AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175290 MtrunA17_Chr1g0196141 93.720 207 11 1 1 205 1 207 8.22e-108 308
Msa0175290 MtrunA17_Chr7g0268561 68.317 202 56 3 1 196 1 200 1.86e-68 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175290 AT4G03120.1 63.043 138 30 4 1 137 1 118 2.13e-44 147

Find 108 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTGTTGTTGTTGAATA+AGG 0.184258 1_4:+61191543 None:intergenic
TATTTAGCTGACCTGGTATC+TGG 0.201831 1_4:+61188709 None:intergenic
CCTCGACCTTTACCTGTTCC+TGG 0.225295 1_4:-61189262 Msa0175290:CDS
TTGTTGTGTAAATTATTAAA+TGG 0.248761 1_4:-61188130 Msa0175290:three_prime_UTR
TTAGTTGCGTGTAAATTATT+TGG 0.249582 1_4:-61188089 Msa0175290:three_prime_UTR
GTTAGAAAGCAGCATAATTC+TGG 0.274012 1_4:-61189614 Msa0175290:CDS
TCTGAATATGGCCAAATATA+TGG 0.293240 1_4:+61188218 None:intergenic
ATCGAGAAAGTTCCACAGTT+TGG 0.303587 1_4:-61191617 Msa0175290:five_prime_UTR
CCGTTGATCAATTAAACTTT+GGG 0.329708 1_4:+61189444 None:intergenic
TTCTAATGGTGCTCCCTCTA+TGG 0.335322 1_4:-61188622 Msa0175290:CDS
ACTCGCACAAGCCATATATT+TGG 0.335520 1_4:-61188229 Msa0175290:three_prime_UTR
GTACATGGTCTCTCTGAATA+TGG 0.340917 1_4:+61188206 None:intergenic
TCCGTTGATCAATTAAACTT+TGG 0.357282 1_4:+61189443 None:intergenic
TCGAGAAAGTTCCACAGTTT+GGG 0.362917 1_4:-61191616 Msa0175290:five_prime_UTR
GGTGGTGCTGTGGTGCTTCC+AGG 0.370818 1_4:+61188645 None:intergenic
GGCATTGGTGGTTGACCTCC+AGG 0.381491 1_4:+61189304 None:intergenic
AATCCACCGGCACCATCATC+TGG 0.382484 1_4:-61188576 Msa0175290:CDS
ATTTAGCTGACCTGGTATCT+GGG 0.382496 1_4:+61188710 None:intergenic
GAAGAAAACAGGCTATTTGC+AGG 0.396518 1_4:-61188402 Msa0175290:three_prime_UTR
CTCGACCTTTACCTGTTCCT+GGG 0.409983 1_4:-61189261 Msa0175290:CDS
GGCAATACAGGAGGAAGGTT+TGG 0.410837 1_4:+61189346 None:intergenic
TTGAGCATTGGAATTGGAAT+TGG 0.414958 1_4:+61188539 None:intergenic
TCACCTGGTGCCCCAGGAAC+AGG 0.415915 1_4:+61189250 None:intergenic
TCTCATTTGTTTACTGAATG+AGG 0.420396 1_4:-61188252 Msa0175290:three_prime_UTR
ATCATTTGTGGCATGGTGTT+AGG 0.420752 1_4:+61188750 None:intergenic
AGGTGCTTGAGCATTGGAAT+TGG 0.425185 1_4:+61188533 None:intergenic
TTCTAATAATTTAAAGTACA+TGG 0.431090 1_4:+61188191 None:intergenic
GGAGCGAATGAAGGTGGCCT+TGG 0.436210 1_4:+61188681 None:intergenic
TGCTTCCAGGAACTGTTGGT+GGG 0.436884 1_4:+61188658 None:intergenic
TGTGGGTTATAATAATCTAA+TGG 0.444341 1_4:-61189377 Msa0175290:CDS
GTGCTTCCAGGAACTGTTGG+TGG 0.445166 1_4:+61188657 None:intergenic
TGTGCTTTCAGGCTAATGTA+AGG 0.448575 1_4:-61189498 Msa0175290:intron
CAACGGATCAAAGAACATCT+TGG 0.452716 1_4:-61189427 Msa0175290:CDS
CCAGGTCATTGATTGCTCTC+AGG 0.456760 1_4:+61188513 None:intergenic
CTTCCAGGAACTGTTGGTGG+GGG 0.460489 1_4:+61188660 None:intergenic
GTGGTGCTTCCAGGAACTGT+TGG 0.469297 1_4:+61188654 None:intergenic
CGGTGGATTGGCTTGATACA+TGG 0.471791 1_4:+61188590 None:intergenic
CGAATGAAGGTGGCCTTGGT+AGG 0.473183 1_4:+61188685 None:intergenic
AACGGATCAAAGAACATCTT+GGG 0.474763 1_4:-61189426 Msa0175290:CDS
ATAGAGGGAGCACCATTAGA+AGG 0.475238 1_4:+61188624 None:intergenic
ACCACAGCACCACCTTCTAA+TGG 0.475930 1_4:-61188636 Msa0175290:CDS
CCGTAGCTCAGGAAGAAAAC+AGG 0.479414 1_4:-61188413 Msa0175290:three_prime_UTR
CCAGGTGGAGGCATCATTTG+TGG 0.479641 1_4:+61188738 None:intergenic
GGTGGTTGACCTCCAGGAAT+GGG 0.482419 1_4:+61189310 None:intergenic
CTCCAGGAATGGGAAATCTC+GGG 0.485227 1_4:+61189320 None:intergenic
TTACCTGTTCCTGGGGCACC+AGG 0.487603 1_4:-61189253 Msa0175290:intron
TTCTTCAAATTGCTGATAGT+AGG 0.492796 1_4:+61189474 None:intergenic
GCTCTCAGGTGCTTGAGCAT+TGG 0.493534 1_4:+61188527 None:intergenic
AGATGATGGTGCCGGTGGAT+TGG 0.502122 1_4:+61188578 None:intergenic
GGCATGAGAGGTCTGAATCC+TGG 0.508100 1_4:+61189283 None:intergenic
TGGTGGTTGACCTCCAGGAA+TGG 0.511144 1_4:+61189309 None:intergenic
ACAGGCTATTTGCAGGGACT+CGG 0.513648 1_4:-61188395 Msa0175290:three_prime_UTR
CATGGCTGATGATGCCATAG+AGG 0.518907 1_4:+61188608 None:intergenic
CCTCCAGGAATGGGAAATCT+CGG 0.519818 1_4:+61189319 None:intergenic
TTTAGCTGACCTGGTATCTG+GGG 0.521283 1_4:+61188711 None:intergenic
GCACCATCATCTGGAGGGTA+TGG 0.522073 1_4:-61188567 Msa0175290:CDS
TGATGAAAGGAGGTTGATGC+AGG 0.524369 1_4:+61191576 None:intergenic
TTATGCTGCTTTCTAACAGA+TGG 0.527012 1_4:+61189620 None:intergenic
