AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158450 MtrunA17_Chr7g0253111 95.273 275 11 1 1 275 1 273 0.0 549
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158450 AT2G23840.1 78.453 181 38 1 93 273 99 278 4.37e-106 310

Find 81 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCATTTGTTTAGAGTTTA+TGG 0.065753 7_4:-47857474 Msa1158450:CDS
GTGATGGCTTGTCTGGTTTC+AGG 0.083001 7_4:-47857813 Msa1158450:CDS
AAGAGTTCTGACCGCGAAAA+AGG 0.223811 7_4:-47851531 Msa1158450:CDS
TAAACAATGCTATTCAATAT+TGG 0.260654 7_4:-47851317 Msa1158450:three_prime_UTR
TTTCTTCTTCTATCTATAAT+GGG 0.279334 7_4:-47858204 Msa1158450:five_prime_UTR
AAACAATGCTATTCAATATT+GGG 0.305813 7_4:-47851316 Msa1158450:three_prime_UTR
GTAACTTGTTCTTCTCTTGT+GGG 0.315212 7_4:+47858011 None:intergenic
CTTAGAGCTGCTGCTGTTAG+AGG 0.315554 7_4:+47851551 None:intergenic
TCTATATACCAGCTGTCTTA+AGG 0.324607 7_4:-47857049 Msa1158450:CDS
TCCTTTCTTTGAGTTGCATC+TGG 0.332427 7_4:+47851875 None:intergenic
TTGTGTTGGATATATCTTAC+AGG 0.338812 7_4:-47857786 Msa1158450:intron
CGCTTGAAGCTTCTCTTCAA+TGG 0.357051 7_4:-47858063 Msa1158450:CDS
CTATATACCAGCTGTCTTAA+GGG 0.359416 7_4:-47857048 Msa1158450:intron
CTTAGAACCATGGGTTAGTC+TGG 0.376373 7_4:-47851472 Msa1158450:exon
TGATGGCTTGTCTGGTTTCA+GGG 0.383664 7_4:-47857812 Msa1158450:CDS
TGTAACTTGTTCTTCTCTTG+TGG 0.389234 7_4:+47858010 None:intergenic
TTCATCATGAACACCTTCAC+TGG 0.398644 7_4:+47857897 None:intergenic
TTTGATGGTGATGGCTTGTC+TGG 0.398764 7_4:-47857820 Msa1158450:CDS
CTGCCTAATGTATGTTATGA+TGG 0.406561 7_4:-47851264 Msa1158450:three_prime_UTR
ATTAACATTTCATCATCAAT+TGG 0.407496 7_4:+47851342 None:intergenic
GCGAGAATGTCATAGTCCTT+TGG 0.424618 7_4:+47851578 None:intergenic
CTCCATAAACTCTAAACAAA+TGG 0.426039 7_4:+47857472 None:intergenic
CATTGTCCACCCACTGCAGC+TGG 0.438963 7_4:+47853961 None:intergenic
AAAGAGAATCGTAGCGTGTC+TGG 0.442688 7_4:+47851421 None:intergenic
AACACTTCCCTTTGCTTCTG+AGG 0.456712 7_4:+47857938 None:intergenic
GAAAGGACGAAAGTCCTTAG+AGG 0.463003 7_4:-47851859 Msa1158450:CDS
GATGGCTCAGACCTTCTCAT+TGG 0.466843 7_4:-47851246 Msa1158450:three_prime_UTR
GATGATGATGATGTATTTGA+TGG 0.487363 7_4:-47857835 Msa1158450:CDS
AGATACTGACGCCATTCATC+AGG 0.493348 7_4:+47851503 None:intergenic
TGGTTTCAGGGGTCTTGTGT+TGG 0.497610 7_4:-47857800 Msa1158450:CDS
GGCCAGTCAATGTTGTATGC+TGG 0.505235 7_4:-47857502 Msa1158450:CDS
TTTAAGACTAAATAACCAAA+GGG 0.509409 7_4:-47858111 Msa1158450:five_prime_UTR
TTCTTCTTCTATCTATAATG+GGG 0.511468 7_4:-47858203 Msa1158450:five_prime_UTR
TTCCAGCATACAACATTGAC+TGG 0.512985 7_4:+47857500 None:intergenic
GAGCCATCATAACATACATT+AGG 0.513459 7_4:+47851261 None:intergenic
CAAGTACAAAATATCTCTGT+AGG 0.517369 7_4:-47858163 Msa1158450:five_prime_UTR
TCACGTTGTGCCAGCTGCAG+TGG 0.517496 7_4:-47853971 Msa1158450:CDS
GTGAACTGTGCCATACCCTT+TGG 0.522077 7_4:+47858096 None:intergenic
AGCTGCTGCTGTTAGAGGTA+TGG 0.522365 7_4:+47851556 None:intergenic
TAAGTTCCTCTTAGAACCAT+GGG 0.522559 7_4:-47851481 Msa1158450:exon
AAAAGGGCACACCTGATGAA+TGG 0.523171 7_4:-47851514 Msa1158450:CDS
TCATTGGTATGTAATAGTCT+TGG 0.523560 7_4:-47851230 Msa1158450:three_prime_UTR
TTGTTTAGAGTTTATGGAGA+AGG 0.524127 7_4:-47857468 Msa1158450:intron
GATGGCTTGTCTGGTTTCAG+GGG 0.524722 7_4:-47857811 Msa1158450:CDS
TGGTATATAGAAAGATCCAC+TGG 0.525235 7_4:+47857061 None:intergenic
CTTCATACCTCAGAAGCAAA+GGG 0.531192 7_4:-47857945 Msa1158450:CDS
CAGTGGGTGGACAATGGACA+TGG 0.531472 7_4:-47853954 Msa1158450:CDS
GACTAACCCATGGTTCTAAG+AGG 0.532292 7_4:+47851475 None:intergenic
TCCAGATGCAACTCAAAGAA+AGG 0.539778 7_4:-47851876 Msa1158450:CDS
AGAAACTGTGTCATCTCTCA+TGG 0.541184 7_4:-47858040 Msa1158450:CDS
AGAACCATGGGTTAGTCTGG+TGG 0.542942 7_4:-47851469 Msa1158450:three_prime_UTR
TCTTCATACCTCAGAAGCAA+AGG 0.544774 7_4:-47857946 Msa1158450:CDS
CTAAGTTCCTCTTAGAACCA+TGG 0.545502 7_4:-47851482 Msa1158450:exon
GACTAAATAACCAAAGGGTA+TGG 0.548580 7_4:-47858106 Msa1158450:exon
CACGTTGTGCCAGCTGCAGT+GGG 0.556043 7_4:-47853970 Msa1158450:CDS
GATGAGAGGGTTAAATTCTG+AGG 0.562388 7_4:+47851175 None:intergenic
TAGTCAAGAACAGTCTTAGT+CGG 0.564841 7_4:-47854751 Msa1158450:CDS
GATGATGTATTTGATGGTGA+TGG 0.576113 7_4:-47857829 Msa1158450:CDS
TGAATATGATTCTGTTGATG+AGG 0.582241 7_4:-47857860 Msa1158450:CDS
TGCAAACATAATAGATGAGA+GGG 0.585007 7_4:+47851162 None:intergenic
GGACATACCCTTAAGACAGC+TGG 0.586777 7_4:+47857041 None:intergenic
CTTACAATAACCTATTTGTG+AGG 0.588278 7_4:+47851370 None:intergenic
AGCTGGCACAACGTGATCGA+TGG 0.589820 7_4:+47853978 None:intergenic
GCTGAGGCACGTCCCAGTGA+AGG 0.590374 7_4:-47857910 Msa1158450:CDS
TCTTGTTATTCAGAAACCAA+AGG 0.601581 7_4:-47851594 Msa1158450:intron
ATGCAAACATAATAGATGAG+AGG 0.611965 7_4:+47851161 None:intergenic
CAGCTGCAGTGGGTGGACAA+TGG 0.613401 7_4:-47853960 Msa1158450:CDS
GAAGTTGATTAAGGTCCCAA+AGG 0.616973 7_4:-47851826 Msa1158450:intron
ACTATTACATACCAATGAGA+AGG 0.620219 7_4:+47851235 None:intergenic
AAGAGAAGAACAAGTTACAA+AGG 0.622533 7_4:-47858006 Msa1158450:CDS
GTTGTGCCAGCTGCAGTGGG+TGG 0.629063 7_4:-47853967 Msa1158450:CDS
ATGGCACAGTTCACTGCACA+AGG 0.629424 7_4:-47858087 Msa1158450:CDS
