + tig0020684:2379-2398 Msa1384970:intron 30.0%
GTACAATCAAAATGTTCAAC+AGG - tig0020684:2458-2477 Msa1384970:intergenic 30.0%
CCTTGATCAAGAATATTGAT+AGG - tig0020684:2822-2841 Msa1384970:intergenic 30.0%
CCTATCAATATTCTTGATCA+AGG + tig0020684:2819-2838 Msa1384970:intron 30.0%
!! TTGATCAAGGCTTCATTTTT+GGG + tig0020684:2832-2851 Msa1384970:intron 30.0%
CAAGATTCAAGGTAATATGT+TGG + tig0020684:2916-2935 Msa1384970:intron 30.0%
CAGTTAATGAGGTTGTTTAT+GGG + tig0020684:2988-3007 Msa1384970:intron 30.0%
! TAATGTATTCCTTTCTAGCA+GGG - tig0020684:3056-3075 Msa1384970:intergenic 30.0%
! TTAATGTATTCCTTTCTAGC+AGG - tig0020684:3057-3076 Msa1384970:intergenic 30.0%
TGCTAGAAAGGAATACATTA+AGG + tig0020684:3056-3075 Msa1384970:CDS 30.0%
GCTAGAAAGGAATACATTAA+GGG + tig0020684:3057-3076 Msa1384970:CDS 30.0%
! TGTATAGATTTTACCCTAAG+AGG + tig0020684:3200-3219 Msa1384970:three_prime_UTR 30.0%
! TCCCATACTTTATCTGTTTT+AGG - tig0020684:3248-3267 Msa1384970:intergenic 30.0%
TCCAAGGAAACAAATTCATT+GGG - tig0020684:1680-1699 Msa1384970:intergenic 30.0%
TTTATTGTGACACAAGTTTG+AGG + tig0020684:1750-1769 Msa1384970:intron 30.0%
TTATTGTGACACAAGTTTGA+GGG + tig0020684:1751-1770 Msa1384970:intron 30.0%
GATCATTCTCATAGTCATTA+GGG - tig0020684:1824-1843 Msa1384970:intergenic 30.0%
TGATCATTCTCATAGTCATT+AGG - tig0020684:1825-1844 Msa1384970:intergenic 30.0%
TTACATGGTAAGATTGAAAG+TGG + tig0020684:1967-1986 Msa1384970:intron 30.0%
!!! TGAAAGTGGATTTTTTCTTG+TGG + tig0020684:1981-2000 Msa1384970:intron 30.0%
!!! GAAAGTGGATTTTTTCTTGT+GGG + tig0020684:1982-2001 Msa1384970:intron 30.0%
ATAAGTTGTTTACCTAACAG+TGG - tig0020684:2166-2185 Msa1384970:intergenic 30.0%
GAGCTCAAATAAGTCAATTT+AGG + tig0020684:2379-2398 Msa1384970:intron 30.0%
GTACAATCAAAATGTTCAAC+AGG - tig0020684:2458-2477 Msa1384970:intergenic 30.0%
CCTTGATCAAGAATATTGAT+AGG - tig0020684:2822-2841 Msa1384970:intergenic 30.0%
CCTATCAATATTCTTGATCA+AGG + tig0020684:2819-2838 Msa1384970:intron 30.0%
!! TTGATCAAGGCTTCATTTTT+GGG + tig0020684:2832-2851 Msa1384970:intron 30.0%
CAAGATTCAAGGTAATATGT+TGG + tig0020684:2916-2935 Msa1384970:intron 30.0%
CAGTTAATGAGGTTGTTTAT+GGG + tig0020684:2988-3007 Msa1384970:intron 30.0%
! TAATGTATTCCTTTCTAGCA+GGG - tig0020684:3056-3075 Msa1384970:intergenic 30.0%
! TTAATGTATTCCTTTCTAGC+AGG - tig0020684:3057-3076 Msa1384970:intergenic 30.0%
TGCTAGAAAGGAATACATTA+AGG + tig0020684:3056-3075 Msa1384970:CDS 30.0%
GCTAGAAAGGAATACATTAA+GGG + tig0020684:3057-3076 Msa1384970:CDS 30.0%
