Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197530 | XP_003594194.1 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 1.61e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197530 | sp|Q8LD38|MPC3_ARATH | 62.037 | 108 | 39 | 1 | 1 | 106 | 1 | 108 | 6.34e-48 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197530 | Q2HVG0 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 7.71e-73 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa0197530 | 0.823424 | 1.395897e-53 | -8.615850e-47 |
| Msa0010490 | Msa0197530 | 0.814557 | 1.450199e-51 | -8.615850e-47 |
| Msa0010500 | Msa0197530 | 0.820554 | 6.451335e-53 | -8.615850e-47 |
| Msa0017320 | Msa0197530 | 0.818133 | 2.298054e-52 | -8.615850e-47 |
| Msa0020390 | Msa0197530 | 0.812198 | 4.783813e-51 | -8.615850e-47 |
| Msa0036540 | Msa0197530 | 0.822126 | 2.799302e-53 | -8.615850e-47 |
| Msa0050520 | Msa0197530 | -0.806940 | 6.445515e-50 | -8.615850e-47 |
| Msa0065010 | Msa0197530 | 0.807966 | 3.903175e-50 | -8.615850e-47 |
| Msa0077900 | Msa0197530 | 0.804533 | 2.063864e-49 | -8.615850e-47 |
| Msa0100590 | Msa0197530 | -0.812193 | 4.795039e-51 | -8.615850e-47 |
| Msa0100800 | Msa0197530 | 0.825887 | 3.668928e-54 | -8.615850e-47 |
| Msa0100880 | Msa0197530 | -0.812150 | 4.899337e-51 | -8.615850e-47 |
| Msa0103790 | Msa0197530 | 0.831354 | 1.750342e-55 | -8.615850e-47 |
| Msa0119440 | Msa0197530 | 0.815536 | 8.789789e-52 | -8.615850e-47 |
| Msa0126880 | Msa0197530 | 0.850040 | 2.195676e-60 | -8.615850e-47 |
| Msa0139670 | Msa0197530 | 0.806361 | 8.540790e-50 | -8.615850e-47 |
| Msa0146080 | Msa0197530 | 0.801951 | 7.065116e-49 | -8.615850e-47 |
| Msa0150260 | Msa0197530 | 0.808862 | 2.513673e-50 | -8.615850e-47 |
| Msa0154920 | Msa0197530 | 0.803465 | 3.442133e-49 | -8.615850e-47 |
| Msa0171980 | Msa0197530 | 0.815641 | 8.330865e-52 | -8.615850e-47 |
| Msa0174000 | Msa0197530 | 0.803345 | 3.644427e-49 | -8.615850e-47 |
| Msa0183870 | Msa0197530 | 0.825555 | 4.397224e-54 | -8.615850e-47 |
| Msa0188350 | Msa0197530 | 0.802827 | 4.664550e-49 | -8.615850e-47 |
| Msa0197520 | Msa0197530 | 0.807546 | 4.795858e-50 | -8.615850e-47 |
| Msa0197530 | Msa0239060 | 0.959886 | 6.133680e-118 | -8.615850e-47 |
| Msa0197530 | Msa0257490 | 0.807590 | 4.692006e-50 | -8.615850e-47 |
| Msa0197530 | Msa0262480 | 0.823152 | 1.615047e-53 | -8.615850e-47 |
| Msa0197530 | Msa0265160 | 0.803679 | 3.107444e-49 | -8.615850e-47 |
| Msa0197530 | Msa0265600 | 0.800479 | 1.413758e-48 | -8.615850e-47 |
| Msa0197530 | Msa0274100 | 0.811876 | 5.621628e-51 | -8.615850e-47 |
| Msa0197530 | Msa0276950 | 0.867185 | 1.649234e-65 | -8.615850e-47 |
| Msa0197530 | Msa0296820 | 0.801528 | 8.629871e-49 | -8.615850e-47 |
| Msa0197530 | Msa0296920 | 0.838317 | 3.089961e-57 | -8.615850e-47 |
| Msa0197530 | Msa0300350 | 0.804112 | 2.526226e-49 | -8.615850e-47 |
| Msa0197530 | Msa0313930 | 0.805351 | 1.391886e-49 | -8.615850e-47 |
| Msa0197530 | Msa0316920 | 0.846458 | 2.145188e-59 | -8.615850e-47 |
| Msa0197530 | Msa0365860 | 0.805999 | 1.017816e-49 | -8.615850e-47 |
| Msa0197530 | Msa0370160 | -0.810343 | 1.208510e-50 | -8.615850e-47 |
| Msa0197530 | Msa0382370 | 0.821664 | 3.580671e-53 | -8.615850e-47 |
| Msa0197530 | Msa0384670 | 0.801830 | 7.481093e-49 | -8.615850e-47 |
| Msa0197530 | Msa0384880 | 0.820897 | 5.380150e-53 | -8.615850e-47 |
| Msa0197530 | Msa0389210 | 0.801303 | 9.595697e-49 | -8.615850e-47 |
| Msa0197530 | Msa0418400 | 0.802118 | 6.527826e-49 | -8.615850e-47 |
| Msa0197530 | Msa0432160 | 0.804241 | 2.374615e-49 | -8.615850e-47 |
| Msa0197530 | Msa0436200 | 0.820507 | 6.613189e-53 | -8.615850e-47 |
| Msa0197530 | Msa0436920 | -0.836239 | 1.051650e-56 | -8.615850e-47 |
| Msa0197530 | Msa0437690 | -0.805913 | 1.060855e-49 | -8.615850e-47 |
| Msa0197530 | Msa0439890 | 0.825397 | 4.793221e-54 | -8.615850e-47 |
| Msa0197530 | Msa0443430 | 0.807615 | 4.635984e-50 | -8.615850e-47 |
| Msa0197530 | Msa0472770 | 0.814779 | 1.294758e-51 | -8.615850e-47 |
| Msa0197530 | Msa0476680 | 0.805177 | 1.514092e-49 | -8.615850e-47 |
| Msa0197530 | Msa0481970 | 0.810441 | 1.151146e-50 | -8.615850e-47 |
| Msa0197530 | Msa0509950 | -0.801522 | 8.652996e-49 | -8.615850e-47 |
| Msa0197530 | Msa0514610 | 0.820780 | 5.722698e-53 | -8.615850e-47 |
| Msa0197530 | Msa0521010 | 0.803919 | 2.769655e-49 | -8.615850e-47 |
| Msa0197530 | Msa0521670 | 0.809832 | 1.557146e-50 | -8.615850e-47 |
| Msa0197530 | Msa0524590 | 0.816674 | 4.895686e-52 | -8.615850e-47 |
| Msa0197530 | Msa0540550 | 0.809635 | 1.716751e-50 | -8.615850e-47 |
| Msa0197530 | Msa0547990 | 0.813376 | 2.640890e-51 | -8.615850e-47 |
| Msa0197530 | Msa0550570 | 0.803278 | 3.761890e-49 | -8.615850e-47 |
| Msa0197530 | Msa0569780 | 0.823752 | 1.169618e-53 | -8.615850e-47 |
| Msa0197530 | Msa0602370 | 0.811333 | 7.377763e-51 | -8.615850e-47 |
| Msa0197530 | Msa0603570 | 0.805201 | 1.496266e-49 | -8.615850e-47 |