GCTTCCAGGAACTGTTGGTG+GGG 0.536029 1_4:+61188659 None:intergenic
GGAGGTCAACCACCAATGCC+AGG 0.536193 1_4:-61189301 Msa0175290:CDS
AAACATTCACCTGGTGCCCC+AGG 0.539144 1_4:+61189244 None:intergenic
CCCAAAGTTTAATTGATCAA+CGG 0.547338 1_4:-61189444 Msa0175290:CDS
GGTGCCCCAGGAACAGGTAA+AGG 0.553270 1_4:+61189256 None:intergenic
TTACCATACCCTCCAGATGA+TGG 0.555923 1_4:+61188564 None:intergenic
GGTAGGGTATTTAGCTGACC+TGG 0.559827 1_4:+61188702 None:intergenic
GGTCTGAATCCTGGCATTGG+TGG 0.562709 1_4:+61189292 None:intergenic
TTAGCTGACCTGGTATCTGG+GGG 0.565149 1_4:+61188712 None:intergenic
GCGTGTAAATTATTTGGCAT+AGG 0.568882 1_4:-61188083 Msa0175290:three_prime_UTR
CCAGGAACAGGTAAAGGTCG+AGG 0.570796 1_4:+61189262 None:intergenic
CCTCCAGATGATGGTGCCGG+TGG 0.578973 1_4:+61188573 None:intergenic
TACCCTCCAGATGATGGTGC+CGG 0.589060 1_4:+61188570 None:intergenic
CACAAGTTAGAAGAAGATGA+AGG 0.589879 1_4:+61191494 None:intergenic
GAATGAAGGTGGCCTTGGTA+GGG 0.590337 1_4:+61188686 None:intergenic
AGGAACTGATCACTGATGAA+AGG 0.592541 1_4:+61191563 None:intergenic
GCACTCAAACAGCCATGCCT+CGG 0.592680 1_4:-61191434 Msa0175290:intron
CCTGAGAGCAATCAATGACC+TGG 0.596965 1_4:-61188513 Msa0175290:exon
TGGAGGCATCATTTGTGGCA+TGG 0.600454 1_4:+61188743 None:intergenic
CCACAAATGATGCCTCCACC+TGG 0.601830 1_4:-61188738 Msa0175290:CDS
GGAAGCAACTTACAGAATCG+TGG 0.602897 1_4:+61191288 None:intergenic
CAACAACAACAATAAGCTGA+AGG 0.608857 1_4:-61191536 Msa0175290:five_prime_UTR
AGAGGTCTGAATCCTGGCAT+TGG 0.609422 1_4:+61189289 None:intergenic
GAAGCAACTTACAGAATCGT+GGG 0.610854 1_4:+61191289 None:intergenic
TGAGTTGCAGTACCGAGGCA+TGG 0.613245 1_4:+61191422 None:intergenic
TCCAGGAATGGGAAATCTCG+GGG 0.614934 1_4:+61189321 None:intergenic
GAAGAAGATGAAGGATGATG+AGG 0.619278 1_4:+61191503 None:intergenic
ATGGCTGATGATGCCATAGA+GGG 0.623817 1_4:+61188609 None:intergenic
ACCATTAGAAGGTGGTGCTG+TGG 0.626785 1_4:+61188635 None:intergenic
AAGAAAACAGGCTATTTGCA+GGG 0.627036 1_4:-61188401 Msa0175290:three_prime_UTR
CCACCGGCACCATCATCTGG+AGG 0.638593 1_4:-61188573 Msa0175290:CDS
AATTTCATACAAGTTTGACC+AGG 0.641105 1_4:+61188495 None:intergenic
TCGACCTTTACCTGTTCCTG+GGG 0.642630 1_4:-61189260 Msa0175290:CDS
CATGTATCAAGCCAATCCAC+CGG 0.647787 1_4:-61188589 Msa0175290:CDS
TTGTGGCATGGTGTTAGGTG+CGG 0.648556 1_4:+61188755 None:intergenic
CACCGGCACCATCATCTGGA+GGG 0.651394 1_4:-61188572 Msa0175290:CDS
GGGGTGGCAATACAGGAGGA+AGG 0.651955 1_4:+61189341 None:intergenic
AACTGATCACTGATGAAAGG+AGG 0.654016 1_4:+61191566 None:intergenic
GGCATGGTGTTAGGTGCGGA+AGG 0.654135 1_4:+61188759 None:intergenic
GGTAAAGGTCGAGGCATGAG+AGG 0.654248 1_4:+61189271 None:intergenic
TCATTCAGTAAACAAATGAG+AGG 0.660707 1_4:+61188254 None:intergenic
ATGCGTCTATGCCCAAACTG+TGG 0.663756 1_4:+61191605 None:intergenic
CCGAGATTTCCCATTCCTGG+AGG 0.676581 1_4:-61189319 Msa0175290:CDS
GAGGGAGCACCATTAGAAGG+TGG 0.677405 1_4:+61188627 None:intergenic
TAGCTGACCTGGTATCTGGG+GGG 0.680021 1_4:+61188713 None:intergenic
GTCAGCTAAATACCCTACCA+AGG 0.684554 1_4:-61188698 Msa0175290:CDS
CCAGGAATGGGAAATCTCGG+GGG 0.691329 1_4:+61189322 None:intergenic
AGAACATCTTGGGCAAGCTG+CGG 0.693174 1_4:-61189416 Msa0175290:CDS
TAATTCTGGTTATAAACACA+AGG 0.696885 1_4:-61189600 Msa0175290:intron
ATGGAAAATAGTATCGAACA+AGG 0.711480 1_4:+61188436 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATCAAAATCAAAAT+TGG - chr1_4:61189466-61189485 Msa0175290:CDS 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189732-61189751 Msa0175290:intron 100.0%
!!! ATATCACATAAAACATTTTA+AGG + chr1_4:61188582-61188601 None:intergenic 15.0%
!!! ATCTTGAAAGTATAATTTAA+TGG + chr1_4:61190558-61190577 None:intergenic 15.0%
!! ATATGATAGAATAAATTATC+CGG + chr1_4:61190867-61190886 None:intergenic 15.0%
!!! TTCTAATAATTTAAAGTACA+TGG + chr1_4:61191496-61191515 None:intergenic 15.0%
!! TTGTTGTGTAAATTATTAAA+TGG - chr1_4:61191554-61191573 Msa0175290:five_prime_UTR 15.0%
!! AAATGTTATGAAATGAATGA+AGG + chr1_4:61188313-61188332 None:intergenic 20.0%
!! TGCTTAATTTACTTTAATGT+TGG + chr1_4:61188696-61188715 None:intergenic 20.0%
!! AGAAAAGATTATGGAAAAAT+AGG - chr1_4:61188809-61188828 Msa0175290:intron 20.0%
!! TAATGAGTTAGATTGAAATA+TGG - chr1_4:61188975-61188994 Msa0175290:intron 20.0%
