Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175290 | XP_013469227.1 | 93.720 | 207 | 11 | 1 | 1 | 205 | 1 | 207 | 8.93e-104 | 308 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175290 | sp|F6HQ26|RU1C_VITVI | 65.278 | 216 | 61 | 5 | 1 | 205 | 1 | 213 | 1.55e-75 | 229 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175290 | A0A072VYW7 | 93.720 | 207 | 11 | 1 | 1 | 205 | 1 | 207 | 4.27e-104 | 308 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004060 | Msa0175290 | -0.822399 | 2.418812e-53 | -8.615850e-47 |
Msa0006880 | Msa0175290 | -0.832244 | 1.055624e-55 | -8.615850e-47 |
Msa0008840 | Msa0175290 | -0.817749 | 2.805586e-52 | -8.615850e-47 |
Msa0050520 | Msa0175290 | 0.809759 | 1.614334e-50 | -8.615850e-47 |
Msa0052300 | Msa0175290 | 0.829381 | 5.313233e-55 | -8.615850e-47 |
Msa0052350 | Msa0175290 | 0.882867 | 7.266517e-71 | -8.615850e-47 |
Msa0055150 | Msa0175290 | -0.836185 | 1.085192e-56 | -8.615850e-47 |
Msa0057750 | Msa0175290 | -0.804798 | 1.816818e-49 | -8.615850e-47 |
Msa0082830 | Msa0175290 | 0.946117 | 8.503333e-105 | -8.615850e-47 |
Msa0090030 | Msa0175290 | -0.822935 | 1.814589e-53 | -8.615850e-47 |
Msa0092170 | Msa0175290 | -0.807184 | 5.721851e-50 | -8.615850e-47 |
Msa0097360 | Msa0175290 | 0.863431 | 2.502231e-64 | -8.615850e-47 |
Msa0100590 | Msa0175290 | 0.801910 | 7.204137e-49 | -8.615850e-47 |
Msa0100880 | Msa0175290 | 0.808017 | 3.807350e-50 | -8.615850e-47 |
Msa0103070 | Msa0175290 | -0.806624 | 7.513312e-50 | -8.615850e-47 |
Msa0112300 | Msa0175290 | 0.996897 | 8.327439e-234 | -8.615850e-47 |
Msa0131450 | Msa0175290 | -0.818210 | 2.207597e-52 | -8.615850e-47 |
Msa0146070 | Msa0175290 | 0.803556 | 3.294734e-49 | -8.615850e-47 |
Msa0166750 | Msa0175290 | -0.809007 | 2.340541e-50 | -8.615850e-47 |
Msa0173330 | Msa0175290 | -0.813395 | 2.616085e-51 | -8.615850e-47 |
Msa0175290 | Msa0183460 | -0.805449 | 1.327703e-49 | -8.615850e-47 |
Msa0175290 | Msa0208810 | -0.811953 | 5.409163e-51 | -8.615850e-47 |
Msa0175290 | Msa0212750 | 0.831752 | 1.397126e-55 | -8.615850e-47 |
Msa0175290 | Msa0219250 | 0.801265 | 9.768050e-49 | -8.615850e-47 |
Msa0175290 | Msa0229360 | -0.806581 | 7.672267e-50 | -8.615850e-47 |
Msa0175290 | Msa0295000 | 0.827734 | 1.328329e-54 | -8.615850e-47 |
Msa0175290 | Msa0335320 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
Msa0175290 | Msa0370160 | 0.828708 | 7.738219e-55 | -8.615850e-47 |
Msa0175290 | Msa0421330 | 0.808364 | 3.212421e-50 | -8.615850e-47 |
Msa0175290 | Msa0436190 | -0.802977 | 4.342765e-49 | -8.615850e-47 |
Msa0175290 | Msa0436200 | -0.800845 | 1.190701e-48 | -8.615850e-47 |
Msa0175290 | Msa0437690 | 0.820278 | 7.463631e-53 | -8.615850e-47 |
Msa0175290 | Msa0439890 | -0.808424 | 3.118439e-50 | -8.615850e-47 |
Msa0175290 | Msa0465920 | -0.801361 | 9.337067e-49 | -8.615850e-47 |
Msa0175290 | Msa0465960 | -0.809089 | 2.248216e-50 | -8.615850e-47 |
Msa0175290 | Msa0509950 | 0.810357 | 1.199841e-50 | -8.615850e-47 |
Msa0175290 | Msa0618200 | 0.802090 | 6.615527e-49 | -8.615850e-47 |
Msa0175290 | Msa0668460 | 0.803693 | 3.085600e-49 | -8.615850e-47 |
Msa0175290 | Msa0693790 | -0.804165 | 2.462891e-49 | -8.615850e-47 |
Msa0175290 | Msa0707390 | -0.820652 | 6.125137e-53 | -8.615850e-47 |
Msa0175290 | Msa0716420 | 0.823592 | 1.275098e-53 | -8.615850e-47 |
Msa0175290 | Msa0720370 | -0.804932 | 1.703950e-49 | -8.615850e-47 |
Msa0175290 | Msa0746280 | 0.813958 | 1.966415e-51 | -8.615850e-47 |
Msa0175290 | Msa0790170 | 0.922498 | 9.093527e-89 | -8.615850e-47 |
Msa0175290 | Msa0799010 | 0.832215 | 1.073351e-55 | -8.615850e-47 |
Msa0175290 | Msa0818770 | -0.809570 | 1.772532e-50 | -8.615850e-47 |
Msa0175290 | Msa0837420 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
Msa0175290 | Msa0898890 | -0.809416 | 1.912418e-50 | -8.615850e-47 |
Msa0175290 | Msa0901160 | 0.811426 | 7.042440e-51 | -8.615850e-47 |
Msa0175290 | Msa0924150 | 0.847147 | 1.389629e-59 | -8.615850e-47 |
Msa0175290 | Msa0947530 | 0.810244 | 1.269335e-50 | -8.615850e-47 |
Msa0175290 | Msa0963090 | 0.813949 | 1.975236e-51 | -8.615850e-47 |
Msa0175290 | Msa0966720 | 0.851895 | 6.585303e-61 | -8.615850e-47 |
Msa0175290 | Msa1002600 | 0.836711 | 7.971231e-57 | -8.615850e-47 |
Msa0175290 | Msa1033520 | -0.802686 | 4.987117e-49 | -8.615850e-47 |
Msa0175290 | Msa1038210 | 0.816317 | 5.885651e-52 | -8.615850e-47 |
Msa0175290 | Msa1048750 | 0.817098 | 3.932928e-52 | -8.615850e-47 |
Msa0175290 | Msa1048760 | 0.843533 | 1.321966e-58 | -8.615850e-47 |
Msa0175290 | Msa1069660 | 0.819773 | 9.739235e-53 | -8.615850e-47 |
Msa0175290 | Msa1084500 | 0.846259 | 2.429690e-59 | -8.615850e-47 |
Msa0175290 | Msa1098720 | 0.820896 | 5.381964e-53 | -8.615850e-47 |
Msa0175290 | Msa1100520 | 0.812414 | 4.291087e-51 | -8.615850e-47 |
Msa0175290 | Msa1100530 | 0.860345 | 2.203623e-63 | -8.615850e-47 |
Msa0175290 | Msa1125790 | 0.849795 | 2.571299e-60 | -8.615850e-47 |
Msa0175290 | Msa1126120 | 0.818726 | 1.686103e-52 | -8.615850e-47 |
Msa0175290 | Msa1135810 | 0.802765 | 4.802564e-49 | -8.615850e-47 |
Msa0175290 | Msa1172130 | 0.850953 | 1.216157e-60 | -8.615850e-47 |
Msa0175290 | Msa1200320 | -0.804551 | 2.045921e-49 | -8.615850e-47 |
Msa0175290 | Msa1207730 | -0.821482 | 3.944857e-53 | -8.615850e-47 |
Msa0175290 | Msa1236070 | 0.819739 | 9.915022e-53 | -8.615850e-47 |
Msa0175290 | Msa1294960 | -0.805412 | 1.351976e-49 | -8.615850e-47 |
Msa0175290 | Msa1298550 | 0.817253 | 3.629804e-52 | -8.615850e-47 |
