AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416850 MtrunA17_Chr1g0207981 96.881 481 15 0 1 481 1 481 0.0 964
Msa1416850 MtrunA17_Chr4g0053501 46.072 471 238 4 9 474 7 466 4.58e-156 452
Msa1416850 MtrunA17_Chr4g0053321 46.497 471 236 4 9 474 22 481 5.88e-146 427
Msa1416850 MtrunA17_Chr5g0401721 43.220 472 257 8 9 473 4 471 3.39e-133 393
Msa1416850 MtrunA17_Chr3g0098111 41.300 477 249 12 12 472 8 469 1.03e-117 354
Msa1416850 MtrunA17_Chr1g0161351 41.561 474 254 11 11 472 35 497 6.67e-114 345
Msa1416850 MtrunA17_Chr6g0464841 38.745 462 257 8 13 469 11 451 1.57e-113 342
Msa1416850 MtrunA17_Chr1g0207971 40.632 475 257 9 1 472 1 453 3.08e-113 342
Msa1416850 MtrunA17_Chr6g0464861 39.706 476 254 11 1 469 1 450 5.61e-113 341
Msa1416850 MtrunA17_Chr6g0464871 39.394 462 254 9 13 469 23 463 2.64e-112 340
Msa1416850 MtrunA17_Chr6g0464881 38.994 477 262 11 5 474 2 456 2.73e-112 339
Msa1416850 MtrunA17_Chr8g0377921 38.285 478 259 13 14 473 5 464 1.74e-110 335
Msa1416850 MtrunA17_Chr7g0249981 38.689 473 266 9 4 473 16 467 4.64e-110 335
Msa1416850 MtrunA17_Chr1g0207861 40.326 491 257 14 13 480 8 485 1.00e-109 333
Msa1416850 MtrunA17_Chr8g0365811 39.076 476 269 11 9 472 491 957 1.16e-108 344
Msa1416850 MtrunA17_Chr8g0365811 38.901 473 272 8 12 472 8 475 1.51e-100 323
Msa1416850 MtrunA17_Chr5g0393591 38.889 468 239 8 13 477 17 440 2.67e-108 329
Msa1416850 MtrunA17_Chr6g0464921 36.345 476 274 10 4 472 2 455 1.65e-105 322
Msa1416850 MtrunA17_Chr5g0414331 36.975 476 269 10 12 481 12 462 1.29e-104 320
Msa1416850 MtrunA17_Chr7g0250001 39.019 469 256 11 11 473 4 448 7.91e-104 317
Msa1416850 MtrunA17_Chr8g0377941 37.759 482 257 14 14 476 8 465 3.11e-103 316
Msa1416850 MtrunA17_Chr1g0207951 40.173 463 260 7 12 472 123 570 1.63e-102 330
Msa1416850 MtrunA17_Chr1g0207951 38.055 473 262 12 12 472 655 1108 2.77e-94 308
Msa1416850 MtrunA17_Chr5g0414321 36.461 469 265 11 12 473 10 452 1.54e-100 309
Msa1416850 MtrunA17_Chr8g0380531 38.034 468 264 9 12 472 9 457 5.42e-100 308
Msa1416850 MtrunA17_Chr3g0121991 36.042 480 274 12 13 472 79 545 1.11e-97 305
Msa1416850 MtrunA17_Chr3g0122001 35.744 484 270 12 13 472 486 952 2.37e-97 314
Msa1416850 MtrunA17_Chr3g0122001 35.135 481 278 13 13 472 6 473 2.99e-94 305
Msa1416850 MtrunA17_Chr1g0207831 37.238 478 280 9 12 481 7 472 8.30e-97 300
Msa1416850 MtrunA17_Chr7g0249931 36.887 469 266 11 12 473 39 484 1.94e-92 289
Msa1416850 MtrunA17_Chr1g0207931 35.729 473 226 12 12 472 91 497 2.46e-86 274
Msa1416850 MtrunA17_Chr6g0454301 33.680 481 289 14 13 474 263 732 4.07e-79 261
Msa1416850 MtrunA17_Chr6g0454301 35.470 234 141 4 242 471 1 228 1.92e-46 172
Msa1416850 MtrunA17_Chr6g0454141 31.211 487 295 9 13 474 10 481 2.32e-78 252
Msa1416850 MtrunA17_Chr3g0078841 31.902 489 287 12 13 474 10 479 2.37e-78 252
Msa1416850 MtrunA17_Chr6g0454191 31.579 494 285 13 13 474 10 482 4.27e-78 252
Msa1416850 MtrunA17_Chr6g0454341 31.034 493 286 13 13 474 10 479 8.81e-77 248
Msa1416850 MtrunA17_Chr8g0336331 31.902 489 286 13 13 474 10 478 2.73e-76 247
Msa1416850 MtrunA17_Chr6g0453961 30.661 499 291 12 9 474 15 491 5.59e-76 246
Msa1416850 MtrunA17_Chr5g0426431 32.777 479 294 10 13 474 12 479 5.84e-76 246
Msa1416850 MtrunA17_Chr6g0454401 31.526 498 280 13 13 474 10 482 1.96e-75 245
Msa1416850 MtrunA17_Chr3g0092641 32.992 488 281 14 13 474 12 479 4.66e-75 244
Msa1416850 MtrunA17_Chr6g0454181 31.138 501 289 14 6 474 5 481 1.45e-74 243
Msa1416850 MtrunA17_Chr6g0454331 30.285 492 295 10 13 474 7 480 3.09e-74 241
Msa1416850 MtrunA17_Chr8g0359821 30.769 494 286 10 13 474 10 479 4.33e-74 241
Msa1416850 MtrunA17_Chr5g0423981 31.435 474 286 11 8 474 5 446 1.75e-73 239
Msa1416850 MtrunA17_Chr6g0454361 31.537 501 297 14 1 474 1 482 3.36e-73 239
Msa1416850 MtrunA17_Chr6g0454261 30.390 487 299 11 13 474 10 481 1.08e-72 238
Msa1416850 MtrunA17_Chr7g0217881 32.211 475 288 11 13 474 10 463 2.50e-72 236
Msa1416850 MtrunA17_Chr2g0278711 30.769 481 301 12 13 474 11 478 3.66e-72 236
Msa1416850 MtrunA17_Chr4g0050341 31.643 493 294 15 5 469 10 487 5.93e-72 236
Msa1416850 MtrunA17_Chr6g0453951 30.832 493 289 12 13 474 57 528 6.14e-72 237
Msa1416850 MtrunA17_Chr6g0454291 31.417 487 294 11 13 474 7 478 5.89e-70 230
Msa1416850 MtrunA17_Chr6g0452771 31.000 500 291 12 6 474 5 481 8.67e-70 230
Msa1416850 MtrunA17_Chr6g0454321 31.613 465 288 14 13 458 10 463 5.75e-69 232
Msa1416850 MtrunA17_Chr6g0454201 31.055 512 285 13 1 474 1 482 2.89e-68 226
Msa1416850 MtrunA17_Chr7g0249961 45.455 242 124 4 235 473 24 260 8.76e-68 218
Msa1416850 MtrunA17_Chr6g0454211 30.801 487 297 10 13 474 297 768 1.38e-67 231
Msa1416850 MtrunA17_Chr6g0454211 32.536 209 104 5 182 386 61 236 5.56e-28 117
Msa1416850 MtrunA17_Chr6g0454151 30.992 484 298 13 13 474 10 479 9.19e-67 222
Msa1416850 MtrunA17_Chr3g0118691 29.412 493 312 12 3 473 5 483 1.17e-66 222
Msa1416850 MtrunA17_Chr3g0118671 28.980 490 302 13 11 473 4 474 7.03e-66 219
Msa1416850 MtrunA17_Chr6g0454121 28.457 499 304 11 6 474 5 480 5.35e-65 217
Msa1416850 MtrunA17_Chr3g0118711 29.779 497 297 15 6 473 8 481 7.32e-65 217
Msa1416850 MtrunA17_Chr6g0454351 28.947 494 280 13 13 474 12 466 9.00e-65 216
Msa1416850 MtrunA17_Chr3g0118661 31.753 485 288 16 13 472 13 479 3.38e-64 215
Msa1416850 MtrunA17_Chr6g0454131 28.884 502 304 11 6 477 5 483 7.13e-64 214
Msa1416850 MtrunA17_Chr3g0112771 31.027 477 275 13 14 473 13 452 1.92e-63 213
Msa1416850 MtrunA17_Chr7g0218821 28.602 465 304 7 13 470 5 448 1.98e-63 212
Msa1416850 MtrunA17_Chr7g0218811 28.726 463 295 8 13 470 15 447 9.46e-63 211
Msa1416850 MtrunA17_Chr7g0218841 28.694 467 288 10 13 469 6 437 1.51e-60 204
Msa1416850 MtrunA17_Chr7g0218831 29.004 462 292 9 13 469 6 436 1.80e-60 204
Msa1416850 MtrunA17_Chr3g0118771 28.195 493 298 13 13 473 21 489 5.19e-60 204
Msa1416850 MtrunA17_Chr3g0118701 27.490 502 310 13 3 473 5 483 1.10e-59 203
Msa1416850 MtrunA17_Chr5g0412111 30.608 477 294 13 13 472 5 461 1.15e-59 203
Msa1416850 MtrunA17_Chr6g0454271 33.677 291 183 4 188 474 4 288 4.69e-59 196
Msa1416850 MtrunA17_Chr7g0218791 30.000 470 285 17 13 470 5 442 6.11e-59 200
Msa1416850 MtrunA17_Chr6g0454221 40.426 235 129 4 242 471 1 229 4.98e-58 194
Msa1416850 MtrunA17_Chr6g0454251 31.078 399 239 10 13 386 7 394 7.04e-58 196
Msa1416850 MtrunA17_Chr4g0044511 30.266 489 292 16 11 472 38 504 1.83e-57 198
Msa1416850 MtrunA17_Chr7g0243631 28.571 504 310 15 1 472 1 486 3.72e-57 197
Msa1416850 MtrunA17_Chr5g0426401 33.557 298 188 3 182 474 20 312 1.08e-56 191
Msa1416850 MtrunA17_Chr5g0412101 31.697 489 287 18 7 472 6 470 4.38e-55 191
Msa1416850 MtrunA17_Chr5g0431441 29.363 487 280 16 13 473 18 466 1.23e-54 189
Msa1416850 MtrunA17_Chr3g0118721 32.646 291 181 6 191 473 7 290 2.21e-53 181
Msa1416850 MtrunA17_Chr5g0419771 29.622 503 289 17 12 473 35 513 8.11e-53 186
Msa1416850 MtrunA17_Chr3g0112761 29.449 472 293 15 13 473 8 450 1.03e-52 184
Msa1416850 MtrunA17_Chr7g0265141 29.065 492 304 15 13 473 9 486 1.17e-52 184
Msa1416850 MtrunA17_Chr5g0412131 31.092 476 294 16 13 472 12 469 1.25e-52 184
Msa1416850 MtrunA17_Chr7g0243871 28.571 483 307 15 11 472 7 472 1.58e-52 184
Msa1416850 MtrunA17_Chr8g0366391 28.488 516 297 19 5 480 2 485 4.08e-52 183
Msa1416850 MtrunA17_Chr3g0106231 28.481 474 295 14 13 477 18 456 1.98e-51 181
Msa1416850 MtrunA17_Chr7g0243861 28.630 489 309 15 11 472 12 487 3.57e-51 181
Msa1416850 MtrunA17_Chr4g0032331 28.998 469 281 16 22 473 17 450 5.02e-51 179
Msa1416850 MtrunA17_Chr7g0232311 33.239 355 202 10 135 469 121 460 5.45e-51 180
Msa1416850 MtrunA17_Chr5g0431401 27.883 477 289 14 13 472 10 448 1.75e-50 178
Msa1416850 MtrunA17_Chr6g0462571 30.682 352 212 10 135 470 124 459 3.35e-50 178
Msa1416850 MtrunA17_Chr6g0462531 28.571 469 294 14 14 461 5 453 5.90e-50 177
