AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298590 MtrunA17_Chr2g0322351 96.415 530 18 1 1 529 1 530 0.0 1070
Msa0298590 MtrunA17_Chr4g0025201 62.970 532 188 5 1 529 1 526 0.0 684
Msa0298590 MtrunA17_Chr2g0322361 60.521 537 199 7 1 528 1 533 0.0 650
Msa0298590 MtrunA17_Chr2g0322371 61.205 531 195 6 1 528 1 523 0.0 646
Msa0298590 MtrunA17_Chr2g0322341 75.216 347 80 4 1 343 3 347 0.0 520
Msa0298590 MtrunA17_Chr8g0364641 36.049 577 315 11 1 529 182 752 5.39e-108 345
Msa0298590 MtrunA17_Chr3g0102541 37.311 528 290 11 1 513 1 502 6.17e-108 339
Msa0298590 MtrunA17_Chr8g0379241 37.213 567 292 14 7 514 185 746 1.35e-106 342
Msa0298590 MtrunA17_Chr1g0201731 36.301 584 292 13 8 514 275 855 1.80e-106 343
Msa0298590 MtrunA17_Chr3g0102531 36.981 530 288 11 1 513 1 501 2.11e-106 335
Msa0298590 MtrunA17_Chr3g0088821 35.763 590 298 12 21 534 271 855 4.17e-106 342
Msa0298590 MtrunA17_Chr4g0073711 35.980 592 318 13 1 534 228 816 1.51e-105 340
Msa0298590 MtrunA17_Chr4g0046401 36.194 536 306 10 2 523 3 516 6.06e-105 331
Msa0298590 MtrunA17_Chr2g0284211 35.777 573 301 13 21 529 181 750 3.33e-104 335
Msa0298590 MtrunA17_Chr8g0383701 35.644 606 305 14 1 526 266 866 2.05e-103 335
Msa0298590 MtrunA17_Chr8g0352231 35.813 578 290 12 33 534 283 855 5.50e-103 334
Msa0298590 MtrunA17_Chr7g0267731 34.494 603 313 14 8 534 167 763 6.86e-102 329
Msa0298590 MtrunA17_Chr1g0183381 35.640 578 310 14 8 529 107 678 1.10e-101 327
Msa0298590 MtrunA17_Chr3g0137951 34.805 589 306 12 7 523 270 852 1.51e-101 330
Msa0298590 MtrunA17_Chr3g0078671 34.820 583 302 14 21 528 238 817 2.33e-101 329
Msa0298590 MtrunA17_Chr3g0102551 37.097 496 262 9 49 529 62 522 4.47e-101 322
Msa0298590 MtrunA17_Chr1g0186381 37.288 472 274 6 47 515 58 510 4.37e-98 313
Msa0298590 MtrunA17_Chr2g0298581 35.341 498 293 8 20 514 18 489 1.14e-94 303
Msa0298590 MtrunA17_Chr1g0165421 33.122 631 297 14 21 527 275 904 2.53e-93 308
Msa0298590 MtrunA17_Chr3g0095791 35.471 499 288 10 21 514 19 488 5.76e-93 299
Msa0298590 MtrunA17_Chr2g0307191 35.700 493 286 10 26 514 24 489 7.67e-93 298
Msa0298590 MtrunA17_Chr5g0410641 32.459 610 290 13 28 516 275 883 7.96e-93 307
Msa0298590 MtrunA17_Chr3g0077511 35.329 501 289 10 20 514 18 489 8.92e-93 298
Msa0298590 MtrunA17_Chr1g0165411 32.911 632 306 15 8 527 251 876 3.04e-92 305
Msa0298590 MtrunA17_Chr4g0039801 31.929 617 298 13 21 516 289 904 6.94e-90 299
Msa0298590 MtrunA17_Chr7g0269741 31.129 620 302 14 21 516 313 931 3.03e-85 287
Msa0298590 MtrunA17_Chr7g0274751 31.937 573 284 13 28 516 119 669 6.41e-81 270
