AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128130 MtrunA17_Chr7g0271411 90.323 310 25 2 1 310 1 305 9.68e-164 457
Msa1128130 MtrunA17_Chr1g0193131 56.388 227 64 10 42 240 279 498 2.85e-49 173
Msa1128130 MtrunA17_Chr5g0443331 57.037 135 55 2 137 271 86 217 2.20e-38 137
Msa1128130 MtrunA17_Chr3g0096451 63.551 107 36 1 139 245 93 196 2.92e-38 136
Msa1128130 MtrunA17_Chr2g0304061 62.069 87 32 1 161 247 158 243 1.20e-31 120
Msa1128130 MtrunA17_Chr8g0381081 46.903 113 52 3 139 246 34 143 6.44e-28 106
Msa1128130 MtrunA17_Chr1g0177171 40.667 150 80 4 102 246 347 492 1.41e-26 108
Msa1128130 MtrunA17_Chr4g0040911 49.153 118 47 3 161 275 37 144 2.52e-26 102
Msa1128130 MtrunA17_Chr8g0378621 37.209 172 90 4 136 302 339 497 1.25e-25 106
Msa1128130 MtrunA17_Chr8g0378361 51.042 96 45 2 159 253 28 122 1.34e-25 100
Msa1128130 MtrunA17_Chr5g0401301 41.667 144 72 4 105 244 279 414 1.77e-25 105
Msa1128130 MtrunA17_Chr4g0075031 51.613 93 44 1 154 245 375 467 5.53e-25 104
Msa1128130 MtrunA17_Chr8g0378371 54.545 88 37 2 160 247 32 116 4.25e-24 94.7
Msa1128130 MtrunA17_Chr3g0121271 39.695 131 68 3 148 277 349 469 9.87e-23 98.2
Msa1128130 MtrunA17_Chr8g0380231 59.155 71 29 0 168 238 24 94 4.93e-22 88.6
Msa1128130 MtrunA17_Chr8g0378381 50.562 89 38 3 160 245 31 116 5.14e-22 89.4
Msa1128130 MtrunA17_Chr1g0154991 47.706 109 46 5 147 252 8 108 7.16e-22 88.6
Msa1128130 MtrunA17_Chr5g0447651 49.412 85 42 1 161 244 30 114 1.63e-21 87.8
Msa1128130 MtrunA17_Chr5g0434591 42.056 107 61 1 154 259 353 459 1.70e-21 94.4
Msa1128130 MtrunA17_Chr5g0439251 47.253 91 47 1 154 243 375 465 4.36e-21 93.2
Msa1128130 MtrunA17_Chr3g0110371 43.299 97 54 1 154 249 354 450 5.37e-21 93.2
Msa1128130 MtrunA17_Chr4g0034901 43.860 114 54 3 143 248 352 463 2.32e-20 90.9
Msa1128130 MtrunA17_Chr4g0043511 44.340 106 57 2 160 264 419 523 3.25e-20 90.9
Msa1128130 MtrunA17_Chr3g0120401 45.977 87 45 2 161 246 157 242 3.60e-20 87.8
Msa1128130 MtrunA17_Chr5g0419121 47.368 95 46 3 156 247 17 110 5.43e-20 87.4
Msa1128130 MtrunA17_Chr8g0378401 50.602 83 35 3 160 239 31 110 1.87e-19 82.4
Msa1128130 MtrunA17_Chr1g0161011 40.909 110 59 2 154 262 354 458 2.41e-19 88.2
Msa1128130 MtrunA17_Chr4g0076131 41.379 87 50 1 160 245 27 113 4.54e-19 81.3
Msa1128130 MtrunA17_Chr4g0076141 44.304 79 43 1 161 238 13 91 7.10e-19 80.1
Msa1128130 MtrunA17_Chr6g0487261 40.541 111 61 4 136 244 347 454 2.72e-18 85.1
Msa1128130 MtrunA17_Chr4g0043151 47.253 91 45 3 161 249 21 110 3.00e-18 81.3
Msa1128130 MtrunA17_Chr1g0213651 44.706 85 45 2 161 244 276 359 4.66e-18 83.6
Msa1128130 MtrunA17_Chr4g0061401 44.944 89 46 3 157 244 20 106 7.37e-18 80.9
Msa1128130 MtrunA17_Chr8g0389741 33.099 142 84 3 136 271 348 484 2.22e-17 82.4
Msa1128130 MtrunA17_Chr2g0313891 44.186 86 45 2 160 244 29 112 1.85e-16 73.9
Msa1128130 MtrunA17_Chr7g0234821 38.983 118 67 3 133 248 348 462 2.90e-16 79.0
Msa1128130 MtrunA17_Chr3g0144531 39.815 108 59 3 144 248 354 458 2.95e-16 79.0
Msa1128130 MtrunA17_Chr8g0339191 36.082 97 61 1 152 247 365 461 3.91e-16 78.6
Msa1128130 MtrunA17_Chr2g0306311 40.816 98 53 4 160 255 398 492 1.48e-13 70.9
Msa1128130 MtrunA17_Chr7g0223961 41.379 87 45 3 159 242 363 446 1.77e-13 70.5
Msa1128130 MtrunA17_Chr3g0129341 35.714 112 62 5 141 245 348 456 9.73e-13 68.6
Msa1128130 MtrunA17_Chr4g0062771 34.483 116 71 4 160 273 373 485 2.31e-12 67.4
Msa1128130 MtrunA17_Chr4g0046311 36.905 84 52 1 157 239 369 452 1.19e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128130 AT1G09460.1 59.375 128 48 2 121 248 99 222 2.64e-37 135
Msa1128130 AT2G30933.1 61.798 89 34 0 160 248 81 169 8.40e-34 124
Msa1128130 AT1G29380.3 58.889 90 37 0 160 249 147 236 1.18e-32 122
Msa1128130 AT1G29380.1 58.824 85 35 0 160 244 147 231 2.62e-31 119
Msa1128130 AT2G30933.2 62.025 79 30 0 160 238 81 159 2.22e-30 112
Msa1128130 AT2G30933.3 62.025 79 30 0 160 238 81 159 2.22e-30 112
Msa1128130 AT1G29380.4 58.750 80 33 0 160 239 147 226 4.16e-29 111
Msa1128130 AT1G29380.2 58.750 80 33 0 160 239 147 226 4.16e-29 111
Msa1128130 AT1G11820.2 46.032 126 64 2 148 269 368 493 2.25e-27 112
Msa1128130 AT4G05430.3 45.133 113 57 2 141 248 24 136 3.58e-27 104
Msa1128130 AT4G05430.1 49.462 93 46 1 157 248 19 111 6.14e-27 103
Msa1128130 AT3G58100.1 46.218 119 62 2 161 278 41 158 1.91e-26 103
Msa1128130 AT3G58100.2 46.218 119 62 2 161 278 117 234 5.65e-26 103
Msa1128130 AT4G05430.2 47.115 104 50 2 141 239 24 127 3.60e-25 98.2
Msa1128130 AT2G01630.1 44.340 106 58 1 154 258 353 458 5.68e-25 105