Msa1416850 MtrunA17_Chr6g0454171 34.545 275 150 6 208 474 59 311 7.25e-50 172
Msa1416850 MtrunA17_Chr5g0431361 28.390 472 296 15 13 472 12 453 8.32e-50 176
Msa1416850 MtrunA17_Chr8g0336691 34.232 371 202 11 123 468 1022 1375 1.15e-49 182
Msa1416850 MtrunA17_Chr8g0336691 29.339 484 289 17 12 468 12 469 1.42e-46 174
Msa1416850 MtrunA17_Chr8g0336691 38.645 251 125 7 223 468 682 908 1.53e-42 162
Msa1416850 MtrunA17_Chr8g0336651 30.498 482 286 15 12 467 780 1238 1.16e-49 182
Msa1416850 MtrunA17_Chr8g0336651 27.140 479 304 13 12 468 5 460 3.84e-43 163
Msa1416850 MtrunA17_Chr8g0336651 35.766 274 140 7 203 468 525 770 1.10e-40 156
Msa1416850 MtrunA17_Chr7g0250021 33.642 324 185 10 12 326 11 313 1.53e-49 172
Msa1416850 MtrunA17_Chr8g0336741 30.488 492 273 17 11 468 11 467 1.59e-49 176
Msa1416850 MtrunA17_Chr7g0275681 28.400 500 289 18 13 473 12 481 2.23e-49 176
Msa1416850 MtrunA17_Chr5g0431421 27.907 473 296 14 13 473 10 449 2.67e-49 175
Msa1416850 MtrunA17_Chr6g0462551 26.446 484 289 13 21 470 12 462 6.30e-49 174
Msa1416850 MtrunA17_Chr4g0066151 28.221 489 297 12 14 474 19 481 7.19e-49 174
Msa1416850 MtrunA17_Chr7g0243931 27.403 489 315 15 11 472 15 490 9.00e-49 174
Msa1416850 MtrunA17_Chr7g0232331 27.755 490 295 19 13 472 6 466 1.66e-48 173
Msa1416850 MtrunA17_Chr4g0066221 28.427 496 311 13 4 472 2 480 1.80e-48 173
Msa1416850 MtrunA17_Chr7g0243771 28.340 494 306 16 8 472 1 475 1.84e-48 173
Msa1416850 MtrunA17_Chr5g0442561 26.613 496 302 14 13 473 5 473 4.99e-48 172
Msa1416850 MtrunA17_Chr8g0347281 33.152 368 206 12 120 465 116 465 5.28e-48 172
Msa1416850 MtrunA17_Chr8g0336731 30.623 369 218 8 127 469 131 487 5.33e-48 172
Msa1416850 MtrunA17_Chr6g0462541 26.947 475 311 12 14 470 5 461 7.23e-48 172
Msa1416850 MtrunA17_Chr7g0243951 28.370 497 313 15 4 472 2 483 9.49e-48 172
Msa1416850 MtrunA17_Chr8g0339461 30.585 376 221 12 123 472 110 471 1.18e-47 171
Msa1416850 MtrunA17_Chr5g0431371 28.118 473 293 14 13 472 10 448 1.25e-47 170
Msa1416850 MtrunA17_Chr7g0232401 29.834 362 228 7 123 468 112 463 1.58e-47 171
Msa1416850 MtrunA17_Chr7g0243801 28.163 490 306 16 11 472 5 476 2.15e-47 171
Msa1416850 MtrunA17_Chr1g0153451 29.745 353 213 9 137 469 123 460 2.87e-47 170
Msa1416850 MtrunA17_Chr8g0373301 30.081 369 217 10 123 468 112 462 4.78e-47 169
Msa1416850 MtrunA17_Chr2g0307961 27.869 488 320 11 1 474 1 470 6.99e-47 169
Msa1416850 MtrunA17_Chr4g0014061 29.293 495 293 19 6 470 3 470 7.24e-47 169
Msa1416850 MtrunA17_Chr8g0347271 31.818 374 203 11 120 465 117 466 9.81e-47 169
Msa1416850 MtrunA17_Chr7g0265041 28.455 492 308 14 13 473 11 489 1.05e-46 169
Msa1416850 MtrunA17_Chr7g0243681 27.108 498 300 17 11 472 9 479 1.09e-46 169
Msa1416850 MtrunA17_Chr4g0066261 28.514 498 309 16 4 472 2 481 1.53e-46 168
Msa1416850 MtrunA17_Chr7g0232411 32.508 323 181 9 169 471 159 464 1.96e-46 167
Msa1416850 MtrunA17_Chr7g0232391 27.310 487 300 12 12 471 5 464 2.15e-46 167
Msa1416850 MtrunA17_Chr8g0361371 34.768 302 164 7 188 469 179 467 2.42e-46 167
Msa1416850 MtrunA17_Chr4g0044501 28.041 485 307 17 12 472 9 475 2.44e-46 167
Msa1416850 MtrunA17_Chr4g0011051 28.797 507 298 20 8 473 4 488 2.44e-46 168
Msa1416850 MtrunA17_Chr5g0442581 26.453 499 307 15 14 476 6 480 3.10e-46 168
Msa1416850 MtrunA17_Chr8g0355011 28.453 362 205 5 123 474 46 363 3.95e-46 164
Msa1416850 MtrunA17_Chr7g0243781 25.620 484 323 14 11 472 7 475 4.06e-46 167
Msa1416850 MtrunA17_Chr6g0459311 31.507 365 214 11 122 465 115 464 4.96e-46 166
Msa1416850 MtrunA17_Chr4g0072761 28.330 473 293 13 12 472 14 452 5.15e-46 166
Msa1416850 MtrunA17_Chr4g0060511 25.904 498 314 15 11 472 9 487 7.95e-46 166
Msa1416850 MtrunA17_Chr7g0265051 28.599 514 297 23 1 473 1 485 9.20e-46 166
Msa1416850 MtrunA17_Chr7g0275511 27.218 496 300 15 1 465 3 468 1.25e-45 166
Msa1416850 MtrunA17_Chr5g0432731 32.566 304 184 8 179 473 6 297 2.23e-45 160
Msa1416850 MtrunA17_Chr7g0232341 26.380 489 303 17 13 472 6 466 2.26e-45 165
Msa1416850 MtrunA17_Chr7g0235051 26.860 484 291 14 11 471 9 452 2.29e-45 164
Msa1416850 MtrunA17_Chr8g0334851 30.871 379 200 13 120 463 109 460 3.83e-45 164
Msa1416850 MtrunA17_Chr4g0042891 28.513 491 288 18 12 471 6 464 3.96e-45 164
Msa1416850 MtrunA17_Chr7g0265151 27.455 499 307 15 10 473 6 484 4.50e-45 164
Msa1416850 MtrunA17_Chr8g0339451 30.563 373 225 10 123 472 102 463 4.56e-45 164
Msa1416850 MtrunA17_Chr5g0448521 28.316 392 229 10 116 473 95 468 1.28e-44 162
Msa1416850 MtrunA17_Chr8g0374931 27.565 497 315 12 4 472 2 481 1.35e-44 163
Msa1416850 MtrunA17_Chr8g0339441 40.376 213 111 4 276 472 217 429 1.63e-44 161
Msa1416850 MtrunA17_Chr7g0265101 28.762 525 305 23 1 480 1 501 1.91e-44 163
Msa1416850 MtrunA17_Chr3g0106251 33.962 265 155 5 219 477 48 298 2.38e-44 158
Msa1416850 MtrunA17_Chr3g0118751 26.392 485 288 13 13 473 6 445 2.38e-44 161
Msa1416850 MtrunA17_Chr6g0463851 26.465 495 324 12 4 472 2 482 5.60e-44 161
Msa1416850 MtrunA17_Chr4g0066281 28.364 483 289 14 16 472 15 466 8.15e-44 160
Msa1416850 MtrunA17_Chr1g0179901 27.621 496 309 17 12 473 15 494 8.42e-44 161
Msa1416850 MtrunA17_Chr8g0335161 33.333 309 179 8 173 465 162 459 1.01e-43 160
Msa1416850 MtrunA17_Chr6g0486251 30.357 392 240 11 92 465 81 457 1.20e-43 160
Msa1416850 MtrunA17_Chr6g0486201 30.357 392 240 11 92 465 81 457 1.20e-43 160
Msa1416850 MtrunA17_Chr2g0294931 26.761 497 319 12 4 472 2 481 1.44e-43 160
Msa1416850 MtrunA17_Chr8g0339601 32.381 315 180 8 180 472 27 330 1.91e-43 156
Msa1416850 MtrunA17_Chr5g0429711 29.703 404 237 14 89 472 85 461 2.00e-43 159
Msa1416850 MtrunA17_Chr6g0462521 28.919 370 218 12 113 461 94 439 2.28e-43 159
Msa1416850 MtrunA17_Chr5g0440421 28.655 513 304 23 3 473 2 494 3.31e-43 159
Msa1416850 MtrunA17_Chr8g0374901 27.254 488 300 14 16 472 15 478 3.52e-43 159
Msa1416850 MtrunA17_Chr2g0329111 29.470 509 285 22 14 480 7 483 3.81e-43 159
Msa1416850 MtrunA17_Chr4g0066201 27.419 496 304 15 3 472 9 474 3.84e-43 159
Msa1416850 MtrunA17_Chr8g0334831 34.839 310 162 7 188 469 178 475 8.62e-43 158
Msa1416850 MtrunA17_Chr5g0448551 27.045 440 280 14 14 442 8 417 1.24e-42 157
Msa1416850 MtrunA17_Chr6g0463861 29.708 377 217 11 126 472 115 473 1.37e-42 157
Msa1416850 MtrunA17_Chr2g0294921 26.572 493 325 11 4 472 151 630 1.50e-42 159
Msa1416850 MtrunA17_Chr3g0079731 28.321 399 236 13 109 469 91 477 2.00e-42 157
Msa1416850 MtrunA17_Chr7g0218311 26.962 497 309 13 7 472 10 483 2.30e-42 157
Msa1416850 MtrunA17_Chr5g0419761 27.183 504 300 16 12 473 8 486 2.41e-42 157
Msa1416850 MtrunA17_Chr4g0072771 26.526 475 304 13 11 472 23 465 2.47e-42 156
Msa1416850 MtrunA17_Chr4g0044481 30.073 409 236 13 13 409 27 397 2.54e-42 155
Msa1416850 MtrunA17_Chr8g0339631 33.441 311 171 11 180 468 168 464 2.62e-42 156
Msa1416850 MtrunA17_Chr1g0153461 36.667 210 118 3 276 471 3 211 2.79e-42 149
Msa1416850 MtrunA17_Chr5g0442601 26.923 390 233 12 117 473 506 876 4.44e-42 160
Msa1416850 MtrunA17_Chr5g0442601 27.687 307 167 9 123 409 62 333 2.44e-28 119
Msa1416850 MtrunA17_Chr7g0243851 27.160 486 278 15 11 472 9 442 6.41e-42 155
Msa1416850 MtrunA17_Chr4g0066171 26.639 488 317 12 3 472 12 476 8.75e-42 155
Msa1416850 MtrunA17_Chr5g0442511 31.373 306 173 8 193 472 199 493 1.42e-41 155
Msa1416850 MtrunA17_Chr4g0066131 25.979 485 305 12 14 470 14 472 2.62e-41 154
Msa1416850 MtrunA17_Chr5g0410941 26.157 497 318 13 4 472 14 489 2.62e-41 154
Msa1416850 MtrunA17_Chr7g0265111 28.112 498 309 20 11 475 37 518 3.36e-41 154
Msa1416850 MtrunA17_Chr8g0335141 34.783 276 155 6 212 472 203 468 3.95e-41 153
Msa1416850 MtrunA17_Chr5g0442491 24.644 491 318 13 14 473 6 475 1.46e-40 152
Msa1416850 MtrunA17_Chr5g0428081 26.708 483 311 11 16 472 14 479 1.76e-40 152
Msa1416850 MtrunA17_Chr5g0442521 25.806 496 301 16 14 470 6 473 1.99e-40 151
