AlfalfaGEDB | Msa0118050

M. sativa cultivar zhongmu-4 / Msa0118050

KEGG: K15255
GO: -
PFAM: PF05970.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118050	XP_024630708.1	86.473	207	28	0	1	207	260	466	6.00e-126	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118050	sp\|Q0R4F1\|PIF1_XENLA	30.769	169	100	4	30	190	443	602	4.03e-15	76.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118050	A0A6A5NDQ1	71.498	207	58	1	1	207	163	368	1.74e-102	310

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0068630	Msa0118050	0.805788	1.127407e-49	-8.615850e-47
Msa0118050	Msa0118060	0.838792	2.329601e-57	-8.615850e-47
Msa0118050	Msa0232850	0.820205	7.755804e-53	-8.615850e-47
Msa0118050	Msa0267000	0.821780	3.365304e-53	-8.615850e-47
Msa0118050	Msa0267010	0.806963	6.371108e-50	-8.615850e-47
Msa0118050	Msa0452900	0.820512	6.595501e-53	-8.615850e-47
Msa0118050	Msa0548060	0.833086	6.527393e-56	-8.615850e-47
Msa0118050	Msa0732710	0.811502	6.779210e-51	-8.615850e-47
Msa0118050	Msa0743810	0.804471	2.125859e-49	-8.615850e-47
Msa0118050	Msa0745060	0.836257	1.040164e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118050	MtrunA17_Chr3g0101861	71.014	207	59	1	1	207	260	465	1.33e-103	306
Msa0118050	MtrunA17_Chr7g0248821	60.101	198	78	1	10	207	1	197	7.36e-79	234
Msa0118050	MtrunA17_Chr1g0173691	56.522	207	89	1	1	207	166	371	1.60e-75	231
Msa0118050	MtrunA17_Chr1g0206511	56.500	200	84	2	9	207	1	198	1.14e-74	223
Msa0118050	MtrunA17_Chr3g0133361	52.174	207	98	1	1	207	88	293	2.15e-74	226
Msa0118050	MtrunA17_Chr7g0269671	57.485	167	68	2	2	167	168	332	3.52e-58	186
Msa0118050	MtrunA17_Chr6g0472831	46.061	165	88	1	1	165	88	251	1.05e-48	159
Msa0118050	MtrunA17_Chr3g0100401	50.000	128	63	1	9	136	1	127	3.24e-38	128
Msa0118050	MtrunA17_Chr3g0139511	61.111	72	28	0	136	207	109	180	1.12e-22	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0118050	AT3G51690.1	46.377	207	105	3	2	207	130	331	2.79e-56	181
Msa0118050	AT5G28780.1	48.309	207	102	3	2	207	128	330	1.10e-54	177
Msa0118050	AT3G51700.1	44.390	205	111	2	1	204	130	332	2.31e-51	169