Msa1128130 AT4G26830.1 43.590 117 53 2 131 246 349 453 8.72e-25 103
Msa1128130 AT1G66250.1 37.415 147 81 4 154 297 361 499 9.68e-25 104
Msa1128130 AT4G26830.2 43.590 117 53 2 131 246 353 457 1.08e-24 103
Msa1128130 AT5G55180.1 52.222 90 42 1 158 246 369 458 1.86e-24 103
Msa1128130 AT2G05790.1 33.750 240 138 8 23 246 236 470 2.02e-24 103
Msa1128130 AT5G35740.1 47.368 95 46 3 154 245 23 116 1.02e-23 94.0
Msa1128130 AT4G13600.1 43.182 132 55 4 161 274 61 190 4.30e-23 95.5
Msa1128130 AT1G18650.1 46.237 93 48 2 157 248 17 108 2.82e-22 92.4
Msa1128130 AT1G11820.3 50.538 93 45 1 148 239 368 460 2.83e-22 97.1
Msa1128130 AT1G18650.2 46.237 93 48 2 157 248 17 108 3.36e-22 90.5
Msa1128130 AT5G55180.2 53.012 83 38 1 158 239 369 451 1.31e-21 95.1
Msa1128130 AT5G67460.1 38.571 140 70 5 113 244 246 377 2.57e-21 93.6
Msa1128130 AT4G34480.3 47.674 86 43 2 161 245 253 337 4.70e-21 92.8
Msa1128130 AT4G34480.1 47.674 86 43 2 161 245 364 448 6.65e-21 93.2
Msa1128130 AT2G01630.3 46.512 86 45 1 154 238 353 438 3.65e-20 90.9
Msa1128130 AT5G67460.2 38.519 135 67 5 113 239 246 372 7.16e-20 89.4
Msa1128130 AT5G24318.3 41.121 107 57 3 141 246 217 318 1.17e-19 88.2
Msa1128130 AT2G16230.1 44.118 102 52 3 161 261 366 463 1.31e-19 89.4
Msa1128130 AT5G24318.1 41.121 107 57 3 141 246 356 457 1.73e-19 89.0
Msa1128130 AT3G55430.1 42.553 94 52 2 152 244 357 449 1.81e-19 88.6
Msa1128130 AT5G63240.1 38.393 112 62 4 139 246 20 128 9.17e-19 81.3
Msa1128130 AT5G63250.1 40.816 98 53 3 153 246 34 130 1.22e-18 80.9
Msa1128130 AT1G66870.1 38.298 94 55 2 153 244 18 110 2.87e-18 79.3
Msa1128130 AT1G66870.2 38.298 94 55 2 153 244 45 137 3.67e-18 79.7
Msa1128130 AT2G04910.2 40.860 93 54 1 154 245 8 100 3.90e-18 78.6
Msa1128130 AT1G79480.2 44.706 85 45 2 161 244 310 393 5.94e-18 84.0
Msa1128130 AT1G79480.1 44.706 85 45 2 161 244 311 394 6.09e-18 84.0
Msa1128130 AT5G24318.2 42.424 99 51 3 141 238 356 449 1.08e-17 83.6
Msa1128130 AT1G66852.1 34.783 92 60 0 153 244 18 109 1.27e-17 77.4
Msa1128130 AT5G63225.1 41.860 86 48 2 160 244 24 108 1.53e-17 77.4
Msa1128130 AT2G43660.2 41.758 91 52 1 159 248 33 123 3.36e-17 76.6
Msa1128130 AT2G43660.1 41.758 91 52 1 159 248 32 122 3.59e-17 76.6
Msa1128130 AT4G16165.1 38.710 93 56 1 153 244 18 110 3.60e-17 76.3
Msa1128130 AT5G56590.1 31.250 144 83 3 161 303 369 497 4.53e-17 82.0
Msa1128130 AT2G39640.1 35.246 122 68 3 136 247 426 546 6.34e-17 81.6
Msa1128130 AT2G39640.1 40.659 91 52 2 153 242 351 440 1.74e-14 74.3
Msa1128130 AT2G43670.1 40.426 94 53 2 153 245 27 118 9.42e-17 75.5
Msa1128130 AT1G69295.1 45.349 86 44 3 157 241 17 100 9.62e-17 78.2
Msa1128130 AT4G09465.1 40.217 92 53 2 156 246 26 116 1.02e-16 75.1
Msa1128130 AT4G09464.1 40.217 92 53 2 156 246 26 116 1.14e-16 75.1
Msa1128130 AT4G09467.1 40.217 92 53 2 156 246 26 116 1.14e-16 75.1
Msa1128130 AT1G66855.1 39.535 86 51 1 160 244 25 110 1.44e-16 74.7
Msa1128130 AT4G09462.1 40.217 92 53 2 156 246 24 114 1.46e-16 74.7
Msa1128130 AT5G08000.2 48.387 93 46 2 154 245 33 124 1.70e-16 77.4
Msa1128130 AT3G23770.1 39.048 105 60 2 145 248 374 475 1.79e-16 80.1
Msa1128130 AT2G04910.1 41.379 87 50 1 154 239 8 94 2.56e-16 74.3
Msa1128130 AT1G69295.2 45.349 86 44 3 157 241 13 96 3.12e-16 76.6
Msa1128130 AT4G09466.1 40.217 92 53 2 156 246 26 116 3.24e-16 73.9
Msa1128130 AT4G09090.1 42.529 87 48 2 161 246 31 116 5.07e-16 73.6
Msa1128130 AT5G61130.1 43.333 90 49 2 157 245 17 105 5.38e-16 75.5
Msa1128130 AT3G13560.4 40.625 96 56 1 161 255 362 457 1.28e-15 77.4
Msa1128130 AT3G13560.1 40.625 96 56 1 161 255 362 457 1.28e-15 77.4
Msa1128130 AT3G13560.2 40.625 96 56 1 161 255 362 457 1.28e-15 77.4
Msa1128130 AT3G13560.5 40.625 96 56 1 161 255 362 457 1.28e-15 77.4
Msa1128130 AT3G13560.3 40.625 96 56 1 161 255 362 457 1.28e-15 77.4
Msa1128130 AT4G29360.2 38.202 89 54 1 160 247 400 488 1.51e-15 77.4
Msa1128130 AT5G53600.1 39.785 93 53 2 153 244 21 111 1.67e-15 71.6
Msa1128130 AT4G29360.1 38.202 89 54 1 160 247 390 478 1.78e-15 77.0
Msa1128130 AT5G08000.1 48.276 87 43 2 160 245 20 105 1.89e-15 73.9
Msa1128130 AT2G42930.1 39.241 79 47 1 161 239 40 117 9.60e-15 70.5
Msa1128130 AT1G78520.1 42.529 87 47 2 160 245 31 115 1.01e-14 69.7
Msa1128130 AT5G63230.1 37.209 86 52 2 160 244 25 109 1.05e-14 69.7
Msa1128130 AT4G14080.1 35.897 117 67 3 137 248 364 477 1.47e-14 74.3
Msa1128130 AT1G26450.1 45.455 77 39 3 157 232 17 91 1.70e-14 71.2
Msa1128130 AT2G03505.3 36.458 96 57 3 157 249 17 111 3.36e-14 68.6
Msa1128130 AT2G03505.4 36.170 94 56 3 157 247 17 109 4.29e-14 69.7