! TGTATAGATTTTACCCTAAG+AGG + tig0020684:3200-3219 Msa1384970:three_prime_UTR 30.0%
! TCCCATACTTTATCTGTTTT+AGG - tig0020684:3248-3267 Msa1384970:intergenic 30.0%
CCAAGGAAACAAATTCATTG+GGG - tig0020684:1679-1698 Msa1384970:intergenic 35.0%
GTCCAAGGAAACAAATTCAT+TGG - tig0020684:1681-1700 Msa1384970:intergenic 35.0%
TACCATGTAATTGTATCCTC+TGG - tig0020684:1871-1890 Msa1384970:intergenic 35.0%
ACTTATTTGAGCTCATCTAC+CGG - tig0020684:2373-2392 Msa1384970:intergenic 35.0%
GGATTTACTTGATTTATGCC+CGG + tig0020684:2569-2588 Msa1384970:intron 35.0%
TGAAGAGATTCGTTACTGTT+TGG + tig0020684:2653-2672 Msa1384970:CDS 35.0%
! GATCTTATCATTTTACCTGC+AGG + tig0020684:2744-2763 Msa1384970:CDS 35.0%
CGACACAAATAACTATGTGA+AGG + tig0020684:2788-2807 Msa1384970:CDS 35.0%
! CTTGATCAAGGCTTCATTTT+TGG + tig0020684:2831-2850 Msa1384970:intron 35.0%
TTGTTCGATGCATATGTATG+TGG + tig0020684:2958-2977 Msa1384970:intron 35.0%
GCAGTTAATGAGGTTGTTTA+TGG + tig0020684:2987-3006 Msa1384970:intron 35.0%
! ATGGTCTGTAATGGAACTAT+TGG + tig0020684:3169-3188 Msa1384970:three_prime_UTR 35.0%
ATATAGGTCTTCTCCTCTTA+GGG - tig0020684:3216-3235 Msa1384970:intergenic 35.0%
TATATAGGTCTTCTCCTCTT+AGG - tig0020684:3217-3236 Msa1384970:intergenic 35.0%
CCAAGGAAACAAATTCATTG+GGG - tig0020684:1679-1698 Msa1384970:intergenic 35.0%
GTCCAAGGAAACAAATTCAT+TGG - tig0020684:1681-1700 Msa1384970:intergenic 35.0%
TACCATGTAATTGTATCCTC+TGG - tig0020684:1871-1890 Msa1384970:intergenic 35.0%
ACTTATTTGAGCTCATCTAC+CGG - tig0020684:2373-2392 Msa1384970:intergenic 35.0%
GGATTTACTTGATTTATGCC+CGG + tig0020684:2569-2588 Msa1384970:intron 35.0%
TGAAGAGATTCGTTACTGTT+TGG + tig0020684:2653-2672 Msa1384970:CDS 35.0%
! GATCTTATCATTTTACCTGC+AGG + tig0020684:2744-2763 Msa1384970:CDS 35.0%
CGACACAAATAACTATGTGA+AGG + tig0020684:2788-2807 Msa1384970:CDS 35.0%
! CTTGATCAAGGCTTCATTTT+TGG + tig0020684:2831-2850 Msa1384970:intron 35.0%
TTGTTCGATGCATATGTATG+TGG + tig0020684:2958-2977 Msa1384970:intron 35.0%
GCAGTTAATGAGGTTGTTTA+TGG + tig0020684:2987-3006 Msa1384970:intron 35.0%
! ATGGTCTGTAATGGAACTAT+TGG + tig0020684:3169-3188 Msa1384970:three_prime_UTR 35.0%
ATATAGGTCTTCTCCTCTTA+GGG - tig0020684:3216-3235 Msa1384970:intergenic 35.0%
TATATAGGTCTTCTCCTCTT+AGG - tig0020684:3217-3236 Msa1384970:intergenic 35.0%
ATTGTTACTCATGGCGATTG+AGG + tig0020684:1524-1543 Msa1384970:exon 40.0%
ATTGTGATAGGCATGGTTCA+TGG + tig0020684:1613-1632 Msa1384970:intron 40.0%
! CCCCAATGAATTTGTTTCCT+TGG + tig0020684:1676-1695 Msa1384970:CDS 40.0%