| Msa0197530 | Msa0609220 | 0.809980 | 1.446993e-50 | -8.615850e-47 |
| Msa0197530 | Msa0610390 | 0.816537 | 5.254183e-52 | -8.615850e-47 |
| Msa0197530 | Msa0615680 | 0.818875 | 1.559795e-52 | -8.615850e-47 |
| Msa0197530 | Msa0616450 | 0.803241 | 3.828564e-49 | -8.615850e-47 |
| Msa0197530 | Msa0618930 | 0.800140 | 1.656986e-48 | -8.615850e-47 |
| Msa0197530 | Msa0626850 | 0.804610 | 1.989061e-49 | -8.615850e-47 |
| Msa0197530 | Msa0642970 | 0.807102 | 5.954776e-50 | -8.615850e-47 |
| Msa0197530 | Msa0644030 | 0.801639 | 8.187283e-49 | -8.615850e-47 |
| Msa0197530 | Msa0650920 | 0.803356 | 3.625297e-49 | -8.615850e-47 |
| Msa0197530 | Msa0658480 | 0.802173 | 6.361732e-49 | -8.615850e-47 |
| Msa0197530 | Msa0659790 | 0.824573 | 7.500797e-54 | -8.615850e-47 |
| Msa0197530 | Msa0664970 | 0.806703 | 7.233044e-50 | -8.615850e-47 |
| Msa0197530 | Msa0669720 | 0.807103 | 5.952538e-50 | -8.615850e-47 |
| Msa0197530 | Msa0701100 | 0.823968 | 1.040635e-53 | -8.615850e-47 |
| Msa0197530 | Msa0705990 | 0.807368 | 5.229793e-50 | -8.615850e-47 |
| Msa0197530 | Msa0707390 | 0.806526 | 7.882978e-50 | -8.615850e-47 |
| Msa0197530 | Msa0709120 | 0.802773 | 4.785407e-49 | -8.615850e-47 |
| Msa0197530 | Msa0720370 | 0.812780 | 3.568097e-51 | -8.615850e-47 |
| Msa0197530 | Msa0743530 | 0.809700 | 1.662048e-50 | -8.615850e-47 |
| Msa0197530 | Msa0746170 | 0.803931 | 2.753836e-49 | -8.615850e-47 |
| Msa0197530 | Msa0746210 | 0.800610 | 1.329428e-48 | -8.615850e-47 |
| Msa0197530 | Msa0748920 | 0.806301 | 8.792923e-50 | -8.615850e-47 |
| Msa0197530 | Msa0751010 | 0.805721 | 1.164204e-49 | -8.615850e-47 |
| Msa0197530 | Msa0758230 | 0.808774 | 2.625726e-50 | -8.615850e-47 |
| Msa0197530 | Msa0779260 | 0.802569 | 5.270985e-49 | -8.615850e-47 |
| Msa0197530 | Msa0794050 | 0.828561 | 8.396259e-55 | -8.615850e-47 |
| Msa0197530 | Msa0800370 | 0.839809 | 1.268565e-57 | -8.615850e-47 |
| Msa0197530 | Msa0813260 | 0.805019 | 1.633938e-49 | -8.615850e-47 |
| Msa0197530 | Msa0818770 | 0.838849 | 2.252464e-57 | -8.615850e-47 |
| Msa0197530 | Msa0822170 | 0.815364 | 9.599436e-52 | -8.615850e-47 |
| Msa0197530 | Msa0879850 | 0.805318 | 1.414489e-49 | -8.615850e-47 |
| Msa0197530 | Msa0882730 | 0.819870 | 9.253651e-53 | -8.615850e-47 |
| Msa0197530 | Msa0901110 | 0.804825 | 1.793813e-49 | -8.615850e-47 |
| Msa0197530 | Msa0903780 | 0.803814 | 2.913140e-49 | -8.615850e-47 |
| Msa0197530 | Msa0905750 | 0.815850 | 7.485007e-52 | -8.615850e-47 |
| Msa0197530 | Msa0905990 | 0.817068 | 3.995235e-52 | -8.615850e-47 |
| Msa0197530 | Msa0943270 | 0.826364 | 2.825829e-54 | -8.615850e-47 |
| Msa0197530 | Msa0944200 | 0.810384 | 1.184168e-50 | -8.615850e-47 |
| Msa0197530 | Msa0944610 | 0.819383 | 1.195666e-52 | -8.615850e-47 |
| Msa0197530 | Msa0947800 | 0.830589 | 2.696514e-55 | -8.615850e-47 |
| Msa0197530 | Msa0951400 | 0.803989 | 2.678492e-49 | -8.615850e-47 |
| Msa0197530 | Msa0970600 | 0.800446 | 1.435653e-48 | -8.615850e-47 |
| Msa0197530 | Msa0974950 | 0.811034 | 8.566811e-51 | -8.615850e-47 |
| Msa0197530 | Msa0999920 | 0.815504 | 8.938621e-52 | -8.615850e-47 |
| Msa0197530 | Msa1025940 | 0.815089 | 1.105318e-51 | -8.615850e-47 |
| Msa0197530 | Msa1034270 | 0.819666 | 1.030389e-52 | -8.615850e-47 |
| Msa0197530 | Msa1034290 | 0.800754 | 1.242360e-48 | -8.615850e-47 |
| Msa0197530 | Msa1042660 | 0.805724 | 1.162786e-49 | -8.615850e-47 |
| Msa0197530 | Msa1070390 | 0.822055 | 2.906738e-53 | -8.615850e-47 |
| Msa0197530 | Msa1072900 | 0.805322 | 1.411912e-49 | -8.615850e-47 |
| Msa0197530 | Msa1084500 | -0.838960 | 2.107665e-57 | -8.615850e-47 |
| Msa0197530 | Msa1089270 | 0.801383 | 9.240457e-49 | -8.615850e-47 |
| Msa0197530 | Msa1093100 | 0.821364 | 4.199795e-53 | -8.615850e-47 |
| Msa0197530 | Msa1113880 | 0.805590 | 1.240327e-49 | -8.615850e-47 |
| Msa0197530 | Msa1115280 | 0.801727 | 7.854563e-49 | -8.615850e-47 |
| Msa0197530 | Msa1122820 | 0.809209 | 2.118283e-50 | -8.615850e-47 |
| Msa0197530 | Msa1125790 | -0.847607 | 1.039206e-59 | -8.615850e-47 |
| Msa0197530 | Msa1127430 | 0.801525 | 8.642710e-49 | -8.615850e-47 |
| Msa0197530 | Msa1131170 | 0.809540 | 1.799532e-50 | -8.615850e-47 |
| Msa0197530 | Msa1131560 | 0.825102 | 5.627970e-54 | -8.615850e-47 |
| Msa0197530 | Msa1136790 | 0.812717 | 3.683470e-51 | -8.615850e-47 |
| Msa0197530 | Msa1158230 | 0.812017 | 5.237445e-51 | -8.615850e-47 |
| Msa0197530 | Msa1165780 | 0.824434 | 8.089838e-54 | -8.615850e-47 |
| Msa0197530 | Msa1166870 | 0.822998 | 1.754252e-53 | -8.615850e-47 |
| Msa0197530 | Msa1173900 | 0.802979 | 4.337976e-49 | -8.615850e-47 |
| Msa0197530 | Msa1178370 | 0.814307 | 1.646576e-51 | -8.615850e-47 |
| Msa0197530 | Msa1200320 | 0.855605 | 5.638833e-62 | -8.615850e-47 |
| Msa0197530 | Msa1206650 | 0.832300 | 1.022741e-55 | -8.615850e-47 |
| Msa0197530 | Msa1225100 | 0.825102 | 5.628096e-54 | -8.615850e-47 |
| Msa0197530 | Msa1226610 | 0.827835 | 1.256134e-54 | -8.615850e-47 |