Msa0298590 MtrunA17_Chr2g0296991 38.974 390 215 9 8 376 206 593 5.57e-79 268
Msa0298590 MtrunA17_Chr2g0296991 38.571 140 84 1 394 533 684 821 3.25e-20 95.1
Msa0298590 MtrunA17_Chr2g0322331 64.848 165 49 3 371 528 1 163 3.34e-64 214
Msa0298590 MtrunA17_Chr2g0297351 33.639 327 168 8 248 529 475 797 1.50e-43 166
Msa0298590 MtrunA17_Chr2g0297351 34.934 229 130 4 21 235 175 398 2.97e-36 144
Msa0298590 MtrunA17_Chr2g0307241 42.683 164 88 3 26 187 24 183 3.37e-34 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298590 AT2G32530.1 50.187 534 244 8 8 529 10 533 1.68e-177 520
Msa0298590 AT2G32620.3 49.438 534 248 8 8 529 10 533 1.50e-174 507
Msa0298590 AT2G32620.1 49.438 534 248 8 8 529 10 533 1.23e-172 507
Msa0298590 AT2G32540.1 50.556 540 244 9 3 529 4 533 6.44e-172 505
Msa0298590 AT2G32620.2 49.520 521 241 8 8 516 10 520 9.71e-171 495
Msa0298590 AT4G15320.5 47.778 540 258 10 2 529 4 531 3.81e-168 496
Msa0298590 AT4G15320.3 48.148 540 256 11 2 529 4 531 4.25e-168 496
Msa0298590 AT4G15320.4 46.847 555 256 12 2 529 4 546 9.16e-165 488
Msa0298590 AT4G15290.1 49.493 493 226 9 49 529 51 532 4.04e-164 485
Msa0298590 AT2G32610.1 47.004 534 262 8 8 529 10 534 2.34e-160 476
Msa0298590 AT4G15320.2 44.406 581 253 11 7 529 9 577 6.02e-160 476
Msa0298590 AT4G15320.1 41.346 624 253 13 7 529 9 620 1.60e-150 452
Msa0298590 AT2G32620.4 50.112 447 201 8 95 529 1 437 1.04e-147 440
Msa0298590 AT1G55850.1 42.593 486 219 9 49 521 66 504 9.35e-112 349
Msa0298590 AT5G09870.1 36.184 608 301 14 1 528 241 841 3.93e-111 356
Msa0298590 AT5G64740.1 36.482 614 294 16 1 528 253 856 1.87e-108 349
Msa0298590 AT5G17420.1 37.719 570 296 15 21 534 238 804 6.12e-108 347
Msa0298590 AT5G05170.1 35.823 589 298 10 21 534 259 842 9.24e-107 344
Msa0298590 AT4G18780.1 36.145 581 301 12 16 529 179 756 9.76e-106 340
Msa0298590 AT4G32410.1 34.992 603 316 14 1 529 252 852 3.27e-104 337
Msa0298590 AT2G21770.1 35.158 603 310 13 1 526 259 857 1.34e-102 333
Msa0298590 AT4G39350.1 35.041 605 309 15 1 526 254 853 2.51e-102 332
Msa0298590 AT2G25540.1 35.862 580 293 13 26 529 256 832 6.44e-102 331
Msa0298590 AT4G24010.1 38.116 467 247 8 59 513 67 503 8.10e-99 316
Msa0298590 AT4G23990.1 39.093 463 248 10 59 513 86 522 8.21e-97 311
Msa0298590 AT4G24000.1 39.083 458 246 10 60 513 65 493 6.63e-96 308
Msa0298590 AT1G02730.1 31.654 635 300 15 21 524 318 949 5.61e-87 292
Msa0298590 AT3G03050.1 32.033 615 298 14 21 516 294 907 1.77e-86 290
Msa0298590 AT4G38190.1 31.200 625 322 15 7 529 261 879 1.82e-86 290
Msa0298590 AT1G32180.1 30.596 621 298 14 21 512 122 738 4.09e-85 284