ATAACCTGCTAATTGGTCCA+AGG - tig0020684:1696-1715 Msa1384970:intergenic 40.0%
! CAGAATTGGGAGTCTTATAC+TGG + tig0020684:1790-1809 Msa1384970:intron 40.0%
AAGAACATTAGAGAAGCCAG+AGG + tig0020684:1852-1871 Msa1384970:CDS 40.0%
AGCCAGAGGATACAATTACA+TGG + tig0020684:1866-1885 Msa1384970:CDS 40.0%
AGTCTCGCAAATACTTATGC+CGG + tig0020684:2351-2370 Msa1384970:intron 40.0%
AGAGATTCGTTACTGTTTGG+AGG + tig0020684:2656-2675 Msa1384970:CDS 40.0%
GAGATTCGTTACTGTTTGGA+GGG + tig0020684:2657-2676 Msa1384970:CDS 40.0%
CTTCGATGTTCGAGACAAAA+AGG + tig0020684:2689-2708 Msa1384970:CDS 40.0%
!!! AAGGCTTCATTTTTGGGATG+TGG + tig0020684:2838-2857 Msa1384970:intron 40.0%
!!! GTGGTTTTGTGCAGTTAATG+AGG + tig0020684:2977-2996 Msa1384970:intron 40.0%
ATTGTTACTCATGGCGATTG+AGG + tig0020684:1524-1543 Msa1384970:exon 40.0%
ATTGTGATAGGCATGGTTCA+TGG + tig0020684:1613-1632 Msa1384970:intron 40.0%
! CCCCAATGAATTTGTTTCCT+TGG + tig0020684:1676-1695 Msa1384970:CDS 40.0%
ATAACCTGCTAATTGGTCCA+AGG - tig0020684:1696-1715 Msa1384970:intergenic 40.0%
! CAGAATTGGGAGTCTTATAC+TGG + tig0020684:1790-1809 Msa1384970:intron 40.0%
AAGAACATTAGAGAAGCCAG+AGG + tig0020684:1852-1871 Msa1384970:CDS 40.0%
AGCCAGAGGATACAATTACA+TGG + tig0020684:1866-1885 Msa1384970:CDS 40.0%
AGTCTCGCAAATACTTATGC+CGG + tig0020684:2351-2370 Msa1384970:intron 40.0%
AGAGATTCGTTACTGTTTGG+AGG + tig0020684:2656-2675 Msa1384970:CDS 40.0%
GAGATTCGTTACTGTTTGGA+GGG + tig0020684:2657-2676 Msa1384970:CDS 40.0%
CTTCGATGTTCGAGACAAAA+AGG + tig0020684:2689-2708 Msa1384970:CDS 40.0%
!!! AAGGCTTCATTTTTGGGATG+TGG + tig0020684:2838-2857 Msa1384970:intron 40.0%
!!! GTGGTTTTGTGCAGTTAATG+AGG + tig0020684:2977-2996 Msa1384970:intron 40.0%
CAAATTCATTGGGGTAGCCA+TGG - tig0020684:1670-1689 Msa1384970:intergenic 45.0%
GTTTCCTTGGACCAATTAGC+AGG + tig0020684:1689-1708 Msa1384970:CDS 45.0%
CTACACTGAGCACATTCATC+AGG + tig0020684:2629-2648 Msa1384970:CDS 45.0%
TTCGAGACAAAAAGGATCGC+TGG + tig0020684:2697-2716 Msa1384970:CDS 45.0%
CTGGATTCGCATTTGGATCA+AGG + tig0020684:2716-2735 Msa1384970:CDS 45.0%
ATTCGCATTTGGATCAAGGC+TGG + tig0020684:2720-2739 Msa1384970:CDS 45.0%
TACCTGCAGGAATCTACCAT+CGG + tig0020684:2757-2776 Msa1384970:CDS 45.0%
CGATTATATGCTGTCCACAC+CGG - tig0020684:3018-3037 Msa1384970:intergenic 45.0%
GACAGCATATAATCGACCAC+AGG + tig0020684:3023-3042 Msa1384970:CDS 45.0%
GGAAGATAACCCTGCTAGAA+AGG + tig0020684:3044-3063 Msa1384970:CDS 45.0%
AAGGGCTTGACTGAGAAAAC+TGG + tig0020684:3075-3094 Msa1384970:CDS 45.0%
CAAATTCATTGGGGTAGCCA+TGG - tig0020684:1670-1689 Msa1384970:intergenic 45.0%