Msa1416850 MtrunA17_Chr5g0442541 25.549 501 294 15 13 473 5 466 2.36e-40 151
Msa1416850 MtrunA17_Chr8g0374971 26.033 484 317 11 14 472 13 480 2.80e-40 151
Msa1416850 MtrunA17_Chr7g0243761 26.681 476 303 13 12 472 10 454 2.81e-40 150
Msa1416850 MtrunA17_Chr4g0042931 28.310 491 283 19 12 469 6 460 3.23e-40 150
Msa1416850 MtrunA17_Chr8g0334861 29.867 375 221 12 120 469 103 460 4.18e-40 150
Msa1416850 MtrunA17_Chr1g0173121 24.390 492 305 17 9 472 10 462 7.27e-40 149
Msa1416850 MtrunA17_Chr1g0159551 31.915 235 143 5 248 472 232 459 7.28e-40 149
Msa1416850 MtrunA17_Chr4g0044521 31.044 364 222 12 126 469 109 463 7.98e-40 149
Msa1416850 MtrunA17_Chr6g0449931 29.945 364 219 9 120 461 107 456 1.59e-39 149
Msa1416850 MtrunA17_Chr2g0302961 26.423 492 303 17 11 472 3 465 3.76e-39 147
Msa1416850 MtrunA17_Chr5g0401851 25.800 500 321 14 5 472 2 483 4.22e-39 148
Msa1416850 MtrunA17_Chr5g0420801 28.481 474 297 14 13 469 7 455 5.39e-39 147
Msa1416850 MtrunA17_Chr2g0302991 27.073 410 249 13 91 472 75 462 1.62e-38 145
Msa1416850 MtrunA17_Chr6g0454371 36.364 176 108 1 299 474 1 172 3.18e-38 137
Msa1416850 MtrunA17_Chr7g0243711 32.184 261 158 6 226 472 61 316 1.75e-37 140
Msa1416850 MtrunA17_Chr1g0207881 32.624 282 157 9 12 289 7 259 4.35e-37 140
Msa1416850 MtrunA17_Chr1g0207881 47.761 134 68 1 341 472 251 384 1.79e-35 136
Msa1416850 MtrunA17_Chr2g0294941 28.415 366 229 9 125 466 17 373 8.72e-37 139
Msa1416850 MtrunA17_Chr8g0361411 25.103 486 304 14 10 472 5 453 1.38e-36 140
Msa1416850 MtrunA17_Chr1g0207911 36.364 242 147 5 12 250 7 244 1.67e-36 135
Msa1416850 MtrunA17_Chr1g0165701 26.719 509 310 21 1 472 1 483 1.83e-36 140
Msa1416850 MtrunA17_Chr8g0350881 25.562 489 317 12 12 472 11 480 3.30e-36 140
Msa1416850 MtrunA17_Chr8g0374941 26.434 488 298 15 2 454 465 926 3.49e-36 143
Msa1416850 MtrunA17_Chr8g0374941 24.696 494 307 14 16 472 952 1417 3.93e-36 142
Msa1416850 MtrunA17_Chr8g0374941 25.207 484 313 15 4 458 2 465 8.18e-36 142
Msa1416850 MtrunA17_Chr8g0382021 33.493 209 126 4 277 472 280 488 3.75e-36 139
Msa1416850 MtrunA17_Chr5g0429681 35.714 266 141 10 221 470 246 497 7.03e-36 139
Msa1416850 MtrunA17_Chr6g0482061 26.061 495 303 16 13 471 11 478 1.08e-35 138
Msa1416850 MtrunA17_Chr8g0369341 26.042 480 315 12 11 469 5 465 9.25e-35 135
Msa1416850 MtrunA17_Chr8g0355221 27.882 373 232 12 126 472 125 486 1.28e-34 135
Msa1416850 MtrunA17_Chr5g0403641 23.960 505 308 16 6 480 52 510 3.60e-34 134
Msa1416850 MtrunA17_Chr7g0243611 34.956 226 139 4 192 409 46 271 8.91e-34 129
Msa1416850 MtrunA17_Chr5g0431431 32.692 260 147 6 163 417 94 330 1.02e-33 130
Msa1416850 MtrunA17_Chr7g0243811 26.667 420 265 15 25 428 1 393 1.43e-33 130
Msa1416850 MtrunA17_Chr7g0243911 33.854 192 114 3 279 457 24 215 2.26e-33 125
Msa1416850 MtrunA17_Chr5g0416741 24.082 490 325 13 12 472 12 483 2.39e-33 132
Msa1416850 MtrunA17_Chr5g0416821 24.187 492 311 16 12 472 13 473 3.42e-33 131
Msa1416850 MtrunA17_Chr8g0370941 26.157 497 292 20 13 461 8 477 9.62e-33 130
Msa1416850 MtrunA17_Chr6g0463891 26.626 492 312 17 12 472 11 484 2.05e-32 129
Msa1416850 MtrunA17_Chr3g0079711 34.973 183 103 4 303 469 3 185 2.67e-31 119
Msa1416850 MtrunA17_Chr6g0454231 30.078 256 130 7 223 473 8 219 3.55e-31 125
Msa1416850 MtrunA17_Chr8g0336261 39.416 137 79 1 299 435 1 133 9.14e-31 115
Msa1416850 MtrunA17_Chr7g0241801 30.686 277 161 11 210 476 176 431 3.28e-30 122
Msa1416850 MtrunA17_Chr6g0466831 25.000 500 298 18 12 481 17 469 6.53e-30 121
Msa1416850 MtrunA17_Chr7g0241781 29.811 265 160 10 222 481 191 434 9.73e-30 120
Msa1416850 MtrunA17_Chr6g0466841 24.400 500 301 18 12 481 17 469 1.86e-29 120
Msa1416850 MtrunA17_Chr4g0069611 25.708 459 299 16 3 447 6 436 4.16e-29 119
Msa1416850 MtrunA17_Chr4g0029151 25.828 453 275 18 3 432 10 424 1.21e-27 115
Msa1416850 MtrunA17_Chr8g0367221 26.782 463 283 15 12 448 11 443 2.33e-27 116
Msa1416850 MtrunA17_Chr8g0367221 25.806 465 286 13 12 448 797 1230 5.73e-27 115
Msa1416850 MtrunA17_Chr8g0367221 35.429 175 108 4 278 448 1547 1720 5.45e-25 109
Msa1416850 MtrunA17_Chr7g0232351 26.601 406 235 16 12 386 5 378 7.38e-27 111
Msa1416850 MtrunA17_Chr2g0302851 27.757 263 175 8 223 481 216 467 8.91e-27 112
Msa1416850 MtrunA17_Chr2g0278721 24.686 478 291 16 5 447 509 952 9.02e-27 114
Msa1416850 MtrunA17_Chr2g0278721 25.478 471 290 17 3 447 6 441 3.24e-26 112
Msa1416850 MtrunA17_Chr2g0278741 32.143 224 137 7 230 447 309 523 2.54e-26 112
Msa1416850 MtrunA17_Chr8g0337381 41.176 119 68 1 350 468 5 121 6.17e-26 102
Msa1416850 MtrunA17_Chr6g0453981 31.401 207 128 5 156 350 27 231 1.46e-25 104
Msa1416850 MtrunA17_Chr6g0464091 24.449 499 309 19 12 481 17 476 2.28e-25 108
Msa1416850 MtrunA17_Chr5g0409591 24.109 477 275 16 14 435 5 449 4.97e-25 107
Msa1416850 MtrunA17_Chr7g0231631 28.302 265 154 7 226 472 13 259 2.45e-24 102
Msa1416850 MtrunA17_Chr8g0357361 36.126 191 113 6 223 409 64 249 5.58e-23 98.2
Msa1416850 MtrunA17_Chr8g0336321 23.457 486 321 15 3 469 2 455 9.55e-23 100
Msa1416850 MtrunA17_Chr4g0039881 28.384 229 153 7 224 448 193 414 1.20e-22 100
Msa1416850 MtrunA17_Chr8g0336251 28.063 253 168 6 221 469 213 455 4.03e-22 99.0
Msa1416850 MtrunA17_Chr4g0029131 30.435 230 138 7 212 432 200 416 5.62e-22 99.4
Msa1416850 MtrunA17_Chr3g0092031 29.825 171 115 4 279 447 6 173 3.38e-21 91.7
Msa1416850 MtrunA17_Chr4g0066141 33.333 162 90 5 329 472 190 351 3.96e-21 94.7
Msa1416850 MtrunA17_Chr5g0427571 28.704 216 147 5 221 430 43 257 3.02e-20 91.3
Msa1416850 MtrunA17_Chr6g0453941 28.000 200 134 5 147 338 75 272 1.37e-18 85.9
Msa1416850 MtrunA17_Chr6g0454111 28.571 182 120 4 146 319 4 183 1.90e-18 83.2
Msa1416850 MtrunA17_Chr1g0196851 26.809 235 149 7 212 436 240 461 4.14e-18 87.0
Msa1416850 MtrunA17_Chr4g0040711 29.032 217 137 8 230 441 220 424 1.76e-17 84.7
Msa1416850 MtrunA17_Chr2g0283041 29.016 193 123 5 271 459 250 432 3.55e-17 84.0
Msa1416850 MtrunA17_Chr4g0040691 28.161 174 121 3 279 448 261 434 1.02e-16 82.4
Msa1416850 MtrunA17_Chr2g0319761 23.881 469 288 21 10 448 5 434 1.53e-15 79.0
Msa1416850 MtrunA17_Chr8g0377911 30.612 147 86 4 14 157 8 141 6.18e-15 72.4
Msa1416850 MtrunA17_Chr7g0243731 37.500 80 50 0 339 418 1 80 6.61e-15 69.7
Msa1416850 MtrunA17_Chr2g0319751 28.509 228 140 10 230 450 697 908 1.56e-13 73.2
Msa1416850 MtrunA17_Chr2g0319751 28.814 177 95 7 271 442 251 401 4.67e-11 65.5
Msa1416850 MtrunA17_Chr7g0243721 35.294 119 74 2 213 328 23 141 2.03e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416850 AT2G23250.1 44.902 461 230 9 16 475 1 438 1.06e-134 396
Msa1416850 AT2G23260.1 44.068 472 234 10 11 475 8 456 1.77e-134 396
Msa1416850 AT4G15490.1 40.710 479 255 9 13 477 8 471 1.90e-122 366
Msa1416850 AT3G21560.1 40.638 470 260 9 13 472 12 472 2.90e-121 364
Msa1416850 AT4G15480.1 39.400 467 271 7 12 472 18 478 1.45e-119 359
Msa1416850 AT4G15500.1 40.860 465 261 5 13 473 9 463 2.72e-118 355
Msa1416850 AT1G05680.1 36.069 463 271 8 13 469 6 449 5.43e-104 318
Msa1416850 AT1G05675.1 37.446 462 266 9 13 469 6 449 1.46e-103 317
Msa1416850 AT4G15550.1 36.756 487 277 11 1 471 1 472 6.11e-98 303
Msa1416850 AT2G31750.1 35.805 472 276 11 9 473 4 455 2.47e-97 301
Msa1416850 AT2G31750.2 35.865 474 277 11 9 475 4 457 4.37e-97 301
Msa1416850 AT4G14090.1 37.313 469 257 14 13 471 13 454 2.90e-96 298
Msa1416850 AT2G31790.1 35.837 466 270 10 13 469 8 453 4.26e-96 298
Msa1416850 AT2G43820.1 37.100 469 257 12 13 472 7 446 2.00e-94 293
Msa1416850 AT2G43840.2 34.110 472 271 13 13 474 7 448 3.53e-93 290
Msa1416850 AT2G43840.1 34.110 472 271 13 13 474 7 448 4.45e-92 287
Msa1416850 AT1G05530.1 34.874 476 270 12 13 473 5 455 1.06e-90 284
Msa1416850 AT1G05560.1 34.025 482 277 13 13 480 5 459 4.61e-89 280