| Msa0197530 | Msa1226720 | 0.826109 | 3.249398e-54 | -8.615850e-47 |
| Msa0197530 | Msa1253810 | 0.834303 | 3.240570e-56 | -8.615850e-47 |
| Msa0197530 | Msa1275110 | 0.800824 | 1.202226e-48 | -8.615850e-47 |
| Msa0197530 | Msa1296830 | 0.801497 | 8.756518e-49 | -8.615850e-47 |
| Msa0197530 | Msa1303580 | 0.819696 | 1.014014e-52 | -8.615850e-47 |
| Msa0197530 | Msa1307180 | 0.812322 | 4.493707e-51 | -8.615850e-47 |
| Msa0197530 | Msa1316360 | 0.804216 | 2.402749e-49 | -8.615850e-47 |
| Msa0197530 | Msa1329870 | 0.827091 | 1.894949e-54 | -8.615850e-47 |
| Msa0197530 | Msa1336560 | 0.839779 | 1.291773e-57 | -8.615850e-47 |
| Msa0197530 | Msa1351540 | 0.800424 | 1.450836e-48 | -8.615850e-47 |
| Msa0197530 | Msa1359270 | 0.809970 | 1.454242e-50 | -8.615850e-47 |
| Msa0197530 | Msa1364160 | 0.808857 | 2.520702e-50 | -8.615850e-47 |
| Msa0197530 | Msa1372280 | 0.807253 | 5.533205e-50 | -8.615850e-47 |
| Msa0197530 | Msa1381480 | 0.848487 | 5.940954e-60 | -8.615850e-47 |
| Msa0197530 | Msa1381650 | 0.809541 | 1.798411e-50 | -8.615850e-47 |
| Msa0197530 | Msa1382020 | 0.830116 | 3.519390e-55 | -8.615850e-47 |
| Msa0197530 | Msa1383350 | 0.805412 | 1.351438e-49 | -8.615850e-47 |
| Msa0197530 | Msa1395730 | 0.814112 | 1.818486e-51 | -8.615850e-47 |
| Msa0197530 | Msa1405220 | 0.835394 | 1.721094e-56 | -8.615850e-47 |
| Msa0197530 | Msa1421900 | 0.830933 | 2.221223e-55 | -8.615850e-47 |
| Msa0197530 | Msa1422810 | 0.819613 | 1.059451e-52 | -8.615850e-47 |
| Msa0197530 | Msa1426920 | 0.807434 | 5.064225e-50 | -8.615850e-47 |
| Msa0197530 | Msa1447180 | 0.811304 | 7.487745e-51 | -8.615850e-47 |
| Msa0197530 | Msa1447890 | 0.833951 | 3.969822e-56 | -8.615850e-47 |
| Msa0197530 | Msa1454450 | 0.812760 | 3.605107e-51 | -8.615850e-47 |
| Msa0197530 | Msa1454570 | 0.808476 | 3.039613e-50 | -8.615850e-47 |
| Msa0197530 | Msa1454680 | 0.806538 | 7.834871e-50 | -8.615850e-47 |
| Msa0197530 | Msa1454960 | 0.812262 | 4.631500e-51 | -8.615850e-47 |
| Msa0197530 | Msa1457160 | 0.815089 | 1.105243e-51 | -8.615850e-47 |
| Msa0197530 | Msa1458090 | 0.811119 | 8.210834e-51 | -8.615850e-47 |
| Msa0197530 | Msa1459960 | 0.829616 | 4.659768e-55 | -8.615850e-47 |
| Msa0197530 | Msa1462470 | 0.825587 | 4.322054e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197530 | MtrunA17_Chr2g0289641 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 1.48e-76 | 221 |
| Msa0197530 | MtrunA17_Chr2g0289651 | 68.868 | 106 | 33 | 0 | 1 | 106 | 1 | 106 | 9.96e-55 | 166 |
| Msa0197530 | MtrunA17_Chr1g0210881 | 35.227 | 88 | 57 | 0 | 4 | 91 | 2 | 89 | 1.70e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197530 | AT4G05590.1 | 62.037 | 108 | 39 | 1 | 1 | 106 | 1 | 108 | 6.45e-49 | 151 |
| Msa0197530 | AT4G22310.1 | 65.000 | 100 | 35 | 0 | 1 | 100 | 1 | 100 | 2.04e-48 | 150 |
| Msa0197530 | AT4G14695.3 | 61.321 | 106 | 41 | 0 | 1 | 106 | 1 | 106 | 1.97e-45 | 142 |
| Msa0197530 | AT4G14695.1 | 61.321 | 106 | 41 | 0 | 1 | 106 | 1 | 106 | 1.97e-45 | 142 |
| Msa0197530 | AT4G05590.2 | 45.890 | 146 | 39 | 2 | 1 | 106 | 1 | 146 | 2.11e-41 | 133 |
| Msa0197530 | AT4G05590.3 | 68.116 | 69 | 22 | 0 | 1 | 69 | 1 | 69 | 1.53e-33 | 111 |
| Msa0197530 | AT4G14695.2 | 47.170 | 106 | 38 | 1 | 1 | 106 | 1 | 88 | 2.07e-27 | 96.7 |
| Msa0197530 | AT5G20090.2 | 37.363 | 91 | 57 | 0 | 1 | 91 | 1 | 91 | 3.72e-17 | 71.2 |
| Msa0197530 | AT5G20090.1 | 37.363 | 91 | 57 | 0 | 1 | 91 | 1 | 91 | 3.72e-17 | 71.2 |
| Msa0197530 | AT5G20090.4 | 37.363 | 91 | 57 | 0 | 1 | 91 | 1 | 91 | 3.72e-17 | 71.2 |
| Msa0197530 | AT5G20090.3 | 37.363 | 91 | 57 | 0 | 1 | 91 | 1 | 91 | 4.97e-17 | 70.5 |
Find 38 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGGTAGCGGATTTATT+TGG | 0.153946 | 2_1:-15534520 | Msa0197530:CDS |
| GAATTTGAAAATAAGTTATT+TGG | 0.168818 | 2_1:-15533395 | Msa0197530:three_prime_UTR |
| TTGTATGTGTCCCACTTAAT+TGG | 0.191817 | 2_1:+15533361 | None:intergenic |
| CTTCAAAGCTTCAAGCCTTT+TGG | 0.202542 | 2_1:-15536659 | Msa0197530:CDS |
| CCTCCTTCTTCTTCTTCTCT+TGG | 0.212171 | 2_1:+15536708 | None:intergenic |
| GGGAAGTAACTCACTAGTTT+TGG | 0.229828 | 2_1:+15536620 | None:intergenic |
| TTTGTTGTGCAGTTCACTTT+TGG | 0.260431 | 2_1:-15535088 | Msa0197530:intron |
| CTTGCGCGAGATTTGGTATA+AGG | 0.301111 | 2_1:+15533860 | None:intergenic |
| CATGGGTAGCGGATTTATTT+GGG | 0.313191 | 2_1:-15534519 | Msa0197530:CDS |
| ATTCATTTCATTTCATTTGA+TGG | 0.322458 | 2_1:-15536685 | Msa0197530:exon |
| TGTATGTGTCCCACTTAATT+GGG | 0.327600 | 2_1:+15533362 | None:intergenic |
| ACTGATACTTGCGCGAGATT+TGG | 0.353565 | 2_1:+15533853 | None:intergenic |
| TTTGTTAAAAGTTAGTTAGT+TGG | 0.402417 | 2_1:-15533256 | Msa0197530:three_prime_UTR |
| AGGCAGTTCCTGCCATTGTA+AGG | 0.434791 | 2_1:+15533880 | None:intergenic |
| CAACCAGCTGTCATGGGTAG+CGG | 0.453994 | 2_1:-15534530 | Msa0197530:intron |
| TTTGGGCACCTGCATTTAAG+TGG | 0.466171 | 2_1:-15535070 | Msa0197530:CDS |