AGGGAAGTGTTGTAATGCTG+AGG 0.635804 7_4:-47857926 Msa1158450:CDS
GCGTGTCTGGCATCACACAC+AGG 0.640173 7_4:+47851434 None:intergenic
TCATCATGAACACCTTCACT+GGG 0.662574 7_4:+47857898 None:intergenic
GGTATATAGAAAGATCCACT+GGG 0.672250 7_4:+47857062 None:intergenic
TGAGGTATGAAGAAGATGCA+TGG 0.700753 7_4:+47857956 None:intergenic
AGTGGGTGGACAATGGACAT+GGG 0.715330 7_4:-47853953 Msa1158450:CDS
GCAACCACCAGACTAACCCA+TGG 0.719996 7_4:+47851465 None:intergenic
TATATAGAAAGATCCACTGG+GGG 0.730035 7_4:+47857064 None:intergenic
GTATATAGAAAGATCCACTG+GGG 0.764928 7_4:+47857063 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATGAAATTATATAAGCT+TGG + chr7_4:47851772-47851791 None:intergenic 15.0%
!!! TGTATTTTGTTGTTATAAAA+TGG - chr7_4:47852537-47852556 Msa1158450:intron 15.0%
!! ACAATTATTAAACCATTAAA+TGG - chr7_4:47854191-47854210 Msa1158450:intron 15.0%
!! AATATAAATGTATAAGAACA+GGG + chr7_4:47854846-47854865 None:intergenic 15.0%
!! TAATATAAATGTATAAGAAC+AGG + chr7_4:47854847-47854866 None:intergenic 15.0%
!!! TTTTTTGTAATTATAGTATC+CGG - chr7_4:47854967-47854986 Msa1158450:intron 15.0%
!!! TTCATACTAAATTTTACAAA+AGG + chr7_4:47855599-47855618 None:intergenic 15.0%
!! TTAATTAGTTAAATAGATAC+TGG - chr7_4:47855840-47855859 Msa1158450:intron 15.0%
!! TAATTAGTTAAATAGATACT+GGG - chr7_4:47855841-47855860 Msa1158450:intron 15.0%
!! TATTGAATAATTTATGTATC+TGG + chr7_4:47856603-47856622 None:intergenic 15.0%
!!! CCTTTTATATTAAAAATGAA+TGG + chr7_4:47856696-47856715 None:intergenic 15.0%
!!! CCATTCATTTTTAATATAAA+AGG - chr7_4:47856693-47856712 Msa1158450:intron 15.0%
!!! ATTTTTAATATAAAAGGATC+TGG - chr7_4:47856699-47856718 Msa1158450:intron 15.0%
!! TAGTTATTAAATGGTAATTA+AGG + chr7_4:47857495-47857514 None:intergenic 15.0%
!!! TAATCTGTAATGATATTTTT+TGG - chr7_4:47857545-47857564 Msa1158450:intron 15.0%
!!! CTTTTAATGTAATTAAAACT+TGG + chr7_4:47857768-47857787 None:intergenic 15.0%
!! AAAGAAAAATATTTGTGTCA+CGG + chr7_4:47851184-47851203 None:intergenic 20.0%
!! AGCAAAAACATTGAAATTTA+AGG + chr7_4:47851228-47851247 None:intergenic 20.0%
!!! TTTTCTTCTTCTATCTATAA+TGG - chr7_4:47851256-47851275 Msa1158450:three_prime_UTR 20.0%
!! TTTCTTCTTCTATCTATAAT+GGG - chr7_4:47851257-47851276 Msa1158450:three_prime_UTR 20.0%
!!! TTTTAAGACTAAATAACCAA+AGG - chr7_4:47851349-47851368 Msa1158450:three_prime_UTR 20.0%
!!! TTTAAGACTAAATAACCAAA+GGG - chr7_4:47851350-47851369 Msa1158450:three_prime_UTR 20.0%
!!! AAACAAAATTGATAATGAGT+TGG - chr7_4:47851797-47851816 Msa1158450:intron 20.0%
!!! ATTTCAGATTTTGTTTATAC+AGG - chr7_4:47852338-47852357 Msa1158450:intron 20.0%
!! AAACATGTATACTATTTGAT+TGG - chr7_4:47852778-47852797 Msa1158450:intron 20.0%
!! ATTTAATTCCATGATTTCTT+TGG - chr7_4:47853451-47853470 Msa1158450:intron 20.0%
!! GTTTAATAATTGTCATTCTT+GGG + chr7_4:47854184-47854203 None:intergenic 20.0%
!! ATTATTAAACCATTAAATGG+TGG - chr7_4:47854194-47854213 Msa1158450:intron 20.0%
!!! AGCTCAACATATATTTATTT+TGG - chr7_4:47854645-47854664 Msa1158450:intron 20.0%
!! TAACAATGTAATATTGAGAA+GGG + chr7_4:47855259-47855278 None:intergenic 20.0%
!! ATAACAATGTAATATTGAGA+AGG + chr7_4:47855260-47855279 None:intergenic 20.0%
!! CAAAAAATATTCTAATGCAT+TGG - chr7_4:47855352-47855371 Msa1158450:intron 20.0%
!!! ATACTAAATTTTACAAAAGG+AGG + chr7_4:47855596-47855615 None:intergenic 20.0%
!! AGAAAATAATCAATTCTGTT+AGG - chr7_4:47855759-47855778 Msa1158450:intron 20.0%
!! AATTAGTTAAATAGATACTG+GGG - chr7_4:47855842-47855861 Msa1158450:intron 20.0%
!!! ATTTGATTAGTTGTTTTGAA+AGG - chr7_4:47855894-47855913 Msa1158450:intron 20.0%
!!! ATTTTCTATTTCAATTTCTC+CGG - chr7_4:47855992-47856011 Msa1158450:intron 20.0%
!! AAAATCATCAGGTTTAAAAA+TGG - chr7_4:47856149-47856168 Msa1158450:intron 20.0%
!! TTACTATTTGTTCTTGATTT+AGG + chr7_4:47856386-47856405 None:intergenic 20.0%
!!! TTAGATTATAAGTTGATCAT+AGG - chr7_4:47856450-47856469 Msa1158450:intron 20.0%
!!! ACTAATTGTTTCTTGTAAAA+AGG + chr7_4:47856534-47856553 None:intergenic 20.0%
!! CATTGAATAATTTATGTATG+TGG - chr7_4:47856564-47856583 Msa1158450:intron 20.0%
!!! GTCAATTGTTACTTATATAT+AGG - chr7_4:47856633-47856652 Msa1158450:intron 20.0%
!!! CTTCTTTTTCATAAAGTAAA+CGG - chr7_4:47857257-47857276 Msa1158450:intron 20.0%
!!! AAGAGAATATTTCTACTTTT+GGG + chr7_4:47857362-47857381 None:intergenic 20.0%
!!! TAAGAGAATATTTCTACTTT+TGG + chr7_4:47857363-47857382 None:intergenic 20.0%
!! ATTAAATGGTAATTAAGGTA+GGG + chr7_4:47857490-47857509 None:intergenic 20.0%
!! TATTAAATGGTAATTAAGGT+AGG + chr7_4:47857491-47857510 None:intergenic 20.0%
!!! ATTGCAGATTAGTTATTAAA+TGG + chr7_4:47857504-47857523 None:intergenic 20.0%
!! ATTAACATTTCATCATCAAT+TGG + chr7_4:47858122-47858141 None:intergenic 20.0%
!! TAAACAATGCTATTCAATAT+TGG - chr7_4:47858144-47858163 Msa1158450:five_prime_UTR 20.0%
!! AAACAATGCTATTCAATATT+GGG - chr7_4:47858145-47858164 Msa1158450:five_prime_UTR 20.0%
! TTCTTCTTCTATCTATAATG+GGG - chr7_4:47851258-47851277 Msa1158450:three_prime_UTR 25.0%
! ATGTATAGTTTAAAAAACCG+TGG - chr7_4:47852097-47852116 Msa1158450:intron 25.0%