Msa1416850 AT1G05560.2 34.025 482 277 13 13 480 55 509 1.30e-88 280
Msa1416850 AT1G24100.1 34.433 485 278 15 1 472 1 458 5.48e-83 264
Msa1416850 AT1G22380.1 30.849 483 306 10 13 477 13 485 6.21e-76 246
Msa1416850 AT1G22340.1 31.733 479 302 11 13 474 13 483 1.36e-75 246
Msa1416850 AT1G22360.1 30.769 481 305 11 13 475 10 480 3.58e-74 242
Msa1416850 AT1G22400.1 30.977 481 305 9 13 475 13 484 9.57e-73 238
Msa1416850 AT2G28080.1 30.297 472 299 13 22 481 27 480 2.95e-70 231
Msa1416850 AT2G36970.1 29.175 473 310 11 13 472 10 470 2.14e-69 229
Msa1416850 AT1G78270.1 30.266 489 293 12 13 473 13 481 1.28e-68 228
Msa1416850 AT1G22360.2 29.730 481 298 11 13 475 10 468 1.42e-68 227
Msa1416850 AT1G22370.2 29.835 486 322 9 1 475 1 478 4.89e-68 226
Msa1416850 AT2G23210.1 41.958 286 143 7 11 292 8 274 8.91e-67 216
Msa1416850 AT5G59590.1 31.211 487 278 16 4 472 2 449 1.94e-63 213
Msa1416850 AT5G59580.1 30.753 478 274 16 13 472 9 447 1.02e-62 211
Msa1416850 AT2G36770.1 28.400 500 320 15 1 473 1 489 8.04e-60 204
Msa1416850 AT3G46680.1 28.866 485 284 14 7 470 3 447 4.71e-57 196
Msa1416850 AT3G46660.1 30.085 472 280 13 14 469 15 452 5.54e-57 196
Msa1416850 AT2G36780.1 27.811 507 328 15 1 480 1 496 7.61e-57 196
Msa1416850 AT5G38010.1 30.737 475 277 13 13 469 10 450 6.44e-56 193
Msa1416850 AT2G15480.1 28.000 500 307 17 5 472 2 480 2.54e-55 192
Msa1416850 AT5G05870.1 29.792 480 292 11 11 474 6 456 2.66e-55 191
Msa1416850 AT4G34131.1 29.897 485 302 15 11 471 8 478 4.26e-55 191
Msa1416850 AT5G38040.1 28.785 469 274 14 21 469 18 446 2.01e-54 189
Msa1416850 AT3G46670.1 29.958 474 278 15 13 469 9 445 2.59e-54 189
Msa1416850 AT2G15490.3 29.175 497 297 17 9 472 3 477 3.25e-54 189
Msa1416850 AT3G46690.1 30.297 472 280 15 13 469 9 446 3.58e-54 188
Msa1416850 AT2G36750.1 29.563 504 304 20 1 473 1 484 5.80e-54 189
Msa1416850 AT4G34138.1 30.505 495 286 16 11 472 9 478 5.80e-54 189
Msa1416850 AT2G15480.2 27.843 510 305 17 5 472 2 490 7.58e-54 188
Msa1416850 AT2G36800.1 28.906 512 301 19 1 473 1 488 7.81e-54 188
Msa1416850 AT4G01070.1 29.832 476 288 17 13 465 8 460 1.70e-53 187
Msa1416850 AT2G15490.1 28.800 500 298 17 9 472 3 480 3.27e-53 186
Msa1416850 AT2G36760.1 27.000 500 327 14 1 473 1 489 1.27e-52 185
Msa1416850 AT2G36790.1 29.283 502 305 18 12 481 12 495 1.48e-52 185
Msa1416850 AT2G30150.2 28.753 473 291 13 13 472 13 452 1.74e-52 184
Msa1416850 AT3G02100.1 27.215 474 300 14 13 470 13 457 2.15e-52 184
Msa1416850 AT1G22370.1 34.114 299 188 4 182 475 14 308 5.31e-52 178
Msa1416850 AT3G46650.1 28.964 473 281 14 5 468 2 428 1.02e-51 181
Msa1416850 AT3G53160.1 29.800 500 290 18 12 473 7 483 1.12e-51 182
Msa1416850 AT4G34135.1 29.435 496 291 13 11 471 9 480 2.12e-51 181
Msa1416850 AT2G30150.1 29.032 465 284 14 21 472 5 436 3.85e-51 180
Msa1416850 AT3G11340.1 28.008 482 297 15 4 473 2 445 5.07e-51 180
Msa1416850 AT2G30140.2 28.092 477 287 14 13 472 13 450 1.07e-50 179
Msa1416850 AT2G30140.1 28.033 478 287 14 13 472 13 451 1.52e-50 179
Msa1416850 AT3G16520.3 32.070 343 208 9 131 462 121 449 2.88e-50 178
Msa1416850 AT3G46700.1 27.651 481 282 14 13 472 9 444 7.07e-50 177
Msa1416850 AT5G05880.1 28.421 475 293 14 12 472 7 448 9.54e-50 176
Msa1416850 AT3G16520.1 32.653 343 204 10 131 458 121 451 1.34e-49 176
Msa1416850 AT3G46720.1 28.908 467 284 12 13 469 9 437 4.21e-49 174
Msa1416850 AT3G16520.2 33.133 332 195 10 131 447 121 440 1.56e-48 173
Msa1416850 AT4G15280.2 26.253 499 314 14 7 473 30 506 9.61e-48 172
Msa1416850 AT4G15280.1 26.061 495 312 14 11 473 2 474 1.48e-47 171
Msa1416850 AT5G05860.1 27.311 476 299 13 12 474 8 449 1.21e-46 168
Msa1416850 AT1G30530.1 27.350 468 305 12 13 473 12 451 2.64e-46 167
Msa1416850 AT5G17050.1 27.542 472 305 12 13 473 12 457 6.24e-46 166
Msa1416850 AT3G22250.1 26.737 475 277 15 7 445 2 441 1.37e-45 165
Msa1416850 AT3G55700.1 27.623 467 289 18 23 473 18 451 2.06e-45 165
Msa1416850 AT3G21790.1 29.610 385 222 9 120 472 111 478 2.65e-45 165
Msa1416850 AT5G05900.1 27.673 477 293 14 12 472 7 447 3.94e-45 164
Msa1416850 AT1G07260.1 27.016 496 308 16 8 473 1 472 4.29e-45 164
Msa1416850 AT5G17040.1 25.855 468 308 11 13 473 5 440 1.90e-44 162
Msa1416850 AT3G55710.1 26.531 490 304 17 4 473 2 455 1.23e-43 160
Msa1416850 AT1G01420.1 35.606 264 151 5 215 465 202 459 1.70e-43 160
Msa1416850 AT1G01420.2 28.571 476 293 15 13 465 11 462 1.81e-43 160
Msa1416850 AT1G73880.1 27.328 494 306 18 3 473 4 467 2.25e-43 159
Msa1416850 AT1G07250.1 29.440 411 254 15 83 473 79 473 3.27e-43 159
Msa1416850 AT3G21800.1 24.641 487 322 11 14 472 6 475 3.05e-42 157
Msa1416850 AT2G29740.1 26.556 482 317 16 11 470 6 472 1.25e-41 155
Msa1416850 AT2G16890.2 27.651 481 311 15 13 475 9 470 1.74e-41 154
Msa1416850 AT1G10400.1 25.673 483 311 15 11 471 5 461 3.70e-41 153
Msa1416850 AT5G05890.1 26.316 475 307 12 12 472 7 452 8.11e-41 152
Msa1416850 AT5G03490.1 28.421 475 292 16 13 471 19 461 8.42e-41 152
Msa1416850 AT5G17040.2 31.058 293 188 6 182 473 59 338 1.51e-40 149
Msa1416850 AT4G15260.1 27.717 368 227 8 131 473 2 355 3.03e-40 148
Msa1416850 AT1G01390.1 35.206 267 141 5 218 464 205 459 7.92e-40 150
Msa1416850 AT5G66690.1 26.824 507 287 22 13 473 7 475 9.26e-40 150
Msa1416850 AT1G01390.2 35.206 267 141 5 218 464 222 476 9.36e-40 150
Msa1416850 AT5G14860.1 26.735 490 313 18 13 475 8 478 1.58e-39 149
Msa1416850 AT3G21750.1 28.385 384 226 12 122 473 103 469 2.20e-39 149
Msa1416850 AT3G21780.1 24.435 487 323 10 11 472 2 468 5.17e-39 148
Msa1416850 AT3G53150.1 25.919 517 323 14 1 473 10 510 1.06e-38 147
Msa1416850 AT5G26310.1 25.494 506 284 20 13 471 7 466 1.71e-38 146
Msa1416850 AT3G50740.1 26.946 501 289 20 13 471 7 472 1.78e-38 146
Msa1416850 AT2G26480.1 27.329 483 287 16 13 474 8 447 2.91e-38 145
Msa1416850 AT3G21760.1 26.632 383 241 10 117 472 111 480 4.28e-38 145
Msa1416850 AT2G29750.1 25.466 483 326 16 11 473 6 474 3.07e-37 143
Msa1416850 AT5G17030.1 26.483 472 309 13 13 473 12 456 4.62e-37 142
Msa1416850 AT2G29730.1 27.077 325 202 10 158 473 165 463 2.05e-36 140
Msa1416850 AT5G37950.1 28.075 374 225 11 28 387 1 344 3.73e-36 137
Msa1416850 AT2G29710.1 26.543 324 206 9 158 473 164 463 1.50e-35 138
Msa1416850 AT5G12890.1 26.415 371 245 9 126 479 129 488 1.04e-34 136
Msa1416850 AT1G07240.1 29.831 295 185 9 193 473 190 476 1.13e-34 135
Msa1416850 AT4G36770.1 26.403 481 282 15 11 455 2 446 1.25e-34 135
Msa1416850 AT5G37950.2 27.493 371 225 11 28 387 1 338 2.42e-34 132
Msa1416850 AT2G18560.1 30.745 322 176 10 173 465 66 369 3.39e-34 132
Msa1416850 AT1G06000.1 27.439 492 278 18 1 472 1 433 5.55e-34 133
Msa1416850 AT2G16890.3 27.021 433 280 14 13 428 9 422 2.13e-33 131
Msa1416850 AT1G51210.1 25.561 446 287 14 8 442 17 428 3.06e-30 122
Msa1416850 AT2G18570.1 23.750 480 306 17 13 461 5 455 5.13e-29 119
Msa1416850 AT5G65550.1 30.531 226 142 8 223 444 220 434 8.75e-29 119
Msa1416850 AT4G34135.2 25.882 340 203 9 11 323 9 326 1.96e-22 98.6
Msa1416850 AT4G27570.1 22.951 488 301 17 11 472 5 443 7.32e-22 98.6
Msa1416850 AT2G22590.1 27.953 254 164 7 223 470 224 464 1.68e-21 97.4
Msa1416850 AT5G49690.1 27.059 255 159 9 223 473 217 448 3.85e-21 96.3
Msa1416850 AT3G29630.1 22.822 482 324 15 11 481 4 448 1.70e-20 94.4
Msa1416850 AT5G53990.1 30.387 181 120 4 273 448 238 417 1.62e-19 91.3
Msa1416850 AT3G29630.2 28.505 214 143 6 273 481 214 422 2.04e-19 90.9
Msa1416850 AT4G27560.1 21.967 478 318 17 11 472 5 443 4.39e-19 90.1
Msa1416850 AT5G54010.1 21.396 444 285 15 11 432 4 405 6.30e-19 89.7
Msa1416850 AT2G22930.1 21.545 492 304 17 8 472 1 437 4.75e-18 86.7
Msa1416850 AT1G64910.1 21.992 482 314 16 12 475 5 442 1.25e-17 85.5
Msa1416850 AT1G50580.1 24.020 204 151 3 273 472 239 442 1.25e-16 82.4
Msa1416850 AT4G01070.2 25.895 363 223 16 13 353 8 346 1.47e-16 81.3