Msa1128130 AT2G03505.1 36.170 94 56 3 157 247 17 109 4.29e-14 69.7
Msa1128130 AT2G03505.2 36.170 94 56 3 157 247 17 109 4.29e-14 69.7
Msa1128130 AT5G53610.1 41.176 85 47 2 161 244 28 110 9.13e-14 67.0
Msa1128130 AT3G07320.1 39.785 93 55 1 157 248 367 459 1.17e-13 71.6
Msa1128130 AT1G13830.2 43.373 83 40 4 158 238 32 109 7.58e-13 67.0
Msa1128130 AT1G13830.1 43.750 80 38 4 161 238 21 95 1.69e-12 65.9
Msa1128130 AT3G04010.1 41.935 93 48 4 160 249 373 462 7.20e-12 66.2
Msa1128130 AT4G17180.1 38.372 86 49 3 160 244 358 440 1.05e-11 65.9
Msa1128130 AT5G58090.1 41.573 89 46 4 160 245 361 446 1.27e-11 65.5
Msa1128130 AT2G29735.1 35.870 92 55 3 156 244 26 116 7.94e-11 58.9

Find 129 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAAGAAATTGTGTTTC+TGG 0.151251 7_3:+79921508 None:intergenic
ACTATGGTGTTGGTAAAATT+TGG 0.173757 7_3:-79919119 Msa1128130:three_prime_UTR
ACATCATCTCCAGTAGGTTT+TGG 0.266537 7_3:-79919687 Msa1128130:CDS
GCTGGATTTGTTGGTGATAA+TGG 0.267994 7_3:+79921093 None:intergenic
TAGAAAGACAGTAGAGTAGT+AGG 0.271212 7_3:-79919494 Msa1128130:three_prime_UTR
TTTGCTAAGCTGCATGGTTC+TGG 0.314068 7_3:-79919616 Msa1128130:CDS
AGTCCTCCATCTTCTTCTTC+AGG 0.320635 7_3:-79920937 Msa1128130:CDS
TTCAGGAACTGGAGTAGTTT+AGG 0.325211 7_3:-79919371 Msa1128130:three_prime_UTR
TGCATCTTCCCATCAGCTTC+AGG 0.344512 7_3:-79920562 Msa1128130:CDS
TTGTAACAGATCACAAGATT+TGG 0.357056 7_3:-79921248 Msa1128130:CDS
TAGAGCATGGAAGCTAACTA+TGG 0.359132 7_3:+79919558 None:intergenic
AGTGTAGATTGTGGTGTTCC+AGG 0.362624 7_3:+79920892 None:intergenic
AATATGTTTCTTTGATACTA+AGG 0.363586 7_3:+79921689 None:intergenic
TCTTGGCTATAATCAGATTC+AGG 0.369696 7_3:-79919388 Msa1128130:three_prime_UTR
GCTTACAAATCCAACATCTT+AGG 0.371314 7_3:-79919062 Msa1128130:three_prime_UTR
CCACCACCATCACCATTATC+AGG 0.376324 7_3:-79921006 Msa1128130:CDS
GTTCCTGTTCCTCCTGATAA+TGG 0.379708 7_3:+79920994 None:intergenic
ACCTTTATACCTTTAGTTCA+AGG 0.379755 7_3:-79921600 Msa1128130:five_prime_UTR
GGTGAATTTGCTGGATTTGT+TGG 0.382630 7_3:+79921084 None:intergenic
CATGGTTCTGGTGACATTAT+TGG 0.382811 7_3:-79919604 Msa1128130:CDS
GCTGCAACAAGCTGTGACTT+TGG 0.388632 7_3:-79920730 Msa1128130:CDS
TTGGATTCCTCTCATTCAAC+TGG 0.389358 7_3:-79919648 Msa1128130:CDS
GGCACAGGCACAGGCACATC+CGG 0.389361 7_3:-79920523 Msa1128130:CDS
TCCTTGAACTAAAGGTATAA+AGG 0.392920 7_3:+79921599 None:intergenic
GGAACTGTTGGTGGTGTAAC+AGG 0.393025 7_3:+79921057 None:intergenic
AGTGTGTGCATTGTTTGTTT+TGG 0.397338 7_3:-79919334 Msa1128130:three_prime_UTR
TTGTAAAGAATATAGGATAT+TGG 0.399613 7_3:+79918906 None:intergenic
AAGGCCTATCCTTGAACTAA+AGG 0.401117 7_3:+79921591 None:intergenic
TGTGTTTCTGGAATTTAGAA+TGG 0.403661 7_3:+79921520 None:intergenic
AGCAACAAATTTACTGTCAA+TGG 0.409812 7_3:+79918877 None:intergenic
CATATGTAAATCAACAACTA+TGG 0.412229 7_3:-79919135 Msa1128130:three_prime_UTR
GGAGGAGCTGGCGCAGGCAC+AGG 0.414477 7_3:-79920538 Msa1128130:CDS
CTTCTTCTTCAGGAGGTAGC+TGG 0.414888 7_3:-79920927 Msa1128130:CDS
GCTGGCGCAGGCACAGGCAC+AGG 0.415709 7_3:-79920532 Msa1128130:CDS
GACTATGCTTGTGGAACAAA+AGG 0.417962 7_3:-79920856 Msa1128130:CDS
CTATAATCAGATTCAGGAAC+TGG 0.422203 7_3:-79919382 Msa1128130:three_prime_UTR
TTCACTGGTGTTGTTCCTCC+TGG 0.427069 7_3:+79921036 None:intergenic
TGACAGTGACAGCGTTGAAA+TGG 0.428428 7_3:+79918952 None:intergenic
GAACTAAAGGTATAAAGGTT+AGG 0.428488 7_3:+79921604 None:intergenic
GATGCAAGTAGAAGCTTCAT+TGG 0.437577 7_3:+79921481 None:intergenic
GTTACACCACCAACAGTTCC+AGG 0.439114 7_3:-79921054 Msa1128130:CDS
ACAGGTACTGGTGAATTTGC+TGG 0.439151 7_3:+79921075 None:intergenic
AGAAATAACTGAGGACCTCT+TGG 0.442274 7_3:-79919405 Msa1128130:three_prime_UTR
AAGTCACAGCTTGTTGCAGC+AGG 0.460540 7_3:+79920733 None:intergenic
GTTGTTCCTCCTGGAACTGT+TGG 0.460619 7_3:+79921045 None:intergenic
TCAGCTTCAGGAGGAGGAGC+TGG 0.463929 7_3:-79920550 Msa1128130:CDS
GGTGTTGCACCTGGATTTGT+TGG 0.466876 7_3:+79921150 None:intergenic
AAACACAATTTCTTTCATCA+TGG 0.468138 7_3:-79921504 Msa1128130:exon
GGAATTTAGAATGGAGCTGT+TGG 0.469798 7_3:+79921529 None:intergenic
ACAGCTGGTGGAGTAGTAGA+AGG 0.473175 7_3:+79921117 None:intergenic
AAAATAAGTCATGTGGGTAC+TGG 0.473219 7_3:-79919280 Msa1128130:three_prime_UTR
AGAAAGACAGTAGAGTAGTA+GGG 0.474208 7_3:-79919493 Msa1128130:three_prime_UTR
AGAAGAAAATGAGAAAAGAT+AGG 0.477075 7_3:+79921453 None:intergenic
CAGTGATGATTGTTGGTGAT+GGG 0.480237 7_3:+79921205 None:intergenic
TCTGAATTTGCGAAAATGAA+AGG 0.480451 7_3:+79919003 None:intergenic
AGCTGGTGTGTGGCTAAACC+TGG 0.480971 7_3:-79920910 Msa1128130:CDS
GTTCCTCCTGGAACTGTTGG+TGG 0.482015 7_3:+79921048 None:intergenic