!!! ATAACCCAAAAGTATTACTT+CGG + chr7_4:47852451-47852470 None:intergenic 25.0%
!! ACTAGGAACCATTTTATATA+CGG + chr7_4:47852594-47852613 None:intergenic 25.0%
! TATACTATTTGATTGGTGAA+AGG - chr7_4:47852785-47852804 Msa1158450:intron 25.0%
! TATTGTGAAGGATAATTGAA+AGG - chr7_4:47853066-47853085 Msa1158450:intron 25.0%
! TTACTTTAGTAGGTTTACAT+GGG + chr7_4:47853731-47853750 None:intergenic 25.0%
! ATTACTTTAGTAGGTTTACA+TGG + chr7_4:47853732-47853751 None:intergenic 25.0%
!! GCTTTTAAACTTCTACATAT+GGG + chr7_4:47853817-47853836 None:intergenic 25.0%
!! TGCTTTTAAACTTCTACATA+TGG + chr7_4:47853818-47853837 None:intergenic 25.0%
!! ACTATATTATGTGCTATTGA+TGG - chr7_4:47854016-47854035 Msa1158450:intron 25.0%
! ATAACAACATAGTTCATTCA+TGG + chr7_4:47854060-47854079 None:intergenic 25.0%
! TGATATCTAAAAACAAGTTC+CGG + chr7_4:47854146-47854165 None:intergenic 25.0%
! GGTTTAATAATTGTCATTCT+TGG + chr7_4:47854185-47854204 None:intergenic 25.0%
! TTAGTAAATCCACCATTTAA+TGG + chr7_4:47854206-47854225 None:intergenic 25.0%
!!! ACATATATTTATTTTGGTGC+AGG - chr7_4:47854651-47854670 Msa1158450:intron 25.0%
! ACTTCGATTTCAAATATATC+TGG - chr7_4:47854787-47854806 Msa1158450:CDS 25.0%
! TTATATTAGATTCGATGAGA+CGG - chr7_4:47854859-47854878 Msa1158450:intron 25.0%
!! ATAAAGGATCTATGATTTTC+TGG + chr7_4:47855133-47855152 None:intergenic 25.0%
! AACAATGTAATATTGAGAAG+GGG + chr7_4:47855258-47855277 None:intergenic 25.0%
!!! TCAGTTTTGTATCAAATGAA+AGG + chr7_4:47855697-47855716 None:intergenic 25.0%
! AGTAATTAGAAAACTTTGAG+CGG - chr7_4:47855799-47855818 Msa1158450:intron 25.0%
!! TTTTCTATTTCAATTTCTCC+GGG - chr7_4:47855993-47856012 Msa1158450:intron 25.0%
! GAAATAATTTGAAAGTAACC+CGG + chr7_4:47856014-47856033 None:intergenic 25.0%
! ATTGCAATACAGTTTAAACT+TGG + chr7_4:47856089-47856108 None:intergenic 25.0%
! TCAACAATAATTACAGTTCT+TGG + chr7_4:47856232-47856251 None:intergenic 25.0%
!! GTGAGATTTTAGATAAAAAG+AGG - chr7_4:47856256-47856275 Msa1158450:intron 25.0%
! TCTATGAATCTCTATAAGTA+GGG + chr7_4:47856357-47856376 None:intergenic 25.0%
! CGTATCTTAGATTATTTCAT+AGG + chr7_4:47856429-47856448 None:intergenic 25.0%
! AATATAAGAAAATACTCCTC+TGG + chr7_4:47856660-47856679 None:intergenic 25.0%
! GATGACAAAATAAGAATGAA+AGG - chr7_4:47856738-47856757 Msa1158450:intron 25.0%
! AAAACTGGAAGAGAATTATA+AGG - chr7_4:47856813-47856832 Msa1158450:intron 25.0%
!!! GTTAATTTTAAAAGCTCACA+AGG + chr7_4:47857212-47857231 None:intergenic 25.0%
! AGAAATCAGTTAGAAAGTTA+AGG + chr7_4:47857285-47857304 None:intergenic 25.0%
!!! TGATTTCTAGTTTACCTTAA+TGG - chr7_4:47857297-47857316 Msa1158450:intron 25.0%
!!! GATTTCTAGTTTACCTTAAT+GGG - chr7_4:47857298-47857317 Msa1158450:intron 25.0%
!!! GTAATGATATTTTTTGGTAC+AGG - chr7_4:47857551-47857570 Msa1158450:intron 25.0%
!! AGCAAAAATGAAGTTGATTA+AGG - chr7_4:47857626-47857645 Msa1158450:intron 25.0%
! AAACTTGGAATTCTTAACAT+TGG + chr7_4:47857753-47857772 None:intergenic 25.0%
!!! TACCTATTTTTGCATATTCA+TGG - chr7_4:47857804-47857823 Msa1158450:CDS 25.0%
! AACCATGAATATGCAAAAAT+AGG + chr7_4:47857809-47857828 None:intergenic 25.0%
!!! GATTTTTCTCTTTGCTTTTT+CGG + chr7_4:47858072-47858091 None:intergenic 25.0%
CAAGTACAAAATATCTCTGT+AGG - chr7_4:47851298-47851317 Msa1158450:three_prime_UTR 30.0%
AAGAGAAGAACAAGTTACAA+AGG - chr7_4:47851455-47851474 Msa1158450:three_prime_UTR 30.0%
TGAATATGATTCTGTTGATG+AGG - chr7_4:47851601-47851620 Msa1158450:intron 30.0%
! GATGATGATGATGTATTTGA+TGG - chr7_4:47851626-47851645 Msa1158450:intron 30.0%
TTGTGTTGGATATATCTTAC+AGG - chr7_4:47851675-47851694 Msa1158450:intron 30.0%
! TGCCATTTGTTTAGAGTTTA+TGG - chr7_4:47851987-47852006 Msa1158450:intron 30.0%
CTCCATAAACTCTAAACAAA+TGG + chr7_4:47851992-47852011 None:intergenic 30.0%
! TTGTTTAGAGTTTATGGAGA+AGG - chr7_4:47851993-47852012 Msa1158450:intron 30.0%
ATGTGATTCATTGTTGAGAT+TGG - chr7_4:47852065-47852084 Msa1158450:intron 30.0%
!! CTTCAACATTCTAAAATCAC+TGG - chr7_4:47852488-47852507 Msa1158450:intron 30.0%
ATTCTCTTTCACTTGTAACT+AGG + chr7_4:47852565-47852584 None:intergenic 30.0%
!! AAACTGTTGTTTCAGTAACT+AGG + chr7_4:47852611-47852630 None:intergenic 30.0%
ATGTTAGATTGTTAGTTCCT+AGG - chr7_4:47852876-47852895 Msa1158450:intron 30.0%
!! GTTTCTTTTGGTTATTGTGA+AGG - chr7_4:47853054-47853073 Msa1158450:intron 30.0%
AGACATATTTGGATGAAGAA+GGG - chr7_4:47853094-47853113 Msa1158450:intron 30.0%
! TAAGTACTGCTAAGATTGTT+GGG - chr7_4:47853191-47853210 Msa1158450:intron 30.0%
!! TTCTGAAACTAGAATCTAGT+TGG - chr7_4:47853261-47853280 Msa1158450:intron 30.0%
AATGGATGTTGAATCAACTT+AGG + chr7_4:47853349-47853368 None:intergenic 30.0%
TCTGTTAGAAAGATAAGAAG+TGG + chr7_4:47853632-47853651 None:intergenic 30.0%
AATCCATAAATCTATCTAGC+TGG + chr7_4:47853673-47853692 None:intergenic 30.0%
CCTACTAAAGTAATCAACTA+CGG - chr7_4:47853738-47853757 Msa1158450:intron 30.0%
ATACCAGTGATTATGAACTA+AGG - chr7_4:47853768-47853787 Msa1158450:intron 30.0%
TACCAGTGATTATGAACTAA+GGG - chr7_4:47853769-47853788 Msa1158450:intron 30.0%
TCCATGTCTACTTATAGAAA+AGG - chr7_4:47853846-47853865 Msa1158450:intron 30.0%
CCATGTCTACTTATAGAAAA+GGG - chr7_4:47853847-47853866 Msa1158450:intron 30.0%