Msa0298590 AT1G32180.2 30.596 621 298 14 21 512 122 738 4.09e-85 284
Msa0298590 AT5G16910.1 31.209 612 304 14 21 516 297 907 3.62e-84 284
Msa0298590 AT5G44030.1 38.945 398 220 9 8 384 199 594 8.44e-82 276
Msa0298590 AT5G44030.1 38.686 137 82 1 393 529 686 820 1.53e-20 96.7
Msa0298590 AT5G44030.2 38.945 398 220 9 8 384 228 623 1.58e-81 276
Msa0298590 AT5G44030.2 38.686 137 82 1 393 529 715 849 1.48e-20 96.7
Msa0298590 AT2G33100.2 29.403 636 320 15 12 524 177 806 6.19e-78 265
Msa0298590 AT2G33100.1 29.403 636 320 15 12 524 177 806 6.19e-78 265
Msa0298590 AT5G44030.3 42.258 310 165 7 87 385 9 315 4.48e-69 237
Msa0298590 AT5G44030.3 38.971 136 81 1 394 529 408 541 1.15e-20 96.7
Msa0298590 AT4G24000.2 38.110 328 172 9 188 513 3 301 1.79e-57 201
Msa0298590 AT4G23990.2 38.138 333 172 10 188 513 3 308 7.89e-57 199

Find 136 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCCTTCTCTTGCTTCT+TGG 0.111713 2_3:-52663611 Msa0298590:CDS
ACCAGATCCATTGGCCTTTA+TGG 0.113431 2_3:-52658926 Msa0298590:CDS
TTACCAATACACCTTCTTTA+TGG 0.127586 2_3:+52663757 None:intergenic
CATAGAAGAAAAGTAATTTA+TGG 0.180281 2_3:-52660090 Msa0298590:CDS
TTAGAGATGGAAGTGGTATT+TGG 0.235169 2_3:-52659387 Msa0298590:intron
CTTTGTGTTGGCAGGTGATA+TGG 0.235236 2_3:-52661180 Msa0298590:intron
AACCAATCTTGATAAAATTC+TGG 0.248631 2_3:+52662756 None:intergenic
CTTGATATGTACCTTGATTA+TGG 0.259632 2_3:+52662197 None:intergenic
CCAGATCCATTGGCCTTTAT+GGG 0.260820 2_3:-52658925 Msa0298590:CDS
GGCTTCCACAAGGGCATAAA+AGG 0.275827 2_3:+52662890 None:intergenic
AAGAAACGCCACTACAAAAT+TGG 0.280761 2_3:-52658165 Msa0298590:CDS
CCAAAGCTTAGCAAATTTAG+AGG 0.286325 2_3:+52662869 None:intergenic
TGCTTGTTTGTCATAGTAAC+TGG 0.287590 2_3:+52658125 Msa0298580:intron
ACATTGTATTTCTTACAAAA+AGG 0.291470 2_3:+52662843 None:intergenic
AGTCATGGTTCACCTTCATT+TGG 0.300180 2_3:-52663529 Msa0298590:CDS
CCTCTAAATTTGCTAAGCTT+TGG 0.311164 2_3:-52662869 Msa0298590:CDS
CTCTAAATTTGCTAAGCTTT+GGG 0.314210 2_3:-52662868 Msa0298590:CDS
GGGCTAAAAGACGATCCTTT+TGG 0.322218 2_3:-52660437 Msa0298590:CDS
ATATTAGATGAGAATTTCTA+TGG 0.324299 2_3:+52663826 None:intergenic
TTACTAGATGAGAATTTCTA+TGG 0.335545 2_3:+52663895 None:intergenic
TCATCACAAAAGTACCTAAA+AGG 0.337321 2_3:+52662807 None:intergenic
GCTAGTTGCACATATGAATA+TGG 0.351563 2_3:-52659261 Msa0298590:CDS
GTCATGGTTCACCTTCATTT+GGG 0.372598 2_3:-52663528 Msa0298590:CDS
ACGTCGGAGGATGTACTTAC+TGG 0.377151 2_3:-52658991 Msa0298590:CDS
TAGCCCATCATAGAATTGTT+GGG 0.385848 2_3:+52660454 None:intergenic
AACAAGGAAAATCTTCTAGA+TGG 0.388558 2_3:-52661154 Msa0298590:CDS