Msa1416850 AT4G09500.2 21.962 469 286 18 8 448 1 417 2.94e-16 81.3
Msa1416850 AT5G54060.1 23.183 289 201 8 187 468 184 458 2.12e-14 75.9
Msa1416850 AT4G09500.1 26.705 176 123 4 278 448 218 392 2.48e-14 75.1
Msa1416850 AT1G64920.1 23.902 205 146 6 273 470 238 439 4.18e-12 68.6

Find 114 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAATTCCACGTCGATTTC+GGG 0.187714 tig0024408:+57284 None:intergenic
CATTAAGGCCTTTGGTTAAA+AGG 0.194942 tig0024408:+57708 None:intergenic
TGTATTCATCAGGGGATTTA+AGG 0.195702 tig0024408:+57546 None:intergenic
AATGGGCCTACAGGTGTAAT+TGG 0.210652 tig0024408:+57080 None:intergenic
ACCAATAGGACATGAATTTC+TGG 0.211648 tig0024408:+57782 None:intergenic
GAGACTAATGGGACCGAATT+TGG 0.214605 tig0024408:+57511 None:intergenic
AGCAAATTCTTTCTACGAAT+TGG 0.238092 tig0024408:-57138 Msa1416850:CDS
GGGTAATTCCACGTCGATTT+CGG 0.251769 tig0024408:+57283 None:intergenic
ATATCCCATGTGCTTGTCTT+TGG 0.268042 tig0024408:-57382 Msa1416850:CDS
GAAACAAGCATTGCATTTGT+TGG 0.324145 tig0024408:+56627 None:intergenic
AGTAATGAAGGTGGAACTAA+TGG 0.348707 tig0024408:+57062 None:intergenic
TGGTGGCAAGTGTGACATTA+AGG 0.349319 tig0024408:+57693 None:intergenic
ACCAGAAATTCATGTCCTAT+TGG 0.362491 tig0024408:-57783 Msa1416850:CDS
TAACTGAAGATGGTGGCTTT+TGG 0.369876 tig0024408:+56967 None:intergenic
AAGACATGAAGAAACTGAAA+TGG 0.388659 tig0024408:-57166 Msa1416850:CDS
ACCTCCAACAATTTCTTCAA+TGG 0.392071 tig0024408:+56530 None:intergenic
ATCAGGGGATTTAAGGCCTT+GGG 0.394811 tig0024408:+57553 None:intergenic
ATGAGATTTGTGAGACTAAT+GGG 0.397989 tig0024408:+57500 None:intergenic
TATGGGGATTCGGTTGAAAC+AGG 0.399818 tig0024408:-56592 Msa1416850:CDS
ATTTCAGTTTCTTCATGTCT+TGG 0.400551 tig0024408:+57168 None:intergenic
GTGTCCACAAACTAAGGTTT+TGG 0.404149 tig0024408:-56757 Msa1416850:CDS
AAGTGTGACATTAAGGCCTT+TGG 0.409212 tig0024408:+57700 None:intergenic
CATCAGGGGATTTAAGGCCT+TGG 0.411880 tig0024408:+57552 None:intergenic
ATTAAGGCCTTTGGTTAAAA+GGG 0.414486 tig0024408:+57709 None:intergenic
GTGATGAAGAGTAAGGATAT+TGG 0.420945 tig0024408:-56849 Msa1416850:CDS
ATGAGTTCCATGTATTCATC+AGG 0.421010 tig0024408:+57536 None:intergenic
ATTTGCCTAGTCTAAGTAAA+GGG 0.429558 tig0024408:+57732 None:intergenic
GCGAGGGAGGCGGTGGCTGA+TGG 0.437864 tig0024408:-56459 Msa1416850:CDS
GTTAAGAAACACGCTATTGC+AGG 0.441026 tig0024408:+56729 None:intergenic
TACATGGTGTCCACAAACTA+AGG 0.443360 tig0024408:-56763 Msa1416850:CDS
ACATGCGGCGAGGGAGGCGG+TGG 0.445235 tig0024408:-56466 Msa1416850:CDS
AACGATAGTATATGGAGTAA+AGG 0.445421 tig0024408:+57345 None:intergenic
TTTGCTACCCAAGGAACAAA+AGG 0.448391 tig0024408:+57422 None:intergenic
ACGATAGTATATGGAGTAAA+GGG 0.453056 tig0024408:+57346 None:intergenic
GTTGTAGAAACGATAGTATA+TGG 0.453669 tig0024408:+57337 None:intergenic
GATGAGATTTGTGAGACTAA+TGG 0.455139 tig0024408:+57499 None:intergenic
TTAGTTCCACCTTCATTACT+AGG 0.457678 tig0024408:-57059 Msa1416850:CDS
TCAGTTATATATATTTCATT+CGG 0.457992 tig0024408:-56951 Msa1416850:CDS
GAGCTGAAAATGCAACCAAT+AGG 0.460632 tig0024408:+57768 None:intergenic
ATGGAACTCATAGCCAAATT+CGG 0.461232 tig0024408:-57524 Msa1416850:CDS
TGATCTTGACCTAGTAATGA+AGG 0.463203 tig0024408:+57050 None:intergenic
AGAGCCATTGAAGAAATTGT+TGG 0.473416 tig0024408:-56534 Msa1416850:CDS
TTAGAAGAAACAAAAGAGAA+AGG 0.474379 tig0024408:-56795 Msa1416850:CDS
CATTGTGGATAACCAATCAT+AGG 0.478572 tig0024408:+56660 None:intergenic
GGTGGAACTAATGGGCCTAC+AGG 0.479863 tig0024408:+57071 None:intergenic
TGGTTTCAGCAATGGAAGAC+CGG 0.481559 tig0024408:+57262 None:intergenic
ATGGGCCTACAGGTGTAATT+GGG 0.485212 tig0024408:+57081 None:intergenic
GAAATATATATAACTGAAGA+TGG 0.487490 tig0024408:+56957 None:intergenic
AAGAAATTGTTGGAGGTGAA+AGG 0.488865 tig0024408:-56524 Msa1416850:CDS
CACAAGATTCTTGCATGGAA+TGG 0.490164 tig0024408:-56995 Msa1416850:CDS
TTTGATGGAAGAATAAAAGA+TGG 0.494976 tig0024408:+57230 None:intergenic
AAAAGATGTCATTGATTCAA+TGG 0.497573 tig0024408:-57114 Msa1416850:CDS
CGGTTGAAACAGGACAATGA+TGG 0.499891 tig0024408:-56582 Msa1416850:CDS
AGAAAGGATTGGTTGTTACA+TGG 0.502350 tig0024408:-56779 Msa1416850:CDS
AGGGAGGCGGTGGCTGATGG+TGG 0.507840 tig0024408:-56456 Msa1416850:CDS
GAAACATGCGGCGAGGGAGG+CGG 0.508586 tig0024408:-56469 Msa1416850:CDS
AAACAGGACGTTGATTCCAT+TGG 0.517626 tig0024408:+57598 None:intergenic
AGGTCTTGTGGTTTCAGCAA+TGG 0.518610 tig0024408:+57254 None:intergenic
GTTTCTTAACACACTGTGGA+TGG 0.529174 tig0024408:-56716 Msa1416850:CDS
AGACATGAAGAAACTGAAAT+GGG 0.530587 tig0024408:-57165 Msa1416850:CDS
ATAAAAGATGGAAGGTCTTG+TGG 0.531512 tig0024408:+57242 None:intergenic
AGAAACAAAAGAGAAAGGAT+TGG 0.532118 tig0024408:-56790 Msa1416850:CDS
GTAATGAAGGTGGAACTAAT+GGG 0.535852 tig0024408:+57063 None:intergenic
GGTTGAAACAGGACAATGAT+GGG 0.536148 tig0024408:-56581 Msa1416850:CDS
ACTGCAGGAGTACCTATGAT+TGG 0.539262 tig0024408:-56672 Msa1416850:CDS
GATTTGCCTAGTCTAAGTAA+AGG 0.540884 tig0024408:+57731 None:intergenic
TAAATCCCCTGATGAATACA+TGG 0.543699 tig0024408:-57543 Msa1416850:CDS
GGAGCTGAAACATGCGGCGA+GGG 0.548892 tig0024408:-56475 Msa1416850:CDS
TCTCTGGGTGATGAAGAGTA+AGG 0.551074 tig0024408:-56856 Msa1416850:CDS
CCCACTTCTTACTCTACCAA+TGG 0.551509 tig0024408:-57614 Msa1416850:CDS
GAACATTTCAGCTAAAACAT+CGG 0.554683 tig0024408:+57190 None:intergenic
GCCATTGAAGAAATTGTTGG+AGG 0.554838 tig0024408:-56531 Msa1416850:CDS
TGAACCAAAACCTTAGTTTG+TGG 0.556902 tig0024408:+56753 None:intergenic
GCTGAAACATGCGGCGAGGG+AGG 0.560744 tig0024408:-56472 Msa1416850:CDS
TTGCTACCCAAGGAACAAAA+GGG 0.560980 tig0024408:+57423 None:intergenic
ACATTGGAAGCTGTAACTGC+AGG 0.571139 tig0024408:-56687 Msa1416850:CDS
CCATTGGTAGAGTAAGAAGT+GGG 0.575004 tig0024408:+57614 None:intergenic
GGGGACGGTGTCTGTGTCTG+TGG 0.576171 tig0024408:+57634 None:intergenic
TTCAGCTAAAACATCGGACA+TGG 0.577833 tig0024408:+57196 None:intergenic
TGTTCCTTGGGTAGCAAACG+TGG 0.583754 tig0024408:-57417 Msa1416850:CDS
ATGGAAGAATAAAAGATGGA+AGG 0.584353 tig0024408:+57234 None:intergenic
GACGGTGTCTGTGTCTGTGG+TGG 0.586453 tig0024408:+57637 None:intergenic
TATATGGAGTAAAGGGTACA+AGG 0.589998 tig0024408:+57353 None:intergenic
GGTTTCAGCAATGGAAGACC+GGG 0.596842 tig0024408:+57263 None:intergenic
GTAATTCCACGTCGATTTCG+GGG 0.603436 tig0024408:+57285 None:intergenic
TTGGGATATGTCGAAGCCGT+CGG 0.609015 tig0024408:+57571 None:intergenic
TGAGTTCCATGTATTCATCA+GGG 0.611788 tig0024408:+57537 None:intergenic
CTGATGGTGGCTCTTCTGAG+AGG 0.612329 tig0024408:-56443 Msa1416850:CDS
GAAATCGACGTGGAATTACC+CGG 0.614583 tig0024408:-57281 Msa1416850:CDS
TAAGCCACGTTTGCTACCCA+AGG 0.618408 tig0024408:+57413 None:intergenic
TCCATTGGTAGAGTAAGAAG+TGG 0.625007 tig0024408:+57613 None:intergenic
CTATGATTGGTTATCCACAA+TGG 0.629343 tig0024408:-56659 Msa1416850:CDS
GAGTTCCATGTATTCATCAG+GGG 0.630496 tig0024408:+57538 None:intergenic
GTTGGTTGATCAGTCCATTG+TGG 0.632886 tig0024408:+56645 None:intergenic
CTGTGGATGGAATTCTACAT+TGG 0.633378 tig0024408:-56703 Msa1416850:CDS
CATTCCATGCAAGAATCTTG+TGG 0.635345 tig0024408:+56996 None:intergenic
ATAAACCCTTTACTTAGACT+AGG 0.638559 tig0024408:-57737 Msa1416850:CDS
GACGCCACAAGATTCTTGCA+TGG 0.640093 tig0024408:-57000 Msa1416850:CDS
ATATATATAACTGAAGATGG+TGG 0.642086 tig0024408:+56960 None:intergenic
GACGGCTTCGACATATCCCA+AGG 0.643166 tig0024408:-57569 Msa1416850:CDS
TGGTGGTTGATTTGAAGACA+CGG 0.645486 tig0024408:+57654 None:intergenic
TGGAGCTGAAACATGCGGCG+AGG 0.651171 tig0024408:-56476 Msa1416850:CDS
TCTTGACCTAGTAATGAAGG+TGG 0.666199 tig0024408:+57053 None:intergenic
TGAATCCAAAGACAAGCACA+TGG 0.666711 tig0024408:+57377 None:intergenic
AAGACGTTGGAATTGAAATG+TGG 0.668188 tig0024408:-57022 Msa1416850:CDS
TGCGTTGGAGCTGAAACATG+CGG 0.670482 tig0024408:-56481 Msa1416850:CDS
GGTAGAGTAAGAAGTGGGGA+CGG 0.671471 tig0024408:+57619 None:intergenic
GCGTGTTTCTTAACACACTG+TGG 0.672897 tig0024408:-56720 Msa1416850:CDS