!!! AAATTTTGAACACAACAAAA+CGG + chr1_4:61189260-61189279 None:intergenic 20.0%
!!! AAATTTTGAACACAACAAAA+CGG + chr1_4:61189260-61189279 None:intergenic 20.0%
!! AATGAAAGTTGAAATTAGAA+AGG - chr1_4:61189539-61189558 Msa0175290:intron 20.0%
!! ATGAAAGTTGAAATTAGAAA+GGG - chr1_4:61189540-61189559 Msa0175290:intron 20.0%
!! TACGTATAATATCCATTAAA+CGG - chr1_4:61189664-61189683 Msa0175290:intron 20.0%
!!! ATAAAAGTGTATTTCAATCT+AGG - chr1_4:61190136-61190155 Msa0175290:intron 20.0%
!! AACATGATATTCAAACTAAA+AGG + chr1_4:61190649-61190668 None:intergenic 20.0%
!! TCTATCATATCTAATATAAG+TGG - chr1_4:61190877-61190896 Msa0175290:intron 20.0%
!!! TAATATAAGTGGTTTTCAAT+TGG - chr1_4:61190888-61190907 Msa0175290:intron 20.0%
!! CTTATTGTTGTTGTTGAATA+AGG + chr1_4:61188144-61188163 None:intergenic 25.0%
! ATGTTGAAATCAAAGTGAAA+GGG + chr1_4:61188444-61188463 None:intergenic 25.0%
! TATGTTGAAATCAAAGTGAA+AGG + chr1_4:61188445-61188464 None:intergenic 25.0%
!! TCCATAATCTTTTCTACTAT+GGG + chr1_4:61188804-61188823 None:intergenic 25.0%
!! TTCCATAATCTTTTCTACTA+TGG + chr1_4:61188805-61188824 None:intergenic 25.0%
! ACCCTTTCAAATAATAAAGT+TGG - chr1_4:61189288-61189307 Msa0175290:CDS 25.0%
! GCCAACTTTATTATTTGAAA+GGG + chr1_4:61189292-61189311 None:intergenic 25.0%
! TTCACATCAATGAATTCATA+CGG + chr1_4:61189328-61189347 None:intergenic 25.0%
! ACCCTTTCAAATAATAAAGT+TGG - chr1_4:61189288-61189307 Msa0175290:CDS 25.0%
! GCCAACTTTATTATTTGAAA+GGG + chr1_4:61189292-61189311 None:intergenic 25.0%
! TTCACATCAATGAATTCATA+CGG + chr1_4:61189328-61189347 None:intergenic 25.0%
! CTAATTTCAACTTTCATTTC+TGG + chr1_4:61189537-61189556 None:intergenic 25.0%
! TATAATATCCATTAAACGGT+CGG - chr1_4:61189668-61189687 Msa0175290:intron 25.0%
!! AGAAATTAATCTTTTGTTGC+TGG + chr1_4:61189916-61189935 None:intergenic 25.0%
! TCTTCAGAAACAATAAGAAA+GGG + chr1_4:61189947-61189966 None:intergenic 25.0%
! TTCTTCAGAAACAATAAGAA+AGG + chr1_4:61189948-61189967 None:intergenic 25.0%
!! TAATTCTGGTTATAAACACA+AGG - chr1_4:61190084-61190103 Msa0175290:intron 25.0%
!! TGTGGGTTATAATAATCTAA+TGG - chr1_4:61190307-61190326 Msa0175290:intron 25.0%
! CAGTCAAATACTTCAATAAT+AGG + chr1_4:61190507-61190526 None:intergenic 25.0%
! AATGAAAGCCAAAAATAATG+TGG + chr1_4:61190616-61190635 None:intergenic 25.0%
! AAAGGTTACATGTAAAGAAT+AGG + chr1_4:61190718-61190737 None:intergenic 25.0%
!!! TATGTTTTGGTTTGGTTTTT+TGG - chr1_4:61190754-61190773 Msa0175290:intron 25.0%
!! TATGTTCGATTTTTATGACT+AGG - chr1_4:61191392-61191411 Msa0175290:intron 25.0%
! TTAGTTGCGTGTAAATTATT+TGG - chr1_4:61191595-61191614 Msa0175290:five_prime_UTR 25.0%
AATGAAGGTTTGTGTGATTT+AGG + chr1_4:61188298-61188317 None:intergenic 30.0%
ATTACTTGTCTTGCAATTGT+TGG + chr1_4:61188640-61188659 None:intergenic 30.0%
CAAGACAAGTAATGTTGTAT+GGG - chr1_4:61188647-61188666 Msa0175290:CDS 30.0%
AAAAACATTAGAGACAGAGT+TGG - chr1_4:61188772-61188791 Msa0175290:intron 30.0%
AAAACATTAGAGACAGAGTT+GGG - chr1_4:61188773-61188792 Msa0175290:intron 30.0%
! ATAATCTTTTCTACTATGGG+TGG + chr1_4:61188801-61188820 None:intergenic 30.0%
ACCCATAGTAGAAAAGATTA+TGG - chr1_4:61188800-61188819 Msa0175290:intron 30.0%
TATGGAAAAATAGGTTTACG+TGG - chr1_4:61188818-61188837 Msa0175290:intron 30.0%
AAAAATAGGTTTACGTGGTT+TGG - chr1_4:61188823-61188842 Msa0175290:intron 30.0%
AAAATAGGTTTACGTGGTTT+GGG - chr1_4:61188824-61188843 Msa0175290:intron 30.0%
! GACTTGTAGATTTTGTAGTA+AGG - chr1_4:61188860-61188879 Msa0175290:intron 30.0%
GGCCAACTTTATTATTTGAA+AGG + chr1_4:61189293-61189312 None:intergenic 30.0%
CAAATAATAAAGTTGGCCAA+TGG - chr1_4:61189295-61189314 Msa0175290:CDS 30.0%
GGCCAACTTTATTATTTGAA+AGG + chr1_4:61189293-61189312 None:intergenic 30.0%
CAAATAATAAAGTTGGCCAA+TGG - chr1_4:61189295-61189314 Msa0175290:CDS 30.0%
AAATCAAAATTGGAAGACTC+TGG - chr1_4:61189476-61189495 Msa0175290:CDS 30.0%
AAGAACAAACAGAAGTTAGA+CGG - chr1_4:61189590-61189609 Msa0175290:intron 30.0%
TATCGAAAATGTTTATCCTC+AGG + chr1_4:61189646-61189665 None:intergenic 30.0%
CAATCTAGGTCATATTTATG+AGG - chr1_4:61190150-61190169 Msa0175290:intron 30.0%
TGATATGTATTTGTGCTTTC+AGG - chr1_4:61190175-61190194 Msa0175290:intron 30.0%
TTCTTCAAATTGCTGATAGT+AGG + chr1_4:61190213-61190232 None:intergenic 30.0%
CCGTTGATCAATTAAACTTT+GGG + chr1_4:61190243-61190262 None:intergenic 30.0%