CATGTCTACTTATAGAAAAG+GGG - chr7_4:47853848-47853867 Msa1158450:intron 30.0%
ATGTCTACTTATAGAAAAGG+GGG - chr7_4:47853849-47853868 Msa1158450:intron 30.0%
GGAAGTTGTATTATCAATCT+TGG - chr7_4:47853917-47853936 Msa1158450:intron 30.0%
!! TTGTTATTTAAACTGCTCCA+CGG + chr7_4:47853956-47853975 None:intergenic 30.0%
AGCACATAATATAGTTTACG+TGG + chr7_4:47854011-47854030 None:intergenic 30.0%
! CTTTTGTAGTTATGAAAGCT+GGG - chr7_4:47854082-47854101 Msa1158450:intron 30.0%
TCATTCTTGGGCAAAATATA+TGG + chr7_4:47854172-47854191 None:intergenic 30.0%
! GAACTATCATGATTGTTTCT+TGG - chr7_4:47854329-47854348 Msa1158450:intron 30.0%
AAGAAGATATCAGTGAAAAG+AGG - chr7_4:47854415-47854434 Msa1158450:intron 30.0%
GTCAGGTATTATATACCTTA+GGG + chr7_4:47854499-47854518 None:intergenic 30.0%
GTTAGAAGTTAGTTCATTTC+TGG + chr7_4:47854521-47854540 None:intergenic 30.0%
ACTTGTAAACAGTAGTTAGA+GGG + chr7_4:47854543-47854562 None:intergenic 30.0%
GTTGTTTGTCTGCTTTAATA+CGG - chr7_4:47854619-47854638 Msa1158450:intron 30.0%
AGAATGAGTTCATCAAATTC+CGG + chr7_4:47854989-47855008 None:intergenic 30.0%
AACAACAAAGTCAAGCATAA+AGG + chr7_4:47855149-47855168 None:intergenic 30.0%
AGAAATGATATATTCGTGCT+AGG + chr7_4:47855194-47855213 None:intergenic 30.0%
TAGTTGAGAACTGTGTATAA+TGG - chr7_4:47855215-47855234 Msa1158450:intron 30.0%
TTATCATCAGTCAGAAGAAA+CGG - chr7_4:47855284-47855303 Msa1158450:intron 30.0%
TTCAATCTCTACTAACTCAA+TGG + chr7_4:47855397-47855416 None:intergenic 30.0%
AGAGCAATACCTGTTATATT+CGG + chr7_4:47855447-47855466 None:intergenic 30.0%
!! AATTACTTTTGCGTCATCTT+TGG + chr7_4:47855786-47855805 None:intergenic 30.0%
! AAGGAAATTGGTTTCTTAGA+TGG + chr7_4:47856177-47856196 None:intergenic 30.0%
TTTGATTGCGAAAAGGAAAT+TGG + chr7_4:47856189-47856208 None:intergenic 30.0%
GTCTATGAATCTCTATAAGT+AGG + chr7_4:47856358-47856377 None:intergenic 30.0%
! TTGTTTCTTGTAAAAAGGAC+CGG + chr7_4:47856529-47856548 None:intergenic 30.0%
TTACTTATATATAGGACCAG+AGG - chr7_4:47856641-47856660 Msa1158450:intron 30.0%
! ATCTGGTTCAAGTTATTAGT+GGG - chr7_4:47856716-47856735 Msa1158450:intron 30.0%
!!! TTTTAACTTTCTGTCACCAA+TGG + chr7_4:47856797-47856816 None:intergenic 30.0%
ACTATTGAAGTGAATCATTG+TGG - chr7_4:47857061-47857080 Msa1158450:CDS 30.0%
! GAATCATTGTGTGCAAATTT+TGG + chr7_4:47857169-47857188 None:intergenic 30.0%
!! GTTAAGATGAAAGTACCTTT+GGG + chr7_4:47857653-47857672 None:intergenic 30.0%
!! TGTTAAGATGAAAGTACCTT+TGG + chr7_4:47857654-47857673 None:intergenic 30.0%
TATGATGCCTTAGCATAAAA+AGG - chr7_4:47857699-47857718 Msa1158450:intron 30.0%
! ATTGTTGCCTTTTTATGCTA+AGG + chr7_4:47857709-47857728 None:intergenic 30.0%
!! TCTTGTTATTCAGAAACCAA+AGG - chr7_4:47857867-47857886 Msa1158450:CDS 30.0%
AGAGAAAAATCCTCACAAAT+AGG - chr7_4:47858081-47858100 Msa1158450:CDS 30.0%
CTTACAATAACCTATTTGTG+AGG + chr7_4:47858094-47858113 None:intergenic 30.0%
ACTATTACATACCAATGAGA+AGG + chr7_4:47858229-47858248 None:intergenic 30.0%
TCATTGGTATGTAATAGTCT+TGG - chr7_4:47858231-47858250 Msa1158450:five_prime_UTR 30.0%
GACTAAATAACCAAAGGGTA+TGG - chr7_4:47851355-47851374 Msa1158450:three_prime_UTR 35.0%
!! GTAACTTGTTCTTCTCTTGT+GGG + chr7_4:47851453-47851472 None:intergenic 35.0%
!! TGTAACTTGTTCTTCTCTTG+TGG + chr7_4:47851454-47851473 None:intergenic 35.0%
!! GATGATGTATTTGATGGTGA+TGG - chr7_4:47851632-47851651 Msa1158450:intron 35.0%
TCAGCAGAAGTCTTGAATAT+TGG + chr7_4:47851899-47851918 None:intergenic 35.0%
CTCAGCTTAATGAAACTAAC+AGG + chr7_4:47852196-47852215 None:intergenic 35.0%
TATATAGAAAGATCCACTGG+GGG + chr7_4:47852400-47852419 None:intergenic 35.0%
GTATATAGAAAGATCCACTG+GGG + chr7_4:47852401-47852420 None:intergenic 35.0%
GGTATATAGAAAGATCCACT+GGG + chr7_4:47852402-47852421 None:intergenic 35.0%
TGGTATATAGAAAGATCCAC+TGG + chr7_4:47852403-47852422 None:intergenic 35.0%
TCTATATACCAGCTGTCTTA+AGG - chr7_4:47852412-47852431 Msa1158450:intron 35.0%
CTATATACCAGCTGTCTTAA+GGG - chr7_4:47852413-47852432 Msa1158450:intron 35.0%
!! AAAAGTATTACTTCGGAGTG+TGG + chr7_4:47852444-47852463 None:intergenic 35.0%
! ACACTCCGAAGTAATACTTT+TGG - chr7_4:47852443-47852462 Msa1158450:intron 35.0%
! CACTCCGAAGTAATACTTTT+GGG - chr7_4:47852444-47852463 Msa1158450:intron 35.0%
ATGACTCGCCGTATATAAAA+TGG - chr7_4:47852583-47852602 Msa1158450:intron 35.0%
ATATATACCTGACAGTACTG+CGG - chr7_4:47852640-47852659 Msa1158450:intron 35.0%
GCATATACACAGTTGTTAGA+GGG + chr7_4:47852702-47852721 None:intergenic 35.0%
TGCATATACACAGTTGTTAG+AGG + chr7_4:47852703-47852722 None:intergenic 35.0%
TGTGTATATGCAGAACTATC+TGG - chr7_4:47852711-47852730 Msa1158450:intron 35.0%
TTTGATTGGTGAAAGGTAGA+AGG - chr7_4:47852792-47852811 Msa1158450:intron 35.0%
TTGATTGGTGAAAGGTAGAA+GGG - chr7_4:47852793-47852812 Msa1158450:intron 35.0%
GTCTATCCATAGAAAAACTC+TGG + chr7_4:47852833-47852852 None:intergenic 35.0%
TAGGATAAGCTGATTAGATG+AGG - chr7_4:47852998-47853017 Msa1158450:intron 35.0%
GAGACATATTTGGATGAAGA+AGG - chr7_4:47853093-47853112 Msa1158450:intron 35.0%
GACATATTTGGATGAAGAAG+GGG - chr7_4:47853095-47853114 Msa1158450:intron 35.0%