| GTATGATTCAAGTATTTAAG+TGG | 0.468823 | 2_1:-15533312 | Msa0197530:three_prime_UTR |
| CATTTCATTTCATTTGATGG+TGG | 0.479702 | 2_1:-15536682 | Msa0197530:exon |
| TGCGTAAACCTTACAATGGC+AGG | 0.480952 | 2_1:-15533888 | Msa0197530:CDS |
| GTTATACAAGTTACAAATCA+AGG | 0.509151 | 2_1:-15533230 | Msa0197530:three_prime_UTR |
| TTACAGCACTCAAATCATTC+CGG | 0.512506 | 2_1:-15534492 | Msa0197530:intron |
| TTGGGCACCTGCATTTAAGT+GGG | 0.520669 | 2_1:-15535069 | Msa0197530:CDS |
| GGATAGGAAATCTTCTCAGT+TGG | 0.527738 | 2_1:+15535011 | None:intergenic |
| GACACATACAATTCGTACAT+TGG | 0.528210 | 2_1:-15533349 | Msa0197530:three_prime_UTR |
| GCCAATTGGATGATTCCAAA+AGG | 0.528902 | 2_1:+15536644 | None:intergenic |
| CATACTTATTTGATGAGGAT+AGG | 0.542507 | 2_1:+15534995 | None:intergenic |
| GCATGATCATTCCTCAAAAG+AGG | 0.555237 | 2_1:-15533442 | Msa0197530:CDS |
| AGTATGATGCCCCAATTAAG+TGG | 0.558149 | 2_1:-15533372 | Msa0197530:three_prime_UTR |
| AATCCAAGAGAAGAAGAAGA+AGG | 0.572288 | 2_1:-15536711 | None:intergenic |
| GTGATACCCCACTTAAATGC+AGG | 0.574788 | 2_1:+15535062 | None:intergenic |
| TGGGCACCTGCATTTAAGTG+GGG | 0.581238 | 2_1:-15535068 | Msa0197530:CDS |
| TTGTAAGGTTTACGCAAACA+AGG | 0.587986 | 2_1:+15533895 | None:intergenic |
| ATGCACATACTTATTTGATG+AGG | 0.606094 | 2_1:+15534990 | None:intergenic |
| GTATGTGTCCCACTTAATTG+GGG | 0.622657 | 2_1:+15533363 | None:intergenic |
| AAAATCAGCAACATTGGCAA+CGG | 0.639076 | 2_1:+15535040 | None:intergenic |
| GTATGATGCCCCAATTAAGT+GGG | 0.639984 | 2_1:-15533371 | Msa0197530:three_prime_UTR |
| CCAAGAGAAGAAGAAGAAGG+AGG | 0.641031 | 2_1:-15536708 | Msa0197530:five_prime_UTR |
| TGTTTGCGTAAACCTTACAA+TGG | 0.671351 | 2_1:-15533892 | Msa0197530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTGTTATATTGT+TGG | + | chr2_1:15534167-15534186 | None:intergenic | 10.0% |
| !! | TTAAATGGATGTTTAAATAT+AGG | - | chr2_1:15533636-15533655 | Msa0197530:intron | 15.0% |
| !! | TAAATGGATGTTTAAATATA+GGG | - | chr2_1:15533637-15533656 | Msa0197530:intron | 15.0% |
| !!! | TAAAAATTGAAGATTTTCAT+GGG | - | chr2_1:15533869-15533888 | Msa0197530:CDS | 15.0% |
| !!! | ATTACAATTTAAAATAAGCA+TGG | + | chr2_1:15534108-15534127 | None:intergenic | 15.0% |
| !! | TTGATTTCTTCAAAAAAAAA+TGG | + | chr2_1:15534244-15534263 | None:intergenic | 15.0% |
| !! | GTAAAAAAATGTAATCTATT+TGG | + | chr2_1:15534661-15534680 | None:intergenic | 15.0% |
| !! | TTTGAAAATATAAAACTTAC+CGG | + | chr2_1:15535402-15535421 | None:intergenic | 15.0% |
| !! | ATGAAATATTGAAAATTTAG+TGG | - | chr2_1:15535445-15535464 | Msa0197530:intron | 15.0% |
| !! | ATAACACAAAATTATATCAA+TGG | + | chr2_1:15536346-15536365 | None:intergenic | 15.0% |
| !!! | ATTGATATAATTTTGTGTTA+TGG | - | chr2_1:15536345-15536364 | Msa0197530:intron | 15.0% |
| !! | GAATTTGAAAATAAGTTATT+TGG | - | chr2_1:15536477-15536496 | Msa0197530:intron | 15.0% |
| !! | ATTCATTTCATTTCATTTGA+TGG | - | chr2_1:15533187-15533206 | Msa0197530:three_prime_UTR | 20.0% |
| !! | TATTGCAATAAAACTCAAAA+GGG | + | chr2_1:15533275-15533294 | None:intergenic | 20.0% |
| !! | ATATTGCAATAAAACTCAAA+AGG | + | chr2_1:15533276-15533295 | None:intergenic | 20.0% |
| !! | TATCAAAGATGTAGAATAAT+AGG | - | chr2_1:15533320-15533339 | Msa0197530:three_prime_UTR | 20.0% |
| !! | ATCAAAGATGTAGAATAATA+GGG | - | chr2_1:15533321-15533340 | Msa0197530:three_prime_UTR | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | - | chr2_1:15533538-15533557 | Msa0197530:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | - | chr2_1:15533539-15533558 | Msa0197530:intron | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr2_1:15533540-15533559 | Msa0197530:intron | 20.0% |
| !! | TTGAAAAGGAGATTATATTT+AGG | - | chr2_1:15533600-15533619 | Msa0197530:intron | 20.0% |
| !! | TGAAAAGGAGATTATATTTA+GGG | - | chr2_1:15533601-15533620 | Msa0197530:intron | 20.0% |
| !!! | GTAAAAATTGAAGATTTTCA+TGG | - | chr2_1:15533868-15533887 | Msa0197530:CDS | 20.0% |
| !!! | ACAATTTGTTTTTGTTTTGA+AGG | + | chr2_1:15533917-15533936 | None:intergenic | 20.0% |
| !! | TAAATTGTAATAAAGCATGT+TGG | - | chr2_1:15534117-15534136 | Msa0197530:intron | 20.0% |
| !!! | TAAGTTTGTTTAAGGTTATT+TGG | + | chr2_1:15534354-15534373 | None:intergenic | 20.0% |
| !! | AAGTTAGTTACATATTAGTT+AGG | - | chr2_1:15534995-15535014 | Msa0197530:intron | 20.0% |
| !! | AGATAATGTAAACAAAAGTA+AGG | + | chr2_1:15535706-15535725 | None:intergenic | 20.0% |
| !!! | AACATAAGGTTTTAATCTTT+TGG | + | chr2_1:15535782-15535801 | None:intergenic | 20.0% |
| !!! | GTATACAAGAATTTTAATCT+CGG | - | chr2_1:15535822-15535841 | Msa0197530:intron | 20.0% |
| !!! | TTGATGTTCCAAATATTTTT+TGG | + | chr2_1:15536165-15536184 | None:intergenic | 20.0% |
| !!! | TTAAGTTTATTTTCTTTGAG+AGG | - | chr2_1:15536210-15536229 | Msa0197530:intron | 20.0% |
| !!! | TAATTTTGTGTTATGGATTT+TGG | - | chr2_1:15536352-15536371 | Msa0197530:intron | 20.0% |
| !!! | AACTAACTTTTAACAAACAT+AGG | + | chr2_1:15536613-15536632 | None:intergenic | 20.0% |