TGGGCCGCAAAGCTCTCCAT+TGG 0.483468 7_3:-79919667 Msa1128130:CDS
TCACCATTATCAGGAGGAAC+AGG 0.487525 7_3:-79920997 Msa1128130:CDS
TTCCCATCAGCTTCAGGAGG+AGG 0.492744 7_3:-79920556 Msa1128130:CDS
TCAGGAGGAGGAGCTGGCGC+AGG 0.502820 7_3:-79920544 Msa1128130:CDS
CTTTGCGGCCCAAAACCTAC+TGG 0.504420 7_3:+79919678 None:intergenic
CAACAAGCTGTGACTTTGGA+GGG 0.506706 7_3:-79920726 Msa1128130:CDS
ATCTACACTTCAAACAGCAT+TGG 0.509235 7_3:-79920878 Msa1128130:CDS
AAGCTTGAGTAAACAGATCA+AGG 0.510942 7_3:+79919449 None:intergenic
AGAAATAGTTGAAAATGCAT+TGG 0.517953 7_3:+79921323 None:intergenic
GATGGAGGACTTGTGCTTGA+AGG 0.519243 7_3:+79920949 None:intergenic
GTAAAATCGTAGTGGTCTGA+TGG 0.520816 7_3:+79919038 None:intergenic
GAGACCTTTGCTAAGCTGCA+TGG 0.522316 7_3:-79919622 Msa1128130:CDS
TATACCTTTAGTTCAAGGAT+AGG 0.525984 7_3:-79921595 Msa1128130:five_prime_UTR
GAAGGAACAGTGATGATTGT+TGG 0.527796 7_3:+79921198 None:intergenic
GCAACAAGCTGTGACTTTGG+AGG 0.530607 7_3:-79920727 Msa1128130:CDS
TCATTGTACTAACTAGTAGA+TGG 0.530763 7_3:-79919246 Msa1128130:three_prime_UTR
GAAGGTGGAGGATTTGTGAC+AGG 0.530909 7_3:+79920967 None:intergenic
TGTTATACAATTCTACAAGC+AGG 0.531967 7_3:-79919519 Msa1128130:three_prime_UTR
TAAATCAACAACTATGGTGT+TGG 0.532644 7_3:-79919129 Msa1128130:three_prime_UTR
GTTGGAGAAACTGTTGTGAC+AGG 0.533113 7_3:+79921168 None:intergenic
GAATCCAATGGAGAGCTTTG+CGG 0.535900 7_3:+79919663 None:intergenic
CCTGATAATGGTGATGGTGG+TGG 0.538366 7_3:+79921006 None:intergenic
CTCCTCCTCCTGAAGCTGAT+GGG 0.539809 7_3:+79920554 None:intergenic
TGAAGCTGATGGGAAGATGC+AGG 0.543799 7_3:+79920564 None:intergenic
ATTCAAGAAAATAAGTCATG+TGG 0.550923 7_3:-79919287 Msa1128130:three_prime_UTR
CTACCTCCTGAAGAAGAAGA+TGG 0.552545 7_3:+79920931 None:intergenic
ACAGTGATGATTGTTGGTGA+TGG 0.553424 7_3:+79921204 None:intergenic
GTTCCTCCTGATAATGGTGA+TGG 0.553903 7_3:+79921000 None:intergenic
GCTCCTCCTCCTGAAGCTGA+TGG 0.558816 7_3:+79920553 None:intergenic
GGACTTGTGCTTGAAGGTGG+AGG 0.559600 7_3:+79920955 None:intergenic
GTTGGTGATAATGGAACAGC+TGG 0.559840 7_3:+79921102 None:intergenic
GTAGTAGAAGGAACTGTGAC+AGG 0.561662 7_3:+79921129 None:intergenic
CAGGCACAGGCACATCCGGC+GGG 0.564968 7_3:-79920519 Msa1128130:intron
AGAGTAGTAGGGAGAGTTTG+TGG 0.566599 7_3:-79919482 Msa1128130:three_prime_UTR
ACAGTTTCTCCAACAAATCC+AGG 0.567466 7_3:-79921159 Msa1128130:CDS
TTCAGGAGGTAGCTGGTGTG+TGG 0.575773 7_3:-79920920 Msa1128130:CDS
TTCAAGAAAATAAGTCATGT+GGG 0.579136 7_3:-79919286 Msa1128130:three_prime_UTR
TACAGCGAGGAGATAGAGCA+TGG 0.583522 7_3:+79919545 None:intergenic
GTTGGTGGTGTAACAGGTAC+TGG 0.587227 7_3:+79921063 None:intergenic
ACTGTGACAGGTGTTGCACC+TGG 0.594459 7_3:+79921141 None:intergenic
GTTGTGACAGGATTGGTTGA+AGG 0.600451 7_3:+79921180 None:intergenic
ACAGCATTGGACTATGCTTG+TGG 0.604056 7_3:-79920865 Msa1128130:CDS
CCTCCATCTTCTTCTTCAGG+AGG 0.605110 7_3:-79920934 Msa1128130:CDS
GTCTGATGGACCTAAGATGT+TGG 0.605429 7_3:+79919052 None:intergenic
AACAAGCTGTGACTTTGGAG+GGG 0.609446 7_3:-79920725 Msa1128130:CDS
AGAGCATGGAAGCTAACTAT+GGG 0.609588 7_3:+79919559 None:intergenic
AGAAACTGTTGTGACAGGAT+TGG 0.611206 7_3:+79921173 None:intergenic
CCTCCTGATAATGGTGATGG+TGG 0.614026 7_3:+79921003 None:intergenic
TTATTGGTCAGTGGAAGACT+CGG 0.614232 7_3:-79919588 Msa1128130:CDS
TGTTGAATGCAAAAGAAGCA+TGG 0.614920 7_3:+79920773 None:intergenic
GATTGTAACAGCTACCACCT+TGG 0.617114 7_3:+79920812 None:intergenic
GTTGAATGAGAGGAATCCAA+TGG 0.618258 7_3:+79919651 None:intergenic
CTGGTGACATTATTGGTCAG+TGG 0.619927 7_3:-79919597 Msa1128130:CDS
AGAACCATGCAGCTTAGCAA+AGG 0.620135 7_3:+79919618 None:intergenic
TCTCAGACCAGTTGAATGAG+AGG 0.621991 7_3:+79919641 None:intergenic
ACAGGCACAGGCACATCCGG+CGG 0.622496 7_3:-79920520 Msa1128130:CDS
GGAGGACTTGTGCTTGAAGG+TGG 0.626099 7_3:+79920952 None:intergenic
ATCTTCCCATCAGCTTCAGG+AGG 0.632762 7_3:-79920559 Msa1128130:CDS
GGTGATAATGGAACAGCTGG+TGG 0.636040 7_3:+79921105 None:intergenic
GGTGGTGGATAAGAATTCAC+TGG 0.638656 7_3:+79921021 None:intergenic
GGTACTACATCATCTCCAGT+AGG 0.642872 7_3:-79919693 Msa1128130:CDS
ACTAGGATTAGTGCTAGTAA+TGG 0.644779 7_3:+79920696 None:intergenic
TGAATCTGATTATAGCCAAG+AGG 0.657778 7_3:+79919390 None:intergenic
ATGTAAAAGTAAAATCGTAG+TGG 0.671959 7_3:+79919030 None:intergenic
GATTGTTCACAAATAAACCA+AGG 0.679441 7_3:-79920829 Msa1128130:CDS
CCTCCTGAAGAAGAAGATGG+AGG 0.682773 7_3:+79920934 None:intergenic
CCACCATCACCATTATCAGG+AGG 0.700034 7_3:-79921003 Msa1128130:CDS
TTCAACAGCAGAAATAACTG+AGG 0.709826 7_3:-79919414 Msa1128130:three_prime_UTR