GTTTCCTTGGACCAATTAGC+AGG + tig0020684:1689-1708 Msa1384970:CDS 45.0%
CTACACTGAGCACATTCATC+AGG + tig0020684:2629-2648 Msa1384970:CDS 45.0%
TTCGAGACAAAAAGGATCGC+TGG + tig0020684:2697-2716 Msa1384970:CDS 45.0%
CTGGATTCGCATTTGGATCA+AGG + tig0020684:2716-2735 Msa1384970:CDS 45.0%
ATTCGCATTTGGATCAAGGC+TGG + tig0020684:2720-2739 Msa1384970:CDS 45.0%
TACCTGCAGGAATCTACCAT+CGG + tig0020684:2757-2776 Msa1384970:CDS 45.0%
CGATTATATGCTGTCCACAC+CGG - tig0020684:3018-3037 Msa1384970:intergenic 45.0%
GACAGCATATAATCGACCAC+AGG + tig0020684:3023-3042 Msa1384970:CDS 45.0%
GGAAGATAACCCTGCTAGAA+AGG + tig0020684:3044-3063 Msa1384970:CDS 45.0%
AAGGGCTTGACTGAGAAAAC+TGG + tig0020684:3075-3094 Msa1384970:CDS 45.0%
GATCCAAGACTTCCTCACCA+TGG + tig0020684:1650-1669 Msa1384970:CDS 50.0%
TAGCCATGGTGAGGAAGTCT+TGG - tig0020684:1656-1675 Msa1384970:intergenic 50.0%
TTAGCAGCAACGCCACTGTT+AGG + tig0020684:2151-2170 Msa1384970:intron 50.0%
CGTTACTGTTTGGAGGGAAG+TGG + tig0020684:2663-2682 Msa1384970:CDS 50.0%
AGGATCGCTGGATTCGCATT+TGG + tig0020684:2709-2728 Msa1384970:CDS 50.0%
AACCGATGGTAGATTCCTGC+AGG - tig0020684:2762-2781 Msa1384970:intergenic 50.0%
TTGTGTCGAGAGTGAACCGA+TGG - tig0020684:2776-2795 Msa1384970:intergenic 50.0%
GAGGTTGTTTATGGGTGAGC+CGG + tig0020684:2996-3015 Msa1384970:CDS 50.0%
CTAGCAGGGTTATCTTCCTG+TGG - tig0020684:3042-3061 Msa1384970:intergenic 50.0%
!! TGTGCCACTTGCAGCTCATT+AGG + tig0020684:3098-3117 Msa1384970:CDS 50.0%
GATCCAAGACTTCCTCACCA+TGG + tig0020684:1650-1669 Msa1384970:CDS 50.0%
TAGCCATGGTGAGGAAGTCT+TGG - tig0020684:1656-1675 Msa1384970:intergenic 50.0%
TTAGCAGCAACGCCACTGTT+AGG + tig0020684:2151-2170 Msa1384970:intron 50.0%
CGTTACTGTTTGGAGGGAAG+TGG + tig0020684:2663-2682 Msa1384970:CDS 50.0%
AGGATCGCTGGATTCGCATT+TGG + tig0020684:2709-2728 Msa1384970:CDS 50.0%
AACCGATGGTAGATTCCTGC+AGG - tig0020684:2762-2781 Msa1384970:intergenic 50.0%
TTGTGTCGAGAGTGAACCGA+TGG - tig0020684:2776-2795 Msa1384970:intergenic 50.0%
GAGGTTGTTTATGGGTGAGC+CGG + tig0020684:2996-3015 Msa1384970:CDS 50.0%
CTAGCAGGGTTATCTTCCTG+TGG - tig0020684:3042-3061 Msa1384970:intergenic 50.0%
!! TGTGCCACTTGCAGCTCATT+AGG + tig0020684:3098-3117 Msa1384970:CDS 50.0%
TCATTGGGGTAGCCATGGTG+AGG - tig0020684:1665-1684 Msa1384970:intergenic 55.0%
TGTTTATGGGTGAGCCGGTG+TGG + tig0020684:3001-3020 Msa1384970:CDS 55.0%
GGGTCCTAATGAGCTGCAAG+TGG - tig0020684:3105-3124 Msa1384970:intergenic 55.0%
TCATTGGGGTAGCCATGGTG+AGG - tig0020684:1665-1684 Msa1384970:intergenic 55.0%