| !! | TTTGTTAAAAGTTAGTTAGT+TGG | - | chr2_1:15536616-15536635 | Msa0197530:intron | 20.0% |
| !! | TCTTTGATAATAATAAGTCC+AGG | + | chr2_1:15533309-15533328 | None:intergenic | 25.0% |
| ! | AAATGTGAAAAAAGCAAAAG+GGG | + | chr2_1:15533413-15533432 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAAAGCAAAA+GGG | + | chr2_1:15533414-15533433 | None:intergenic | 25.0% |
| ! | AGAAATGTGAAAAAAGCAAA+AGG | + | chr2_1:15533415-15533434 | None:intergenic | 25.0% |
| ! | CATACAAACAAAGAACAATT+TGG | + | chr2_1:15533489-15533508 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr2_1:15533550-15533569 | Msa0197530:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr2_1:15533586-15533605 | Msa0197530:intron | 25.0% |
| ! | GGGACAAAAATAAAGTTAAA+TGG | - | chr2_1:15533621-15533640 | Msa0197530:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr2_1:15533754-15533773 | Msa0197530:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr2_1:15533754-15533773 | None:intergenic | 25.0% |
| !! | TACCAATACAATTTTTCCAT+CGG | - | chr2_1:15533974-15533993 | Msa0197530:intron | 25.0% |
| !!! | TATTTGGACTGATTTTTCAT+TGG | + | chr2_1:15534338-15534357 | None:intergenic | 25.0% |
| !! | ATTAAGGGTAAGTTTGTTTA+AGG | + | chr2_1:15534362-15534381 | None:intergenic | 25.0% |
| !! | TTTTGTAAAATCAGCAACAT+TGG | + | chr2_1:15534841-15534860 | None:intergenic | 25.0% |
| !! | ACAAATACACATTTTCACAA+GGG | + | chr2_1:15535182-15535201 | None:intergenic | 25.0% |
| ! | TAGCATATATTCTCTTGTAT+TGG | - | chr2_1:15535279-15535298 | Msa0197530:intron | 25.0% |
| ! | AGCATATATTCTCTTGTATT+GGG | - | chr2_1:15535280-15535299 | Msa0197530:intron | 25.0% |
| !!! | ATTGAAAATTTAGTGGATTG+AGG | - | chr2_1:15535452-15535471 | Msa0197530:intron | 25.0% |
| ! | TATCATTACATTATCTCTCT+TGG | - | chr2_1:15535543-15535562 | Msa0197530:intron | 25.0% |
| ! | TTAACACTAACTTCAACATA+AGG | + | chr2_1:15535796-15535815 | None:intergenic | 25.0% |
| !!! | AATTTTAATCTCGGTTAACA+TGG | - | chr2_1:15535831-15535850 | Msa0197530:intron | 25.0% |
| !! | TTCCAATTTTGCAGAAAAAT+TGG | - | chr2_1:15535952-15535971 | Msa0197530:intron | 25.0% |
| !! | TTCCAATTTTTCTGCAAAAT+TGG | + | chr2_1:15535957-15535976 | None:intergenic | 25.0% |
| !!! | AATATTTTTTGGCCTAGTAA+GGG | + | chr2_1:15536154-15536173 | None:intergenic | 25.0% |
| !!! | AAATATTTTTTGGCCTAGTA+AGG | + | chr2_1:15536155-15536174 | None:intergenic | 25.0% |
| ! | TTACTAGGCCAAAAAATATT+TGG | - | chr2_1:15536154-15536173 | Msa0197530:intron | 25.0% |
| !!! | TTTATTTTCTTTGAGAGGAT+TGG | - | chr2_1:15536215-15536234 | Msa0197530:intron | 25.0% |
| !! | TTCATATTCTGACATTTTTC+CGG | - | chr2_1:15536255-15536274 | Msa0197530:intron | 25.0% |
| !! | CATTGTAATTGTATTTTGTC+CGG | + | chr2_1:15536277-15536296 | None:intergenic | 25.0% |
| ! | GTATGATTCAAGTATTTAAG+TGG | - | chr2_1:15536560-15536579 | Msa0197530:intron | 25.0% |
| ! | GTTATACAAGTTACAAATCA+AGG | - | chr2_1:15536642-15536661 | Msa0197530:CDS | 25.0% |
| CATTTCATTTCATTTGATGG+TGG | - | chr2_1:15533190-15533209 | Msa0197530:three_prime_UTR | 30.0% | |
| AAGGGCTACAAATTTAAAAG+AGG | + | chr2_1:15533355-15533374 | None:intergenic | 30.0% | |
| TGGATGTTTAAATATAGGGA+CGG | - | chr2_1:15533641-15533660 | Msa0197530:intron | 30.0% | |
| ! | AAGTTTCTTACATTTGAGAC+CGG | + | chr2_1:15533827-15533846 | None:intergenic | 30.0% |
| ! | AAGTTTCTTACATTTGAGAC+CGG | - | chr2_1:15533827-15533846 | Msa0197530:intron | 30.0% |
| AACCGATGGAAAAATTGTAT+TGG | + | chr2_1:15533979-15533998 | None:intergenic | 30.0% | |
| ! | AATACAATTTTTCCATCGGT+TGG | - | chr2_1:15533978-15533997 | Msa0197530:intron | 30.0% |
| !! | ATACAATTTTTCCATCGGTT+GGG | - | chr2_1:15533979-15533998 | Msa0197530:intron | 30.0% |
| TTCAAAAAAAAATGGCAGCA+GGG | + | chr2_1:15534236-15534255 | None:intergenic | 30.0% | |
| ! | CTAAAGGGTAAGTTTGTTTA+GGG | - | chr2_1:15534301-15534320 | Msa0197530:intron | 30.0% |
| TTAAAGCAAGTGACATAACA+TGG | + | chr2_1:15534629-15534648 | None:intergenic | 30.0% | |
| ACGAAACAACAATTTGAATC+AGG | + | chr2_1:15534683-15534702 | None:intergenic | 30.0% | |
| CAACAAAAGTGGTCAATTAA+TGG | + | chr2_1:15534771-15534790 | None:intergenic | 30.0% | |
| CATACTTATTTGATGAGGAT+AGG | + | chr2_1:15534880-15534899 | None:intergenic | 30.0% | |
| ATGCACATACTTATTTGATG+AGG | + | chr2_1:15534885-15534904 | None:intergenic | 30.0% | |
| CGTATTAGTTAGAGATTAGT+TGG | + | chr2_1:15535124-15535143 | None:intergenic | 30.0% | |
| ! | CACAAATACACATTTTCACA+AGG | + | chr2_1:15535183-15535202 | None:intergenic | 30.0% |
| CTTGTGAAAATGTGTATTTG+TGG | - | chr2_1:15535181-15535200 | Msa0197530:intron | 30.0% | |
| ! | GTATTTGTGGATTTTCTGAA+AGG | - | chr2_1:15535194-15535213 | Msa0197530:intron | 30.0% |
| ACATCAATTAGACTGTAACT+TGG | - | chr2_1:15535601-15535620 | Msa0197530:intron | 30.0% | |
| ! | ATCTTTTTCTCCGTAATCTT+TGG | - | chr2_1:15535662-15535681 | Msa0197530:intron | 30.0% |