TGTTCACAAATAAACCAAGG+TGG 0.741309 7_3:-79920826 Msa1128130:CDS
GCTGTTTGAAGTGTAGATTG+TGG 0.741949 7_3:+79920883 None:intergenic
TTGTATAACAAACTACAGCG+AGG 0.756170 7_3:+79919532 None:intergenic
ACACCACCAACAGTTCCAGG+AGG 0.766003 7_3:-79921051 Msa1128130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTGTTTTAGAAATTTTA+AGG - chr7_3:79920302-79920321 Msa1128130:intron 15.0%
!!! TTTGATTTGATTTTATCTTT+TGG + chr7_3:79920501-79920520 None:intergenic 15.0%
!!! TTTTCAACTTATTTTCATAA+GGG + chr7_3:79920758-79920777 None:intergenic 15.0%
!! ACAAAGAAGAAAAATCAAAA+TGG + chr7_3:79918925-79918944 None:intergenic 20.0%
!! AATATGTTTCTTTGATACTA+AGG + chr7_3:79918987-79919006 None:intergenic 20.0%
!! TGTAAAAATAGCATTAAACA+AGG + chr7_3:79919295-79919314 None:intergenic 20.0%
!! ATTATAGATTAGATCTTACT+AGG + chr7_3:79919997-79920016 None:intergenic 20.0%
!! CAAGCATAATATGAAAAATT+AGG + chr7_3:79920030-79920049 None:intergenic 20.0%
!! ATTTGAATTGAGTATCTTAT+TGG + chr7_3:79920241-79920260 None:intergenic 20.0%
!! ATACTCAATTCAAATATCTA+CGG - chr7_3:79920246-79920265 Msa1128130:intron 20.0%
!!! TTACAAAAAAGACATTGATT+AGG + chr7_3:79920328-79920347 None:intergenic 20.0%
!! TAAGCTATAAGCTTAAAAAT+GGG + chr7_3:79920581-79920600 None:intergenic 20.0%
!! ATAAGCTATAAGCTTAAAAA+TGG + chr7_3:79920582-79920601 None:intergenic 20.0%
!!! ATATCTAAAACTAGCTTATA+GGG + chr7_3:79920694-79920713 None:intergenic 20.0%
!!! AATATCTAAAACTAGCTTAT+AGG + chr7_3:79920695-79920714 None:intergenic 20.0%
!!! GTTTTCAACTTATTTTCATA+AGG + chr7_3:79920759-79920778 None:intergenic 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - chr7_3:79920765-79920784 Msa1128130:CDS 20.0%
!! ACTAAGATTAATACATCAAT+AGG - chr7_3:79920902-79920921 Msa1128130:CDS 20.0%
!! TTGTAAAGAATATAGGATAT+TGG + chr7_3:79921770-79921789 None:intergenic 20.0%
!!! GCAATTTTTGTAAAGAATAT+AGG + chr7_3:79921777-79921796 None:intergenic 20.0%
!! ATTTTTCTTCTTTGTGCAAA+TGG - chr7_3:79918930-79918949 Msa1128130:three_prime_UTR 25.0%
!! TGATACTAAGGAAATGTTTT+TGG + chr7_3:79918975-79918994 None:intergenic 25.0%
!! TGTAGATGTAATGCTTTTAA+AGG + chr7_3:79919104-79919123 None:intergenic 25.0%
! AAACACAATTTCTTTCATCA+TGG - chr7_3:79919169-79919188 Msa1128130:intron 25.0%
! AGAAGAAAATGAGAAAAGAT+AGG + chr7_3:79919223-79919242 None:intergenic 25.0%
! AGAAATAGTTGAAAATGCAT+TGG + chr7_3:79919353-79919372 None:intergenic 25.0%
!! AATGCATTTTCAACTATTTC+TGG - chr7_3:79919352-79919371 Msa1128130:three_prime_UTR 25.0%
!!! AGTATCTTATTGGCTTAAAA+AGG + chr7_3:79920231-79920250 None:intergenic 25.0%
!!! AAGTTGTTTTCACTTTTCAT+AGG - chr7_3:79920540-79920559 Msa1128130:CDS 25.0%
!!! AGTTGTTTTCACTTTTCATA+GGG - chr7_3:79920541-79920560 Msa1128130:CDS 25.0%
!! TATCTAAAACTAGCTTATAG+GGG + chr7_3:79920693-79920712 None:intergenic 25.0%
! GATTAATACATCAATAGGTA+TGG - chr7_3:79920907-79920926 Msa1128130:CDS 25.0%
! ATTCAAGAAAATAAGTCATG+TGG - chr7_3:79921386-79921405 Msa1128130:intron 25.0%
! TTCAAGAAAATAAGTCATGT+GGG - chr7_3:79921387-79921406 Msa1128130:intron 25.0%
! GACAATGATTTAAACAACTA+GGG + chr7_3:79921504-79921523 None:intergenic 25.0%
! TGACAATGATTTAAACAACT+AGG + chr7_3:79921505-79921524 None:intergenic 25.0%
! CATATGTAAATCAACAACTA+TGG - chr7_3:79921538-79921557 Msa1128130:five_prime_UTR 25.0%
! ATGTAAAAGTAAAATCGTAG+TGG + chr7_3:79921646-79921665 None:intergenic 25.0%
! GAACTAAAGGTATAAAGGTT+AGG + chr7_3:79919072-79919091 None:intergenic 30.0%
! ACCTTTATACCTTTAGTTCA+AGG - chr7_3:79919073-79919092 Msa1128130:three_prime_UTR 30.0%
! TCCTTGAACTAAAGGTATAA+AGG + chr7_3:79919077-79919096 None:intergenic 30.0%
! TATACCTTTAGTTCAAGGAT+AGG - chr7_3:79919078-79919097 Msa1128130:three_prime_UTR 30.0%
!! TGTGTTTCTGGAATTTAGAA+TGG + chr7_3:79919156-79919175 None:intergenic 30.0%
GATGAAAGAAATTGTGTTTC+TGG + chr7_3:79919168-79919187 None:intergenic 30.0%
! TTTCTCATTTTCTTCTGTTC+TGG - chr7_3:79919227-79919246 Msa1128130:three_prime_UTR 30.0%
!! GCTACTTTCAAATTCTTTTC+AGG - chr7_3:79919325-79919344 Msa1128130:three_prime_UTR 30.0%
TTGTAACAGATCACAAGATT+TGG - chr7_3:79919425-79919444 Msa1128130:three_prime_UTR 30.0%
GATTGTTCACAAATAAACCA+AGG - chr7_3:79919844-79919863 Msa1128130:intron 30.0%
!! GGAATGAGAACTTTGAAATA+TGG - chr7_3:79920365-79920384 Msa1128130:intron 30.0%
AGCATAATTTAGACCTTGTT+TGG - chr7_3:79920402-79920421 Msa1128130:intron 30.0%
TTAAGCTGTATATCCAAACA+AGG + chr7_3:79920418-79920437 None:intergenic 30.0%
TTGACTAAAAAAGACCAGTT+TGG - chr7_3:79920617-79920636 Msa1128130:intron 30.0%
!!! TTCTGAAACTGTTTTAGACA+TGG + chr7_3:79920791-79920810 None:intergenic 30.0%