TGTTTATGGGTGAGCCGGTG+TGG + tig0020684:3001-3020 Msa1384970:CDS 55.0%
GGGTCCTAATGAGCTGCAAG+TGG - tig0020684:3105-3124 Msa1384970:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0020684 gene 1421 3417 1421 ID=Msa1384970;Name=Msa1384970
tig0020684 mRNA 1421 3417 1421 ID=Msa1384970-mRNA-1;Parent=Msa1384970;Name=Msa1384970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=113|1|1|1|0.8|0.66|6|246|187
tig0020684 exon 1421 1545 1421 ID=Msa1384970-mRNA-1:exon:9374;Parent=Msa1384970-mRNA-1
tig0020684 exon 1623 1710 1623 ID=Msa1384970-mRNA-1:exon:9375;Parent=Msa1384970-mRNA-1
tig0020684 exon 1793 1887 1793 ID=Msa1384970-mRNA-1:exon:9376;Parent=Msa1384970-mRNA-1
tig0020684 exon 2570 2809 2570 ID=Msa1384970-mRNA-1:exon:9377;Parent=Msa1384970-mRNA-1
tig0020684 exon 2991 3259 2991 ID=Msa1384970-mRNA-1:exon:9378;Parent=Msa1384970-mRNA-1
tig0020684 exon 3312 3417 3312 ID=Msa1384970-mRNA-1:exon:9379;Parent=Msa1384970-mRNA-1
tig0020684 five_prime_UTR 1421 1533 1421 ID=Msa1384970-mRNA-1:five_prime_utr;Parent=Msa1384970-mRNA-1
tig0020684 CDS 1534 1545 1534 ID=Msa1384970-mRNA-1:cds;Parent=Msa1384970-mRNA-1
tig0020684 CDS 1623 1710 1623 ID=Msa1384970-mRNA-1:cds;Parent=Msa1384970-mRNA-1
tig0020684 CDS 1793 1887 1793 ID=Msa1384970-mRNA-1:cds;Parent=Msa1384970-mRNA-1
tig0020684 CDS 2570 2809 2570 ID=Msa1384970-mRNA-1:cds;Parent=Msa1384970-mRNA-1
tig0020684 CDS 2991 3119 2991 ID=Msa1384970-mRNA-1:cds;Parent=Msa1384970-mRNA-1
tig0020684 three_prime_UTR 3120 3259 3120 ID=Msa1384970-mRNA-1:three_prime_utr;Parent=Msa1384970-mRNA-1
tig0020684 three_prime_UTR 3312 3417 3312 ID=Msa1384970-mRNA-1:three_prime_utr;Parent=Msa1384970-mRNA-1
Gene Sequence

>Msa1384970

ATGGCGATTGAGGCATGGTTCATGGACAATAGCAATGAAGATCCAAGACTTCCTCACCATGGCTACCCCAATGAATTTGTTTCCTTGGACCAATTAGCAGAATTGGGAGTCTTATACTGGAAGCTGAACCCTAATGACTATGAGAATGATCAAGAATTGAAGAACATTAGAGAAGCCAGAGGATACAATTACATGGATTTACTTGATTTATGCCCGGAAAAAGTTGAAAATTATGAAGAGAAGTTGAAGAACTTCTACACTGAGCACATTCATCAGGATGAAGAGATTCGTTACTGTTTGGAGGGAAGTGGCTACTTCGATGTTCGAGACAAAAAGGATCGCTGGATTCGCATTTGGATCAAGGCTGGTGATCTTATCATTTTACCTGCAGGAATCTACCATCGGTTCACTCTCGACACAAATAACTATGTGAAGTTAATGAGGTTGTTTATGGGTGAGCCGGTGTGGACAGCATATAATCGACCACAGGAAGATAACCCTGCTAGAAAGGAATACATTAAGGGCTTGACTGAGAAAACTGGTGTGCCACTTGCAGCTCATTAG

Protein sequence

>Msa1384970

MAIEAWFMDNSNEDPRLPHHGYPNEFVSLDQLAELGVLYWKLNPNDYENDQELKNIREARGYNYMDLLDLCPEKVENYEEKLKNFYTEHIHQDEEIRYCLEGSGYFDVRDKKDRWIRIWIKAGDLIILPAGIYHRFTLDTNNYVKLMRLFMGEPVWTAYNRPQEDNPARKEYIKGLTEKTGVPLAAH*