TATTAGGTGGGTTGGATGTA+TGG 0.390205 2_3:-52659018 Msa0298590:intron
CAAAATCCACTTCCTCTTGT+AGG 0.396542 2_3:-52662264 Msa0298590:CDS
TCAAGATTGGTTAAGAATGA+AGG 0.396673 2_3:-52662745 Msa0298590:intron
TGAATCAGCTACTCATGCTT+TGG 0.404609 2_3:-52659346 Msa0298590:CDS
AAGGCGTGTAGAGCAATCTT+AGG 0.404777 2_3:+52660530 None:intergenic
CCCATAAAGGCCAATGGATC+TGG 0.407916 2_3:+52658925 None:intergenic
TCTCATCTAATATAAGAGTT+AGG 0.409116 2_3:-52663816 Msa0298590:five_prime_UTR
CTTTATTTGCAGGAGGAATA+CGG 0.409429 2_3:-52662318 Msa0298590:intron
TTGAGGTGAGCAACCCATAA+AGG 0.418402 2_3:+52658912 None:intergenic
CATATGAATATGGCACTACC+TGG 0.424657 2_3:-52659251 Msa0298590:CDS
GGAGGGTTTGGAGGACTTCA+AGG 0.426521 2_3:-52660141 Msa0298590:CDS
GAGACGGTCTAGGTGGGTTA+TGG 0.429322 2_3:+52663469 None:intergenic
GTTAGATTCAAAAGGGGAAA+AGG 0.430851 2_3:-52660498 Msa0298590:CDS
CTTCAATTTAGAGAGGCTCT+TGG 0.431777 2_3:-52658787 Msa0298590:CDS
GGTATATGCAGGACTCCATT+TGG 0.432589 2_3:+52663490 None:intergenic
TTGCATTTCTTTGTGAGTCA+TGG 0.435437 2_3:-52663544 Msa0298590:CDS
TTGGTCTTATTATAAATGTA+TGG 0.438331 2_3:-52663868 Msa0298590:five_prime_UTR
TAGGTCTTATTATAAATGTA+TGG 0.443168 2_3:-52663797 Msa0298590:five_prime_UTR
AGAAATTCTCATCTAGTAAG+AGG 0.444294 2_3:-52663891 Msa0298590:five_prime_UTR
AATCTAAGTTCAAGATGAAA+GGG 0.446394 2_3:+52660573 None:intergenic
GCATGCTATGTTTCTGATGA+TGG 0.451291 2_3:-52662927 Msa0298590:CDS
TTCAATTTAGAGAGGCTCTT+GGG 0.453068 2_3:-52658786 Msa0298590:intron
TTAGCCCATCATAGAATTGT+TGG 0.455960 2_3:+52660453 None:intergenic
TGGCACTACCTGGGGCAAAC+AGG 0.462432 2_3:-52659241 Msa0298590:intron
AATTGTTGATATATAAAATA+CGG 0.468079 2_3:+52663585 None:intergenic
ACCTAGACCGTCTCTTGCTC+AGG 0.472803 2_3:-52663460 Msa0298590:intron
AATGAACAGACAAGAGTCTC+TGG 0.476601 2_3:-52660611 Msa0298590:intron
CAACCATAAAGAAGGTGTAT+TGG 0.479605 2_3:-52663760 Msa0298590:five_prime_UTR
TGACATTCAAAATAGAAAGA+AGG 0.480035 2_3:-52660052 Msa0298590:CDS
GTTGCTCACCTGTTTGCCCC+AGG 0.481439 2_3:+52659233 None:intergenic
TCAACAATTATCCCTTCCCT+TGG 0.482011 2_3:-52663571 Msa0298590:CDS
TGTCCCCAACAATTCTATGA+TGG 0.482390 2_3:-52660458 Msa0298590:CDS
CCAACAGAAAAGATGGGCCT+CGG 0.483981 2_3:-52658869 Msa0298590:CDS
GTGTTACAAAGGTTATCAAT+AGG 0.485467 2_3:+52659306 None:intergenic
GTATGATCCAACAGAAAAGA+TGG 0.488519 2_3:-52658876 Msa0298590:CDS
TCAGCTCGTGGCATTGTTTG+TGG 0.488717 2_3:-52660411 Msa0298590:intron
GAATACAGTGTTGTCATTGT+TGG 0.488821 2_3:-52662976 Msa0298590:CDS
CAACAGAAAAGATGGGCCTC+GGG 0.496023 2_3:-52658868 Msa0298590:CDS
TTTGTGTTGGCAGGTGATAT+GGG 0.498610 2_3:-52661179 Msa0298590:intron