TGTTATACAATTCTACAAGC+AGG - chr7_3:79921154-79921173 Msa1128130:CDS 30.0%
TCATTGTACTAACTAGTAGA+TGG - chr7_3:79921427-79921446 Msa1128130:intron 30.0%
TAAATCAACAACTATGGTGT+TGG - chr7_3:79921544-79921563 Msa1128130:five_prime_UTR 30.0%
!! ACTATGGTGTTGGTAAAATT+TGG - chr7_3:79921554-79921573 Msa1128130:five_prime_UTR 30.0%
TCTGAATTTGCGAAAATGAA+AGG + chr7_3:79921673-79921692 None:intergenic 30.0%
!!! TTGAGATCTTGCTTTTTGGA+AGG + chr7_3:79919387-79919406 None:intergenic 35.0%
!!! GACTTTGAGATCTTGCTTTT+TGG + chr7_3:79919391-79919410 None:intergenic 35.0%
ATCTACACTTCAAACAGCAT+TGG - chr7_3:79919795-79919814 Msa1128130:intron 35.0%
TGTTCACAAATAAACCAAGG+TGG - chr7_3:79919847-79919866 Msa1128130:intron 35.0%
!!! GCATGGTTTTGAAGTGAATT+TGG + chr7_3:79919886-79919905 None:intergenic 35.0%
TGTTGAATGCAAAAGAAGCA+TGG + chr7_3:79919903-79919922 None:intergenic 35.0%
! ACTAGGATTAGTGCTAGTAA+TGG + chr7_3:79919980-79919999 None:intergenic 35.0%
! CTCTCTTTTGAATTGTGACT+AGG - chr7_3:79920078-79920097 Msa1128130:intron 35.0%
TTTGAATTGTGACTAGGTTC+TGG - chr7_3:79920084-79920103 Msa1128130:intron 35.0%
TAATGAAAGCTTTCCCTTCA+CGG + chr7_3:79920190-79920209 None:intergenic 35.0%
CAAAGTTCTCATTCCATCTA+AGG + chr7_3:79920360-79920379 None:intergenic 35.0%
TATAGGGGATGAACATATAG+TGG + chr7_3:79920678-79920697 None:intergenic 35.0%
ACATCAATAGGTATGGAACA+AGG - chr7_3:79920914-79920933 Msa1128130:CDS 35.0%
CATCAATAGGTATGGAACAA+GGG - chr7_3:79920915-79920934 Msa1128130:CDS 35.0%
TTGTATAACAAACTACAGCG+AGG + chr7_3:79921144-79921163 None:intergenic 35.0%
TAGAAAGACAGTAGAGTAGT+AGG - chr7_3:79921179-79921198 Msa1128130:CDS 35.0%
AGAAAGACAGTAGAGTAGTA+GGG - chr7_3:79921180-79921199 Msa1128130:CDS 35.0%
AAGCTTGAGTAAACAGATCA+AGG + chr7_3:79921227-79921246 None:intergenic 35.0%
TTCAACAGCAGAAATAACTG+AGG - chr7_3:79921259-79921278 Msa1128130:CDS 35.0%
TGAATCTGATTATAGCCAAG+AGG + chr7_3:79921286-79921305 None:intergenic 35.0%
TCTTGGCTATAATCAGATTC+AGG - chr7_3:79921285-79921304 Msa1128130:CDS 35.0%
CTATAATCAGATTCAGGAAC+TGG - chr7_3:79921291-79921310 Msa1128130:CDS 35.0%
! AGTGTGTGCATTGTTTGTTT+TGG - chr7_3:79921339-79921358 Msa1128130:intron 35.0%
AAAATAAGTCATGTGGGTAC+TGG - chr7_3:79921393-79921412 Msa1128130:intron 35.0%
GCTTACAAATCCAACATCTT+AGG - chr7_3:79921611-79921630 Msa1128130:five_prime_UTR 35.0%
AAGGCCTATCCTTGAACTAA+AGG + chr7_3:79919085-79919104 None:intergenic 40.0%
! GGAATTTAGAATGGAGCTGT+TGG + chr7_3:79919147-79919166 None:intergenic 40.0%
GATGCAAGTAGAAGCTTCAT+TGG + chr7_3:79919195-79919214 None:intergenic 40.0%
!! CAGTGATGATTGTTGGTGAT+GGG + chr7_3:79919471-79919490 None:intergenic 40.0%
! ACAGTGATGATTGTTGGTGA+TGG + chr7_3:79919472-79919491 None:intergenic 40.0%
GAAGGAACAGTGATGATTGT+TGG + chr7_3:79919478-79919497 None:intergenic 40.0%
AGAAACTGTTGTGACAGGAT+TGG + chr7_3:79919503-79919522 None:intergenic 40.0%
ACAGTTTCTCCAACAAATCC+AGG - chr7_3:79919514-79919533 Msa1128130:three_prime_UTR 40.0%
!! GCTGGATTTGTTGGTGATAA+TGG + chr7_3:79919583-79919602 None:intergenic 40.0%
!! GGTGAATTTGCTGGATTTGT+TGG + chr7_3:79919592-79919611 None:intergenic 40.0%
! GCTGTTTGAAGTGTAGATTG+TGG + chr7_3:79919793-79919812 None:intergenic 40.0%
GACTATGCTTGTGGAACAAA+AGG - chr7_3:79919817-79919836 Msa1128130:intron 40.0%
GTAACCAAACCTACCTTAGA+TGG - chr7_3:79920344-79920363 Msa1128130:intron 40.0%
! CATTCCATCTAAGGTAGGTT+TGG + chr7_3:79920351-79920370 None:intergenic 40.0%
! GTTCTCATTCCATCTAAGGT+AGG + chr7_3:79920356-79920375 None:intergenic 40.0%
! CACTTTTCATAGGGTCTGTA+TGG - chr7_3:79920550-79920569 Msa1128130:CDS 40.0%
CACATTAAGCGAGTCTGTTT+GGG + chr7_3:79920850-79920869 None:intergenic 40.0%
ACACATTAAGCGAGTCTGTT+TGG + chr7_3:79920851-79920870 None:intergenic 40.0%
!! GAACAAGGGAGTACTAATCA+TGG - chr7_3:79920929-79920948 Msa1128130:CDS 40.0%
! ACATCATCTCCAGTAGGTTT+TGG - chr7_3:79920986-79921005 Msa1128130:CDS 40.0%
! CATCATCTCCAGTAGGTTTT+GGG - chr7_3:79920987-79921006 Msa1128130:CDS 40.0%
GTTGAATGAGAGGAATCCAA+TGG + chr7_3:79921025-79921044 None:intergenic 40.0%
TTGGATTCCTCTCATTCAAC+TGG - chr7_3:79921025-79921044 Msa1128130:CDS 40.0%
!! CATGGTTCTGGTGACATTAT+TGG - chr7_3:79921069-79921088 Msa1128130:CDS 40.0%
TTATTGGTCAGTGGAAGACT+CGG - chr7_3:79921085-79921104 Msa1128130:CDS 40.0%
AGAGCATGGAAGCTAACTAT+GGG + chr7_3:79921117-79921136 None:intergenic 40.0%
TAGAGCATGGAAGCTAACTA+TGG + chr7_3:79921118-79921137 None:intergenic 40.0%
AGAAATAACTGAGGACCTCT+TGG - chr7_3:79921268-79921287 Msa1128130:CDS 40.0%
TTCAGGAACTGGAGTAGTTT+AGG - chr7_3:79921302-79921321 Msa1128130:CDS 40.0%