CCCAAAGTTTAATTGATCAA+CGG - chr1_4:61190240-61190259 Msa0175290:intron 30.0%
TCCGTTGATCAATTAAACTT+TGG + chr1_4:61190244-61190263 None:intergenic 30.0%
CATGATTATGCACATCTTAA+TGG - chr1_4:61190586-61190605 Msa0175290:intron 30.0%
! ATGGCTAACCACATTATTTT+TGG - chr1_4:61190605-61190624 Msa0175290:intron 30.0%
! CTATATGTTACTTGTGTCTT+TGG - chr1_4:61190669-61190688 Msa0175290:intron 30.0%
! GTTTTCAATTGGAGTTTTCA+GGG - chr1_4:61190899-61190918 Msa0175290:intron 30.0%
AATTTCATACAAGTTTGACC+AGG + chr1_4:61191192-61191211 None:intergenic 30.0%
! ATGGAAAATAGTATCGAACA+AGG + chr1_4:61191251-61191270 None:intergenic 30.0%
TCATTCAGTAAACAAATGAG+AGG + chr1_4:61191433-61191452 None:intergenic 30.0%
TCTCATTTGTTTACTGAATG+AGG - chr1_4:61191432-61191451 Msa0175290:intron 30.0%
TCTGAATATGGCCAAATATA+TGG + chr1_4:61191469-61191488 None:intergenic 30.0%
CAACAACAACAATAAGCTGA+AGG - chr1_4:61188148-61188167 Msa0175290:three_prime_UTR 35.0%
CACAAGTTAGAAGAAGATGA+AGG + chr1_4:61188193-61188212 None:intergenic 35.0%
!! TTTGATTTTGCCCCATAACT+AGG - chr1_4:61188217-61188236 Msa0175290:three_prime_UTR 35.0%
! TTGATTTTGCCCCATAACTA+GGG - chr1_4:61188218-61188237 Msa0175290:three_prime_UTR 35.0%
AGCAAAAAACCCTAGTTATG+GGG + chr1_4:61188230-61188249 None:intergenic 35.0%
CAGCAAAAAACCCTAGTTAT+GGG + chr1_4:61188231-61188250 None:intergenic 35.0%
TTTGTGTGATTTAGGCTTGA+AGG + chr1_4:61188290-61188309 None:intergenic 35.0%
! TTTCTTCGATTTTGCTTTGC+AGG - chr1_4:61188341-61188360 Msa0175290:three_prime_UTR 35.0%
ACATAATTAGCGATTGGTGA+GGG + chr1_4:61188420-61188439 None:intergenic 35.0%
AACATAATTAGCGATTGGTG+AGG + chr1_4:61188421-61188440 None:intergenic 35.0%
AAGGGAACATAATTAGCGAT+TGG + chr1_4:61188426-61188445 None:intergenic 35.0%
ATGTGCACAACTACATTATG+TGG - chr1_4:61188479-61188498 Msa0175290:three_prime_UTR 35.0%
GCAAGACAAGTAATGTTGTA+TGG - chr1_4:61188646-61188665 Msa0175290:CDS 35.0%
TAAATTAAGCAGCAGAGATG+AGG - chr1_4:61188705-61188724 Msa0175290:CDS 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - chr1_4:61188876-61188895 Msa0175290:intron 35.0%
CAATGAATTCATACGGTAGA+TGG + chr1_4:61189321-61189340 None:intergenic 35.0%
CAATGAATTCATACGGTAGA+TGG + chr1_4:61189321-61189340 None:intergenic 35.0%
GGGATTATGATTCTTGCTTA+TGG - chr1_4:61189560-61189579 Msa0175290:intron 35.0%
TCCAAAACCCTTAATTCCAA+TGG - chr1_4:61189807-61189826 Msa0175290:intron 35.0%
! ACCATTGGAATTAAGGGTTT+TGG + chr1_4:61189811-61189830 None:intergenic 35.0%
AAACCCTTAATTCCAATGGT+AGG - chr1_4:61189811-61189830 Msa0175290:intron 35.0%
AACCCTTAATTCCAATGGTA+GGG - chr1_4:61189812-61189831 Msa0175290:intron 35.0%
TTCCCTACCATTGGAATTAA+GGG + chr1_4:61189817-61189836 None:intergenic 35.0%
TTTCCCTACCATTGGAATTA+AGG + chr1_4:61189818-61189837 None:intergenic 35.0%
CTAACATGCACTAGTTGTTT+AGG + chr1_4:61189860-61189879 None:intergenic 35.0%
!! TTATGCTGCTTTCTAACAGA+TGG + chr1_4:61190067-61190086 None:intergenic 35.0%
GTTAGAAAGCAGCATAATTC+TGG - chr1_4:61190070-61190089 Msa0175290:intron 35.0%
AACGGATCAAAGAACATCTT+GGG - chr1_4:61190258-61190277 Msa0175290:intron 35.0%
TACAAGCGCAACTAAAAGAA+AGG + chr1_4:61190736-61190755 None:intergenic 35.0%
! TTAGTTGCGCTTGTATGTTT+TGG - chr1_4:61190741-61190760 Msa0175290:intron 35.0%
CGGTTTATAATGCTTGAACT+GGG + chr1_4:61190847-61190866 None:intergenic 35.0%
CCAGTTCAAGCATTATAAAC+CGG - chr1_4:61190845-61190864 Msa0175290:intron 35.0%
! GGTTTTCAATTGGAGTTTTC+AGG - chr1_4:61190898-61190917 Msa0175290:intron 35.0%
!! TTGAGCATTGGAATTGGAAT+TGG + chr1_4:61191148-61191167 None:intergenic 35.0%
AAGAAAACAGGCTATTTGCA+GGG - chr1_4:61191283-61191302 Msa0175290:intron 35.0%
GCGTGTAAATTATTTGGCAT+AGG - chr1_4:61191601-61191620 Msa0175290:five_prime_UTR 35.0%
ATCGAGAAAGTTCCACAGTT+TGG - chr1_4:61188067-61188086 Msa0175290:three_prime_UTR 40.0%
TCGAGAAAGTTCCACAGTTT+GGG - chr1_4:61188068-61188087 Msa0175290:three_prime_UTR 40.0%
AACTGATCACTGATGAAAGG+AGG + chr1_4:61188121-61188140 None:intergenic 40.0%
AGGAACTGATCACTGATGAA+AGG + chr1_4:61188124-61188143 None:intergenic 40.0%
GAAGAAGATGAAGGATGATG+AGG + chr1_4:61188184-61188203 None:intergenic 40.0%
GCAGCAAAAAACCCTAGTTA+TGG + chr1_4:61188232-61188251 None:intergenic 40.0%
GAAGCAACTTACAGAATCGT+GGG + chr1_4:61188398-61188417 None:intergenic 40.0%