GGAACATGAGCTTCCAGCAT+TGG 0.500405 2_3:-52663051 Msa0298590:CDS
CAATCTAAGTTCAAGATGAA+AGG 0.500519 2_3:+52660572 None:intergenic
TAGCATGCTAGCTTGTTAGC+TGG 0.502258 2_3:+52662942 None:intergenic
ATGATTGGTGGTTCTAGCAC+TGG 0.507268 2_3:+52663005 None:intergenic
GTCACAAACAAGTCCAATGC+TGG 0.507383 2_3:+52663038 None:intergenic
TCTTATTATAAATGTATGGC+AGG 0.511055 2_3:-52663793 Msa0298590:five_prime_UTR
GACATTCAAAATAGAAAGAA+GGG 0.514197 2_3:-52660051 Msa0298590:CDS
ACAAGGGCATAAAAGGTAAG+AGG 0.515984 2_3:+52662897 None:intergenic
AACTCTCCTACAAGAGGAAG+TGG 0.516770 2_3:+52662258 None:intergenic
TTTATTTGCAGGAGGAATAC+GGG 0.517490 2_3:-52662317 Msa0298590:intron
AAATCATTCAACCATAATCA+AGG 0.521264 2_3:-52662208 Msa0298590:intron
TTGTCACCATGAGCACCAAA+TGG 0.524190 2_3:-52663505 Msa0298590:CDS
GTATTCACTGTGATGATTGG+TGG 0.530639 2_3:+52662993 None:intergenic
GTCCCCAACAATTCTATGAT+GGG 0.536384 2_3:-52660457 Msa0298590:CDS
CGTCGGAGGATGTACTTACT+GGG 0.541544 2_3:-52658990 Msa0298590:CDS
ACTGTATTCACTGTGATGAT+TGG 0.542353 2_3:+52662990 None:intergenic
AGCCCATCATAGAATTGTTG+GGG 0.545209 2_3:+52660455 None:intergenic
AGGTGGGTTATGGTATATGC+AGG 0.545615 2_3:+52663479 None:intergenic
ATATGAATATGGCACTACCT+GGG 0.547389 2_3:-52659250 Msa0298590:CDS
AATGTGTTCACCAGATCCAT+TGG 0.559636 2_3:-52658935 Msa0298590:CDS
ATACTTACTATGTTATCTTG+AGG 0.560218 2_3:+52658895 None:intergenic
AGGACTCCATTTGGTGCTCA+TGG 0.563071 2_3:+52663499 None:intergenic
GCCACGAGCTGATTTCCAAA+AGG 0.563923 2_3:+52660422 None:intergenic
AGATCATCCGCATCAATACA+AGG 0.567327 2_3:-52661092 Msa0298590:CDS
ATTCTCATCTAGTAAGAGGT+TGG 0.572454 2_3:-52663887 Msa0298590:five_prime_UTR
ATGAGTTGCAACCATAAAGA+AGG 0.572881 2_3:-52663768 Msa0298590:five_prime_UTR
ACCTGAGCAAGAGACGGTCT+AGG 0.574024 2_3:+52663459 None:intergenic
CAAAGAAATGCAACAAACCA+AGG 0.575666 2_3:+52663554 None:intergenic
CAGCCTCAAGAGTGTTACAA+AGG 0.575829 2_3:+52659295 None:intergenic
CATCCGCATCAATACAAGGC+TGG 0.577862 2_3:-52661088 Msa0298590:CDS
CTTCAAGGGATGCTATATGC+AGG 0.580072 2_3:-52660126 Msa0298590:CDS
TTCTCTGTTTGAGTTCAACA+TGG 0.582105 2_3:-52663714 Msa0298590:exon
TAACCTTTGTAACACTCTTG+AGG 0.582470 2_3:-52659298 Msa0298590:CDS
ATTGGACTTGTTTGTGACAA+CGG 0.583368 2_3:-52663033 Msa0298590:CDS
TATGATCCAACAGAAAAGAT+GGG 0.590541 2_3:-52658875 Msa0298590:CDS
AAATGCAACAAACCAAGGGA+AGG 0.591687 2_3:+52663559 None:intergenic
GGAGGATGTACTTACTGGGT+TGG 0.591734 2_3:-52658986 Msa0298590:CDS
TCAGCTACTCATGCTTTGGA+AGG 0.592900 2_3:-52659342 Msa0298590:CDS
TTTGTCCAATATAGTACTTG+GGG 0.593998 2_3:-52660164 Msa0298590:intron
GAGGGTTTGGAGGACTTCAA+GGG 0.594034 2_3:-52660140 Msa0298590:CDS