GTAAAATCGTAGTGGTCTGA+TGG + chr7_3:79921638-79921657 None:intergenic 40.0%
!! GTTGTGACAGGATTGGTTGA+AGG + chr7_3:79919496-79919515 None:intergenic 45.0%
GTTGGAGAAACTGTTGTGAC+AGG + chr7_3:79919508-79919527 None:intergenic 45.0%
GTAGTAGAAGGAACTGTGAC+AGG + chr7_3:79919547-79919566 None:intergenic 45.0%
!! GTTGGTGATAATGGAACAGC+TGG + chr7_3:79919574-79919593 None:intergenic 45.0%
!! ACAGGTACTGGTGAATTTGC+TGG + chr7_3:79919601-79919620 None:intergenic 45.0%
!! GGTGGTGGATAAGAATTCAC+TGG + chr7_3:79919655-79919674 None:intergenic 45.0%
!! GTTCCTCCTGATAATGGTGA+TGG + chr7_3:79919676-79919695 None:intergenic 45.0%
TCACCATTATCAGGAGGAAC+AGG - chr7_3:79919676-79919695 Msa1128130:CDS 45.0%
GTTCCTGTTCCTCCTGATAA+TGG + chr7_3:79919682-79919701 None:intergenic 45.0%
AGTCCTCCATCTTCTTCTTC+AGG - chr7_3:79919736-79919755 Msa1128130:intron 45.0%
CTACCTCCTGAAGAAGAAGA+TGG + chr7_3:79919745-79919764 None:intergenic 45.0%
AGTGTAGATTGTGGTGTTCC+AGG + chr7_3:79919784-79919803 None:intergenic 45.0%
! ACAGCATTGGACTATGCTTG+TGG - chr7_3:79919808-79919827 Msa1128130:intron 45.0%
GATTGTAACAGCTACCACCT+TGG + chr7_3:79919864-79919883 None:intergenic 45.0%
CAACAAGCTGTGACTTTGGA+GGG - chr7_3:79919947-79919966 Msa1128130:intron 45.0%
! AACAAGCTGTGACTTTGGAG+GGG - chr7_3:79919948-79919967 Msa1128130:intron 45.0%
GAAGGTGACGTTTACCAAAC+TGG + chr7_3:79920634-79920653 None:intergenic 45.0%
! AGATAGCTTGTGGCTCTGTT+TGG + chr7_3:79920730-79920749 None:intergenic 45.0%
AACAGAGCCACAAGCTATCT+TGG - chr7_3:79920730-79920749 Msa1128130:CDS 45.0%
! TAAGCGAGTCTGTTTGGGAT+TGG + chr7_3:79920845-79920864 None:intergenic 45.0%
! ATTCCCATCTTTTGCAGCTC+TGG - chr7_3:79920959-79920978 Msa1128130:CDS 45.0%
GTACCAGAGCTGCAAAAGAT+GGG + chr7_3:79920965-79920984 None:intergenic 45.0%
AGTACCAGAGCTGCAAAAGA+TGG + chr7_3:79920966-79920985 None:intergenic 45.0%
GGTACTACATCATCTCCAGT+AGG - chr7_3:79920980-79920999 Msa1128130:CDS 45.0%
GAATCCAATGGAGAGCTTTG+CGG + chr7_3:79921013-79921032 None:intergenic 45.0%
TCTCAGACCAGTTGAATGAG+AGG + chr7_3:79921035-79921054 None:intergenic 45.0%
AGAACCATGCAGCTTAGCAA+AGG + chr7_3:79921058-79921077 None:intergenic 45.0%
TTTGCTAAGCTGCATGGTTC+TGG - chr7_3:79921057-79921076 Msa1128130:CDS 45.0%
CTGGTGACATTATTGGTCAG+TGG - chr7_3:79921076-79921095 Msa1128130:CDS 45.0%
AGAGTAGTAGGGAGAGTTTG+TGG - chr7_3:79921191-79921210 Msa1128130:CDS 45.0%
! GTCTGATGGACCTAAGATGT+TGG + chr7_3:79921624-79921643 None:intergenic 45.0%
! TGACAGTGACAGCGTTGAAA+TGG + chr7_3:79921724-79921743 None:intergenic 45.0%
! GGTGTTGCACCTGGATTTGT+TGG + chr7_3:79919526-79919545 None:intergenic 50.0%
ACAGCTGGTGGAGTAGTAGA+AGG + chr7_3:79919559-79919578 None:intergenic 50.0%
!! GGTGATAATGGAACAGCTGG+TGG + chr7_3:79919571-79919590 None:intergenic 50.0%
!! GTTGGTGGTGTAACAGGTAC+TGG + chr7_3:79919613-79919632 None:intergenic 50.0%
!! GGAACTGTTGGTGGTGTAAC+AGG + chr7_3:79919619-79919638 None:intergenic 50.0%
GTTACACCACCAACAGTTCC+AGG - chr7_3:79919619-79919638 Msa1128130:CDS 50.0%
GTTGTTCCTCCTGGAACTGT+TGG + chr7_3:79919631-79919650 None:intergenic 50.0%
!! TTCACTGGTGTTGTTCCTCC+TGG + chr7_3:79919640-79919659 None:intergenic 50.0%
!! CCTGATAATGGTGATGGTGG+TGG + chr7_3:79919670-79919689 None:intergenic 50.0%
CCACCACCATCACCATTATC+AGG - chr7_3:79919667-79919686 Msa1128130:CDS 50.0%
!! CCTCCTGATAATGGTGATGG+TGG + chr7_3:79919673-79919692 None:intergenic 50.0%
CCACCATCACCATTATCAGG+AGG - chr7_3:79919670-79919689 Msa1128130:CDS 50.0%
GAAGGTGGAGGATTTGTGAC+AGG + chr7_3:79919709-79919728 None:intergenic 50.0%
GATGGAGGACTTGTGCTTGA+AGG + chr7_3:79919727-79919746 None:intergenic 50.0%
CCTCCTGAAGAAGAAGATGG+AGG + chr7_3:79919742-79919761 None:intergenic 50.0%
CCTCCATCTTCTTCTTCAGG+AGG - chr7_3:79919739-79919758 Msa1128130:intron 50.0%
CTTCTTCTTCAGGAGGTAGC+TGG - chr7_3:79919746-79919765 Msa1128130:intron 50.0%
!! AAGTCACAGCTTGTTGCAGC+AGG + chr7_3:79919943-79919962 None:intergenic 50.0%
GCTGCAACAAGCTGTGACTT+TGG - chr7_3:79919943-79919962 Msa1128130:intron 50.0%
GCAACAAGCTGTGACTTTGG+AGG - chr7_3:79919946-79919965 Msa1128130:intron 50.0%
TGAAGCTGATGGGAAGATGC+AGG + chr7_3:79920112-79920131 None:intergenic 50.0%
TGCATCTTCCCATCAGCTTC+AGG - chr7_3:79920111-79920130 Msa1128130:intron 50.0%
ATCTTCCCATCAGCTTCAGG+AGG - chr7_3:79920114-79920133 Msa1128130:intron 50.0%
GGGTAAGTGAGAACCGTGAA+GGG - chr7_3:79920174-79920193 Msa1128130:intron 50.0%
GCTGATAAGCTCGTGTGAGA+AGG + chr7_3:79920652-79920671 None:intergenic 50.0%
AAGGGCTCCAAGATAGCTTG+TGG + chr7_3:79920740-79920759 None:intergenic 50.0%