Msa0175290 | Msa1310690 | -0.802268 | 6.081733e-49 | -8.615850e-47 |
Msa0175290 | Msa1317810 | 0.809357 | 1.969171e-50 | -8.615850e-47 |
Msa0175290 | Msa1330890 | 0.851880 | 6.650654e-61 | -8.615850e-47 |
Msa0175290 | Msa1363700 | -0.811705 | 6.125526e-51 | -8.615850e-47 |
Msa0175290 | Msa1365860 | -0.826718 | 2.326617e-54 | -8.615850e-47 |
Msa0175290 | Msa1371090 | -0.808489 | 3.019689e-50 | -8.615850e-47 |
Msa0175290 | Msa1418960 | 0.894031 | 3.614528e-75 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175290 | MtrunA17_Chr1g0196141 | 93.720 | 207 | 11 | 1 | 1 | 205 | 1 | 207 | 8.22e-108 | 308 |
Msa0175290 | MtrunA17_Chr7g0268561 | 68.317 | 202 | 56 | 3 | 1 | 196 | 1 | 200 | 1.86e-68 | 208 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0175290 | AT4G03120.1 | 63.043 | 138 | 30 | 4 | 1 | 137 | 1 | 118 | 2.13e-44 | 147 |
Find 108 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTATTGTTGTTGTTGAATA+AGG | 0.184258 | 1_4:+61191543 | None:intergenic |
TATTTAGCTGACCTGGTATC+TGG | 0.201831 | 1_4:+61188709 | None:intergenic |
CCTCGACCTTTACCTGTTCC+TGG | 0.225295 | 1_4:-61189262 | Msa0175290:CDS |
TTGTTGTGTAAATTATTAAA+TGG | 0.248761 | 1_4:-61188130 | Msa0175290:three_prime_UTR |
TTAGTTGCGTGTAAATTATT+TGG | 0.249582 | 1_4:-61188089 | Msa0175290:three_prime_UTR |
GTTAGAAAGCAGCATAATTC+TGG | 0.274012 | 1_4:-61189614 | Msa0175290:CDS |
TCTGAATATGGCCAAATATA+TGG | 0.293240 | 1_4:+61188218 | None:intergenic |
ATCGAGAAAGTTCCACAGTT+TGG | 0.303587 | 1_4:-61191617 | Msa0175290:five_prime_UTR |
CCGTTGATCAATTAAACTTT+GGG | 0.329708 | 1_4:+61189444 | None:intergenic |
TTCTAATGGTGCTCCCTCTA+TGG | 0.335322 | 1_4:-61188622 | Msa0175290:CDS |
ACTCGCACAAGCCATATATT+TGG | 0.335520 | 1_4:-61188229 | Msa0175290:three_prime_UTR |
GTACATGGTCTCTCTGAATA+TGG | 0.340917 | 1_4:+61188206 | None:intergenic |
TCCGTTGATCAATTAAACTT+TGG | 0.357282 | 1_4:+61189443 | None:intergenic |
TCGAGAAAGTTCCACAGTTT+GGG | 0.362917 | 1_4:-61191616 | Msa0175290:five_prime_UTR |
GGTGGTGCTGTGGTGCTTCC+AGG | 0.370818 | 1_4:+61188645 | None:intergenic |
GGCATTGGTGGTTGACCTCC+AGG | 0.381491 | 1_4:+61189304 | None:intergenic |
AATCCACCGGCACCATCATC+TGG | 0.382484 | 1_4:-61188576 | Msa0175290:CDS |
ATTTAGCTGACCTGGTATCT+GGG | 0.382496 | 1_4:+61188710 | None:intergenic |
GAAGAAAACAGGCTATTTGC+AGG | 0.396518 | 1_4:-61188402 | Msa0175290:three_prime_UTR |
CTCGACCTTTACCTGTTCCT+GGG | 0.409983 | 1_4:-61189261 | Msa0175290:CDS |
GGCAATACAGGAGGAAGGTT+TGG | 0.410837 | 1_4:+61189346 | None:intergenic |
TTGAGCATTGGAATTGGAAT+TGG | 0.414958 | 1_4:+61188539 | None:intergenic |
TCACCTGGTGCCCCAGGAAC+AGG | 0.415915 | 1_4:+61189250 | None:intergenic |
TCTCATTTGTTTACTGAATG+AGG | 0.420396 | 1_4:-61188252 | Msa0175290:three_prime_UTR |
ATCATTTGTGGCATGGTGTT+AGG | 0.420752 | 1_4:+61188750 | None:intergenic |
AGGTGCTTGAGCATTGGAAT+TGG | 0.425185 | 1_4:+61188533 | None:intergenic |
TTCTAATAATTTAAAGTACA+TGG | 0.431090 | 1_4:+61188191 | None:intergenic |
GGAGCGAATGAAGGTGGCCT+TGG | 0.436210 | 1_4:+61188681 | None:intergenic |
TGCTTCCAGGAACTGTTGGT+GGG | 0.436884 | 1_4:+61188658 | None:intergenic |
TGTGGGTTATAATAATCTAA+TGG | 0.444341 | 1_4:-61189377 | Msa0175290:CDS |
GTGCTTCCAGGAACTGTTGG+TGG | 0.445166 | 1_4:+61188657 | None:intergenic |
TGTGCTTTCAGGCTAATGTA+AGG | 0.448575 | 1_4:-61189498 | Msa0175290:intron |
CAACGGATCAAAGAACATCT+TGG | 0.452716 | 1_4:-61189427 | Msa0175290:CDS |
CCAGGTCATTGATTGCTCTC+AGG | 0.456760 | 1_4:+61188513 | None:intergenic |
CTTCCAGGAACTGTTGGTGG+GGG | 0.460489 | 1_4:+61188660 | None:intergenic |
GTGGTGCTTCCAGGAACTGT+TGG | 0.469297 | 1_4:+61188654 | None:intergenic |
CGGTGGATTGGCTTGATACA+TGG | 0.471791 | 1_4:+61188590 | None:intergenic |
CGAATGAAGGTGGCCTTGGT+AGG | 0.473183 | 1_4:+61188685 | None:intergenic |
AACGGATCAAAGAACATCTT+GGG | 0.474763 | 1_4:-61189426 | Msa0175290:CDS |
ATAGAGGGAGCACCATTAGA+AGG | 0.475238 | 1_4:+61188624 | None:intergenic |
ACCACAGCACCACCTTCTAA+TGG | 0.475930 | 1_4:-61188636 | Msa0175290:CDS |
CCGTAGCTCAGGAAGAAAAC+AGG | 0.479414 | 1_4:-61188413 | Msa0175290:three_prime_UTR |
CCAGGTGGAGGCATCATTTG+TGG | 0.479641 | 1_4:+61188738 | None:intergenic |
GGTGGTTGACCTCCAGGAAT+GGG | 0.482419 | 1_4:+61189310 | None:intergenic |
CTCCAGGAATGGGAAATCTC+GGG | 0.485227 | 1_4:+61189320 | None:intergenic |
TTACCTGTTCCTGGGGCACC+AGG | 0.487603 | 1_4:-61189253 | Msa0175290:intron |
TTCTTCAAATTGCTGATAGT+AGG | 0.492796 | 1_4:+61189474 | None:intergenic |
GCTCTCAGGTGCTTGAGCAT+TGG | 0.493534 | 1_4:+61188527 | None:intergenic |
AGATGATGGTGCCGGTGGAT+TGG | 0.502122 | 1_4:+61188578 | None:intergenic |
GGCATGAGAGGTCTGAATCC+TGG | 0.508100 | 1_4:+61189283 | None:intergenic |
TGGTGGTTGACCTCCAGGAA+TGG | 0.511144 | 1_4:+61189309 | None:intergenic |
ACAGGCTATTTGCAGGGACT+CGG | 0.513648 | 1_4:-61188395 | Msa0175290:three_prime_UTR |
CATGGCTGATGATGCCATAG+AGG | 0.518907 | 1_4:+61188608 | None:intergenic |
CCTCCAGGAATGGGAAATCT+CGG | 0.519818 | 1_4:+61189319 | None:intergenic |
TTTAGCTGACCTGGTATCTG+GGG | 0.521283 | 1_4:+61188711 | None:intergenic |
GCACCATCATCTGGAGGGTA+TGG | 0.522073 | 1_4:-61188567 | Msa0175290:CDS |
TGATGAAAGGAGGTTGATGC+AGG | 0.524369 | 1_4:+61191576 | None:intergenic |
TTATGCTGCTTTCTAACAGA+TGG | 0.527012 | 1_4:+61189620 | None:intergenic |
GCTTCCAGGAACTGTTGGTG+GGG | 0.536029 | 1_4:+61188659 | None:intergenic |
GGAGGTCAACCACCAATGCC+AGG | 0.536193 | 1_4:-61189301 | Msa0175290:CDS |
AAACATTCACCTGGTGCCCC+AGG | 0.539144 | 1_4:+61189244 | None:intergenic |