AGAAAACCCCGAAATCGACG+TGG 0.674952 tig0024408:-57291 Msa1416850:CDS
GTGGTAAACTAATTCAGTGG+TGG 0.675799 tig0024408:+57676 None:intergenic
GAATCCAAAGACAAGCACAT+GGG 0.703367 tig0024408:+57378 None:intergenic
ACGGTGGTAAACTAATTCAG+TGG 0.706027 tig0024408:+57673 None:intergenic
CATTGGTAGAGTAAGAAGTG+GGG 0.739463 tig0024408:+57615 None:intergenic
TGGTTGATTTGAAGACACGG+TGG 0.837597 tig0024408:+57657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAGTTATATATATTTCATT+CGG - tig0024408:57244-57263 Msa1416850:CDS 15.0%
!! TCAGTTATATATATTTCATT+CGG - tig0024408:57244-57263 Msa1416850:CDS 15.0%
!! GAAATATATATAACTGAAGA+TGG + tig0024408:57241-57260 None:intergenic 20.0%
!! GAAATATATATAACTGAAGA+TGG + tig0024408:57241-57260 None:intergenic 20.0%
!!! GATAATGCAAGCTAATTTTT+TGG + tig0024408:56747-56766 None:intergenic 25.0%
! TTTGATGGAAGAATAAAAGA+TGG + tig0024408:56968-56987 None:intergenic 25.0%
!! ATGGTTTTTATAGGATTTGA+TGG + tig0024408:56983-57002 None:intergenic 25.0%
!!! AAAAGATGTCATTGATTCAA+TGG - tig0024408:57081-57100 Msa1416850:CDS 25.0%
! ATATATATAACTGAAGATGG+TGG + tig0024408:57238-57257 None:intergenic 25.0%
!! ACAGTAACAAATATTTTCTC+TGG - tig0024408:57323-57342 Msa1416850:CDS 25.0%
!! CAGTAACAAATATTTTCTCT+GGG - tig0024408:57324-57343 Msa1416850:CDS 25.0%
! TTAGAAGAAACAAAAGAGAA+AGG - tig0024408:57400-57419 Msa1416850:CDS 25.0%
!!! GATAATGCAAGCTAATTTTT+TGG + tig0024408:56747-56766 None:intergenic 25.0%
! TTTGATGGAAGAATAAAAGA+TGG + tig0024408:56968-56987 None:intergenic 25.0%
!! ATGGTTTTTATAGGATTTGA+TGG + tig0024408:56983-57002 None:intergenic 25.0%
!!! AAAAGATGTCATTGATTCAA+TGG - tig0024408:57081-57100 Msa1416850:CDS 25.0%
! ATATATATAACTGAAGATGG+TGG + tig0024408:57238-57257 None:intergenic 25.0%
!! ACAGTAACAAATATTTTCTC+TGG - tig0024408:57323-57342 Msa1416850:CDS 25.0%
!! CAGTAACAAATATTTTCTCT+GGG - tig0024408:57324-57343 Msa1416850:CDS 25.0%
! TTAGAAGAAACAAAAGAGAA+AGG - tig0024408:57400-57419 Msa1416850:CDS 25.0%
ATAAACCCTTTACTTAGACT+AGG - tig0024408:56458-56477 Msa1416850:CDS 30.0%
ATTTGCCTAGTCTAAGTAAA+GGG + tig0024408:56466-56485 None:intergenic 30.0%
ATTAAGGCCTTTGGTTAAAA+GGG + tig0024408:56489-56508 None:intergenic 30.0%
ATGAGATTTGTGAGACTAAT+GGG + tig0024408:56698-56717 None:intergenic 30.0%
!!! TGCAAGCTAATTTTTTGGAA+GGG + tig0024408:56742-56761 None:intergenic 30.0%
!!! ATGCAAGCTAATTTTTTGGA+AGG + tig0024408:56743-56762 None:intergenic 30.0%
ACGATAGTATATGGAGTAAA+GGG + tig0024408:56852-56871 None:intergenic 30.0%
AACGATAGTATATGGAGTAA+AGG + tig0024408:56853-56872 None:intergenic 30.0%
GTTGTAGAAACGATAGTATA+TGG + tig0024408:56861-56880 None:intergenic 30.0%
ATGGAAGAATAAAAGATGGA+AGG + tig0024408:56964-56983 None:intergenic 30.0%
GAACATTTCAGCTAAAACAT+CGG + tig0024408:57008-57027 None:intergenic 30.0%
ATTTCAGTTTCTTCATGTCT+TGG + tig0024408:57030-57049 None:intergenic 30.0%
AAGACATGAAGAAACTGAAA+TGG - tig0024408:57029-57048 Msa1416850:CDS 30.0%
AGACATGAAGAAACTGAAAT+GGG - tig0024408:57030-57049 Msa1416850:CDS 30.0%
AGCAAATTCTTTCTACGAAT+TGG - tig0024408:57057-57076 Msa1416850:CDS 30.0%
AGAAACAAAAGAGAAAGGAT+TGG - tig0024408:57405-57424 Msa1416850:CDS 30.0%
!! TGTTTCTGATGTTTTTCGTA+TGG - tig0024408:57585-57604 Msa1416850:CDS 30.0%
! GTTTCTGATGTTTTTCGTAT+GGG - tig0024408:57586-57605 Msa1416850:CDS 30.0%
! TTTCTGATGTTTTTCGTATG+GGG - tig0024408:57587-57606 Msa1416850:CDS 30.0%
AGTGTTTAAGAAAAATGCGT+TGG - tig0024408:57699-57718 Msa1416850:CDS 30.0%
ATAAACCCTTTACTTAGACT+AGG - tig0024408:56458-56477 Msa1416850:CDS 30.0%
ATTTGCCTAGTCTAAGTAAA+GGG + tig0024408:56466-56485 None:intergenic 30.0%
ATTAAGGCCTTTGGTTAAAA+GGG + tig0024408:56489-56508 None:intergenic 30.0%
ATGAGATTTGTGAGACTAAT+GGG + tig0024408:56698-56717 None:intergenic 30.0%
!!! TGCAAGCTAATTTTTTGGAA+GGG + tig0024408:56742-56761 None:intergenic 30.0%
!!! ATGCAAGCTAATTTTTTGGA+AGG + tig0024408:56743-56762 None:intergenic 30.0%
ACGATAGTATATGGAGTAAA+GGG + tig0024408:56852-56871 None:intergenic 30.0%
AACGATAGTATATGGAGTAA+AGG + tig0024408:56853-56872 None:intergenic 30.0%
GTTGTAGAAACGATAGTATA+TGG + tig0024408:56861-56880 None:intergenic 30.0%
ATGGAAGAATAAAAGATGGA+AGG + tig0024408:56964-56983 None:intergenic 30.0%
GAACATTTCAGCTAAAACAT+CGG + tig0024408:57008-57027 None:intergenic 30.0%
ATTTCAGTTTCTTCATGTCT+TGG + tig0024408:57030-57049 None:intergenic 30.0%
AAGACATGAAGAAACTGAAA+TGG - tig0024408:57029-57048 Msa1416850:CDS 30.0%
AGACATGAAGAAACTGAAAT+GGG - tig0024408:57030-57049 Msa1416850:CDS 30.0%
AGCAAATTCTTTCTACGAAT+TGG - tig0024408:57057-57076 Msa1416850:CDS 30.0%
AGAAACAAAAGAGAAAGGAT+TGG - tig0024408:57405-57424 Msa1416850:CDS 30.0%
!! TGTTTCTGATGTTTTTCGTA+TGG - tig0024408:57585-57604 Msa1416850:CDS 30.0%
! GTTTCTGATGTTTTTCGTAT+GGG - tig0024408:57586-57605 Msa1416850:CDS 30.0%
! TTTCTGATGTTTTTCGTATG+GGG - tig0024408:57587-57606 Msa1416850:CDS 30.0%
AGTGTTTAAGAAAAATGCGT+TGG - tig0024408:57699-57718 Msa1416850:CDS 30.0%
ACCAGAAATTCATGTCCTAT+TGG - tig0024408:56412-56431 Msa1416850:CDS 35.0%
ACCAATAGGACATGAATTTC+TGG + tig0024408:56416-56435 None:intergenic 35.0%
GATTTGCCTAGTCTAAGTAA+AGG + tig0024408:56467-56486 None:intergenic 35.0%
CATTAAGGCCTTTGGTTAAA+AGG + tig0024408:56490-56509 None:intergenic 35.0%
TGTATTCATCAGGGGATTTA+AGG + tig0024408:56652-56671 None:intergenic 35.0%
TAAATCCCCTGATGAATACA+TGG - tig0024408:56652-56671 Msa1416850:CDS 35.0%
TGAGTTCCATGTATTCATCA+GGG + tig0024408:56661-56680 None:intergenic 35.0%
ATGAGTTCCATGTATTCATC+AGG + tig0024408:56662-56681 None:intergenic 35.0%
ATGGAACTCATAGCCAAATT+CGG - tig0024408:56671-56690 Msa1416850:CDS 35.0%
GATGAGATTTGTGAGACTAA+TGG + tig0024408:56699-56718 None:intergenic 35.0%
! TCAATAACCCTTTTGTTCCT+TGG - tig0024408:56765-56784 Msa1416850:CDS 35.0%
! CAATAACCCTTTTGTTCCTT+GGG - tig0024408:56766-56785 Msa1416850:CDS 35.0%
! TATATGGAGTAAAGGGTACA+AGG + tig0024408:56845-56864 None:intergenic 35.0%
ATAAAAGATGGAAGGTCTTG+TGG + tig0024408:56956-56975 None:intergenic 35.0%
! ACATCGGACATGGTTTTTAT+AGG + tig0024408:56992-57011 None:intergenic 35.0%
! ATTTTCCCAATTACACCTGT+AGG - tig0024408:57109-57128 Msa1416850:CDS 35.0%
GTAATGAAGGTGGAACTAAT+GGG + tig0024408:57135-57154 None:intergenic 35.0%
AGTAATGAAGGTGGAACTAA+TGG + tig0024408:57136-57155 None:intergenic 35.0%
TTAGTTCCACCTTCATTACT+AGG - tig0024408:57136-57155 Msa1416850:CDS 35.0%
TGATCTTGACCTAGTAATGA+AGG + tig0024408:57148-57167 None:intergenic 35.0%
CAAGATCAAAAACAAGACGT+TGG - tig0024408:57160-57179 Msa1416850:CDS 35.0%
AAGACGTTGGAATTGAAATG+TGG - tig0024408:57173-57192 Msa1416850:CDS 35.0%
GTGATGAAGAGTAAGGATAT+TGG - tig0024408:57346-57365 Msa1416850:CDS 35.0%
!! AGAAAGGATTGGTTGTTACA+TGG - tig0024408:57416-57435 Msa1416850:CDS 35.0%
! TGAACCAAAACCTTAGTTTG+TGG + tig0024408:57445-57464 None:intergenic 35.0%
CATTGTGGATAACCAATCAT+AGG + tig0024408:57538-57557 None:intergenic 35.0%
! CTATGATTGGTTATCCACAA+TGG - tig0024408:57536-57555 Msa1416850:CDS 35.0%
! GAAACAAGCATTGCATTTGT+TGG + tig0024408:57571-57590 None:intergenic 35.0%
! ATGTTTTTCGTATGGGGATT+CGG - tig0024408:57593-57612 Msa1416850:CDS 35.0%
AGAGCCATTGAAGAAATTGT+TGG - tig0024408:57661-57680 Msa1416850:CDS 35.0%
ACCTCCAACAATTTCTTCAA+TGG + tig0024408:57668-57687 None:intergenic 35.0%
AAGAAATTGTTGGAGGTGAA+AGG - tig0024408:57671-57690 Msa1416850:CDS 35.0%
ACCAGAAATTCATGTCCTAT+TGG - tig0024408:56412-56431 Msa1416850:CDS 35.0%
ACCAATAGGACATGAATTTC+TGG + tig0024408:56416-56435 None:intergenic 35.0%
GATTTGCCTAGTCTAAGTAA+AGG + tig0024408:56467-56486 None:intergenic 35.0%
CATTAAGGCCTTTGGTTAAA+AGG + tig0024408:56490-56509 None:intergenic 35.0%
TGTATTCATCAGGGGATTTA+AGG + tig0024408:56652-56671 None:intergenic 35.0%
TAAATCCCCTGATGAATACA+TGG - tig0024408:56652-56671 Msa1416850:CDS 35.0%
TGAGTTCCATGTATTCATCA+GGG + tig0024408:56661-56680 None:intergenic 35.0%