GAGACCTTTGCTAAGCTGCA+TGG - chr7_3:79921051-79921070 Msa1128130:CDS 50.0%
TACAGCGAGGAGATAGAGCA+TGG + chr7_3:79921131-79921150 None:intergenic 50.0%
! ACTGTGACAGGTGTTGCACC+TGG + chr7_3:79919535-79919554 None:intergenic 55.0%
ACACCACCAACAGTTCCAGG+AGG - chr7_3:79919622-79919641 Msa1128130:CDS 55.0%
GTTCCTCCTGGAACTGTTGG+TGG + chr7_3:79919628-79919647 None:intergenic 55.0%
GGACTTGTGCTTGAAGGTGG+AGG + chr7_3:79919721-79919740 None:intergenic 55.0%
GGAGGACTTGTGCTTGAAGG+TGG + chr7_3:79919724-79919743 None:intergenic 55.0%
TTCAGGAGGTAGCTGGTGTG+TGG - chr7_3:79919753-79919772 Msa1128130:intron 55.0%
AGCTGGTGTGTGGCTAAACC+TGG - chr7_3:79919763-79919782 Msa1128130:intron 55.0%
TTCCCATCAGCTTCAGGAGG+AGG - chr7_3:79920117-79920136 Msa1128130:intron 55.0%
CTCCTCCTCCTGAAGCTGAT+GGG + chr7_3:79920122-79920141 None:intergenic 55.0%
CGGGTAAGTGAGAACCGTGA+AGG - chr7_3:79920173-79920192 Msa1128130:intron 55.0%
CTTTGCGGCCCAAAACCTAC+TGG + chr7_3:79920998-79921017 None:intergenic 55.0%
GCTCCTCCTCCTGAAGCTGA+TGG + chr7_3:79920123-79920142 None:intergenic 60.0%
TCAGCTTCAGGAGGAGGAGC+TGG - chr7_3:79920123-79920142 Msa1128130:intron 60.0%
CACGGTTCTCACTTACCCGC+CGG + chr7_3:79920172-79920191 None:intergenic 60.0%
TGGGCCGCAAAGCTCTCCAT+TGG - chr7_3:79921006-79921025 Msa1128130:CDS 60.0%
GGCACAGGCACAGGCACATC+CGG - chr7_3:79920150-79920169 Msa1128130:intron 65.0%
ACAGGCACAGGCACATCCGG+CGG - chr7_3:79920153-79920172 Msa1128130:intron 65.0%
TCAGGAGGAGGAGCTGGCGC+AGG - chr7_3:79920129-79920148 Msa1128130:intron 70.0%
CAGGCACAGGCACATCCGGC+GGG - chr7_3:79920154-79920173 Msa1128130:intron 70.0%
GGAGGAGCTGGCGCAGGCAC+AGG - chr7_3:79920135-79920154 Msa1128130:intron 75.0%
GCTGGCGCAGGCACAGGCAC+AGG - chr7_3:79920141-79920160 Msa1128130:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79918892 79921803 79918892 ID=Msa1128130;Name=Msa1128130
chr7_3 mRNA 79918892 79921803 79918892 ID=Msa1128130-mRNA-1;Parent=Msa1128130;Name=Msa1128130-mRNA-1;_AED=0.08;_eAED=0.08;_QI=296|1|1|1|0.75|0.6|5|654|310
chr7_3 exon 79918892 79919175 79918892 ID=Msa1128130-mRNA-1:exon:22725;Parent=Msa1128130-mRNA-1
chr7_3 exon 79919205 79919719 79919205 ID=Msa1128130-mRNA-1:exon:22724;Parent=Msa1128130-mRNA-1
chr7_3 exon 79920520 79920595 79920520 ID=Msa1128130-mRNA-1:exon:22723;Parent=Msa1128130-mRNA-1
chr7_3 exon 79920698 79921348 79920698 ID=Msa1128130-mRNA-1:exon:22722;Parent=Msa1128130-mRNA-1
chr7_3 exon 79921447 79921803 79921447 ID=Msa1128130-mRNA-1:exon:22721;Parent=Msa1128130-mRNA-1
chr7_3 five_prime_UTR 79921508 79921803 79921508 ID=Msa1128130-mRNA-1:five_prime_utr;Parent=Msa1128130-mRNA-1
chr7_3 CDS 79921447 79921507 79921447 ID=Msa1128130-mRNA-1:cds;Parent=Msa1128130-mRNA-1
chr7_3 CDS 79920698 79921348 79920698 ID=Msa1128130-mRNA-1:cds;Parent=Msa1128130-mRNA-1
chr7_3 CDS 79920520 79920595 79920520 ID=Msa1128130-mRNA-1:cds;Parent=Msa1128130-mRNA-1
chr7_3 CDS 79919575 79919719 79919575 ID=Msa1128130-mRNA-1:cds;Parent=Msa1128130-mRNA-1
chr7_3 three_prime_UTR 79919205 79919574 79919205 ID=Msa1128130-mRNA-1:three_prime_utr;Parent=Msa1128130-mRNA-1
chr7_3 three_prime_UTR 79918892 79919175 79918892 ID=Msa1128130-mRNA-1:three_prime_utr;Parent=Msa1128130-mRNA-1
Gene Sequence

>Msa1128130

ATGGCCAATGAAGCTTCTACTTGCATCTTGTTCCTATCTTTTCTCATTTTCTTCTGTTCTGGAACCAATGCATTTTCAACTATTTCTGGAGCAAGATTCCTTCCAAAAAGCAAGATCTCAAAGTCTCAGATTCAGTTTCTTGTAACAGATCACAAGATTTGGAGAAAACTTCTAGACACAAACCCATCACCAACAATCATCACTGTTCCTTCAACCAATCCTGTCACAACAGTTTCTCCAACAAATCCAGGTGCAACACCTGTCACAGTTCCTTCTACTACTCCACCAGCTGTTCCATTATCACCAACAAATCCAGCAAATTCACCAGTACCTGTTACACCACCAACAGTTCCAGGAGGAACAACACCAGTGAATTCTTATCCACCACCATCACCATTATCAGGAGGAACAGGAACTGTTCCTGTCACAAATCCTCCACCTTCAAGCACAAGTCCTCCATCTTCTTCTTCAGGAGGTAGCTGGTGTGTGGCTAAACCTGGAACACCACAATCTACACTTCAAACAGCATTGGACTATGCTTGTGGAACAAAAGGAACTGATTGTTCACAAATAAACCAAGGTGGTAGCTGTTACAATCCAAATTCACTTCAAAACCATGCTTCTTTTGCATTCAACAGCTACTATGTAAAGAATCCTGCTGCAACAAGCTGTGACTTTGGAGGGGTTGCTACCATTACTAGCACTAATCCTAGTTCTGGTACCTGCATCTTCCCATCAGCTTCAGGAGGAGGAGCTGGCGCAGGCACAGGCACAGGCACATCCGGCGGCTCTGGTACTACATCATCTCCAGTAGGTTTTGGGCCGCAAAGCTCTCCATTGGATTCCTCTCATTCAACTGGTCTGAGACCTTTGCTAAGCTGCATGGTTCTGGTGACATTATTGGTCAGTGGAAGACTCGGCATGAGCCCATAG
Protein sequence

>Msa1128130

MANEASTCILFLSFLIFFCSGTNAFSTISGARFLPKSKISKSQIQFLVTDHKIWRKLLDTNPSPTIITVPSTNPVTTVSPTNPGATPVTVPSTTPPAVPLSPTNPANSPVPVTPPTVPGGTTPVNSYPPPSPLSGGTGTVPVTNPPPSSTSPPSSSSGGSWCVAKPGTPQSTLQTALDYACGTKGTDCSQINQGGSCYNPNSLQNHASFAFNSYYVKNPAATSCDFGGVATITSTNPSSGTCIFPSASGGGAGAGTGTGTSGGSGTTSSPVGFGPQSSPLDSSHSTGLRPLLSCMVLVTLLVSGRLGMSP*