CCCAAAGTTTAATTGATCAA+CGG | 0.547338 | 1_4:-61189444 | Msa0175290:CDS |
GGTGCCCCAGGAACAGGTAA+AGG | 0.553270 | 1_4:+61189256 | None:intergenic |
TTACCATACCCTCCAGATGA+TGG | 0.555923 | 1_4:+61188564 | None:intergenic |
GGTAGGGTATTTAGCTGACC+TGG | 0.559827 | 1_4:+61188702 | None:intergenic |
GGTCTGAATCCTGGCATTGG+TGG | 0.562709 | 1_4:+61189292 | None:intergenic |
TTAGCTGACCTGGTATCTGG+GGG | 0.565149 | 1_4:+61188712 | None:intergenic |
GCGTGTAAATTATTTGGCAT+AGG | 0.568882 | 1_4:-61188083 | Msa0175290:three_prime_UTR |
CCAGGAACAGGTAAAGGTCG+AGG | 0.570796 | 1_4:+61189262 | None:intergenic |
CCTCCAGATGATGGTGCCGG+TGG | 0.578973 | 1_4:+61188573 | None:intergenic |
TACCCTCCAGATGATGGTGC+CGG | 0.589060 | 1_4:+61188570 | None:intergenic |
CACAAGTTAGAAGAAGATGA+AGG | 0.589879 | 1_4:+61191494 | None:intergenic |
GAATGAAGGTGGCCTTGGTA+GGG | 0.590337 | 1_4:+61188686 | None:intergenic |
AGGAACTGATCACTGATGAA+AGG | 0.592541 | 1_4:+61191563 | None:intergenic |
GCACTCAAACAGCCATGCCT+CGG | 0.592680 | 1_4:-61191434 | Msa0175290:intron |
CCTGAGAGCAATCAATGACC+TGG | 0.596965 | 1_4:-61188513 | Msa0175290:exon |
TGGAGGCATCATTTGTGGCA+TGG | 0.600454 | 1_4:+61188743 | None:intergenic |
CCACAAATGATGCCTCCACC+TGG | 0.601830 | 1_4:-61188738 | Msa0175290:CDS |
GGAAGCAACTTACAGAATCG+TGG | 0.602897 | 1_4:+61191288 | None:intergenic |
CAACAACAACAATAAGCTGA+AGG | 0.608857 | 1_4:-61191536 | Msa0175290:five_prime_UTR |
AGAGGTCTGAATCCTGGCAT+TGG | 0.609422 | 1_4:+61189289 | None:intergenic |
GAAGCAACTTACAGAATCGT+GGG | 0.610854 | 1_4:+61191289 | None:intergenic |
TGAGTTGCAGTACCGAGGCA+TGG | 0.613245 | 1_4:+61191422 | None:intergenic |
TCCAGGAATGGGAAATCTCG+GGG | 0.614934 | 1_4:+61189321 | None:intergenic |
GAAGAAGATGAAGGATGATG+AGG | 0.619278 | 1_4:+61191503 | None:intergenic |
ATGGCTGATGATGCCATAGA+GGG | 0.623817 | 1_4:+61188609 | None:intergenic |
ACCATTAGAAGGTGGTGCTG+TGG | 0.626785 | 1_4:+61188635 | None:intergenic |
AAGAAAACAGGCTATTTGCA+GGG | 0.627036 | 1_4:-61188401 | Msa0175290:three_prime_UTR |
CCACCGGCACCATCATCTGG+AGG | 0.638593 | 1_4:-61188573 | Msa0175290:CDS |
AATTTCATACAAGTTTGACC+AGG | 0.641105 | 1_4:+61188495 | None:intergenic |
TCGACCTTTACCTGTTCCTG+GGG | 0.642630 | 1_4:-61189260 | Msa0175290:CDS |
CATGTATCAAGCCAATCCAC+CGG | 0.647787 | 1_4:-61188589 | Msa0175290:CDS |
TTGTGGCATGGTGTTAGGTG+CGG | 0.648556 | 1_4:+61188755 | None:intergenic |
CACCGGCACCATCATCTGGA+GGG | 0.651394 | 1_4:-61188572 | Msa0175290:CDS |
GGGGTGGCAATACAGGAGGA+AGG | 0.651955 | 1_4:+61189341 | None:intergenic |
AACTGATCACTGATGAAAGG+AGG | 0.654016 | 1_4:+61191566 | None:intergenic |
GGCATGGTGTTAGGTGCGGA+AGG | 0.654135 | 1_4:+61188759 | None:intergenic |
GGTAAAGGTCGAGGCATGAG+AGG | 0.654248 | 1_4:+61189271 | None:intergenic |
TCATTCAGTAAACAAATGAG+AGG | 0.660707 | 1_4:+61188254 | None:intergenic |
ATGCGTCTATGCCCAAACTG+TGG | 0.663756 | 1_4:+61191605 | None:intergenic |
CCGAGATTTCCCATTCCTGG+AGG | 0.676581 | 1_4:-61189319 | Msa0175290:CDS |
GAGGGAGCACCATTAGAAGG+TGG | 0.677405 | 1_4:+61188627 | None:intergenic |
TAGCTGACCTGGTATCTGGG+GGG | 0.680021 | 1_4:+61188713 | None:intergenic |
GTCAGCTAAATACCCTACCA+AGG | 0.684554 | 1_4:-61188698 | Msa0175290:CDS |
CCAGGAATGGGAAATCTCGG+GGG | 0.691329 | 1_4:+61189322 | None:intergenic |
AGAACATCTTGGGCAAGCTG+CGG | 0.693174 | 1_4:-61189416 | Msa0175290:CDS |
TAATTCTGGTTATAAACACA+AGG | 0.696885 | 1_4:-61189600 | Msa0175290:intron |
ATGGAAAATAGTATCGAACA+AGG | 0.711480 | 1_4:+61188436 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATAATCAAAATCAAAAT+TGG | - | chr1_4:61189466-61189485 | Msa0175290:CDS | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189732-61189751 | Msa0175290:intron | 100.0% |
!!! | ATATCACATAAAACATTTTA+AGG | + | chr1_4:61188582-61188601 | None:intergenic | 15.0% |
!!! | ATCTTGAAAGTATAATTTAA+TGG | + | chr1_4:61190558-61190577 | None:intergenic | 15.0% |
!! | ATATGATAGAATAAATTATC+CGG | + | chr1_4:61190867-61190886 | None:intergenic | 15.0% |
!!! | TTCTAATAATTTAAAGTACA+TGG | + | chr1_4:61191496-61191515 | None:intergenic | 15.0% |
!! | TTGTTGTGTAAATTATTAAA+TGG | - | chr1_4:61191554-61191573 | Msa0175290:five_prime_UTR | 15.0% |
!! | AAATGTTATGAAATGAATGA+AGG | + | chr1_4:61188313-61188332 | None:intergenic | 20.0% |
!! | TGCTTAATTTACTTTAATGT+TGG | + | chr1_4:61188696-61188715 | None:intergenic | 20.0% |
!! | AGAAAAGATTATGGAAAAAT+AGG | - | chr1_4:61188809-61188828 | Msa0175290:intron | 20.0% |
!! | TAATGAGTTAGATTGAAATA+TGG | - | chr1_4:61188975-61188994 | Msa0175290:intron | 20.0% |
!!! | AAATTTTGAACACAACAAAA+CGG | + | chr1_4:61189260-61189279 | None:intergenic | 20.0% |
!!! | AAATTTTGAACACAACAAAA+CGG | + | chr1_4:61189260-61189279 | None:intergenic | 20.0% |
!! | AATGAAAGTTGAAATTAGAA+AGG | - | chr1_4:61189539-61189558 | Msa0175290:intron | 20.0% |
!! | ATGAAAGTTGAAATTAGAAA+GGG | - | chr1_4:61189540-61189559 | Msa0175290:intron | 20.0% |
!! | TACGTATAATATCCATTAAA+CGG | - | chr1_4:61189664-61189683 | Msa0175290:intron | 20.0% |
!!! | ATAAAAGTGTATTTCAATCT+AGG | - | chr1_4:61190136-61190155 | Msa0175290:intron | 20.0% |
!! | AACATGATATTCAAACTAAA+AGG | + | chr1_4:61190649-61190668 | None:intergenic | 20.0% |
!! | TCTATCATATCTAATATAAG+TGG | - | chr1_4:61190877-61190896 | Msa0175290:intron | 20.0% |
!!! | TAATATAAGTGGTTTTCAAT+TGG | - | chr1_4:61190888-61190907 | Msa0175290:intron | 20.0% |
!! | CTTATTGTTGTTGTTGAATA+AGG | + | chr1_4:61188144-61188163 | None:intergenic | 25.0% |