| CTAAGAGAAACCAAAGATTA+CGG | + | chr2_1:15535675-15535694 | None:intergenic | 30.0% | |
| CAGGCAAACATATATATACA+GGG | + | chr2_1:15535759-15535778 | None:intergenic | 30.0% | |
| !! | TAAGGTTTTAATCTTTTGGC+AGG | + | chr2_1:15535778-15535797 | None:intergenic | 30.0% |
| ACTTTATGATTCGATGTTCA+TGG | - | chr2_1:15536094-15536113 | Msa0197530:intron | 30.0% | |
| ! | TTCATGGACTGAAAAATATG+TGG | - | chr2_1:15536110-15536129 | Msa0197530:intron | 30.0% |
| !! | AATATGTGGTTGATGAGATT+AGG | - | chr2_1:15536124-15536143 | Msa0197530:intron | 30.0% |
| CAAGGTTAATCTACAAAAGA+AGG | + | chr2_1:15536315-15536334 | None:intergenic | 30.0% | |
| AGTTAATATACGTATCACCA+TGG | + | chr2_1:15536393-15536412 | None:intergenic | 30.0% | |
| !!! | GAAGTAACTCACTAGTTTTG+GGG | + | chr2_1:15533253-15533272 | None:intergenic | 35.0% |
| !!! | GGAAGTAACTCACTAGTTTT+GGG | + | chr2_1:15533254-15533273 | None:intergenic | 35.0% |
| TGCAATATCTTGATCAAACC+TGG | - | chr2_1:15533288-15533307 | Msa0197530:three_prime_UTR | 35.0% | |
| GCGAGTAAAACTTTGTTCAA+GGG | + | chr2_1:15533373-15533392 | None:intergenic | 35.0% | |
| AGCGAGTAAAACTTTGTTCA+AGG | + | chr2_1:15533374-15533393 | None:intergenic | 35.0% | |
| AAAGGGGTTACATTAAGGAA+CGG | + | chr2_1:15533397-15533416 | None:intergenic | 35.0% | |
| AAGCAAAAGGGGTTACATTA+AGG | + | chr2_1:15533402-15533421 | None:intergenic | 35.0% | |
| ATGTTTAAATATAGGGACGG+AGG | - | chr2_1:15533644-15533663 | Msa0197530:intron | 35.0% | |
| TGTTTAAATATAGGGACGGA+GGG | - | chr2_1:15533645-15533664 | Msa0197530:intron | 35.0% | |
| !!! | GGTTTTATTTTTCACCAGCT+TGG | - | chr2_1:15534013-15534032 | Msa0197530:intron | 35.0% |
| CTTCAAAAAAAAATGGCAGC+AGG | + | chr2_1:15534237-15534256 | None:intergenic | 35.0% | |
| AACAAACTTACCCTTTAGCA+TGG | + | chr2_1:15534299-15534318 | None:intergenic | 35.0% | |
| ! | GCTAAAGGGTAAGTTTGTTT+AGG | - | chr2_1:15534300-15534319 | Msa0197530:intron | 35.0% |
| TGTGTATGTCATGTCAGAAT+TGG | - | chr2_1:15534449-15534468 | Msa0197530:intron | 35.0% | |
| GTGTGATTATGTCAAATCGA+CGG | - | chr2_1:15534557-15534576 | Msa0197530:intron | 35.0% | |
| TTACTTCATATCCAAACTGC+AGG | - | chr2_1:15534593-15534612 | Msa0197530:intron | 35.0% | |
| !! | GTCAATTAATGGATTGATGC+AGG | + | chr2_1:15534760-15534779 | None:intergenic | 35.0% |
| !! | TTTGTTGTGCAGTTCACTTT+TGG | - | chr2_1:15534784-15534803 | Msa0197530:intron | 35.0% |
| !! | TTGTTGTGCAGTTCACTTTT+GGG | - | chr2_1:15534785-15534804 | Msa0197530:intron | 35.0% |
| AAAATCAGCAACATTGGCAA+CGG | + | chr2_1:15534835-15534854 | None:intergenic | 35.0% | |
| TAGGAGTTAGTTAGTCCAAT+TGG | - | chr2_1:15535014-15535033 | Msa0197530:CDS | 35.0% | |
| TAGTCCAATTGGCTATATGA+CGG | - | chr2_1:15535025-15535044 | Msa0197530:CDS | 35.0% | |
| TATTCATCACTGAAAGGGAT+TGG | - | chr2_1:15535049-15535068 | Msa0197530:CDS | 35.0% | |
| ATATTCACGTTGGGTACAAT+TGG | - | chr2_1:15535097-15535116 | Msa0197530:intron | 35.0% | |
| TTACAGCACTCAAATCATTC+CGG | - | chr2_1:15535380-15535399 | Msa0197530:intron | 35.0% | |
| !! | TTAGTGGATTGAGGATCATT+TGG | - | chr2_1:15535461-15535480 | Msa0197530:intron | 35.0% |
| AGATTATGTGTGCATGATTC+TGG | - | chr2_1:15535518-15535537 | Msa0197530:intron | 35.0% | |
| GCAGGCAAACATATATATAC+AGG | + | chr2_1:15535760-15535779 | None:intergenic | 35.0% | |
| CACTAACATATCAGGATCAT+GGG | + | chr2_1:15535924-15535943 | None:intergenic | 35.0% | |
| TTGTAAGGTTTACGCAAACA+AGG | + | chr2_1:15535980-15535999 | None:intergenic | 35.0% | |
| TGTTTGCGTAAACCTTACAA+TGG | - | chr2_1:15535980-15535999 | Msa0197530:intron | 35.0% | |
| ATATCAATGGCTATCACACA+AGG | + | chr2_1:15536333-15536352 | None:intergenic | 35.0% | |
| TAATATACGTATCACCATGG+AGG | + | chr2_1:15536390-15536409 | None:intergenic | 35.0% | |
| TGTATGTGTCCCACTTAATT+GGG | + | chr2_1:15536513-15536532 | None:intergenic | 35.0% | |
| TTGTATGTGTCCCACTTAAT+TGG | + | chr2_1:15536514-15536533 | None:intergenic | 35.0% | |
| GACACATACAATTCGTACAT+TGG | - | chr2_1:15536523-15536542 | Msa0197530:intron | 35.0% | |
| ! | CTTCAAAGCTTCAAGCCTTT+TGG | - | chr2_1:15533213-15533232 | Msa0197530:three_prime_UTR | 40.0% |
| !!! | GCCTTTTGGAATCATCCAAT+TGG | - | chr2_1:15533227-15533246 | Msa0197530:three_prime_UTR | 40.0% |
| GCCAATTGGATGATTCCAAA+AGG | + | chr2_1:15533231-15533250 | None:intergenic | 40.0% | |
| !! | GGGAAGTAACTCACTAGTTT+TGG | + | chr2_1:15533255-15533274 | None:intergenic | 40.0% |
| ! | GACGGAGGGAGTATATTATA+CGG | - | chr2_1:15533659-15533678 | Msa0197530:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr2_1:15533831-15533850 | None:intergenic | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr2_1:15533830-15533849 | None:intergenic | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr2_1:15533830-15533849 | Msa0197530:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr2_1:15533831-15533850 | Msa0197530:intron | 40.0% |
| !! | ATTTTTCCATCGGTTGGGTA+TGG | - | chr2_1:15533984-15534003 | Msa0197530:intron | 40.0% |