! CTAAGTACTGCTAAGATTGT+TGG - chr7_4:47853190-47853209 Msa1158450:intron 35.0%
TGAAACTAGAATCTAGTTGG+TGG - chr7_4:47853264-47853283 Msa1158450:intron 35.0%
TTAGGTGAACACAAAGTCTT+TGG + chr7_4:47853331-47853350 None:intergenic 35.0%
TGATGATAAAAGACCATACG+AGG + chr7_4:47853377-47853396 None:intergenic 35.0%
! TCAACATAAAGTACCATCGA+AGG - chr7_4:47853394-47853413 Msa1158450:intron 35.0%
CAAGCTTACCAAAGAAATCA+TGG + chr7_4:47853462-47853481 None:intergenic 35.0%
TCAACAAAATGTTAGGTGAG+GGG + chr7_4:47853531-47853550 None:intergenic 35.0%
GTCAACAAAATGTTAGGTGA+GGG + chr7_4:47853532-47853551 None:intergenic 35.0%
AGACTCGTCAACAAAATGTT+AGG + chr7_4:47853538-47853557 None:intergenic 35.0%
CTCTTTCAAAGCTTTCAAAG+GGG + chr7_4:47853585-47853604 None:intergenic 35.0%
CCTCTTTCAAAGCTTTCAAA+GGG + chr7_4:47853586-47853605 None:intergenic 35.0%
!! CCTTTGAAAGCTTTGAAAGA+GGG - chr7_4:47853584-47853603 Msa1158450:intron 35.0%
AGAAAGATAAGAAGTGGTCA+TGG + chr7_4:47853626-47853645 None:intergenic 35.0%
CAACCAGCTAGATAGATTTA+TGG - chr7_4:47853667-47853686 Msa1158450:intron 35.0%
CCGTAGTTGATTACTTTAGT+AGG + chr7_4:47853741-47853760 None:intergenic 35.0%
TGAACTAAGGGCAGTAAAAA+TGG - chr7_4:47853781-47853800 Msa1158450:intron 35.0%
AACTTCTACATATGGGTCTT+TGG + chr7_4:47853810-47853829 None:intergenic 35.0%
! CCCTTTTCTATAAGTAGACA+TGG + chr7_4:47853850-47853869 None:intergenic 35.0%
TACTTATAGAAAAGGGGGTT+GGG - chr7_4:47853854-47853873 Msa1158450:intron 35.0%
! TGTTATTTAAACTGCTCCAC+GGG + chr7_4:47853955-47853974 None:intergenic 35.0%
CCAGCTTTCATAACTACAAA+AGG + chr7_4:47854084-47854103 None:intergenic 35.0%
! CCTTTTGTAGTTATGAAAGC+TGG - chr7_4:47854081-47854100 Msa1158450:intron 35.0%
TAAAAACAAGTTCCGGTTCA+TGG + chr7_4:47854139-47854158 None:intergenic 35.0%
TCTCCAGGATGAACATAATA+CGG - chr7_4:47854242-47854261 Msa1158450:intron 35.0%
GTTTCTTGGCATTATGAGAA+TGG - chr7_4:47854343-47854362 Msa1158450:intron 35.0%
TTCTGCTTTGCTAACTAAGA+TGG + chr7_4:47854397-47854416 None:intergenic 35.0%
ATTGACCTTCTCATTCTTAC+TGG - chr7_4:47854448-47854467 Msa1158450:intron 35.0%
TTGTTCCAGTAAGAATGAGA+AGG + chr7_4:47854456-47854475 None:intergenic 35.0%
TCTCATTCTTACTGGAACAA+TGG - chr7_4:47854456-47854475 Msa1158450:intron 35.0%
GGTCAGGTATTATATACCTT+AGG + chr7_4:47854500-47854519 None:intergenic 35.0%
!! AAGTTAGTTCATTTCTGGTC+AGG + chr7_4:47854516-47854535 None:intergenic 35.0%
CACTTGTAAACAGTAGTTAG+AGG + chr7_4:47854544-47854563 None:intergenic 35.0%
CTCTAACTACTGTTTACAAG+TGG - chr7_4:47854542-47854561 Msa1158450:intron 35.0%
TAGTCAAGAACAGTCTTAGT+CGG - chr7_4:47854710-47854729 Msa1158450:intron 35.0%
! ATATTAGAGCACTTACTGAC+AGG + chr7_4:47854764-47854783 None:intergenic 35.0%
TCAATGAGTGAGAACAATAG+TGG + chr7_4:47855013-47855032 None:intergenic 35.0%
! TTAGCCTACTTTGCCTTTTA+GGG + chr7_4:47855103-47855122 None:intergenic 35.0%
! TTTAGCCTACTTTGCCTTTT+AGG + chr7_4:47855104-47855123 None:intergenic 35.0%
ATGATATATTCGTGCTAGGT+AGG + chr7_4:47855190-47855209 None:intergenic 35.0%
GATTACCTTCCGAATATAAC+AGG - chr7_4:47855435-47855454 Msa1158450:intron 35.0%
CAATACCTGTTATATTCGGA+AGG + chr7_4:47855443-47855462 None:intergenic 35.0%
AAACTGATACAGTTTCAGCT+TGG - chr7_4:47855710-47855729 Msa1158450:intron 35.0%
TAAATAGATACTGGGGAACA+TGG - chr7_4:47855849-47855868 Msa1158450:intron 35.0%
AAATAGATACTGGGGAACAT+GGG - chr7_4:47855850-47855869 Msa1158450:intron 35.0%
! TTATTTCTTGAGCTGTTGTG+TGG - chr7_4:47856027-47856046 Msa1158450:intron 35.0%
! AACATTTTCAGCAACCCAAT+AGG + chr7_4:47856053-47856072 None:intergenic 35.0%
AGTCGAACATCAAAATCATC+AGG - chr7_4:47856138-47856157 Msa1158450:intron 35.0%
GAATCTCTATAAGTAGGGAT+TGG + chr7_4:47856352-47856371 None:intergenic 35.0%
ATATTATGAGATACTCCCTC+CGG - chr7_4:47856507-47856526 Msa1158450:intron 35.0%
! GATCTGGTTCAAGTTATTAG+TGG - chr7_4:47856715-47856734 Msa1158450:intron 35.0%
TGGAATTGAACATCAACCAT+TGG - chr7_4:47856778-47856797 Msa1158450:intron 35.0%
TGGTGACAGAAAGTTAAAAC+TGG - chr7_4:47856798-47856817 Msa1158450:intron 35.0%
TTGCTAGTGAGATGAGAAAT+AGG - chr7_4:47856852-47856871 Msa1158450:intron 35.0%
TTGCTTAATATGTGCCCTTA+GGG + chr7_4:47857339-47857358 None:intergenic 35.0%
ATGGTAATTAAGGTAGGGAA+AGG + chr7_4:47857485-47857504 None:intergenic 35.0%
!! CTTCATTTTTGCTTCCTCTA+AGG + chr7_4:47857619-47857638 None:intergenic 35.0%
AACAATATAGCTACCAAGGA+AGG - chr7_4:47857723-47857742 Msa1158450:intron 35.0%
ACAATATAGCTACCAAGGAA+GGG - chr7_4:47857724-47857743 Msa1158450:intron 35.0%
TAAGTTCCTCTTAGAACCAT+GGG - chr7_4:47857980-47857999 Msa1158450:CDS 35.0%
CTGCCTAATGTATGTTATGA+TGG - chr7_4:47858197-47858216 Msa1158450:five_prime_UTR 35.0%
GAGCCATCATAACATACATT+AGG + chr7_4:47858203-47858222 None:intergenic 35.0%
AGAAACTGTGTCATCTCTCA+TGG - chr7_4:47851421-47851440 Msa1158450:three_prime_UTR 40.0%
TGAGGTATGAAGAAGATGCA+TGG + chr7_4:47851508-47851527 None:intergenic 40.0%
TCTTCATACCTCAGAAGCAA+AGG - chr7_4:47851515-47851534 Msa1158450:CDS 40.0%
CTTCATACCTCAGAAGCAAA+GGG - chr7_4:47851516-47851535 Msa1158450:CDS 40.0%
TCATCATGAACACCTTCACT+GGG + chr7_4:47851566-47851585 None:intergenic 40.0%