! | ATGTTGAAATCAAAGTGAAA+GGG | + | chr1_4:61188444-61188463 | None:intergenic | 25.0% |
! | TATGTTGAAATCAAAGTGAA+AGG | + | chr1_4:61188445-61188464 | None:intergenic | 25.0% |
!! | TCCATAATCTTTTCTACTAT+GGG | + | chr1_4:61188804-61188823 | None:intergenic | 25.0% |
!! | TTCCATAATCTTTTCTACTA+TGG | + | chr1_4:61188805-61188824 | None:intergenic | 25.0% |
! | ACCCTTTCAAATAATAAAGT+TGG | - | chr1_4:61189288-61189307 | Msa0175290:CDS | 25.0% |
! | GCCAACTTTATTATTTGAAA+GGG | + | chr1_4:61189292-61189311 | None:intergenic | 25.0% |
! | TTCACATCAATGAATTCATA+CGG | + | chr1_4:61189328-61189347 | None:intergenic | 25.0% |
! | ACCCTTTCAAATAATAAAGT+TGG | - | chr1_4:61189288-61189307 | Msa0175290:CDS | 25.0% |
! | GCCAACTTTATTATTTGAAA+GGG | + | chr1_4:61189292-61189311 | None:intergenic | 25.0% |
! | TTCACATCAATGAATTCATA+CGG | + | chr1_4:61189328-61189347 | None:intergenic | 25.0% |
! | CTAATTTCAACTTTCATTTC+TGG | + | chr1_4:61189537-61189556 | None:intergenic | 25.0% |
! | TATAATATCCATTAAACGGT+CGG | - | chr1_4:61189668-61189687 | Msa0175290:intron | 25.0% |
!! | AGAAATTAATCTTTTGTTGC+TGG | + | chr1_4:61189916-61189935 | None:intergenic | 25.0% |
! | TCTTCAGAAACAATAAGAAA+GGG | + | chr1_4:61189947-61189966 | None:intergenic | 25.0% |
! | TTCTTCAGAAACAATAAGAA+AGG | + | chr1_4:61189948-61189967 | None:intergenic | 25.0% |
!! | TAATTCTGGTTATAAACACA+AGG | - | chr1_4:61190084-61190103 | Msa0175290:intron | 25.0% |
!! | TGTGGGTTATAATAATCTAA+TGG | - | chr1_4:61190307-61190326 | Msa0175290:intron | 25.0% |
! | CAGTCAAATACTTCAATAAT+AGG | + | chr1_4:61190507-61190526 | None:intergenic | 25.0% |
! | AATGAAAGCCAAAAATAATG+TGG | + | chr1_4:61190616-61190635 | None:intergenic | 25.0% |
! | AAAGGTTACATGTAAAGAAT+AGG | + | chr1_4:61190718-61190737 | None:intergenic | 25.0% |
!!! | TATGTTTTGGTTTGGTTTTT+TGG | - | chr1_4:61190754-61190773 | Msa0175290:intron | 25.0% |
!! | TATGTTCGATTTTTATGACT+AGG | - | chr1_4:61191392-61191411 | Msa0175290:intron | 25.0% |
! | TTAGTTGCGTGTAAATTATT+TGG | - | chr1_4:61191595-61191614 | Msa0175290:five_prime_UTR | 25.0% |
AATGAAGGTTTGTGTGATTT+AGG | + | chr1_4:61188298-61188317 | None:intergenic | 30.0% | |
ATTACTTGTCTTGCAATTGT+TGG | + | chr1_4:61188640-61188659 | None:intergenic | 30.0% | |
CAAGACAAGTAATGTTGTAT+GGG | - | chr1_4:61188647-61188666 | Msa0175290:CDS | 30.0% | |
AAAAACATTAGAGACAGAGT+TGG | - | chr1_4:61188772-61188791 | Msa0175290:intron | 30.0% | |
AAAACATTAGAGACAGAGTT+GGG | - | chr1_4:61188773-61188792 | Msa0175290:intron | 30.0% | |
! | ATAATCTTTTCTACTATGGG+TGG | + | chr1_4:61188801-61188820 | None:intergenic | 30.0% |
ACCCATAGTAGAAAAGATTA+TGG | - | chr1_4:61188800-61188819 | Msa0175290:intron | 30.0% | |
TATGGAAAAATAGGTTTACG+TGG | - | chr1_4:61188818-61188837 | Msa0175290:intron | 30.0% | |
AAAAATAGGTTTACGTGGTT+TGG | - | chr1_4:61188823-61188842 | Msa0175290:intron | 30.0% | |
AAAATAGGTTTACGTGGTTT+GGG | - | chr1_4:61188824-61188843 | Msa0175290:intron | 30.0% | |
! | GACTTGTAGATTTTGTAGTA+AGG | - | chr1_4:61188860-61188879 | Msa0175290:intron | 30.0% |
GGCCAACTTTATTATTTGAA+AGG | + | chr1_4:61189293-61189312 | None:intergenic | 30.0% | |
CAAATAATAAAGTTGGCCAA+TGG | - | chr1_4:61189295-61189314 | Msa0175290:CDS | 30.0% | |
GGCCAACTTTATTATTTGAA+AGG | + | chr1_4:61189293-61189312 | None:intergenic | 30.0% | |
CAAATAATAAAGTTGGCCAA+TGG | - | chr1_4:61189295-61189314 | Msa0175290:CDS | 30.0% | |
AAATCAAAATTGGAAGACTC+TGG | - | chr1_4:61189476-61189495 | Msa0175290:CDS | 30.0% | |
AAGAACAAACAGAAGTTAGA+CGG | - | chr1_4:61189590-61189609 | Msa0175290:intron | 30.0% | |
TATCGAAAATGTTTATCCTC+AGG | + | chr1_4:61189646-61189665 | None:intergenic | 30.0% | |
CAATCTAGGTCATATTTATG+AGG | - | chr1_4:61190150-61190169 | Msa0175290:intron | 30.0% | |
TGATATGTATTTGTGCTTTC+AGG | - | chr1_4:61190175-61190194 | Msa0175290:intron | 30.0% | |
TTCTTCAAATTGCTGATAGT+AGG | + | chr1_4:61190213-61190232 | None:intergenic | 30.0% | |
CCGTTGATCAATTAAACTTT+GGG | + | chr1_4:61190243-61190262 | None:intergenic | 30.0% | |
CCCAAAGTTTAATTGATCAA+CGG | - | chr1_4:61190240-61190259 | Msa0175290:intron | 30.0% | |
TCCGTTGATCAATTAAACTT+TGG | + | chr1_4:61190244-61190263 | None:intergenic | 30.0% | |
CATGATTATGCACATCTTAA+TGG | - | chr1_4:61190586-61190605 | Msa0175290:intron | 30.0% | |
! | ATGGCTAACCACATTATTTT+TGG | - | chr1_4:61190605-61190624 | Msa0175290:intron | 30.0% |
! | CTATATGTTACTTGTGTCTT+TGG | - | chr1_4:61190669-61190688 | Msa0175290:intron | 30.0% |
! | GTTTTCAATTGGAGTTTTCA+GGG | - | chr1_4:61190899-61190918 | Msa0175290:intron | 30.0% |
AATTTCATACAAGTTTGACC+AGG | + | chr1_4:61191192-61191211 | None:intergenic | 30.0% | |
! | ATGGAAAATAGTATCGAACA+AGG | + | chr1_4:61191251-61191270 | None:intergenic | 30.0% |
TCATTCAGTAAACAAATGAG+AGG | + | chr1_4:61191433-61191452 | None:intergenic | 30.0% | |
TCTCATTTGTTTACTGAATG+AGG | - | chr1_4:61191432-61191451 | Msa0175290:intron | 30.0% | |
TCTGAATATGGCCAAATATA+TGG | + | chr1_4:61191469-61191488 | None:intergenic | 30.0% | |
CAACAACAACAATAAGCTGA+AGG | - | chr1_4:61188148-61188167 | Msa0175290:three_prime_UTR | 35.0% | |
CACAAGTTAGAAGAAGATGA+AGG | + | chr1_4:61188193-61188212 | None:intergenic | 35.0% | |
!! | TTTGATTTTGCCCCATAACT+AGG | - | chr1_4:61188217-61188236 | Msa0175290:three_prime_UTR | 35.0% |
! | TTGATTTTGCCCCATAACTA+GGG | - | chr1_4:61188218-61188237 | Msa0175290:three_prime_UTR | 35.0% |
AGCAAAAAACCCTAGTTATG+GGG | + | chr1_4:61188230-61188249 | None:intergenic | 35.0% | |