CTTACAGTGTTTCCAAACGA+CGG - chr1_4:61188552-61188571 Msa0175290:CDS 40.0%
! AAAGTACTCGCTGAAGTTGA+AGG - chr1_4:61188603-61188622 Msa0175290:CDS 40.0%
AAGTACTCGCTGAAGTTGAA+GGG - chr1_4:61188604-61188623 Msa0175290:CDS 40.0%
!! TAATGTTGGTTCTTTCCAGC+CGG + chr1_4:61188682-61188701 None:intergenic 40.0%
AAGGAGAGTAGATTAGATGG+AGG - chr1_4:61188879-61188898 Msa0175290:intron 40.0%
GAGGATAGTCACATTACTAG+AGG - chr1_4:61188898-61188917 Msa0175290:intron 40.0%
ACATTACTAGAGGCAGAGAA+AGG - chr1_4:61188908-61188927 Msa0175290:intron 40.0%
! AAGCCTTATACCACTACATG+GGG + chr1_4:61189044-61189063 None:intergenic 40.0%
! CAAGCCTTATACCACTACAT+GGG + chr1_4:61189045-61189064 None:intergenic 40.0%
! TCAAGCCTTATACCACTACA+TGG + chr1_4:61189046-61189065 None:intergenic 40.0%
!! TTTTTGTTTCCTTCCACACC+CGG - chr1_4:61189072-61189091 Msa0175290:intron 40.0%
CAGAAGATAACCATGTAGGT+GGG + chr1_4:61189099-61189118 None:intergenic 40.0%
ACAGAAGATAACCATGTAGG+TGG + chr1_4:61189100-61189119 None:intergenic 40.0%
ACCTACATGGTTATCTTCTG+TGG - chr1_4:61189099-61189118 Msa0175290:intron 40.0%
ACCACAGAAGATAACCATGT+AGG + chr1_4:61189103-61189122 None:intergenic 40.0%
! CTTCTGTGGTAGCTAGTTTA+AGG - chr1_4:61189113-61189132 Msa0175290:intron 40.0%
CGGTGAAATGATGTTCTCTT+GGG + chr1_4:61189240-61189259 None:intergenic 40.0%
ACGGTGAAATGATGTTCTCT+TGG + chr1_4:61189241-61189260 None:intergenic 40.0%
CGGTGAAATGATGTTCTCTT+GGG + chr1_4:61189240-61189259 None:intergenic 40.0%
ACGGTGAAATGATGTTCTCT+TGG + chr1_4:61189241-61189260 None:intergenic 40.0%
!!! TTTTGTGTTTCTGAAGCCTG+AGG - chr1_4:61189627-61189646 Msa0175290:intron 40.0%
ACATGCACTAGTTGTTTAGG+TGG + chr1_4:61189857-61189876 None:intergenic 40.0%
CATATGCAAGTGTCTAGTTG+TGG + chr1_4:61190018-61190037 None:intergenic 40.0%
TGTGCTTTCAGGCTAATGTA+AGG - chr1_4:61190186-61190205 Msa0175290:intron 40.0%
CAACGGATCAAAGAACATCT+TGG - chr1_4:61190257-61190276 Msa0175290:intron 40.0%
TATAAAAGCCGCGAAAGATG+TGG + chr1_4:61190472-61190491 None:intergenic 40.0%
!!! TGCGCTTGTATGTTTTGGTT+TGG - chr1_4:61190746-61190765 Msa0175290:intron 40.0%
! CTTTCTTGTGTCGAGAGTTT+TGG - chr1_4:61190809-61190828 Msa0175290:intron 40.0%
!!! TGTCGAGAGTTTTGGAGAAT+CGG - chr1_4:61190817-61190836 Msa0175290:intron 40.0%
CCGGTTTATAATGCTTGAAC+TGG + chr1_4:61190848-61190867 None:intergenic 40.0%
ATCATTTGTGGCATGGTGTT+AGG + chr1_4:61190937-61190956 None:intergenic 40.0%
ATTTAGCTGACCTGGTATCT+GGG + chr1_4:61190977-61190996 None:intergenic 40.0%
TATTTAGCTGACCTGGTATC+TGG + chr1_4:61190978-61190997 None:intergenic 40.0%
GAAGAAAACAGGCTATTTGC+AGG - chr1_4:61191282-61191301 Msa0175290:intron 40.0%
ACTCGCACAAGCCATATATT+TGG - chr1_4:61191455-61191474 Msa0175290:five_prime_UTR 40.0%
GTACATGGTCTCTCTGAATA+TGG + chr1_4:61191481-61191500 None:intergenic 40.0%
!! TGATGAAAGGAGGTTGATGC+AGG + chr1_4:61188111-61188130 None:intergenic 45.0%
GGAAGCAACTTACAGAATCG+TGG + chr1_4:61188399-61188418 None:intergenic 45.0%
!!! TTTTAAGGCCTTCCGTCGTT+TGG + chr1_4:61188567-61188586 None:intergenic 45.0%
TACTAGAGGCAGAGAAAGGA+AGG - chr1_4:61188912-61188931 Msa0175290:intron 45.0%
TTCATACGGTAGATGGCCAT+TGG + chr1_4:61189314-61189333 None:intergenic 45.0%
TTCATACGGTAGATGGCCAT+TGG + chr1_4:61189314-61189333 None:intergenic 45.0%
CATTAAACGGTCGGAACCAT+GGG - chr1_4:61189677-61189696 Msa0175290:intron 45.0%
ATTAAACGGTCGGAACCATG+GGG - chr1_4:61189678-61189697 Msa0175290:intron 45.0%
TGGATGGGAAAACATTCACC+TGG + chr1_4:61190452-61190471 None:intergenic 45.0%
TTTCCCATCCACATCTTTCG+CGG - chr1_4:61190461-61190480 Msa0175290:intron 45.0%
!!! GTCGAGAGTTTTGGAGAATC+GGG - chr1_4:61190818-61190837 Msa0175290:intron 45.0%
TTTAGCTGACCTGGTATCTG+GGG + chr1_4:61190976-61190995 None:intergenic 45.0%
GTCAGCTAAATACCCTACCA+AGG - chr1_4:61190986-61191005 Msa0175290:intron 45.0%
!! ATAGAGGGAGCACCATTAGA+AGG + chr1_4:61191063-61191082 None:intergenic 45.0%
TTCTAATGGTGCTCCCTCTA+TGG - chr1_4:61191062-61191081 Msa0175290:intron 45.0%
! ATGGCTGATGATGCCATAGA+GGG + chr1_4:61191078-61191097 None:intergenic 45.0%
CATGTATCAAGCCAATCCAC+CGG - chr1_4:61191095-61191114 Msa0175290:intron 45.0%
TTACCATACCCTCCAGATGA+TGG + chr1_4:61191123-61191142 None:intergenic 45.0%
!! AGGTGCTTGAGCATTGGAAT+TGG + chr1_4:61191154-61191173 None:intergenic 45.0%