TTCATCATGAACACCTTCAC+TGG + chr7_4:47851567-47851586 None:intergenic 40.0%
TCTGCTGAGTTGTTTGCTTA+TGG - chr7_4:47851911-47851930 Msa1158450:intron 40.0%
TTCCAGCATACAACATTGAC+TGG + chr7_4:47851964-47851983 None:intergenic 40.0%
TCTCTTAGCTAGTATCACCA+CGG + chr7_4:47852117-47852136 None:intergenic 40.0%
TTAAGCTGAGCTTATTTCCC+AGG - chr7_4:47852206-47852225 Msa1158450:intron 40.0%
TATATACCTGACAGTACTGC+GGG - chr7_4:47852641-47852660 Msa1158450:intron 40.0%
ATACACAGTTGTTAGAGGGT+TGG + chr7_4:47852698-47852717 None:intergenic 40.0%
ATCTGGTAATAACCCTTGCA+TGG - chr7_4:47852728-47852747 Msa1158450:intron 40.0%
TGATTGGTGAAAGGTAGAAG+GGG - chr7_4:47852794-47852813 Msa1158450:intron 40.0%
AGTACTAACCAAGAGGTCTA+AGG + chr7_4:47852908-47852927 None:intergenic 40.0%
!! TAGAAGGAGTACTAACCAAG+AGG + chr7_4:47852915-47852934 None:intergenic 40.0%
! ACCAATTGAGTTGTCTGCTT+GGG - chr7_4:47852948-47852967 Msa1158450:intron 40.0%
AGTTGCAGCAATAATCCACA+AGG - chr7_4:47853024-47853043 Msa1158450:intron 40.0%
!! GAAAGGTGTCGAGACATATT+TGG - chr7_4:47853083-47853102 Msa1158450:intron 40.0%
AAGAAGGGGAACTAGATGTT+TGG - chr7_4:47853109-47853128 Msa1158450:intron 40.0%
AAGCCACATTCAATATGTGC+TGG - chr7_4:47853500-47853519 Msa1158450:intron 40.0%
ACACCAGCACATATTGAATG+TGG + chr7_4:47853506-47853525 None:intergenic 40.0%
CGTCAACAAAATGTTAGGTG+AGG + chr7_4:47853533-47853552 None:intergenic 40.0%
TTCAAAGGGGTCTACCATTA+AGG + chr7_4:47853572-47853591 None:intergenic 40.0%
!! CCCTTTGAAAGCTTTGAAAG+AGG - chr7_4:47853583-47853602 Msa1158450:intron 40.0%
CCCTCTTTCAAAGCTTTCAA+AGG + chr7_4:47853587-47853606 None:intergenic 40.0%
CTTTAGTAGGTTTACATGGG+TGG + chr7_4:47853728-47853747 None:intergenic 40.0%
TGCCCTTAGTTCATAATCAC+TGG + chr7_4:47853774-47853793 None:intergenic 40.0%
CTACTTATAGAAAAGGGGGT+TGG - chr7_4:47853853-47853872 Msa1158450:intron 40.0%
!! TGAGAGTACTAGATTGCAAG+AGG - chr7_4:47853896-47853915 Msa1158450:intron 40.0%
AGTACTTTCCATCCATGAAC+CGG - chr7_4:47854124-47854143 Msa1158450:intron 40.0%
CTCCAGGATGAACATAATAC+GGG - chr7_4:47854243-47854262 Msa1158450:intron 40.0%
ATCCCGTATTATGTTCATCC+TGG + chr7_4:47854248-47854267 None:intergenic 40.0%
!! GGGATCTCTGTATTTTGAGA+GGG - chr7_4:47854263-47854282 Msa1158450:intron 40.0%
ATGATTTCTGAGCAAGGAAC+TGG + chr7_4:47855055-47855074 None:intergenic 40.0%
GTTCCTTGCTCAGAAATCAT+AGG - chr7_4:47855055-47855074 Msa1158450:intron 40.0%
! TAGCCTACTTTGCCTTTTAG+GGG + chr7_4:47855102-47855121 None:intergenic 40.0%
GGTAATCTCTTGTCAATGCA+AGG + chr7_4:47855422-47855441 None:intergenic 40.0%
TTTCGTAATTGAAGTCCGTC+TGG - chr7_4:47855645-47855664 Msa1158450:intron 40.0%
CACATGATAAAACAGCCAGA+CGG + chr7_4:47855663-47855682 None:intergenic 40.0%
AATAGATACTGGGGAACATG+GGG - chr7_4:47855851-47855870 Msa1158450:intron 40.0%
!! TTGTGGCTTTGATTGCGAAA+AGG + chr7_4:47856196-47856215 None:intergenic 40.0%
TTCTTGTAAAAAGGACCGGA+GGG + chr7_4:47856525-47856544 None:intergenic 40.0%
TTTCTTGTAAAAAGGACCGG+AGG + chr7_4:47856526-47856545 None:intergenic 40.0%
AGGACATGATACATCATCGA+TGG - chr7_4:47856758-47856777 Msa1158450:intron 40.0%
CTAGAGATGTGATGCATTTC+TGG - chr7_4:47857106-47857125 Msa1158450:intron 40.0%
CAAGTTAGCATGACCCATTA+AGG + chr7_4:47857314-47857333 None:intergenic 40.0%
GTTGCTTAATATGTGCCCTT+AGG + chr7_4:47857340-47857359 None:intergenic 40.0%
ATTAAGGTAGGGAAAGGCTA+AGG + chr7_4:47857479-47857498 None:intergenic 40.0%
TCCAGATGCAACTCAAAGAA+AGG - chr7_4:47857585-47857604 Msa1158450:intron 40.0%
!! TCCTTTCTTTGAGTTGCATC+TGG + chr7_4:47857589-47857608 None:intergenic 40.0%
! GAAGTTGATTAAGGTCCCAA+AGG - chr7_4:47857635-47857654 Msa1158450:intron 40.0%
AGGCAACAATATAGCTACCA+AGG - chr7_4:47857719-47857738 Msa1158450:intron 40.0%
CTAAGTTCCTCTTAGAACCA+TGG - chr7_4:47857979-47857998 Msa1158450:CDS 40.0%
GATGAGAGGGTTAAATTCTG+AGG + chr7_4:47858289-47858308 None:intergenic 40.0%
CGCTTGAAGCTTCTCTTCAA+TGG - chr7_4:47851398-47851417 Msa1158450:three_prime_UTR 45.0%
AACACTTCCCTTTGCTTCTG+AGG + chr7_4:47851526-47851545 None:intergenic 45.0%
!! AGGGAAGTGTTGTAATGCTG+AGG - chr7_4:47851535-47851554 Msa1158450:CDS 45.0%
!! TTTGATGGTGATGGCTTGTC+TGG - chr7_4:47851641-47851660 Msa1158450:intron 45.0%
! TGATGGCTTGTCTGGTTTCA+GGG - chr7_4:47851649-47851668 Msa1158450:intron 45.0%
ATATACCTGACAGTACTGCG+GGG - chr7_4:47852642-47852661 Msa1158450:intron 45.0%
TGGTAATAACCCTTGCATGG+TGG - chr7_4:47852731-47852750 Msa1158450:intron 45.0%
!! CTCACTTTTCCACCATGCAA+GGG + chr7_4:47852743-47852762 None:intergenic 45.0%
! ACGAGGCCAGAGTTTTTCTA+TGG - chr7_4:47852824-47852843 Msa1158450:intron 45.0%
! GAGGTCTAAGGTTCAAACCT+AGG + chr7_4:47852896-47852915 None:intergenic 45.0%
GGTTTGAACCTTAGACCTCT+TGG - chr7_4:47852897-47852916 Msa1158450:intron 45.0%
CAACTCAATTGGTGAGCTGA+GGG + chr7_4:47852941-47852960 None:intergenic 45.0%
ACAACTCAATTGGTGAGCTG+AGG + chr7_4:47852942-47852961 None:intergenic 45.0%
! CACCAATTGAGTTGTCTGCT+TGG - chr7_4:47852947-47852966 Msa1158450:intron 45.0%
TCCCAAGCAGACAACTCAAT+TGG + chr7_4:47852952-47852971 None:intergenic 45.0%
ATCTCTGCTTCATCTCACTC+TGG + chr7_4:47852979-47852998 None:intergenic 45.0%