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Find 35 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAATATTGACCAATCAGA+GGG	0.619546	1_3:-40313416	Msa0118050:CDS
AGGGAGACCAGAAGTTCTTA+GGG	0.484118	1_3:+40313484	None:intergenic
ATATTTCTCAACAGCATCAC+AGG	0.524778	1_3:+40313431	None:intergenic
ATGACTAGTAATAAATCTCT+AGG	0.545087	1_3:-40313209	Msa0118050:CDS
ATTGCATAAGAGACTATAAT+TGG	0.227481	1_3:+40313230	None:intergenic
CAATCAGAGGGACTCTGCAA+TGG	0.613107	1_3:-40313404	Msa0118050:CDS
CACAGAATTAAGCATAAAGT+AGG	0.576520	1_3:-40313458	Msa0118050:CDS
CAGACTGATCATTACTAGAA+TGG	0.504238	1_3:-40313378	Msa0118050:CDS
CATTCTAGTAATGATCAGTC+TGG	0.545198	1_3:+40313379	None:intergenic
CATTGCAGAGTCCCTCTGAT+TGG	0.499154	1_3:+40313405	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGCTTAATTCTGTGGTTA+GGG	+	chr1_3:40313294-40313313	None:intergenic	30.0%
TTATGCTTAATTCTGTGGTT+AGG	+	chr1_3:40313295-40313314	None:intergenic	30.0%
CTACTTTATGCTTAATTCTG+TGG	+	chr1_3:40313300-40313319	None:intergenic	30.0%
CACAGAATTAAGCATAAAGT+AGG	-	chr1_3:40313298-40313317	Msa0118050:CDS	30.0%
AGAAATATTGACCAATCAGA+GGG	-	chr1_3:40313340-40313359	Msa0118050:CDS	30.0%
TTGACATAGCTACATAAAGT+TGG	+	chr1_3:40313627-40313646	None:intergenic	30.0%
TATGTCAAGAGTTAAAAGCA+AGG	-	chr1_3:40313639-40313658	Msa0118050:intron	30.0%
TTTGATTCACGATTCTAACA+AGG	-	chr1_3:40313675-40313694	Msa0118050:intron	30.0%
TTCAGGAGTTAGAGATTCAA+AGG	+	chr1_3:40313242-40313261	None:intergenic	35.0%
CTTAGGGAACTTAGAAATTC+AGG	+	chr1_3:40313259-40313278	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	40313025	40313753	40313025	ID=Msa0118050;Name=Msa0118050
chr1_3	mRNA	40313025	40313753	40313025	ID=Msa0118050-mRNA-1;Parent=Msa0118050;Name=Msa0118050-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0\|0\|0\|1\|1\|1\|2\|0\|207
chr1_3	exon	40313711	40313753	40313711	ID=Msa0118050-mRNA-1:exon:12338;Parent=Msa0118050-mRNA-1
chr1_3	exon	40313025	40313605	40313025	ID=Msa0118050-mRNA-1:exon:12337;Parent=Msa0118050-mRNA-1
chr1_3	CDS	40313711	40313753	40313711	ID=Msa0118050-mRNA-1:cds;Parent=Msa0118050-mRNA-1
chr1_3	CDS	40313025	40313605	40313025	ID=Msa0118050-mRNA-1:cds;Parent=Msa0118050-mRNA-1

Gene Sequence

>Msa0118050

ATGGTTGAAGAAATTAATGACTATGTACTCTCATTGATTGAAGGGGAAGAAAGGGAATATCTAAGTTCTGATTCTATTGATAGATCACAAATCAATGATGAATGTCAATCCTTTGAATCTCTAACTCCTGAATTTCTAAGTTCCCTAAGAACTTCTGGTCTCCCTAACCACAGAATTAAGCATAAAGTAGGTACTCCTGTGATGCTGTTGAGAAATATTGACCAATCAGAGGGACTCTGCAATGGTACCAGACTGATCATTACTAGAATGGTTGACCATGTCCTTGAAGCCAAAATCATCTCAGGGAAAAACATAGGAAATATGACTTACATTCTAAGGTTGGACATGTCTCATTCTCAATCACCTTGGCCATTTAAGCTTATAAGAAGACAATTCCCAATTATAGTCTCTTATGCAATGACTAGTAATAAATCTCTAGGTCAGTCTCTAGATAGTGTTGGTTTATATCTTCCTAGAGCTATGTTTAGTCATGGCCAACTTTATGTAGCTATGTCAAGAGTTAAAAGCAAGGCAGGTTTGAAAATTTTGATTCACGATTCTAACAAGGTTGAGCTATCAACTACCATGAATGTCGTCTACAAAGAAGTATTTGAAAATCTATAA

Protein sequence

>Msa0118050

MVEEINDYVLSLIEGEEREYLSSDSIDRSQINDECQSFESLTPEFLSSLRTSGLPNHRIKHKVGTPVMLLRNIDQSEGLCNGTRLIITRMVDHVLEAKIISGKNIGNMTYILRLDMSHSQSPWPFKLIRRQFPIIVSYAMTSNKSLGQSLDSVGLYLPRAMFSHGQLYVAMSRVKSKAGLKILIHDSNKVELSTTMNVVYKEVFENL*