GAACTCAAACAGAGAAAACA+AGG 0.596069 2_3:+52663721 None:intergenic
ATAGCGAACTCTCCTACAAG+AGG 0.596464 2_3:+52662252 None:intergenic
TGGACATTCATACAAGAGGA+TGG 0.599249 2_3:-52658966 Msa0298590:CDS
GAATGTCATGATCAGGACAA+AGG 0.600011 2_3:+52660067 None:intergenic
CAAATTTAGAGGCTTCCACA+AGG 0.601362 2_3:+52662880 None:intergenic
CATGGTGACAACCCAAATGA+AGG 0.605226 2_3:+52663517 None:intergenic
GAGCAACCCATAAAGGCCAA+TGG 0.606456 2_3:+52658919 None:intergenic
TGGTAAGCTTCAATTTAGAG+AGG 0.615471 2_3:-52658794 Msa0298590:CDS
GAGAAGGAAGAGCAAAGTGA+AGG 0.620280 2_3:+52663622 None:intergenic
GCAGGTGATATGGGAGAACA+AGG 0.622886 2_3:-52661170 Msa0298590:intron
GGTAACCAAGAAGCAAGAGA+AGG 0.623101 2_3:+52663606 None:intergenic
GGGTTGGACATTCATACAAG+AGG 0.630359 2_3:-52658970 Msa0298590:CDS
TGTCCAATATAGTACTTGGG+GGG 0.637223 2_3:-52660162 Msa0298590:intron
TGAGCAAGAGACGGTCTAGG+TGG 0.637301 2_3:+52663462 None:intergenic
AATGCAACAAACCAAGGGAA+GGG 0.637404 2_3:+52663560 None:intergenic
CTAGATATGTAGATTATGTG+AGG 0.637541 2_3:+52661127 None:intergenic
AAATTTAGAGGCTTCCACAA+GGG 0.639116 2_3:+52662881 None:intergenic
TTGTCCAATATAGTACTTGG+GGG 0.639200 2_3:-52660163 Msa0298590:intron
TATGAATATGGCACTACCTG+GGG 0.643954 2_3:-52659249 Msa0298590:CDS
CAATATACCTGAGCAAGAGA+CGG 0.643989 2_3:+52663453 None:intergenic
AAAGAAATGCAACAAACCAA+GGG 0.644998 2_3:+52663555 None:intergenic
ATCTAAGTTCAAGATGAAAG+GGG 0.649865 2_3:+52660574 None:intergenic
GCACCAGCCTTGTATTGATG+CGG 0.651294 2_3:+52661085 None:intergenic
AAGGGTGATGATGTTGCCAA+CGG 0.654182 2_3:-52660033 Msa0298590:intron
TGAATCTAACAAAATGCACA+AGG 0.655703 2_3:+52660511 None:intergenic
GAGCAAGAGACGGTCTAGGT+GGG 0.660296 2_3:+52663463 None:intergenic
GATGTATGGATCAACGTCGG+AGG 0.666581 2_3:-52659004 Msa0298590:CDS
AACAGAAAAGATGGGCCTCG+GGG 0.692321 2_3:-52658867 Msa0298590:CDS
TTGGATGTATGGATCAACGT+CGG 0.710703 2_3:-52659007 Msa0298590:CDS
AACTCAAACAGAGAAAACAA+GGG 0.737012 2_3:+52663722 None:intergenic
TAGAGTATCAAACAACCCCG+AGG 0.765044 2_3:+52658852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTAAATAATTTTTTT+GGG + chr2_3:52660639-52660658 None:intergenic 0.0%
!! AATTGTTGATATATAAAATA+CGG + chr2_3:52658429-52658448 Msa0298580:intron 10.0%
!!! TTACAATTTTTTTCATTATA+GGG - chr2_3:52658939-52658958 Msa0298590:CDS 10.0%
!!! AAAACTTATTTTATTGAAAA+TGG - chr2_3:52659375-52659394 Msa0298590:CDS 10.0%
!!! TAATTGTTTTTCAATTTTTT+TGG + chr2_3:52660351-52660370 None:intergenic 10.0%
!!! TAGTCATTTTTTAAAATATT+AGG - chr2_3:52662977-52662996 Msa0298590:CDS 10.0%
!! NNNNNNNNNAACAAATTTCA+GGG + chr2_3:52663286-52663305 None:intergenic 10.0%