CAGCAAAAAACCCTAGTTAT+GGG | + | chr1_4:61188231-61188250 | None:intergenic | 35.0% | |
TTTGTGTGATTTAGGCTTGA+AGG | + | chr1_4:61188290-61188309 | None:intergenic | 35.0% | |
! | TTTCTTCGATTTTGCTTTGC+AGG | - | chr1_4:61188341-61188360 | Msa0175290:three_prime_UTR | 35.0% |
ACATAATTAGCGATTGGTGA+GGG | + | chr1_4:61188420-61188439 | None:intergenic | 35.0% | |
AACATAATTAGCGATTGGTG+AGG | + | chr1_4:61188421-61188440 | None:intergenic | 35.0% | |
AAGGGAACATAATTAGCGAT+TGG | + | chr1_4:61188426-61188445 | None:intergenic | 35.0% | |
ATGTGCACAACTACATTATG+TGG | - | chr1_4:61188479-61188498 | Msa0175290:three_prime_UTR | 35.0% | |
GCAAGACAAGTAATGTTGTA+TGG | - | chr1_4:61188646-61188665 | Msa0175290:CDS | 35.0% | |
TAAATTAAGCAGCAGAGATG+AGG | - | chr1_4:61188705-61188724 | Msa0175290:CDS | 35.0% | |
AGTAAGGAGAGTAGATTAGA+TGG | - | chr1_4:61188876-61188895 | Msa0175290:intron | 35.0% | |
CAATGAATTCATACGGTAGA+TGG | + | chr1_4:61189321-61189340 | None:intergenic | 35.0% | |
CAATGAATTCATACGGTAGA+TGG | + | chr1_4:61189321-61189340 | None:intergenic | 35.0% | |
GGGATTATGATTCTTGCTTA+TGG | - | chr1_4:61189560-61189579 | Msa0175290:intron | 35.0% | |
TCCAAAACCCTTAATTCCAA+TGG | - | chr1_4:61189807-61189826 | Msa0175290:intron | 35.0% | |
! | ACCATTGGAATTAAGGGTTT+TGG | + | chr1_4:61189811-61189830 | None:intergenic | 35.0% |
AAACCCTTAATTCCAATGGT+AGG | - | chr1_4:61189811-61189830 | Msa0175290:intron | 35.0% | |
AACCCTTAATTCCAATGGTA+GGG | - | chr1_4:61189812-61189831 | Msa0175290:intron | 35.0% | |
TTCCCTACCATTGGAATTAA+GGG | + | chr1_4:61189817-61189836 | None:intergenic | 35.0% | |
TTTCCCTACCATTGGAATTA+AGG | + | chr1_4:61189818-61189837 | None:intergenic | 35.0% | |
CTAACATGCACTAGTTGTTT+AGG | + | chr1_4:61189860-61189879 | None:intergenic | 35.0% | |
!! | TTATGCTGCTTTCTAACAGA+TGG | + | chr1_4:61190067-61190086 | None:intergenic | 35.0% |
GTTAGAAAGCAGCATAATTC+TGG | - | chr1_4:61190070-61190089 | Msa0175290:intron | 35.0% | |
AACGGATCAAAGAACATCTT+GGG | - | chr1_4:61190258-61190277 | Msa0175290:intron | 35.0% | |
TACAAGCGCAACTAAAAGAA+AGG | + | chr1_4:61190736-61190755 | None:intergenic | 35.0% | |
! | TTAGTTGCGCTTGTATGTTT+TGG | - | chr1_4:61190741-61190760 | Msa0175290:intron | 35.0% |
CGGTTTATAATGCTTGAACT+GGG | + | chr1_4:61190847-61190866 | None:intergenic | 35.0% | |
CCAGTTCAAGCATTATAAAC+CGG | - | chr1_4:61190845-61190864 | Msa0175290:intron | 35.0% | |
! | GGTTTTCAATTGGAGTTTTC+AGG | - | chr1_4:61190898-61190917 | Msa0175290:intron | 35.0% |
!! | TTGAGCATTGGAATTGGAAT+TGG | + | chr1_4:61191148-61191167 | None:intergenic | 35.0% |
AAGAAAACAGGCTATTTGCA+GGG | - | chr1_4:61191283-61191302 | Msa0175290:intron | 35.0% | |
GCGTGTAAATTATTTGGCAT+AGG | - | chr1_4:61191601-61191620 | Msa0175290:five_prime_UTR | 35.0% | |
ATCGAGAAAGTTCCACAGTT+TGG | - | chr1_4:61188067-61188086 | Msa0175290:three_prime_UTR | 40.0% | |
TCGAGAAAGTTCCACAGTTT+GGG | - | chr1_4:61188068-61188087 | Msa0175290:three_prime_UTR | 40.0% | |
AACTGATCACTGATGAAAGG+AGG | + | chr1_4:61188121-61188140 | None:intergenic | 40.0% | |
AGGAACTGATCACTGATGAA+AGG | + | chr1_4:61188124-61188143 | None:intergenic | 40.0% | |
GAAGAAGATGAAGGATGATG+AGG | + | chr1_4:61188184-61188203 | None:intergenic | 40.0% | |
GCAGCAAAAAACCCTAGTTA+TGG | + | chr1_4:61188232-61188251 | None:intergenic | 40.0% | |
GAAGCAACTTACAGAATCGT+GGG | + | chr1_4:61188398-61188417 | None:intergenic | 40.0% | |
CTTACAGTGTTTCCAAACGA+CGG | - | chr1_4:61188552-61188571 | Msa0175290:CDS | 40.0% | |
! | AAAGTACTCGCTGAAGTTGA+AGG | - | chr1_4:61188603-61188622 | Msa0175290:CDS | 40.0% |
AAGTACTCGCTGAAGTTGAA+GGG | - | chr1_4:61188604-61188623 | Msa0175290:CDS | 40.0% | |
!! | TAATGTTGGTTCTTTCCAGC+CGG | + | chr1_4:61188682-61188701 | None:intergenic | 40.0% |
AAGGAGAGTAGATTAGATGG+AGG | - | chr1_4:61188879-61188898 | Msa0175290:intron | 40.0% | |
GAGGATAGTCACATTACTAG+AGG | - | chr1_4:61188898-61188917 | Msa0175290:intron | 40.0% | |
ACATTACTAGAGGCAGAGAA+AGG | - | chr1_4:61188908-61188927 | Msa0175290:intron | 40.0% | |
! | AAGCCTTATACCACTACATG+GGG | + | chr1_4:61189044-61189063 | None:intergenic | 40.0% |
! | CAAGCCTTATACCACTACAT+GGG | + | chr1_4:61189045-61189064 | None:intergenic | 40.0% |
! | TCAAGCCTTATACCACTACA+TGG | + | chr1_4:61189046-61189065 | None:intergenic | 40.0% |
!! | TTTTTGTTTCCTTCCACACC+CGG | - | chr1_4:61189072-61189091 | Msa0175290:intron | 40.0% |
CAGAAGATAACCATGTAGGT+GGG | + | chr1_4:61189099-61189118 | None:intergenic | 40.0% | |
ACAGAAGATAACCATGTAGG+TGG | + | chr1_4:61189100-61189119 | None:intergenic | 40.0% | |
ACCTACATGGTTATCTTCTG+TGG | - | chr1_4:61189099-61189118 | Msa0175290:intron | 40.0% | |
ACCACAGAAGATAACCATGT+AGG | + | chr1_4:61189103-61189122 | None:intergenic | 40.0% | |
! | CTTCTGTGGTAGCTAGTTTA+AGG | - | chr1_4:61189113-61189132 | Msa0175290:intron | 40.0% |
CGGTGAAATGATGTTCTCTT+GGG | + | chr1_4:61189240-61189259 | None:intergenic | 40.0% | |
ACGGTGAAATGATGTTCTCT+TGG | + | chr1_4:61189241-61189260 | None:intergenic | 40.0% | |
CGGTGAAATGATGTTCTCTT+GGG | + | chr1_4:61189240-61189259 | None:intergenic | 40.0% | |
ACGGTGAAATGATGTTCTCT+TGG | + | chr1_4:61189241-61189260 | None:intergenic | 40.0% | |
!!! | TTTTGTGTTTCTGAAGCCTG+AGG | - | chr1_4:61189627-61189646 | Msa0175290:intron | 40.0% |
ACATGCACTAGTTGTTTAGG+TGG | + | chr1_4:61189857-61189876 | None:intergenic | 40.0% | |
CATATGCAAGTGTCTAGTTG+TGG | + | chr1_4:61190018-61190037 | None:intergenic | 40.0% | |