GAGTGAGATGAAGCAGAGAT+AGG - chr7_4:47852979-47852998 Msa1158450:intron 45.0%
CAATAATCCACAAGGCGAGA+AGG - chr7_4:47853032-47853051 Msa1158450:intron 45.0%
AAAGAAACCTTCTCGCCTTG+TGG + chr7_4:47853042-47853061 None:intergenic 45.0%
! CAAGGCGAGAAGGTTTCTTT+TGG - chr7_4:47853042-47853061 Msa1158450:intron 45.0%
!! GTTTGGTCTGGTTCTGATGT+AGG - chr7_4:47853126-47853145 Msa1158450:intron 45.0%
!! TCTGGTTCTGATGTAGGCAA+GGG - chr7_4:47853132-47853151 Msa1158450:intron 45.0%
CATCCATTGAGAACCTCGTA+TGG - chr7_4:47853361-47853380 Msa1158450:intron 45.0%
AGACCATACGAGGTTCTCAA+TGG + chr7_4:47853367-47853386 None:intergenic 45.0%
! GATTAGTCGAGTTCCTTCGA+TGG + chr7_4:47853410-47853429 None:intergenic 45.0%
TCTCCACACAGCTACCTTAA+TGG - chr7_4:47853555-47853574 Msa1158450:intron 45.0%
CTACCATTAAGGTAGCTGTG+TGG + chr7_4:47853561-47853580 None:intergenic 45.0%
AAAGAGGGCAAAGCACACAA+TGG - chr7_4:47853599-47853618 Msa1158450:intron 45.0%
! GGTTGGGTTCTCTTTTGTGA+AGG - chr7_4:47853870-47853889 Msa1158450:intron 45.0%
TTGGAATCAGATACATCCCG+TGG - chr7_4:47853936-47853955 Msa1158450:intron 45.0%
TGAAAGCTGGGATCAAAGCA+AGG - chr7_4:47854094-47854113 Msa1158450:intron 45.0%
AACAAGTTCCGGTTCATGGA+TGG + chr7_4:47854135-47854154 None:intergenic 45.0%
ACAACCATTAGACTCTCTCC+AGG - chr7_4:47854227-47854246 Msa1158450:intron 45.0%
TCATCCTGGAGAGAGTCTAA+TGG + chr7_4:47854234-47854253 None:intergenic 45.0%
!! CGGGATCTCTGTATTTTGAG+AGG - chr7_4:47854262-47854281 Msa1158450:intron 45.0%
TGAGAGGGATCAAACAAAGC+TGG - chr7_4:47854278-47854297 Msa1158450:intron 45.0%
CTGCACACATATACACCCTA+AGG - chr7_4:47854481-47854500 Msa1158450:intron 45.0%
TGTTTACAAGTGGCACGATG+TGG - chr7_4:47854552-47854571 Msa1158450:intron 45.0%
GTTTACAAGTGGCACGATGT+GGG - chr7_4:47854553-47854572 Msa1158450:intron 45.0%
CAGGGCTATGTTTAGTTGAG+TGG + chr7_4:47854828-47854847 None:intergenic 45.0%
GTGCCTATGATTTCTGAGCA+AGG + chr7_4:47855061-47855080 None:intergenic 45.0%
GTTCACAACACACCCCTAAA+AGG - chr7_4:47855087-47855106 Msa1158450:intron 45.0%
ACACCCCTAAAAGGCAAAGT+AGG - chr7_4:47855096-47855115 Msa1158450:intron 45.0%
ATAGATACTGGGGAACATGG+GGG - chr7_4:47855852-47855871 Msa1158450:intron 45.0%
! TCATGCTAACTTGTGCCCTA+AGG - chr7_4:47857321-47857340 Msa1158450:intron 45.0%
! CATGCTAACTTGTGCCCTAA+GGG - chr7_4:47857322-47857341 Msa1158450:intron 45.0%
GAAAGGACGAAAGTCCTTAG+AGG - chr7_4:47857602-47857621 Msa1158450:intron 45.0%
TAACATTGGCAACCCTTCCT+TGG + chr7_4:47857739-47857758 None:intergenic 45.0%
GCGAGAATGTCATAGTCCTT+TGG + chr7_4:47857886-47857905 None:intergenic 45.0%
! AAGAGTTCTGACCGCGAAAA+AGG - chr7_4:47857930-47857949 Msa1158450:CDS 45.0%
! AGAGTTCTGACCGCGAAAAA+GGG - chr7_4:47857931-47857950 Msa1158450:CDS 45.0%
! AAAAGGGCACACCTGATGAA+TGG - chr7_4:47857947-47857966 Msa1158450:CDS 45.0%
AGATACTGACGCCATTCATC+AGG + chr7_4:47857961-47857980 None:intergenic 45.0%
!! GACTAACCCATGGTTCTAAG+AGG + chr7_4:47857989-47858008 None:intergenic 45.0%
!! CTTAGAACCATGGGTTAGTC+TGG - chr7_4:47857989-47858008 Msa1158450:CDS 45.0%
AAAGAGAATCGTAGCGTGTC+TGG + chr7_4:47858043-47858062 None:intergenic 45.0%
GTGAACTGTGCCATACCCTT+TGG + chr7_4:47851368-47851387 None:intergenic 50.0%
ATGGCACAGTTCACTGCACA+AGG - chr7_4:47851374-47851393 Msa1158450:three_prime_UTR 50.0%
! GTGATGGCTTGTCTGGTTTC+AGG - chr7_4:47851648-47851667 Msa1158450:intron 50.0%
! GATGGCTTGTCTGGTTTCAG+GGG - chr7_4:47851650-47851669 Msa1158450:intron 50.0%
! TGGTTTCAGGGGTCTTGTGT+TGG - chr7_4:47851661-47851680 Msa1158450:intron 50.0%
GACTGCTATCATCATGCTCC+AGG - chr7_4:47851938-47851957 Msa1158450:intron 50.0%
! GCATACAACATTGACTGGCC+TGG + chr7_4:47851959-47851978 None:intergenic 50.0%
GGCCAGTCAATGTTGTATGC+TGG - chr7_4:47851959-47851978 Msa1158450:intron 50.0%
GGACATACCCTTAAGACAGC+TGG + chr7_4:47852423-47852442 None:intergenic 50.0%
!! CCTCACTTTTCCACCATGCA+AGG + chr7_4:47852744-47852763 None:intergenic 50.0%
! CCTTGCATGGTGGAAAAGTG+AGG - chr7_4:47852741-47852760 Msa1158450:intron 50.0%
! TTGAGTTGTCTGCTTGGGAC+AGG - chr7_4:47852953-47852972 Msa1158450:intron 50.0%
GGGGAACTAGATGTTTGGTC+TGG - chr7_4:47853114-47853133 Msa1158450:intron 50.0%
!! GTCTGGTTCTGATGTAGGCA+AGG - chr7_4:47853131-47853150 Msa1158450:intron 50.0%
TGATGTAGGCAAGGGTGGAA+TGG - chr7_4:47853140-47853159 Msa1158450:intron 50.0%
GGTGGAATGGTTGAGAGGTA+TGG - chr7_4:47853153-47853172 Msa1158450:intron 50.0%
GGAACGTAGTTACGTGCGAA+GGG + chr7_4:47853310-47853329 None:intergenic 50.0%
TGGAACGTAGTTACGTGCGA+AGG + chr7_4:47853311-47853330 None:intergenic 50.0%
! CATGGGTGGTAGTGCTCAAA+GGG + chr7_4:47853714-47853733 None:intergenic 50.0%
! ACATGGGTGGTAGTGCTCAA+AGG + chr7_4:47853715-47853734 None:intergenic 50.0%
TGGAGAACGCTGTCGAAGTT+TGG + chr7_4:47853991-47854010 None:intergenic 50.0%
AGTGGGTGGACAATGGACAT+GGG - chr7_4:47855508-47855527 Msa1158450:intron 50.0%
TAGATACTGGGGAACATGGG+GGG - chr7_4:47855853-47855872 Msa1158450:intron 50.0%
TGAGCTGTTGTGTGGCCTAT+TGG - chr7_4:47856035-47856054 Msa1158450:intron 50.0%
GAGCTGTTGTGTGGCCTATT+GGG - chr7_4:47856036-47856055 Msa1158450:intron 50.0%