| !! | TTTTTCCATCGGTTGGGTAT+GGG | - | chr2_1:15533985-15534004 | Msa0197530:intron | 40.0% |
| ! | TTTTTCACCAGCTTGGAGAT+TGG | - | chr2_1:15534020-15534039 | Msa0197530:intron | 40.0% |
| ! | TTTTCACCAGCTTGGAGATT+GGG | - | chr2_1:15534021-15534040 | Msa0197530:intron | 40.0% |
| AAATAAGCATGGCAGTAGAG+CGG | + | chr2_1:15534097-15534116 | None:intergenic | 40.0% | |
| AAAAAAAAATGGCAGCAGGG+CGG | + | chr2_1:15534233-15534252 | None:intergenic | 40.0% | |
| TGTGTGACGCAGTTACATTA+GGG | + | chr2_1:15534478-15534497 | None:intergenic | 40.0% | |
| ATCACACAGTCAGTTTCACA+TGG | + | chr2_1:15534544-15534563 | None:intergenic | 40.0% | |
| CTAACACTTGACAACAACGT+TGG | + | chr2_1:15534721-15534740 | None:intergenic | 40.0% | |
| AGTGAACTGCACAACAAAAG+TGG | + | chr2_1:15534782-15534801 | None:intergenic | 40.0% | |
| GGATAGGAAATCTTCTCAGT+TGG | + | chr2_1:15534864-15534883 | None:intergenic | 40.0% | |
| AGTCCAATTGGCTATATGAC+GGG | - | chr2_1:15535026-15535045 | Msa0197530:CDS | 40.0% | |
| ATACCCGTCATATAGCCAAT+TGG | + | chr2_1:15535032-15535051 | None:intergenic | 40.0% | |
| ACGGGTATTCATCACTGAAA+GGG | - | chr2_1:15535044-15535063 | Msa0197530:CDS | 40.0% | |
| TCACTGAAAGGGATTGGAAT+TGG | - | chr2_1:15535055-15535074 | Msa0197530:CDS | 40.0% | |
| CACTGAAAGGGATTGGAATT+GGG | - | chr2_1:15535056-15535075 | Msa0197530:CDS | 40.0% | |
| ! | GATTGGAATTGGGAAGTACA+TGG | - | chr2_1:15535066-15535085 | Msa0197530:CDS | 40.0% |
| CTGCTTGCAACTTGAATACT+CGG | + | chr2_1:15535255-15535274 | None:intergenic | 40.0% | |
| GACAGCTGGTTGAAAACAAA+AGG | + | chr2_1:15535334-15535353 | None:intergenic | 40.0% | |
| ! | TTGTTTTCAACCAGCTGTCA+TGG | - | chr2_1:15535335-15535354 | Msa0197530:intron | 40.0% |
| ! | TGTTTTCAACCAGCTGTCAT+GGG | - | chr2_1:15535336-15535355 | Msa0197530:intron | 40.0% |
| !! | TCATGGGTAGCGGATTTATT+TGG | - | chr2_1:15535352-15535371 | Msa0197530:intron | 40.0% |
| !! | CATGGGTAGCGGATTTATTT+GGG | - | chr2_1:15535353-15535372 | Msa0197530:intron | 40.0% |
| CGGTTAACATGGCAACATTT+AGG | - | chr2_1:15535842-15535861 | Msa0197530:intron | 40.0% | |
| CCACTAACATATCAGGATCA+TGG | + | chr2_1:15535925-15535944 | None:intergenic | 40.0% | |
| CCATGATCCTGATATGTTAG+TGG | - | chr2_1:15535922-15535941 | Msa0197530:intron | 40.0% | |
| GTAGTTGCCACTAACATATC+AGG | + | chr2_1:15535932-15535951 | None:intergenic | 40.0% | |
| !! | TGTGGTTGATGAGATTAGGT+TGG | - | chr2_1:15536128-15536147 | Msa0197530:intron | 40.0% |
| ! | TAACTTGCGATCTACTTCTC+AGG | - | chr2_1:15536408-15536427 | Msa0197530:intron | 40.0% |
| GCATGATCATTCCTCAAAAG+AGG | - | chr2_1:15536430-15536449 | Msa0197530:intron | 40.0% | |
| ! | TTTTGCTACGACCTCTTTTG+AGG | + | chr2_1:15536444-15536463 | None:intergenic | 40.0% |
| AGTATGATGCCCCAATTAAG+TGG | - | chr2_1:15536500-15536519 | Msa0197530:intron | 40.0% | |
| GTATGATGCCCCAATTAAGT+GGG | - | chr2_1:15536501-15536520 | Msa0197530:intron | 40.0% | |
| GTATGTGTCCCACTTAATTG+GGG | + | chr2_1:15536512-15536531 | None:intergenic | 40.0% | |
| !!! | TCACTAGTTTTGGGGCCAAT+TGG | + | chr2_1:15533245-15533264 | None:intergenic | 45.0% |
| CCTCTATTAAGTACTCCCTC+CGG | + | chr2_1:15533849-15533868 | None:intergenic | 45.0% | |
| !! | TTTTCCATCGGTTGGGTATG+GGG | - | chr2_1:15533986-15534005 | Msa0197530:intron | 45.0% |
| CTGTGTGACGCAGTTACATT+AGG | + | chr2_1:15534479-15534498 | None:intergenic | 45.0% | |
| AGCCGTTCAATCTGGATTGT+CGG | - | chr2_1:15534504-15534523 | Msa0197530:CDS | 45.0% | |
| AGCCGACAATCCAGATTGAA+CGG | + | chr2_1:15534509-15534528 | None:intergenic | 45.0% | |
| !! | TTGACAACAACGTTGGTGAC+TGG | + | chr2_1:15534714-15534733 | None:intergenic | 45.0% |
| TTTGGGCACCTGCATTTAAG+TGG | - | chr2_1:15534802-15534821 | Msa0197530:intron | 45.0% | |
| TTGGGCACCTGCATTTAAGT+GGG | - | chr2_1:15534803-15534822 | Msa0197530:intron | 45.0% | |
| GTGATACCCCACTTAAATGC+AGG | + | chr2_1:15534813-15534832 | None:intergenic | 45.0% | |
| GACGGGTATTCATCACTGAA+AGG | - | chr2_1:15535043-15535062 | Msa0197530:CDS | 45.0% | |
| GCGTCAGAGATATTCACGTT+GGG | - | chr2_1:15535088-15535107 | Msa0197530:intron | 45.0% | |
| AGGAATCAGCAATGCACAGA+TGG | + | chr2_1:15535314-15535333 | None:intergenic | 45.0% | |
| TGCGTAAACCTTACAATGGC+AGG | - | chr2_1:15535984-15536003 | Msa0197530:intron | 45.0% | |
| ! | CTTGCGCGAGATTTGGTATA+AGG | + | chr2_1:15536015-15536034 | None:intergenic | 45.0% |
| ACTGATACTTGCGCGAGATT+TGG | + | chr2_1:15536022-15536041 | None:intergenic | 45.0% | |
| !! | AGATTAGGTTGGCCCTTACT+AGG | - | chr2_1:15536139-15536158 | Msa0197530:intron | 45.0% |
| !! | TAATATATTTGTAAAATTAA+GGG | + | chr2_1:15534377-15534396 | None:intergenic | 5.0% |
| !! | ATAATATATTTGTAAAATTA+AGG | + | chr2_1:15534378-15534397 | None:intergenic | 5.0% |
| ! | TCCCAAAGCATTACTCCCTC+CGG | - | chr2_1:15533697-15533716 | Msa0197530:intron | 50.0% |
| ACCGGAGGGAGTAATGCTTT+GGG | + | chr2_1:15533701-15533720 | None:intergenic | 50.0% | |