TGTGCTTTCAGGCTAATGTA+AGG | - | chr1_4:61190186-61190205 | Msa0175290:intron | 40.0% | |
CAACGGATCAAAGAACATCT+TGG | - | chr1_4:61190257-61190276 | Msa0175290:intron | 40.0% | |
TATAAAAGCCGCGAAAGATG+TGG | + | chr1_4:61190472-61190491 | None:intergenic | 40.0% | |
!!! | TGCGCTTGTATGTTTTGGTT+TGG | - | chr1_4:61190746-61190765 | Msa0175290:intron | 40.0% |
! | CTTTCTTGTGTCGAGAGTTT+TGG | - | chr1_4:61190809-61190828 | Msa0175290:intron | 40.0% |
!!! | TGTCGAGAGTTTTGGAGAAT+CGG | - | chr1_4:61190817-61190836 | Msa0175290:intron | 40.0% |
CCGGTTTATAATGCTTGAAC+TGG | + | chr1_4:61190848-61190867 | None:intergenic | 40.0% | |
ATCATTTGTGGCATGGTGTT+AGG | + | chr1_4:61190937-61190956 | None:intergenic | 40.0% | |
ATTTAGCTGACCTGGTATCT+GGG | + | chr1_4:61190977-61190996 | None:intergenic | 40.0% | |
TATTTAGCTGACCTGGTATC+TGG | + | chr1_4:61190978-61190997 | None:intergenic | 40.0% | |
GAAGAAAACAGGCTATTTGC+AGG | - | chr1_4:61191282-61191301 | Msa0175290:intron | 40.0% | |
ACTCGCACAAGCCATATATT+TGG | - | chr1_4:61191455-61191474 | Msa0175290:five_prime_UTR | 40.0% | |
GTACATGGTCTCTCTGAATA+TGG | + | chr1_4:61191481-61191500 | None:intergenic | 40.0% | |
!! | TGATGAAAGGAGGTTGATGC+AGG | + | chr1_4:61188111-61188130 | None:intergenic | 45.0% |
GGAAGCAACTTACAGAATCG+TGG | + | chr1_4:61188399-61188418 | None:intergenic | 45.0% | |
!!! | TTTTAAGGCCTTCCGTCGTT+TGG | + | chr1_4:61188567-61188586 | None:intergenic | 45.0% |
TACTAGAGGCAGAGAAAGGA+AGG | - | chr1_4:61188912-61188931 | Msa0175290:intron | 45.0% | |
TTCATACGGTAGATGGCCAT+TGG | + | chr1_4:61189314-61189333 | None:intergenic | 45.0% | |
TTCATACGGTAGATGGCCAT+TGG | + | chr1_4:61189314-61189333 | None:intergenic | 45.0% | |
CATTAAACGGTCGGAACCAT+GGG | - | chr1_4:61189677-61189696 | Msa0175290:intron | 45.0% | |
ATTAAACGGTCGGAACCATG+GGG | - | chr1_4:61189678-61189697 | Msa0175290:intron | 45.0% | |
TGGATGGGAAAACATTCACC+TGG | + | chr1_4:61190452-61190471 | None:intergenic | 45.0% | |
TTTCCCATCCACATCTTTCG+CGG | - | chr1_4:61190461-61190480 | Msa0175290:intron | 45.0% | |
!!! | GTCGAGAGTTTTGGAGAATC+GGG | - | chr1_4:61190818-61190837 | Msa0175290:intron | 45.0% |
TTTAGCTGACCTGGTATCTG+GGG | + | chr1_4:61190976-61190995 | None:intergenic | 45.0% | |
GTCAGCTAAATACCCTACCA+AGG | - | chr1_4:61190986-61191005 | Msa0175290:intron | 45.0% | |
!! | ATAGAGGGAGCACCATTAGA+AGG | + | chr1_4:61191063-61191082 | None:intergenic | 45.0% |
TTCTAATGGTGCTCCCTCTA+TGG | - | chr1_4:61191062-61191081 | Msa0175290:intron | 45.0% | |
! | ATGGCTGATGATGCCATAGA+GGG | + | chr1_4:61191078-61191097 | None:intergenic | 45.0% |
CATGTATCAAGCCAATCCAC+CGG | - | chr1_4:61191095-61191114 | Msa0175290:intron | 45.0% | |
TTACCATACCCTCCAGATGA+TGG | + | chr1_4:61191123-61191142 | None:intergenic | 45.0% | |
!! | AGGTGCTTGAGCATTGGAAT+TGG | + | chr1_4:61191154-61191173 | None:intergenic | 45.0% |
! | CTATTTTCCATCCGTAGCTC+AGG | - | chr1_4:61191260-61191279 | Msa0175290:intron | 45.0% |
! | TTTTCTTCCTGAGCTACGGA+TGG | + | chr1_4:61191270-61191289 | None:intergenic | 45.0% |
! | CCTGTTTTCTTCCTGAGCTA+CGG | + | chr1_4:61191274-61191293 | None:intergenic | 45.0% |
ATGCGTCTATGCCCAAACTG+TGG | + | chr1_4:61188082-61188101 | None:intergenic | 50.0% | |
CAGTGTTTCCAAACGACGGA+AGG | - | chr1_4:61188556-61188575 | Msa0175290:CDS | 50.0% | |
! | GTTGTATGGGACAGAGTGTC+CGG | - | chr1_4:61188660-61188679 | Msa0175290:CDS | 50.0% |
CAGAGATGAGGTTGTTGCGT+TGG | - | chr1_4:61188717-61188736 | Msa0175290:CDS | 50.0% | |
AGGTTGTTGCGTTGGATGTG+TGG | - | chr1_4:61188725-61188744 | Msa0175290:CDS | 50.0% | |
GGTTGTTGCGTTGGATGTGT+GGG | - | chr1_4:61188726-61188745 | Msa0175290:CDS | 50.0% | |
ACTACATGGGGTCGACTACA+TGG | + | chr1_4:61189032-61189051 | None:intergenic | 50.0% | |
ATGTAGTCGACCCCATGTAG+TGG | - | chr1_4:61189031-61189050 | Msa0175290:intron | 50.0% | |
CGACCCCATGTAGTGGTATA+AGG | - | chr1_4:61189038-61189057 | Msa0175290:intron | 50.0% | |
ATAACCATGTAGGTGGGACC+GGG | + | chr1_4:61189093-61189112 | None:intergenic | 50.0% | |
GATAACCATGTAGGTGGGAC+CGG | + | chr1_4:61189094-61189113 | None:intergenic | 50.0% | |
CCATGGTTCCGACCGTTTAA+TGG | + | chr1_4:61189679-61189698 | None:intergenic | 50.0% | |
CCATTAAACGGTCGGAACCA+TGG | - | chr1_4:61189676-61189695 | Msa0175290:intron | 50.0% | |
AGAGAGTGACTAGGAGGGAA+GGG | - | chr1_4:61189712-61189731 | Msa0175290:intron | 50.0% | |
! | GGGGGGGATTATGGTGTTTT+GGG | - | chr1_4:61189770-61189789 | Msa0175290:intron | 50.0% |
GCACAGCATTTCCCTACCAT+TGG | + | chr1_4:61189826-61189845 | None:intergenic | 50.0% | |
AGAACATCTTGGGCAAGCTG+CGG | - | chr1_4:61190268-61190287 | Msa0175290:intron | 50.0% | |
!!! | GCTTTTCAGCAGGTTGGTGT+GGG | - | chr1_4:61190290-61190309 | Msa0175290:intron | 50.0% |
GGCAATACAGGAGGAAGGTT+TGG | + | chr1_4:61190341-61190360 | None:intergenic | 50.0% | |
TCCAGGAATGGGAAATCTCG+GGG | + | chr1_4:61190366-61190385 | None:intergenic | 50.0% | |
CTCCAGGAATGGGAAATCTC+GGG | + | chr1_4:61190367-61190386 | None:intergenic | 50.0% | |
CCTCCAGGAATGGGAAATCT+CGG | + | chr1_4:61190368-61190387 | None:intergenic | 50.0% | |
AGAGGTCTGAATCCTGGCAT+TGG | + | chr1_4:61190398-61190417 | None:intergenic | 50.0% | |
CTCGACCTTTACCTGTTCCT+GGG | - | chr1_4:61190423-61190442 | Msa0175290:intron | 50.0% | |
TCGACCTTTACCTGTTCCTG+GGG | - | chr1_4:61190424-61190443 | Msa0175290:intron | 50.0% | |
AAGCCGCGAAAGATGTGGAT+GGG | + | chr1_4:61190467-61190486 | None:intergenic | 50.0% | |
AAAGCCGCGAAAGATGTGGA+TGG | + | chr1_4:61190468-61190487 | None:intergenic | 50.0% | |