CGCAATCAAAGCCACAAGCA+TGG - chr7_4:47856199-47856218 Msa1158450:intron 50.0%
AGCTGCTGCTGTTAGAGGTA+TGG + chr7_4:47857908-47857927 None:intergenic 50.0%
CTTAGAGCTGCTGCTGTTAG+AGG + chr7_4:47857913-47857932 None:intergenic 50.0%
!! ATCAGGTGTGCCCTTTTTCG+CGG + chr7_4:47857944-47857963 None:intergenic 50.0%
!! AGAACCATGGGTTAGTCTGG+TGG - chr7_4:47857992-47858011 Msa1158450:CDS 50.0%
GATGGCTCAGACCTTCTCAT+TGG - chr7_4:47858215-47858234 Msa1158450:five_prime_UTR 50.0%
AAGACTGTGAACTCCCCCAG+TGG - chr7_4:47852384-47852403 Msa1158450:intron 55.0%
GTAGAAGGGGTAGCTTCACG+AGG - chr7_4:47852807-47852826 Msa1158450:intron 55.0%
GGTGAGCTGAGGGACATAGA+AGG + chr7_4:47852931-47852950 None:intergenic 55.0%
! GGTTCTGATGTAGGCAAGGG+TGG - chr7_4:47853135-47853154 Msa1158450:intron 55.0%
GCAAGGGTGGAATGGTTGAG+AGG - chr7_4:47853148-47853167 Msa1158450:intron 55.0%
AGCTGGCACAACGTGATCGA+TGG + chr7_4:47855486-47855505 None:intergenic 55.0%
CAGTGGGTGGACAATGGACA+TGG - chr7_4:47855507-47855526 Msa1158450:intron 55.0%
!! TTGGTGTCGTGCCATGCTTG+TGG + chr7_4:47856213-47856232 None:intergenic 55.0%
GCAACCACCAGACTAACCCA+TGG + chr7_4:47857999-47858018 None:intergenic 55.0%
CGCACTGAGCATAGAGGCCT+GGG + chr7_4:47852226-47852245 None:intergenic 60.0%
TGCACGCGCACTGAGCATAG+AGG + chr7_4:47852232-47852251 None:intergenic 60.0%
GACTTCCCCGCAGTACTGTC+AGG + chr7_4:47852650-47852669 None:intergenic 60.0%
TCACGTTGTGCCAGCTGCAG+TGG - chr7_4:47855490-47855509 Msa1158450:intron 60.0%
CACGTTGTGCCAGCTGCAGT+GGG - chr7_4:47855491-47855510 Msa1158450:intron 60.0%
CATTGTCCACCCACTGCAGC+TGG + chr7_4:47855503-47855522 None:intergenic 60.0%
CAGCTGCAGTGGGTGGACAA+TGG - chr7_4:47855501-47855520 Msa1158450:intron 60.0%
GCGTGTCTGGCATCACACAC+AGG + chr7_4:47858030-47858049 None:intergenic 60.0%
GCTGAGGCACGTCCCAGTGA+AGG - chr7_4:47851551-47851570 Msa1158450:CDS 65.0%
GCGCACTGAGCATAGAGGCC+TGG + chr7_4:47852227-47852246 None:intergenic 65.0%
GTTGTGCCAGCTGCAGTGGG+TGG - chr7_4:47855494-47855513 Msa1158450:intron 65.0%
CTGGGGAACATGGGGGGAGA+AGG - chr7_4:47855859-47855878 Msa1158450:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 47851174 47858309 47851174 ID=Msa1158450;Name=Msa1158450
chr7_4 mRNA 47851174 47858309 47851174 ID=Msa1158450-mRNA-1;Parent=Msa1158450;Name=Msa1158450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=200|1|1|1|0.83|1|7|316|275
chr7_4 exon 47851174 47851603 47851174 ID=Msa1158450-mRNA-1:exon:12801;Parent=Msa1158450-mRNA-1
chr7_4 exon 47851827 47851910 47851827 ID=Msa1158450-mRNA-1:exon:12800;Parent=Msa1158450-mRNA-1
chr7_4 exon 47853945 47854026 47853945 ID=Msa1158450-mRNA-1:exon:12799;Parent=Msa1158450-mRNA-1
chr7_4 exon 47854716 47854810 47854716 ID=Msa1158450-mRNA-1:exon:12798;Parent=Msa1158450-mRNA-1
chr7_4 exon 47857049 47857123 47857049 ID=Msa1158450-mRNA-1:exon:12797;Parent=Msa1158450-mRNA-1
chr7_4 exon 47857469 47857523 47857469 ID=Msa1158450-mRNA-1:exon:12796;Parent=Msa1158450-mRNA-1
chr7_4 exon 47857787 47858309 47857787 ID=Msa1158450-mRNA-1:exon:12795;Parent=Msa1158450-mRNA-1
chr7_4 five_prime_UTR 47858110 47858309 47858110 ID=Msa1158450-mRNA-1:five_prime_utr;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47857787 47858109 47857787 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47857469 47857523 47857469 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47857049 47857123 47857049 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47854716 47854810 47854716 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47853945 47854026 47853945 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47851827 47851910 47851827 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 CDS 47851490 47851603 47851490 ID=Msa1158450-mRNA-1:cds;Parent=Msa1158450-mRNA-1
chr7_4 three_prime_UTR 47851174 47851489 47851174 ID=Msa1158450-mRNA-1:three_prime_utr;Parent=Msa1158450-mRNA-1
Gene Sequence

>Msa1158450

ATGGCACAGTTCACTGCACAAGGTCGCTTGAAGCTTCTCTTCAATGGAGAAACTGTGTCATCTCTCATGGTTCAGACCCACAAGAGAAGAACAAGTTACAAAGGTTCTTCTTCTTTTGCTTCTAGATTTCACCATGCATCTTCTTCATACCTCAGAAGCAAAGGGAAGTGTTGTAATGCTGAGGCACGTCCCAGTGAAGGTGTTCATGATGAATATGCATATGTTTTTGAATATGATTCTGTTGATGAGGATGATGATGATGATGTATTTGATGGTGATGGCTTGTCTGGTTTCAGGGGTCTTGTGTTGGATATATCTTACAGGCCAGTCAATGTTGTATGCTGGAAACGTGCCATTTGTTTAGAGTTTATGGAGAAGGCTGATGTACTAGAGTATTATGATAAGACTGTGAACTCCCCCAGTGGATCTTTCTATATACCAGCTGTCTTAAGGGTTCGTCATTTACTTCAGATTATTAAAAGAAGAAGAGTAGTCAAGAACAGTCTTAGTCGGAAAAATATACTGTTTAGAGACAATTACACCTGTCAGTATTGCTCTTCACATGAGAATTTGACCATCGATCACGTTGTGCCAGCTGCAGTGGGTGGACAATGGACATGGGAAAATCTAGTGACTGCTTGTTCCAGATGCAACTCAAAGAAAGGACGAAAGTCCTTAGAGGAAGCAAAAATGAAGTTGATTAAGGTCCCAAAGAAACCAAAGGACTATGACATTCTCGCCATACCTCTAACAGCAGCAGCTCTAAGAGTTCTGACCGCGAAAAAGGGCACACCTGATGAATGGCGTCAGTATCTAAGTTCCTCTTAG

Protein sequence

>Msa1158450

MAQFTAQGRLKLLFNGETVSSLMVQTHKRRTSYKGSSSFASRFHHASSSYLRSKGKCCNAEARPSEGVHDEYAYVFEYDSVDEDDDDDVFDGDGLSGFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDKTVNSPSGSFYIPAVLRVRHLLQIIKRRRVVKNSLSRKNILFRDNYTCQYCSSHENLTIDHVVPAAVGGQWTWENLVTACSRCNSKKGRKSLEEAKMKLIKVPKKPKDYDILAIPLTAAALRVLTAKKGTPDEWRQYLSSS*