| !! | CCGGAGGGAGTACTTAATAG+AGG | - | chr2_1:15533846-15533865 | Msa0197530:intron | 50.0% |
| TGGAGATTGGGACGAGTACA+AGG | - | chr2_1:15534033-15534052 | Msa0197530:intron | 50.0% | |
| AAGGATACCTGAACCCCATC+AGG | - | chr2_1:15534052-15534071 | Msa0197530:intron | 50.0% | |
| TACCCTTTAGCATGGCAGCA+GGG | + | chr2_1:15534291-15534310 | None:intergenic | 50.0% | |
| TTACCCTTTAGCATGGCAGC+AGG | + | chr2_1:15534292-15534311 | None:intergenic | 50.0% | |
| TGGGCACCTGCATTTAAGTG+GGG | - | chr2_1:15534804-15534823 | Msa0197530:intron | 50.0% | |
| ! | TAACGAGCAAAAAAGCGCGC+AGG | + | chr2_1:15534963-15534982 | None:intergenic | 50.0% |
| GGCGTCAGAGATATTCACGT+TGG | - | chr2_1:15535087-15535106 | Msa0197530:intron | 50.0% | |
| AGGCAGTTCCTGCCATTGTA+AGG | + | chr2_1:15535995-15536014 | None:intergenic | 50.0% | |
| ! | GGCACTGTTTTGTACCTCCA+TGG | - | chr2_1:15536373-15536392 | Msa0197530:intron | 50.0% |
| GACCGGAGGGAGTAATGCTT+TGG | + | chr2_1:15533702-15533721 | None:intergenic | 55.0% | |
| ACTCGTCCCAATCTCCAAGC+TGG | + | chr2_1:15534030-15534049 | None:intergenic | 55.0% | |
| ACCTGAACCCCATCAGGTTC+AGG | - | chr2_1:15534058-15534077 | Msa0197530:intron | 55.0% | |
| CCTGAACCCCATCAGGTTCA+GGG | - | chr2_1:15534059-15534078 | Msa0197530:intron | 55.0% | |
| AACCCCATCAGGTTCAGGGA+CGG | - | chr2_1:15534063-15534082 | Msa0197530:intron | 55.0% | |
| TTCCCGTCCCTGAACCTGAT+GGG | + | chr2_1:15534069-15534088 | None:intergenic | 55.0% | |
| AGCCCTGCTGCCATGCTAAA+GGG | - | chr2_1:15534286-15534305 | Msa0197530:intron | 55.0% | |
| CAGCTCTCAGCCGTTCAATC+TGG | - | chr2_1:15534496-15534515 | Msa0197530:CDS | 55.0% | |
| GATCGCAATCGCCTGCAGTT+TGG | + | chr2_1:15534607-15534626 | None:intergenic | 55.0% | |
| CAACCAGCTGTCATGGGTAG+CGG | - | chr2_1:15535342-15535361 | Msa0197530:intron | 55.0% | |
| AATCCGCTACCCATGACAGC+TGG | + | chr2_1:15535348-15535367 | None:intergenic | 55.0% | |
| ! | CATCGGTTGGGTATGGGGCT+GGG | - | chr2_1:15533991-15534010 | Msa0197530:intron | 60.0% |
| ATCGGTTGGGTATGGGGCTG+GGG | - | chr2_1:15533992-15534011 | Msa0197530:intron | 60.0% | |
| CCCTGAACCTGATGGGGTTC+AGG | + | chr2_1:15534062-15534081 | None:intergenic | 60.0% | |
| ACCCCATCAGGTTCAGGGAC+GGG | - | chr2_1:15534064-15534083 | Msa0197530:intron | 60.0% | |
| TCCCGTCCCTGAACCTGATG+GGG | + | chr2_1:15534068-15534087 | None:intergenic | 60.0% | |
| CTTCCCGTCCCTGAACCTGA+TGG | + | chr2_1:15534070-15534089 | None:intergenic | 60.0% | |
| CATCAGGTTCAGGGACGGGA+AGG | - | chr2_1:15534068-15534087 | Msa0197530:intron | 60.0% | |
| AAAATGGCAGCAGGGCGGAG+CGG | + | chr2_1:15534228-15534247 | None:intergenic | 60.0% | |
| CATGGCAGCAGGGCTGAATG+TGG | + | chr2_1:15534281-15534300 | None:intergenic | 60.0% | |
| CAGCCCTGCTGCCATGCTAA+AGG | - | chr2_1:15534285-15534304 | Msa0197530:intron | 60.0% | |
| CCAGCCCCATACCCAACCGA+TGG | + | chr2_1:15533993-15534012 | None:intergenic | 65.0% | |
| ! | CCATCGGTTGGGTATGGGGC+TGG | - | chr2_1:15533990-15534009 | Msa0197530:intron | 65.0% |
| AAATGGCAGCAGGGCGGAGC+GGG | + | chr2_1:15534227-15534246 | None:intergenic | 65.0% | |
| GGAGCGGGGGACGTTGTTGC+AGG | + | chr2_1:15534212-15534231 | None:intergenic | 70.0% | |
| AATGGCAGCAGGGCGGAGCG+GGG | + | chr2_1:15534226-15534245 | None:intergenic | 70.0% | |
| ATGGCAGCAGGGCGGAGCGG+GGG | + | chr2_1:15534225-15534244 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 15533166 | 15536728 | 15533166 | ID=Msa0197530;Name=Msa0197530 |
| chr2_1 | mRNA | 15533166 | 15536728 | 15533166 | ID=Msa0197530-mRNA-1;Parent=Msa0197530;Name=Msa0197530-mRNA-1;_AED=0.29;_eAED=0.29;_QI=40|1|1|1|0.5|0.6|5|259|106 |
| chr2_1 | exon | 15533166 | 15533464 | 15533166 | ID=Msa0197530-mRNA-1:exon:6579;Parent=Msa0197530-mRNA-1 |
| chr2_1 | exon | 15533855 | 15533928 | 15533855 | ID=Msa0197530-mRNA-1:exon:6578;Parent=Msa0197530-mRNA-1 |
| chr2_1 | exon | 15534493 | 15534545 | 15534493 | ID=Msa0197530-mRNA-1:exon:6577;Parent=Msa0197530-mRNA-1 |
| chr2_1 | exon | 15535000 | 15535098 | 15535000 | ID=Msa0197530-mRNA-1:exon:6576;Parent=Msa0197530-mRNA-1 |
| chr2_1 | exon | 15536634 | 15536728 | 15536634 | ID=Msa0197530-mRNA-1:exon:6575;Parent=Msa0197530-mRNA-1 |
| chr2_1 | five_prime_UTR | 15536689 | 15536728 | 15536689 | ID=Msa0197530-mRNA-1:five_prime_utr;Parent=Msa0197530-mRNA-1 |
| chr2_1 | CDS | 15536634 | 15536688 | 15536634 | ID=Msa0197530-mRNA-1:cds;Parent=Msa0197530-mRNA-1 |
| chr2_1 | CDS | 15535000 | 15535098 | 15535000 | ID=Msa0197530-mRNA-1:cds;Parent=Msa0197530-mRNA-1 |
| chr2_1 | CDS | 15534493 | 15534545 | 15534493 | ID=Msa0197530-mRNA-1:cds;Parent=Msa0197530-mRNA-1 |
| chr2_1 | CDS | 15533855 | 15533928 | 15533855 | ID=Msa0197530-mRNA-1:cds;Parent=Msa0197530-mRNA-1 |
| chr2_1 | CDS | 15533425 | 15533464 | 15533425 | ID=Msa0197530-mRNA-1:cds;Parent=Msa0197530-mRNA-1 |
| chr2_1 | three_prime_UTR | 15533166 | 15533424 | 15533166 | ID=Msa0197530-mRNA-1:three_prime_utr;Parent=Msa0197530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