! | TTGTGGCATGGTGTTAGGTG+CGG | + | chr1_4:61190932-61190951 | None:intergenic | 50.0% |
!! | TGGAGGCATCATTTGTGGCA+TGG | + | chr1_4:61190944-61190963 | None:intergenic | 50.0% |
TTAGCTGACCTGGTATCTGG+GGG | + | chr1_4:61190975-61190994 | None:intergenic | 50.0% | |
! | GGTAGGGTATTTAGCTGACC+TGG | + | chr1_4:61190985-61191004 | None:intergenic | 50.0% |
! | GAATGAAGGTGGCCTTGGTA+GGG | + | chr1_4:61191001-61191020 | None:intergenic | 50.0% |
TGCTTCCAGGAACTGTTGGT+GGG | + | chr1_4:61191029-61191048 | None:intergenic | 50.0% | |
ACCACAGCACCACCTTCTAA+TGG | - | chr1_4:61191048-61191067 | Msa0175290:intron | 50.0% | |
! | ACCATTAGAAGGTGGTGCTG+TGG | + | chr1_4:61191052-61191071 | None:intergenic | 50.0% |
! | CATGGCTGATGATGCCATAG+AGG | + | chr1_4:61191079-61191098 | None:intergenic | 50.0% |
!! | CGGTGGATTGGCTTGATACA+TGG | + | chr1_4:61191097-61191116 | None:intergenic | 50.0% |
! | CCAGGTCATTGATTGCTCTC+AGG | + | chr1_4:61191174-61191193 | None:intergenic | 50.0% |
CCTGAGAGCAATCAATGACC+TGG | - | chr1_4:61191171-61191190 | Msa0175290:intron | 50.0% | |
CCGTAGCTCAGGAAGAAAAC+AGG | - | chr1_4:61191271-61191290 | Msa0175290:intron | 50.0% | |
ACAGGCTATTTGCAGGGACT+CGG | - | chr1_4:61191289-61191308 | Msa0175290:intron | 50.0% | |
GCACTCAAACAGCCATGCCT+CGG | - | chr1_4:61188250-61188269 | Msa0175290:three_prime_UTR | 55.0% | |
! | TGAGTTGCAGTACCGAGGCA+TGG | + | chr1_4:61188265-61188284 | None:intergenic | 55.0% |
AGGAGTGAGTTGCAGTACCG+AGG | + | chr1_4:61188270-61188289 | None:intergenic | 55.0% | |
TAGTCACTCTCTCCCCACCA+TGG | + | chr1_4:61189704-61189723 | None:intergenic | 55.0% | |
! | ATGGTGGGGAGAGAGTGACT+AGG | - | chr1_4:61189703-61189722 | Msa0175290:intron | 55.0% |
TGGGGAGAGAGTGACTAGGA+GGG | - | chr1_4:61189707-61189726 | Msa0175290:intron | 55.0% | |
GAGAGAGTGACTAGGAGGGA+AGG | - | chr1_4:61189711-61189730 | Msa0175290:intron | 55.0% | |
GAGAGTGACTAGGAGGGAAG+GGG | - | chr1_4:61189713-61189732 | Msa0175290:intron | 55.0% | |
AGAGTGACTAGGAGGGAAGG+GGG | - | chr1_4:61189714-61189733 | Msa0175290:intron | 55.0% | |
! | GGGGGGGGATTATGGTGTTT+TGG | - | chr1_4:61189769-61189788 | Msa0175290:intron | 55.0% |
TGGTAGGGAAATGCTGTGCG+CGG | - | chr1_4:61189827-61189846 | Msa0175290:intron | 55.0% | |
!!! | GGCTTTTCAGCAGGTTGGTG+TGG | - | chr1_4:61190289-61190308 | Msa0175290:intron | 55.0% |
AATCTCGGGGGTGGCAATAC+AGG | + | chr1_4:61190353-61190372 | None:intergenic | 55.0% | |
CCAGGAATGGGAAATCTCGG+GGG | + | chr1_4:61190365-61190384 | None:intergenic | 55.0% | |
CCGAGATTTCCCATTCCTGG+AGG | - | chr1_4:61190365-61190384 | Msa0175290:intron | 55.0% | |
GGTGGTTGACCTCCAGGAAT+GGG | + | chr1_4:61190377-61190396 | None:intergenic | 55.0% | |
TGGTGGTTGACCTCCAGGAA+TGG | + | chr1_4:61190378-61190397 | None:intergenic | 55.0% | |
! | GGTCTGAATCCTGGCATTGG+TGG | + | chr1_4:61190395-61190414 | None:intergenic | 55.0% |
GGCATGAGAGGTCTGAATCC+TGG | + | chr1_4:61190404-61190423 | None:intergenic | 55.0% | |
GGTAAAGGTCGAGGCATGAG+AGG | + | chr1_4:61190416-61190435 | None:intergenic | 55.0% | |
CCAGGAACAGGTAAAGGTCG+AGG | + | chr1_4:61190425-61190444 | None:intergenic | 55.0% | |
CCTCGACCTTTACCTGTTCC+TGG | - | chr1_4:61190422-61190441 | Msa0175290:intron | 55.0% | |
AAACATTCACCTGGTGCCCC+AGG | + | chr1_4:61190443-61190462 | None:intergenic | 55.0% | |
!! | CCAGGTGGAGGCATCATTTG+TGG | + | chr1_4:61190949-61190968 | None:intergenic | 55.0% |
CCACAAATGATGCCTCCACC+TGG | - | chr1_4:61190946-61190965 | Msa0175290:intron | 55.0% | |
TAGCTGACCTGGTATCTGGG+GGG | + | chr1_4:61190974-61190993 | None:intergenic | 55.0% | |
! | CGAATGAAGGTGGCCTTGGT+AGG | + | chr1_4:61191002-61191021 | None:intergenic | 55.0% |
! | CTTCCAGGAACTGTTGGTGG+GGG | + | chr1_4:61191027-61191046 | None:intergenic | 55.0% |
GCTTCCAGGAACTGTTGGTG+GGG | + | chr1_4:61191028-61191047 | None:intergenic | 55.0% | |
GTGCTTCCAGGAACTGTTGG+TGG | + | chr1_4:61191030-61191049 | None:intergenic | 55.0% | |
GTGGTGCTTCCAGGAACTGT+TGG | + | chr1_4:61191033-61191052 | None:intergenic | 55.0% | |
!! | GAGGGAGCACCATTAGAAGG+TGG | + | chr1_4:61191060-61191079 | None:intergenic | 55.0% |
!! | AGATGATGGTGCCGGTGGAT+TGG | + | chr1_4:61191109-61191128 | None:intergenic | 55.0% |
AATCCACCGGCACCATCATC+TGG | - | chr1_4:61191108-61191127 | Msa0175290:intron | 55.0% | |
! | TACCCTCCAGATGATGGTGC+CGG | + | chr1_4:61191117-61191136 | None:intergenic | 55.0% |
GCACCATCATCTGGAGGGTA+TGG | - | chr1_4:61191117-61191136 | Msa0175290:intron | 55.0% | |
GCTCTCAGGTGCTTGAGCAT+TGG | + | chr1_4:61191160-61191179 | None:intergenic | 55.0% | |
! | TATGGGACAGAGTGTCCGGC+TGG | - | chr1_4:61188664-61188683 | Msa0175290:CDS | 60.0% |
GTGGGGAGAGAGTGACTAGG+AGG | - | chr1_4:61189706-61189725 | Msa0175290:intron | 60.0% | |
GAGTGACTAGGAGGGAAGGG+GGG | - | chr1_4:61189715-61189734 | Msa0175290:intron | 60.0% | |
AGTGACTAGGAGGGAAGGGG+GGG | - | chr1_4:61189716-61189735 | Msa0175290:intron | 60.0% | |
! | GCAAGCTGCGGCTTTTCAGC+AGG | - | chr1_4:61190280-61190299 | Msa0175290:intron | 60.0% |
! | GCTGCGGCTTTTCAGCAGGT+TGG | - | chr1_4:61190284-61190303 | Msa0175290:intron | 60.0% |
GGGGTGGCAATACAGGAGGA+AGG | + | chr1_4:61190346-61190365 | None:intergenic | 60.0% | |
GGAATGGGAAATCTCGGGGG+TGG | + | chr1_4:61190362-61190381 | None:intergenic | 60.0% | |
CCCCCGAGATTTCCCATTCC+TGG | - | chr1_4:61190362-61190381 | Msa0175290:intron | 60.0% | |
!! | GGCATTGGTGGTTGACCTCC+AGG | + | chr1_4:61190383-61190402 | None:intergenic | 60.0% |