! CTATTTTCCATCCGTAGCTC+AGG - chr1_4:61191260-61191279 Msa0175290:intron 45.0%
! TTTTCTTCCTGAGCTACGGA+TGG + chr1_4:61191270-61191289 None:intergenic 45.0%
! CCTGTTTTCTTCCTGAGCTA+CGG + chr1_4:61191274-61191293 None:intergenic 45.0%
ATGCGTCTATGCCCAAACTG+TGG + chr1_4:61188082-61188101 None:intergenic 50.0%
CAGTGTTTCCAAACGACGGA+AGG - chr1_4:61188556-61188575 Msa0175290:CDS 50.0%
! GTTGTATGGGACAGAGTGTC+CGG - chr1_4:61188660-61188679 Msa0175290:CDS 50.0%
CAGAGATGAGGTTGTTGCGT+TGG - chr1_4:61188717-61188736 Msa0175290:CDS 50.0%
AGGTTGTTGCGTTGGATGTG+TGG - chr1_4:61188725-61188744 Msa0175290:CDS 50.0%
GGTTGTTGCGTTGGATGTGT+GGG - chr1_4:61188726-61188745 Msa0175290:CDS 50.0%
ACTACATGGGGTCGACTACA+TGG + chr1_4:61189032-61189051 None:intergenic 50.0%
ATGTAGTCGACCCCATGTAG+TGG - chr1_4:61189031-61189050 Msa0175290:intron 50.0%
CGACCCCATGTAGTGGTATA+AGG - chr1_4:61189038-61189057 Msa0175290:intron 50.0%
ATAACCATGTAGGTGGGACC+GGG + chr1_4:61189093-61189112 None:intergenic 50.0%
GATAACCATGTAGGTGGGAC+CGG + chr1_4:61189094-61189113 None:intergenic 50.0%
CCATGGTTCCGACCGTTTAA+TGG + chr1_4:61189679-61189698 None:intergenic 50.0%
CCATTAAACGGTCGGAACCA+TGG - chr1_4:61189676-61189695 Msa0175290:intron 50.0%
AGAGAGTGACTAGGAGGGAA+GGG - chr1_4:61189712-61189731 Msa0175290:intron 50.0%
! GGGGGGGATTATGGTGTTTT+GGG - chr1_4:61189770-61189789 Msa0175290:intron 50.0%
GCACAGCATTTCCCTACCAT+TGG + chr1_4:61189826-61189845 None:intergenic 50.0%
AGAACATCTTGGGCAAGCTG+CGG - chr1_4:61190268-61190287 Msa0175290:intron 50.0%
!!! GCTTTTCAGCAGGTTGGTGT+GGG - chr1_4:61190290-61190309 Msa0175290:intron 50.0%
GGCAATACAGGAGGAAGGTT+TGG + chr1_4:61190341-61190360 None:intergenic 50.0%
TCCAGGAATGGGAAATCTCG+GGG + chr1_4:61190366-61190385 None:intergenic 50.0%
CTCCAGGAATGGGAAATCTC+GGG + chr1_4:61190367-61190386 None:intergenic 50.0%
CCTCCAGGAATGGGAAATCT+CGG + chr1_4:61190368-61190387 None:intergenic 50.0%
AGAGGTCTGAATCCTGGCAT+TGG + chr1_4:61190398-61190417 None:intergenic 50.0%
CTCGACCTTTACCTGTTCCT+GGG - chr1_4:61190423-61190442 Msa0175290:intron 50.0%
TCGACCTTTACCTGTTCCTG+GGG - chr1_4:61190424-61190443 Msa0175290:intron 50.0%
AAGCCGCGAAAGATGTGGAT+GGG + chr1_4:61190467-61190486 None:intergenic 50.0%
AAAGCCGCGAAAGATGTGGA+TGG + chr1_4:61190468-61190487 None:intergenic 50.0%
! TTGTGGCATGGTGTTAGGTG+CGG + chr1_4:61190932-61190951 None:intergenic 50.0%
!! TGGAGGCATCATTTGTGGCA+TGG + chr1_4:61190944-61190963 None:intergenic 50.0%
TTAGCTGACCTGGTATCTGG+GGG + chr1_4:61190975-61190994 None:intergenic 50.0%
! GGTAGGGTATTTAGCTGACC+TGG + chr1_4:61190985-61191004 None:intergenic 50.0%
! GAATGAAGGTGGCCTTGGTA+GGG + chr1_4:61191001-61191020 None:intergenic 50.0%
TGCTTCCAGGAACTGTTGGT+GGG + chr1_4:61191029-61191048 None:intergenic 50.0%
ACCACAGCACCACCTTCTAA+TGG - chr1_4:61191048-61191067 Msa0175290:intron 50.0%
! ACCATTAGAAGGTGGTGCTG+TGG + chr1_4:61191052-61191071 None:intergenic 50.0%
! CATGGCTGATGATGCCATAG+AGG + chr1_4:61191079-61191098 None:intergenic 50.0%
!! CGGTGGATTGGCTTGATACA+TGG + chr1_4:61191097-61191116 None:intergenic 50.0%
! CCAGGTCATTGATTGCTCTC+AGG + chr1_4:61191174-61191193 None:intergenic 50.0%
CCTGAGAGCAATCAATGACC+TGG - chr1_4:61191171-61191190 Msa0175290:intron 50.0%
CCGTAGCTCAGGAAGAAAAC+AGG - chr1_4:61191271-61191290 Msa0175290:intron 50.0%
ACAGGCTATTTGCAGGGACT+CGG - chr1_4:61191289-61191308 Msa0175290:intron 50.0%
GCACTCAAACAGCCATGCCT+CGG - chr1_4:61188250-61188269 Msa0175290:three_prime_UTR 55.0%
! TGAGTTGCAGTACCGAGGCA+TGG + chr1_4:61188265-61188284 None:intergenic 55.0%
AGGAGTGAGTTGCAGTACCG+AGG + chr1_4:61188270-61188289 None:intergenic 55.0%
TAGTCACTCTCTCCCCACCA+TGG + chr1_4:61189704-61189723 None:intergenic 55.0%
! ATGGTGGGGAGAGAGTGACT+AGG - chr1_4:61189703-61189722 Msa0175290:intron 55.0%
TGGGGAGAGAGTGACTAGGA+GGG - chr1_4:61189707-61189726 Msa0175290:intron 55.0%
GAGAGAGTGACTAGGAGGGA+AGG - chr1_4:61189711-61189730 Msa0175290:intron 55.0%
GAGAGTGACTAGGAGGGAAG+GGG - chr1_4:61189713-61189732 Msa0175290:intron 55.0%
AGAGTGACTAGGAGGGAAGG+GGG - chr1_4:61189714-61189733 Msa0175290:intron 55.0%
! GGGGGGGGATTATGGTGTTT+TGG - chr1_4:61189769-61189788 Msa0175290:intron 55.0%
TGGTAGGGAAATGCTGTGCG+CGG - chr1_4:61189827-61189846 Msa0175290:intron 55.0%