ATGAGTTCCATGTATTCATC+AGG + tig0024408:56662-56681 None:intergenic 35.0%
ATGGAACTCATAGCCAAATT+CGG - tig0024408:56671-56690 Msa1416850:CDS 35.0%
GATGAGATTTGTGAGACTAA+TGG + tig0024408:56699-56718 None:intergenic 35.0%
! TCAATAACCCTTTTGTTCCT+TGG - tig0024408:56765-56784 Msa1416850:CDS 35.0%
! CAATAACCCTTTTGTTCCTT+GGG - tig0024408:56766-56785 Msa1416850:CDS 35.0%
! TATATGGAGTAAAGGGTACA+AGG + tig0024408:56845-56864 None:intergenic 35.0%
ATAAAAGATGGAAGGTCTTG+TGG + tig0024408:56956-56975 None:intergenic 35.0%
! ACATCGGACATGGTTTTTAT+AGG + tig0024408:56992-57011 None:intergenic 35.0%
! ATTTTCCCAATTACACCTGT+AGG - tig0024408:57109-57128 Msa1416850:CDS 35.0%
GTAATGAAGGTGGAACTAAT+GGG + tig0024408:57135-57154 None:intergenic 35.0%
AGTAATGAAGGTGGAACTAA+TGG + tig0024408:57136-57155 None:intergenic 35.0%
TTAGTTCCACCTTCATTACT+AGG - tig0024408:57136-57155 Msa1416850:CDS 35.0%
TGATCTTGACCTAGTAATGA+AGG + tig0024408:57148-57167 None:intergenic 35.0%
CAAGATCAAAAACAAGACGT+TGG - tig0024408:57160-57179 Msa1416850:CDS 35.0%
AAGACGTTGGAATTGAAATG+TGG - tig0024408:57173-57192 Msa1416850:CDS 35.0%
GTGATGAAGAGTAAGGATAT+TGG - tig0024408:57346-57365 Msa1416850:CDS 35.0%
!! AGAAAGGATTGGTTGTTACA+TGG - tig0024408:57416-57435 Msa1416850:CDS 35.0%
! TGAACCAAAACCTTAGTTTG+TGG + tig0024408:57445-57464 None:intergenic 35.0%
CATTGTGGATAACCAATCAT+AGG + tig0024408:57538-57557 None:intergenic 35.0%
! CTATGATTGGTTATCCACAA+TGG - tig0024408:57536-57555 Msa1416850:CDS 35.0%
! GAAACAAGCATTGCATTTGT+TGG + tig0024408:57571-57590 None:intergenic 35.0%
! ATGTTTTTCGTATGGGGATT+CGG - tig0024408:57593-57612 Msa1416850:CDS 35.0%
AGAGCCATTGAAGAAATTGT+TGG - tig0024408:57661-57680 Msa1416850:CDS 35.0%
ACCTCCAACAATTTCTTCAA+TGG + tig0024408:57668-57687 None:intergenic 35.0%
AAGAAATTGTTGGAGGTGAA+AGG - tig0024408:57671-57690 Msa1416850:CDS 35.0%
GAGCTGAAAATGCAACCAAT+AGG + tig0024408:56430-56449 None:intergenic 40.0%
! TTGGTTGCATTTTCAGCTCA+AGG - tig0024408:56431-56450 Msa1416850:CDS 40.0%
! GGCAAATCCCTTTTAACCAA+AGG - tig0024408:56479-56498 Msa1416850:CDS 40.0%
AAGTGTGACATTAAGGCCTT+TGG + tig0024408:56498-56517 None:intergenic 40.0%
GTGGTAAACTAATTCAGTGG+TGG + tig0024408:56522-56541 None:intergenic 40.0%
ACGGTGGTAAACTAATTCAG+TGG + tig0024408:56525-56544 None:intergenic 40.0%
!! TGGTGGTTGATTTGAAGACA+CGG + tig0024408:56544-56563 None:intergenic 40.0%
CATTGGTAGAGTAAGAAGTG+GGG + tig0024408:56583-56602 None:intergenic 40.0%
CCATTGGTAGAGTAAGAAGT+GGG + tig0024408:56584-56603 None:intergenic 40.0%
TCCATTGGTAGAGTAAGAAG+TGG + tig0024408:56585-56604 None:intergenic 40.0%
!! AAACAGGACGTTGATTCCAT+TGG + tig0024408:56600-56619 None:intergenic 40.0%
GAGTTCCATGTATTCATCAG+GGG + tig0024408:56660-56679 None:intergenic 40.0%
TTGCTACCCAAGGAACAAAA+GGG + tig0024408:56775-56794 None:intergenic 40.0%
TTTGCTACCCAAGGAACAAA+AGG + tig0024408:56776-56795 None:intergenic 40.0%
ATATCCCATGTGCTTGTCTT+TGG - tig0024408:56813-56832 Msa1416850:CDS 40.0%
GAATCCAAAGACAAGCACAT+GGG + tig0024408:56820-56839 None:intergenic 40.0%
TGAATCCAAAGACAAGCACA+TGG + tig0024408:56821-56840 None:intergenic 40.0%
TTCAGCTAAAACATCGGACA+TGG + tig0024408:57002-57021 None:intergenic 40.0%
TCTTGACCTAGTAATGAAGG+TGG + tig0024408:57145-57164 None:intergenic 40.0%
CATTCCATGCAAGAATCTTG+TGG + tig0024408:57202-57221 None:intergenic 40.0%
CACAAGATTCTTGCATGGAA+TGG - tig0024408:57200-57219 Msa1416850:CDS 40.0%
!! TAACTGAAGATGGTGGCTTT+TGG + tig0024408:57231-57250 None:intergenic 40.0%
TACATGGTGTCCACAAACTA+AGG - tig0024408:57432-57451 Msa1416850:CDS 40.0%
! GTGTCCACAAACTAAGGTTT+TGG - tig0024408:57438-57457 Msa1416850:CDS 40.0%
GTTAAGAAACACGCTATTGC+AGG + tig0024408:57469-57488 None:intergenic 40.0%
GTTTCTTAACACACTGTGGA+TGG - tig0024408:57479-57498 Msa1416850:CDS 40.0%
CTGTGGATGGAATTCTACAT+TGG - tig0024408:57492-57511 Msa1416850:CDS 40.0%
GGTTGAAACAGGACAATGAT+GGG - tig0024408:57614-57633 Msa1416850:CDS 40.0%
GCCATTGAAGAAATTGTTGG+AGG - tig0024408:57664-57683 Msa1416850:CDS 40.0%
GAGCTGAAAATGCAACCAAT+AGG + tig0024408:56430-56449 None:intergenic 40.0%
! TTGGTTGCATTTTCAGCTCA+AGG - tig0024408:56431-56450 Msa1416850:CDS 40.0%
! GGCAAATCCCTTTTAACCAA+AGG - tig0024408:56479-56498 Msa1416850:CDS 40.0%
AAGTGTGACATTAAGGCCTT+TGG + tig0024408:56498-56517 None:intergenic 40.0%
GTGGTAAACTAATTCAGTGG+TGG + tig0024408:56522-56541 None:intergenic 40.0%
ACGGTGGTAAACTAATTCAG+TGG + tig0024408:56525-56544 None:intergenic 40.0%
!! TGGTGGTTGATTTGAAGACA+CGG + tig0024408:56544-56563 None:intergenic 40.0%
CATTGGTAGAGTAAGAAGTG+GGG + tig0024408:56583-56602 None:intergenic 40.0%
CCATTGGTAGAGTAAGAAGT+GGG + tig0024408:56584-56603 None:intergenic 40.0%
TCCATTGGTAGAGTAAGAAG+TGG + tig0024408:56585-56604 None:intergenic 40.0%
!! AAACAGGACGTTGATTCCAT+TGG + tig0024408:56600-56619 None:intergenic 40.0%
GAGTTCCATGTATTCATCAG+GGG + tig0024408:56660-56679 None:intergenic 40.0%
TTGCTACCCAAGGAACAAAA+GGG + tig0024408:56775-56794 None:intergenic 40.0%
TTTGCTACCCAAGGAACAAA+AGG + tig0024408:56776-56795 None:intergenic 40.0%
ATATCCCATGTGCTTGTCTT+TGG - tig0024408:56813-56832 Msa1416850:CDS 40.0%
GAATCCAAAGACAAGCACAT+GGG + tig0024408:56820-56839 None:intergenic 40.0%
TGAATCCAAAGACAAGCACA+TGG + tig0024408:56821-56840 None:intergenic 40.0%
TTCAGCTAAAACATCGGACA+TGG + tig0024408:57002-57021 None:intergenic 40.0%
TCTTGACCTAGTAATGAAGG+TGG + tig0024408:57145-57164 None:intergenic 40.0%
CATTCCATGCAAGAATCTTG+TGG + tig0024408:57202-57221 None:intergenic 40.0%
CACAAGATTCTTGCATGGAA+TGG - tig0024408:57200-57219 Msa1416850:CDS 40.0%
!! TAACTGAAGATGGTGGCTTT+TGG + tig0024408:57231-57250 None:intergenic 40.0%
TACATGGTGTCCACAAACTA+AGG - tig0024408:57432-57451 Msa1416850:CDS 40.0%
! GTGTCCACAAACTAAGGTTT+TGG - tig0024408:57438-57457 Msa1416850:CDS 40.0%
GTTAAGAAACACGCTATTGC+AGG + tig0024408:57469-57488 None:intergenic 40.0%
GTTTCTTAACACACTGTGGA+TGG - tig0024408:57479-57498 Msa1416850:CDS 40.0%
CTGTGGATGGAATTCTACAT+TGG - tig0024408:57492-57511 Msa1416850:CDS 40.0%
GGTTGAAACAGGACAATGAT+GGG - tig0024408:57614-57633 Msa1416850:CDS 40.0%
GCCATTGAAGAAATTGTTGG+AGG - tig0024408:57664-57683 Msa1416850:CDS 40.0%
TGGTGGCAAGTGTGACATTA+AGG + tig0024408:56505-56524 None:intergenic 45.0%
!! TGGTTGATTTGAAGACACGG+TGG + tig0024408:56541-56560 None:intergenic 45.0%
CCCACTTCTTACTCTACCAA+TGG - tig0024408:56581-56600 Msa1416850:CDS 45.0%
!! AACGTCCTGTTTTTCTCCGA+CGG - tig0024408:56608-56627 Msa1416850:CDS 45.0%
! ATCAGGGGATTTAAGGCCTT+GGG + tig0024408:56645-56664 None:intergenic 45.0%
GAGACTAATGGGACCGAATT+TGG + tig0024408:56687-56706 None:intergenic 45.0%
!!! GGTTTTCTAGGGTTGGAAAC+TGG + tig0024408:56892-56911 None:intergenic 45.0%
!!! ATTTCGGGGTTTTCTAGGGT+TGG + tig0024408:56899-56918 None:intergenic 45.0%
!! GTCGATTTCGGGGTTTTCTA+GGG + tig0024408:56903-56922 None:intergenic 45.0%
!! GTAATTCCACGTCGATTTCG+GGG + tig0024408:56913-56932 None:intergenic 45.0%
!! GGTAATTCCACGTCGATTTC+GGG + tig0024408:56914-56933 None:intergenic 45.0%
!! GGGTAATTCCACGTCGATTT+CGG + tig0024408:56915-56934 None:intergenic 45.0%
GAAATCGACGTGGAATTACC+CGG - tig0024408:56914-56933 Msa1416850:CDS 45.0%
TGGTTTCAGCAATGGAAGAC+CGG + tig0024408:56936-56955 None:intergenic 45.0%
! AGGTCTTGTGGTTTCAGCAA+TGG + tig0024408:56944-56963 None:intergenic 45.0%
ATGGGCCTACAGGTGTAATT+GGG + tig0024408:57117-57136 None:intergenic 45.0%
AATGGGCCTACAGGTGTAAT+TGG + tig0024408:57118-57137 None:intergenic 45.0%
TCTCTGGGTGATGAAGAGTA+AGG - tig0024408:57339-57358 Msa1416850:CDS 45.0%
GCGTGTTTCTTAACACACTG+TGG - tig0024408:57475-57494 Msa1416850:CDS 45.0%
ACATTGGAAGCTGTAACTGC+AGG - tig0024408:57508-57527 Msa1416850:CDS 45.0%
!! ACTGCAGGAGTACCTATGAT+TGG - tig0024408:57523-57542 Msa1416850:CDS 45.0%
GTTGGTTGATCAGTCCATTG+TGG + tig0024408:57553-57572 None:intergenic 45.0%