GGAGGTCAACCACCAATGCC+AGG | - | chr1_4:61190383-61190402 | Msa0175290:intron | 60.0% | |
GGTGCCCCAGGAACAGGTAA+AGG | + | chr1_4:61190431-61190450 | None:intergenic | 60.0% | |
! | TTACCTGTTCCTGGGGCACC+AGG | - | chr1_4:61190431-61190450 | Msa0175290:intron | 60.0% |
! | GGCATGGTGTTAGGTGCGGA+AGG | + | chr1_4:61190928-61190947 | None:intergenic | 60.0% |
GGAGCGAATGAAGGTGGCCT+TGG | + | chr1_4:61191006-61191025 | None:intergenic | 60.0% | |
! | GTTGGTGGGGGAGCGAATGA+AGG | + | chr1_4:61191015-61191034 | None:intergenic | 60.0% |
CACCGGCACCATCATCTGGA+GGG | - | chr1_4:61191112-61191131 | Msa0175290:intron | 60.0% | |
TAGGTGGGACCGGGTGTGGA+AGG | + | chr1_4:61189084-61189103 | None:intergenic | 65.0% | |
CATGTAGGTGGGACCGGGTG+TGG | + | chr1_4:61189088-61189107 | None:intergenic | 65.0% | |
CACACCCGGTCCCACCTACA+TGG | - | chr1_4:61189086-61189105 | Msa0175290:intron | 65.0% | |
TCGGAACCATGGGGCCATGG+TGG | - | chr1_4:61189687-61189706 | Msa0175290:intron | 65.0% | |
CGGAACCATGGGGCCATGGT+GGG | - | chr1_4:61189688-61189707 | Msa0175290:intron | 65.0% | |
GGAACCATGGGGCCATGGTG+GGG | - | chr1_4:61189689-61189708 | Msa0175290:intron | 65.0% | |
GTGACTAGGAGGGAAGGGGG+GGG | - | chr1_4:61189717-61189736 | Msa0175290:intron | 65.0% | |
TGACTAGGAGGGAAGGGGGG+GGG | - | chr1_4:61189718-61189737 | Msa0175290:intron | 65.0% | |
CTCGGGGGTGGCAATACAGG+AGG | + | chr1_4:61190350-61190369 | None:intergenic | 65.0% | |
TCACCTGGTGCCCCAGGAAC+AGG | + | chr1_4:61190437-61190456 | None:intergenic | 65.0% | |
GGTGGGGGAGCGAATGAAGG+TGG | + | chr1_4:61191012-61191031 | None:intergenic | 65.0% | |
GCTCCCCCACCAACAGTTCC+TGG | - | chr1_4:61191021-61191040 | Msa0175290:intron | 65.0% | |
!! | GGTGGTGCTGTGGTGCTTCC+AGG | + | chr1_4:61191042-61191061 | None:intergenic | 65.0% |
! | CCTCCAGATGATGGTGCCGG+TGG | + | chr1_4:61191114-61191133 | None:intergenic | 65.0% |
CCACCGGCACCATCATCTGG+AGG | - | chr1_4:61191111-61191130 | Msa0175290:intron | 65.0% | |
CGGTCGGAACCATGGGGCCA+TGG | - | chr1_4:61189684-61189703 | Msa0175290:intron | 70.0% | |
CTCTCCCCACCATGGCCCCA+TGG | + | chr1_4:61189696-61189715 | None:intergenic | 70.0% | |
GACTAGGAGGGAAGGGGGGG+GGG | - | chr1_4:61189719-61189738 | Msa0175290:intron | 70.0% | |
ACTAGGAGGGAAGGGGGGGG+GGG | - | chr1_4:61189720-61189739 | Msa0175290:intron | 70.0% | |
!! | ATCTGGGGGGCACCAGGTGG+AGG | + | chr1_4:61190961-61190980 | None:intergenic | 70.0% |
!! | GGTATCTGGGGGGCACCAGG+TGG | + | chr1_4:61190964-61190983 | None:intergenic | 70.0% |
!! | CCTGGTATCTGGGGGGCACC+AGG | + | chr1_4:61190967-61190986 | None:intergenic | 70.0% |
CCTGGTGCCCCCCAGATACC+AGG | - | chr1_4:61190964-61190983 | Msa0175290:intron | 70.0% | |
CTAGGAGGGAAGGGGGGGGG+GGG | - | chr1_4:61189721-61189740 | Msa0175290:intron | 75.0% | |
TAGGAGGGAAGGGGGGGGGG+GGG | - | chr1_4:61189722-61189741 | Msa0175290:intron | 75.0% | |
! | AGGAGGGAAGGGGGGGGGGG+GGG | - | chr1_4:61189723-61189742 | Msa0175290:intron | 80.0% |
! | GGGGGGGGGGGGGGGGATTA+TGG | - | chr1_4:61189761-61189780 | Msa0175290:intron | 80.0% |
! | GGAGGGAAGGGGGGGGGGGG+GGG | - | chr1_4:61189724-61189743 | Msa0175290:intron | 85.0% |
! | GAGGGAAGGGGGGGGGGGGG+GGG | - | chr1_4:61189725-61189744 | Msa0175290:intron | 85.0% |
! | AGGGAAGGGGGGGGGGGGGG+GGG | - | chr1_4:61189726-61189745 | Msa0175290:intron | 85.0% |
! | GGGAAGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189727-61189746 | Msa0175290:intron | 90.0% |
! | GGAAGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189728-61189747 | Msa0175290:intron | 90.0% |
! | GAAGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189729-61189748 | Msa0175290:intron | 90.0% |
! | AAGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189730-61189749 | Msa0175290:intron | 90.0% |
! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:61189731-61189750 | Msa0175290:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 61188067 | 61191639 | 61188067 | ID=Msa0175290;Name=Msa0175290 |
chr1_4 | mRNA | 61188067 | 61191639 | 61188067 | ID=Msa0175290-mRNA-1;Parent=Msa0175290;Name=Msa0175290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=197|1|1|1|1|1|5|451|205 |
chr1_4 | exon | 61188067 | 61188786 | 61188067 | ID=Msa0175290-mRNA-1:exon:19556;Parent=Msa0175290-mRNA-1 |
chr1_4 | exon | 61189254 | 61189509 | 61189254 | ID=Msa0175290-mRNA-1:exon:19555;Parent=Msa0175290-mRNA-1 |
chr1_4 | exon | 61189601 | 61189642 | 61189601 | ID=Msa0175290-mRNA-1:exon:19554;Parent=Msa0175290-mRNA-1 |
chr1_4 | exon | 61191301 | 61191343 | 61191301 | ID=Msa0175290-mRNA-1:exon:19553;Parent=Msa0175290-mRNA-1 |
chr1_4 | exon | 61191435 | 61191639 | 61191435 | ID=Msa0175290-mRNA-1:exon:19552;Parent=Msa0175290-mRNA-1 |
chr1_4 | five_prime_UTR | 61191443 | 61191639 | 61191443 | ID=Msa0175290-mRNA-1:five_prime_utr;Parent=Msa0175290-mRNA-1 |
chr1_4 | CDS | 61191435 | 61191442 | 61191435 | ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1 |
chr1_4 | CDS | 61191301 | 61191343 | 61191301 | ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1 |
chr1_4 | CDS | 61189601 | 61189642 | 61189601 | ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1 |
chr1_4 | CDS | 61189254 | 61189509 | 61189254 | ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1 |
chr1_4 | CDS | 61188518 | 61188786 | 61188518 | ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1 |
chr1_4 | three_prime_UTR | 61188067 | 61188517 | 61188067 | ID=Msa0175290-mRNA-1:three_prime_utr;Parent=Msa0175290-mRNA-1 |
Gene Sequence |
Protein sequence |