!!! GGCTTTTCAGCAGGTTGGTG+TGG - chr1_4:61190289-61190308 Msa0175290:intron 55.0%
AATCTCGGGGGTGGCAATAC+AGG + chr1_4:61190353-61190372 None:intergenic 55.0%
CCAGGAATGGGAAATCTCGG+GGG + chr1_4:61190365-61190384 None:intergenic 55.0%
CCGAGATTTCCCATTCCTGG+AGG - chr1_4:61190365-61190384 Msa0175290:intron 55.0%
GGTGGTTGACCTCCAGGAAT+GGG + chr1_4:61190377-61190396 None:intergenic 55.0%
TGGTGGTTGACCTCCAGGAA+TGG + chr1_4:61190378-61190397 None:intergenic 55.0%
! GGTCTGAATCCTGGCATTGG+TGG + chr1_4:61190395-61190414 None:intergenic 55.0%
GGCATGAGAGGTCTGAATCC+TGG + chr1_4:61190404-61190423 None:intergenic 55.0%
GGTAAAGGTCGAGGCATGAG+AGG + chr1_4:61190416-61190435 None:intergenic 55.0%
CCAGGAACAGGTAAAGGTCG+AGG + chr1_4:61190425-61190444 None:intergenic 55.0%
CCTCGACCTTTACCTGTTCC+TGG - chr1_4:61190422-61190441 Msa0175290:intron 55.0%
AAACATTCACCTGGTGCCCC+AGG + chr1_4:61190443-61190462 None:intergenic 55.0%
!! CCAGGTGGAGGCATCATTTG+TGG + chr1_4:61190949-61190968 None:intergenic 55.0%
CCACAAATGATGCCTCCACC+TGG - chr1_4:61190946-61190965 Msa0175290:intron 55.0%
TAGCTGACCTGGTATCTGGG+GGG + chr1_4:61190974-61190993 None:intergenic 55.0%
! CGAATGAAGGTGGCCTTGGT+AGG + chr1_4:61191002-61191021 None:intergenic 55.0%
! CTTCCAGGAACTGTTGGTGG+GGG + chr1_4:61191027-61191046 None:intergenic 55.0%
GCTTCCAGGAACTGTTGGTG+GGG + chr1_4:61191028-61191047 None:intergenic 55.0%
GTGCTTCCAGGAACTGTTGG+TGG + chr1_4:61191030-61191049 None:intergenic 55.0%
GTGGTGCTTCCAGGAACTGT+TGG + chr1_4:61191033-61191052 None:intergenic 55.0%
!! GAGGGAGCACCATTAGAAGG+TGG + chr1_4:61191060-61191079 None:intergenic 55.0%
!! AGATGATGGTGCCGGTGGAT+TGG + chr1_4:61191109-61191128 None:intergenic 55.0%
AATCCACCGGCACCATCATC+TGG - chr1_4:61191108-61191127 Msa0175290:intron 55.0%
! TACCCTCCAGATGATGGTGC+CGG + chr1_4:61191117-61191136 None:intergenic 55.0%
GCACCATCATCTGGAGGGTA+TGG - chr1_4:61191117-61191136 Msa0175290:intron 55.0%
GCTCTCAGGTGCTTGAGCAT+TGG + chr1_4:61191160-61191179 None:intergenic 55.0%
! TATGGGACAGAGTGTCCGGC+TGG - chr1_4:61188664-61188683 Msa0175290:CDS 60.0%
GTGGGGAGAGAGTGACTAGG+AGG - chr1_4:61189706-61189725 Msa0175290:intron 60.0%
GAGTGACTAGGAGGGAAGGG+GGG - chr1_4:61189715-61189734 Msa0175290:intron 60.0%
AGTGACTAGGAGGGAAGGGG+GGG - chr1_4:61189716-61189735 Msa0175290:intron 60.0%
! GCAAGCTGCGGCTTTTCAGC+AGG - chr1_4:61190280-61190299 Msa0175290:intron 60.0%
! GCTGCGGCTTTTCAGCAGGT+TGG - chr1_4:61190284-61190303 Msa0175290:intron 60.0%
GGGGTGGCAATACAGGAGGA+AGG + chr1_4:61190346-61190365 None:intergenic 60.0%
GGAATGGGAAATCTCGGGGG+TGG + chr1_4:61190362-61190381 None:intergenic 60.0%
CCCCCGAGATTTCCCATTCC+TGG - chr1_4:61190362-61190381 Msa0175290:intron 60.0%
!! GGCATTGGTGGTTGACCTCC+AGG + chr1_4:61190383-61190402 None:intergenic 60.0%
GGAGGTCAACCACCAATGCC+AGG - chr1_4:61190383-61190402 Msa0175290:intron 60.0%
GGTGCCCCAGGAACAGGTAA+AGG + chr1_4:61190431-61190450 None:intergenic 60.0%
! TTACCTGTTCCTGGGGCACC+AGG - chr1_4:61190431-61190450 Msa0175290:intron 60.0%
! GGCATGGTGTTAGGTGCGGA+AGG + chr1_4:61190928-61190947 None:intergenic 60.0%
GGAGCGAATGAAGGTGGCCT+TGG + chr1_4:61191006-61191025 None:intergenic 60.0%
! GTTGGTGGGGGAGCGAATGA+AGG + chr1_4:61191015-61191034 None:intergenic 60.0%
CACCGGCACCATCATCTGGA+GGG - chr1_4:61191112-61191131 Msa0175290:intron 60.0%
TAGGTGGGACCGGGTGTGGA+AGG + chr1_4:61189084-61189103 None:intergenic 65.0%
CATGTAGGTGGGACCGGGTG+TGG + chr1_4:61189088-61189107 None:intergenic 65.0%
CACACCCGGTCCCACCTACA+TGG - chr1_4:61189086-61189105 Msa0175290:intron 65.0%
TCGGAACCATGGGGCCATGG+TGG - chr1_4:61189687-61189706 Msa0175290:intron 65.0%
CGGAACCATGGGGCCATGGT+GGG - chr1_4:61189688-61189707 Msa0175290:intron 65.0%
GGAACCATGGGGCCATGGTG+GGG - chr1_4:61189689-61189708 Msa0175290:intron 65.0%
GTGACTAGGAGGGAAGGGGG+GGG - chr1_4:61189717-61189736 Msa0175290:intron 65.0%
TGACTAGGAGGGAAGGGGGG+GGG - chr1_4:61189718-61189737 Msa0175290:intron 65.0%
CTCGGGGGTGGCAATACAGG+AGG + chr1_4:61190350-61190369 None:intergenic 65.0%
TCACCTGGTGCCCCAGGAAC+AGG + chr1_4:61190437-61190456 None:intergenic 65.0%
GGTGGGGGAGCGAATGAAGG+TGG + chr1_4:61191012-61191031 None:intergenic 65.0%
GCTCCCCCACCAACAGTTCC+TGG - chr1_4:61191021-61191040 Msa0175290:intron 65.0%