! TATGGGGATTCGGTTGAAAC+AGG - tig0024408:57603-57622 Msa1416850:CDS 45.0%
CGGTTGAAACAGGACAATGA+TGG - tig0024408:57613-57632 Msa1416850:CDS 45.0%
TGGTGGCAAGTGTGACATTA+AGG + tig0024408:56505-56524 None:intergenic 45.0%
!! TGGTTGATTTGAAGACACGG+TGG + tig0024408:56541-56560 None:intergenic 45.0%
CCCACTTCTTACTCTACCAA+TGG - tig0024408:56581-56600 Msa1416850:CDS 45.0%
!! AACGTCCTGTTTTTCTCCGA+CGG - tig0024408:56608-56627 Msa1416850:CDS 45.0%
! ATCAGGGGATTTAAGGCCTT+GGG + tig0024408:56645-56664 None:intergenic 45.0%
GAGACTAATGGGACCGAATT+TGG + tig0024408:56687-56706 None:intergenic 45.0%
!!! GGTTTTCTAGGGTTGGAAAC+TGG + tig0024408:56892-56911 None:intergenic 45.0%
!!! ATTTCGGGGTTTTCTAGGGT+TGG + tig0024408:56899-56918 None:intergenic 45.0%
!! GTCGATTTCGGGGTTTTCTA+GGG + tig0024408:56903-56922 None:intergenic 45.0%
!! GTAATTCCACGTCGATTTCG+GGG + tig0024408:56913-56932 None:intergenic 45.0%
!! GGTAATTCCACGTCGATTTC+GGG + tig0024408:56914-56933 None:intergenic 45.0%
!! GGGTAATTCCACGTCGATTT+CGG + tig0024408:56915-56934 None:intergenic 45.0%
GAAATCGACGTGGAATTACC+CGG - tig0024408:56914-56933 Msa1416850:CDS 45.0%
TGGTTTCAGCAATGGAAGAC+CGG + tig0024408:56936-56955 None:intergenic 45.0%
! AGGTCTTGTGGTTTCAGCAA+TGG + tig0024408:56944-56963 None:intergenic 45.0%
ATGGGCCTACAGGTGTAATT+GGG + tig0024408:57117-57136 None:intergenic 45.0%
AATGGGCCTACAGGTGTAAT+TGG + tig0024408:57118-57137 None:intergenic 45.0%
TCTCTGGGTGATGAAGAGTA+AGG - tig0024408:57339-57358 Msa1416850:CDS 45.0%
GCGTGTTTCTTAACACACTG+TGG - tig0024408:57475-57494 Msa1416850:CDS 45.0%
ACATTGGAAGCTGTAACTGC+AGG - tig0024408:57508-57527 Msa1416850:CDS 45.0%
!! ACTGCAGGAGTACCTATGAT+TGG - tig0024408:57523-57542 Msa1416850:CDS 45.0%
GTTGGTTGATCAGTCCATTG+TGG + tig0024408:57553-57572 None:intergenic 45.0%
! TATGGGGATTCGGTTGAAAC+AGG - tig0024408:57603-57622 Msa1416850:CDS 45.0%
CGGTTGAAACAGGACAATGA+TGG - tig0024408:57613-57632 Msa1416850:CDS 45.0%
GGTAGAGTAAGAAGTGGGGA+CGG + tig0024408:56579-56598 None:intergenic 50.0%
TTGGGATATGTCGAAGCCGT+CGG + tig0024408:56627-56646 None:intergenic 50.0%
! CATCAGGGGATTTAAGGCCT+TGG + tig0024408:56646-56665 None:intergenic 50.0%
TGTTCCTTGGGTAGCAAACG+TGG - tig0024408:56778-56797 Msa1416850:CDS 50.0%
! TAAGCCACGTTTGCTACCCA+AGG + tig0024408:56785-56804 None:intergenic 50.0%
!!! CGTCGATTTCGGGGTTTTCT+AGG + tig0024408:56904-56923 None:intergenic 50.0%
AGAAAACCCCGAAATCGACG+TGG - tig0024408:56904-56923 Msa1416850:CDS 50.0%
GGTTTCAGCAATGGAAGACC+GGG + tig0024408:56935-56954 None:intergenic 50.0%
GACGCCACAAGATTCTTGCA+TGG - tig0024408:57195-57214 Msa1416850:CDS 50.0%
TGCGTTGGAGCTGAAACATG+CGG - tig0024408:57714-57733 Msa1416850:CDS 50.0%
GGTAGAGTAAGAAGTGGGGA+CGG + tig0024408:56579-56598 None:intergenic 50.0%
TTGGGATATGTCGAAGCCGT+CGG + tig0024408:56627-56646 None:intergenic 50.0%
! CATCAGGGGATTTAAGGCCT+TGG + tig0024408:56646-56665 None:intergenic 50.0%
TGTTCCTTGGGTAGCAAACG+TGG - tig0024408:56778-56797 Msa1416850:CDS 50.0%
! TAAGCCACGTTTGCTACCCA+AGG + tig0024408:56785-56804 None:intergenic 50.0%
!!! CGTCGATTTCGGGGTTTTCT+AGG + tig0024408:56904-56923 None:intergenic 50.0%
AGAAAACCCCGAAATCGACG+TGG - tig0024408:56904-56923 Msa1416850:CDS 50.0%
GGTTTCAGCAATGGAAGACC+GGG + tig0024408:56935-56954 None:intergenic 50.0%
GACGCCACAAGATTCTTGCA+TGG - tig0024408:57195-57214 Msa1416850:CDS 50.0%
TGCGTTGGAGCTGAAACATG+CGG - tig0024408:57714-57733 Msa1416850:CDS 50.0%
CGAAGCCGTCGGAGAAAAAC+AGG + tig0024408:56616-56635 None:intergenic 55.0%
GACGGCTTCGACATATCCCA+AGG - tig0024408:56626-56645 Msa1416850:CDS 55.0%
! GGTGGAACTAATGGGCCTAC+AGG + tig0024408:57127-57146 None:intergenic 55.0%
!! CTGATGGTGGCTCTTCTGAG+AGG - tig0024408:57752-57771 Msa1416850:CDS 55.0%
CGAAGCCGTCGGAGAAAAAC+AGG + tig0024408:56616-56635 None:intergenic 55.0%
GACGGCTTCGACATATCCCA+AGG - tig0024408:56626-56645 Msa1416850:CDS 55.0%
! GGTGGAACTAATGGGCCTAC+AGG + tig0024408:57127-57146 None:intergenic 55.0%
!! CTGATGGTGGCTCTTCTGAG+AGG - tig0024408:57752-57771 Msa1416850:CDS 55.0%
GACGGTGTCTGTGTCTGTGG+TGG + tig0024408:56561-56580 None:intergenic 60.0%
TGGAGCTGAAACATGCGGCG+AGG - tig0024408:57719-57738 Msa1416850:CDS 60.0%
GGAGCTGAAACATGCGGCGA+GGG - tig0024408:57720-57739 Msa1416850:CDS 60.0%
GACGGTGTCTGTGTCTGTGG+TGG + tig0024408:56561-56580 None:intergenic 60.0%
TGGAGCTGAAACATGCGGCG+AGG - tig0024408:57719-57738 Msa1416850:CDS 60.0%
GGAGCTGAAACATGCGGCGA+GGG - tig0024408:57720-57739 Msa1416850:CDS 60.0%
GGGGACGGTGTCTGTGTCTG+TGG + tig0024408:56564-56583 None:intergenic 65.0%
GCTGAAACATGCGGCGAGGG+AGG - tig0024408:57723-57742 Msa1416850:CDS 65.0%
GAAACATGCGGCGAGGGAGG+CGG - tig0024408:57726-57745 Msa1416850:CDS 65.0%
GGGGACGGTGTCTGTGTCTG+TGG + tig0024408:56564-56583 None:intergenic 65.0%
GCTGAAACATGCGGCGAGGG+AGG - tig0024408:57723-57742 Msa1416850:CDS 65.0%
GAAACATGCGGCGAGGGAGG+CGG - tig0024408:57726-57745 Msa1416850:CDS 65.0%
AGGGAGGCGGTGGCTGATGG+TGG - tig0024408:57739-57758 Msa1416850:CDS 70.0%
AGGGAGGCGGTGGCTGATGG+TGG - tig0024408:57739-57758 Msa1416850:CDS 70.0%
ACATGCGGCGAGGGAGGCGG+TGG - tig0024408:57729-57748 Msa1416850:CDS 75.0%
GCGAGGGAGGCGGTGGCTGA+TGG - tig0024408:57736-57755 Msa1416850:CDS 75.0%
ACATGCGGCGAGGGAGGCGG+TGG - tig0024408:57729-57748 Msa1416850:CDS 75.0%
GCGAGGGAGGCGGTGGCTGA+TGG - tig0024408:57736-57755 Msa1416850:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0024408 gene 56386 57831 56386 ID=Msa1416850;Name=Msa1416850
tig0024408 mRNA 56386 57831 56386 ID=Msa1416850-mRNA-1;Parent=Msa1416850;Name=Msa1416850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|481
tig0024408 exon 56386 57831 56386 ID=Msa1416850-mRNA-1:exon:23079;Parent=Msa1416850-mRNA-1
tig0024408 CDS 56386 57831 56386 ID=Msa1416850-mRNA-1:cds;Parent=Msa1416850-mRNA-1
Gene Sequence

>Msa1416850

ATGGCTTCAGAAGACACAAAAATCAAACCAGAAATTCATGTCCTATTGGTTGCATTTTCAGCTCAAGGTCACATAAACCCTTTACTTAGACTAGGCAAATCCCTTTTAACCAAAGGCCTTAATGTCACACTTGCCACCACTGAATTAGTTTACCACCGTGTCTTCAAATCAACCACCACAGACACAGACACCGTCCCCACTTCTTACTCTACCAATGGAATCAACGTCCTGTTTTTCTCCGACGGCTTCGACATATCCCAAGGCCTTAAATCCCCTGATGAATACATGGAACTCATAGCCAAATTCGGTCCCATTAGTCTCACAAATCTCATCAAAAACAATTTCATCAACAACCCTTCCAAAAAATTAGCTTGCATTATCAATAACCCTTTTGTTCCTTGGGTAGCAAACGTGGCTTATGAATTCAATATCCCATGTGCTTGTCTTTGGATTCAACCTTGTACCCTTTACTCCATATACTATCGTTTCTACAACGAACTCAACCAGTTTCCAACCCTAGAAAACCCCGAAATCGACGTGGAATTACCCGGTCTTCCATTGCTGAAACCACAAGACCTTCCATCTTTTATTCTTCCATCAAATCCTATAAAAACCATGTCCGATGTTTTAGCTGAAATGTTCCAAGACATGAAGAAACTGAAATGGGTATTAGCAAATTCTTTCTACGAATTGGAAAAAGATGTCATTGATTCAATGGCTGAGATTTTCCCAATTACACCTGTAGGCCCATTAGTTCCACCTTCATTACTAGGTCAAGATCAAAAACAAGACGTTGGAATTGAAATGTGGACGCCACAAGATTCTTGCATGGAATGGCTTAACCAAAAGCCACCATCTTCAGTTATATATATTTCATTCGGAAGTCTCATCTTTTTATCAGAAAAACAAATGCAAAGCATAGCAAATGCATTGAAAAACAGTAACAAATATTTTCTCTGGGTGATGAAGAGTAAGGATATTGGAAATGAAAAAGTTCAGCTTTCTGAAAAATTCTTAGAAGAAACAAAAGAGAAAGGATTGGTTGTTACATGGTGTCCACAAACTAAGGTTTTGGTTCATCCTGCAATAGCGTGTTTCTTAACACACTGTGGATGGAATTCTACATTGGAAGCTGTAACTGCAGGAGTACCTATGATTGGTTATCCACAATGGACTGATCAACCAACAAATGCAATGCTTGTTTCTGATGTTTTTCGTATGGGGATTCGGTTGAAACAGGACAATGATGGGTTTGTTGAAAGTGATGAAGTTGAAAGAGCCATTGAAGAAATTGTTGGAGGTGAAAGGTCTGAAGTGTTTAAGAAAAATGCGTTGGAGCTGAAACATGCGGCGAGGGAGGCGGTGGCTGATGGTGGCTCTTCTGAGAGGAATATACAAAGATTCGTTGATGAAGTTCTTGTCAGTGCAATTCATAGTAATAATTGA
Protein sequence

>Msa1416850

MASEDTKIKPEIHVLLVAFSAQGHINPLLRLGKSLLTKGLNVTLATTELVYHRVFKSTTTDTDTVPTSYSTNGINVLFFSDGFDISQGLKSPDEYMELIAKFGPISLTNLIKNNFINNPSKKLACIINNPFVPWVANVAYEFNIPCACLWIQPCTLYSIYYRFYNELNQFPTLENPEIDVELPGLPLLKPQDLPSFILPSNPIKTMSDVLAEMFQDMKKLKWVLANSFYELEKDVIDSMAEIFPITPVGPLVPPSLLGQDQKQDVGIEMWTPQDSCMEWLNQKPPSSVIYISFGSLIFLSEKQMQSIANALKNSNKYFLWVMKSKDIGNEKVQLSEKFLEETKEKGLVVTWCPQTKVLVHPAIACFLTHCGWNSTLEAVTAGVPMIGYPQWTDQPTNAMLVSDVFRMGIRLKQDNDGFVESDEVERAIEEIVGGERSEVFKKNALELKHAAREAVADGGSSERNIQRFVDEVLVSAIHSNN*