!! GGTGGTGCTGTGGTGCTTCC+AGG + chr1_4:61191042-61191061 None:intergenic 65.0%
! CCTCCAGATGATGGTGCCGG+TGG + chr1_4:61191114-61191133 None:intergenic 65.0%
CCACCGGCACCATCATCTGG+AGG - chr1_4:61191111-61191130 Msa0175290:intron 65.0%
CGGTCGGAACCATGGGGCCA+TGG - chr1_4:61189684-61189703 Msa0175290:intron 70.0%
CTCTCCCCACCATGGCCCCA+TGG + chr1_4:61189696-61189715 None:intergenic 70.0%
GACTAGGAGGGAAGGGGGGG+GGG - chr1_4:61189719-61189738 Msa0175290:intron 70.0%
ACTAGGAGGGAAGGGGGGGG+GGG - chr1_4:61189720-61189739 Msa0175290:intron 70.0%
!! ATCTGGGGGGCACCAGGTGG+AGG + chr1_4:61190961-61190980 None:intergenic 70.0%
!! GGTATCTGGGGGGCACCAGG+TGG + chr1_4:61190964-61190983 None:intergenic 70.0%
!! CCTGGTATCTGGGGGGCACC+AGG + chr1_4:61190967-61190986 None:intergenic 70.0%
CCTGGTGCCCCCCAGATACC+AGG - chr1_4:61190964-61190983 Msa0175290:intron 70.0%
CTAGGAGGGAAGGGGGGGGG+GGG - chr1_4:61189721-61189740 Msa0175290:intron 75.0%
TAGGAGGGAAGGGGGGGGGG+GGG - chr1_4:61189722-61189741 Msa0175290:intron 75.0%
! AGGAGGGAAGGGGGGGGGGG+GGG - chr1_4:61189723-61189742 Msa0175290:intron 80.0%
! GGGGGGGGGGGGGGGGATTA+TGG - chr1_4:61189761-61189780 Msa0175290:intron 80.0%
! GGAGGGAAGGGGGGGGGGGG+GGG - chr1_4:61189724-61189743 Msa0175290:intron 85.0%
! GAGGGAAGGGGGGGGGGGGG+GGG - chr1_4:61189725-61189744 Msa0175290:intron 85.0%
! AGGGAAGGGGGGGGGGGGGG+GGG - chr1_4:61189726-61189745 Msa0175290:intron 85.0%
! GGGAAGGGGGGGGGGGGGGG+GGG - chr1_4:61189727-61189746 Msa0175290:intron 90.0%
! GGAAGGGGGGGGGGGGGGGG+GGG - chr1_4:61189728-61189747 Msa0175290:intron 90.0%
! GAAGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189729-61189748 Msa0175290:intron 90.0%
! AAGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189730-61189749 Msa0175290:intron 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr1_4:61189731-61189750 Msa0175290:intron 95.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61188067 61191639 61188067 ID=Msa0175290;Name=Msa0175290
chr1_4 mRNA 61188067 61191639 61188067 ID=Msa0175290-mRNA-1;Parent=Msa0175290;Name=Msa0175290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=197|1|1|1|1|1|5|451|205
chr1_4 exon 61188067 61188786 61188067 ID=Msa0175290-mRNA-1:exon:19556;Parent=Msa0175290-mRNA-1
chr1_4 exon 61189254 61189509 61189254 ID=Msa0175290-mRNA-1:exon:19555;Parent=Msa0175290-mRNA-1
chr1_4 exon 61189601 61189642 61189601 ID=Msa0175290-mRNA-1:exon:19554;Parent=Msa0175290-mRNA-1
chr1_4 exon 61191301 61191343 61191301 ID=Msa0175290-mRNA-1:exon:19553;Parent=Msa0175290-mRNA-1
chr1_4 exon 61191435 61191639 61191435 ID=Msa0175290-mRNA-1:exon:19552;Parent=Msa0175290-mRNA-1
chr1_4 five_prime_UTR 61191443 61191639 61191443 ID=Msa0175290-mRNA-1:five_prime_utr;Parent=Msa0175290-mRNA-1
chr1_4 CDS 61191435 61191442 61191435 ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1
chr1_4 CDS 61191301 61191343 61191301 ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1
chr1_4 CDS 61189601 61189642 61189601 ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1
chr1_4 CDS 61189254 61189509 61189254 ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1
chr1_4 CDS 61188518 61188786 61188518 ID=Msa0175290-mRNA-1:cds;Parent=Msa0175290-mRNA-1
chr1_4 three_prime_UTR 61188067 61188517 61188067 ID=Msa0175290-mRNA-1:three_prime_utr;Parent=Msa0175290-mRNA-1
Gene Sequence

>Msa0175290

ATGCCTCGGTACTATTGTGACTACTGCGATACTTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCATAATTCTGGTTATAAACACAAGGCTAATGTAAGGTCCTACTATCAGCAATTTGAAGAACAACAAACCCAAAGTTTAATTGATCAACGGATCAAAGAACATCTTGGGCAAGCTGCGGCTTTTCAGCAGGTTGGTGTGGGTTATAATAATCTAATGGTTCAAAGACCAAACCTTCCTCCTGTATTGCCACCCCCGAGATTTCCCATTCCTGGAGGTCAACCACCAATGCCAGGATTCAGACCTCTCATGCCTCGACCTTTACCTGTTCCTGGGGCACCAGGGTATCCTTCCGCACCTAACACCATGCCACAAATGATGCCTCCACCTGGTGCCCCCCAGATACCAGGTCAGCTAAATACCCTACCAAGGCCACCTTCATTCGCTCCCCCACCAACAGTTCCTGGAAGCACCACAGCACCACCTTCTAATGGTGCTCCCTCTATGGCATCATCAGCCATGTATCAAGCCAATCCACCGGCACCATCATCTGGAGGGTATGGTAATTCCAATTCCAATTCCAATGCTCAAGCACCTGAGAGCAATCAATGA

Protein sequence

>Msa0175290

MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVGYNNLMVQRPNLPPVLPPPRFPIPGGQPPMPGFRPLMPRPLPVPGAPGYPSAPNTMPQMMPPPGAPQIPGQLNTLPRPPSFAPPPTVPGSTTAPPSNGAPSMASSAMYQANPPAPSSGGYGNSNSNSNAQAPESNQ*