!! NNNNNNNNNNAACAAATTTC+AGG + chr2_3:52663287-52663306 None:intergenic 10.0%
!! AGTACATAATAAATAATACT+AGG + chr2_3:52658890-52658909 None:intergenic 15.0%
!!! CTTACAATTTTTTTCATTAT+AGG - chr2_3:52658938-52658957 Msa0298590:CDS 15.0%
!!! AACTCATTCTTTTTTTTTAA+AGG - chr2_3:52659591-52659610 Msa0298590:intron 15.0%
!!! TTTTCAATTTTTTTGGAAAA+AGG + chr2_3:52660344-52660363 None:intergenic 15.0%
!!! TCTATAAAGAAACTTTTTTT+GGG - chr2_3:52661806-52661825 Msa0298590:intron 15.0%
!!! TGTAGTACTTTTTTTTTATA+TGG + chr2_3:52662165-52662184 None:intergenic 15.0%
!!! TAAAAAAAAAGTACTACATA+TGG - chr2_3:52662167-52662186 Msa0298590:intron 15.0%
!!! AAAATTAGTTTGAAAATACT+AGG - chr2_3:52662193-52662212 Msa0298590:intron 15.0%
!!! ATTTGTCATTTAAAAATTGA+AGG - chr2_3:52662546-52662565 Msa0298590:intron 15.0%
!!! TCATTTTTTAAAATATTAGG+TGG - chr2_3:52662980-52662999 Msa0298590:CDS 15.0%
!!! CATTTTTTAAAATATTAGGT+GGG - chr2_3:52662981-52663000 Msa0298590:CDS 15.0%
!! GATATATTAAAATTTCTCTA+CGG - chr2_3:52663560-52663579 Msa0298590:CDS 15.0%
!!! TTGGTCTTATTATAAATGTA+TGG - chr2_3:52658143-52658162 Msa0298590:CDS 20.0%
!! ATATTAGATGAGAATTTCTA+TGG + chr2_3:52658188-52658207 Msa0298580:intron 20.0%
!!! TAGGTCTTATTATAAATGTA+TGG - chr2_3:52658214-52658233 Msa0298590:intron 20.0%
!!! ACAAAATTTTATCATAGAGA+GGG + chr2_3:52658339-52658358 Msa0298580:intron 20.0%
!!! AACAAAATTTTATCATAGAG+AGG + chr2_3:52658340-52658359 Msa0298580:intron 20.0%
!! ACATTGTATTTCTTACAAAA+AGG + chr2_3:52659171-52659190 None:intergenic 20.0%
!! TTAGTTAGAAGAAAAAAACT+TGG + chr2_3:52659420-52659439 None:intergenic 20.0%
!! AAAATTATTTGAACCTTCTA+TGG - chr2_3:52659484-52659503 Msa0298590:intron 20.0%
!!! GTAAAATTTGTTCATCATAA+TGG + chr2_3:52659644-52659663 None:intergenic 20.0%
!! GATAAATGTCAAATAATTCA+AGG + chr2_3:52660023-52660042 None:intergenic 20.0%
!! ACTAATTCTGGTATTAAATA+TGG + chr2_3:52660073-52660092 None:intergenic 20.0%
!! AACAAAAATGAGTTATCAAA+TGG + chr2_3:52660460-52660479 None:intergenic 20.0%
!!! ATTTTGCATTGTTAGAAAAA+TGG + chr2_3:52660533-52660552 None:intergenic 20.0%
!!! TAAATAATTTTTTTGGGTGT+GGG + chr2_3:52660633-52660652 None:intergenic 20.0%
!!! TTAAATAATTTTTTTGGGTG+TGG + chr2_3:52660634-52660653 None:intergenic 20.0%
!! TATAGTTGATTACGATTTAT+TGG + chr2_3:52661120-52661139 None:intergenic 20.0%
!!! ATAACGTTTTTATAATCTGA+CGG - chr2_3:52661213-52661232 Msa0298590:intron 20.0%
!! GTAAAAACTAGTAGTAATAT+TGG + chr2_3:52661660-52661679 None:intergenic 20.0%
!!! ATTACTACTAGTTTTTACAT+TGG - chr2_3:52661662-52661681 Msa0298590:intron 20.0%
!! AGTTAAAAAGTGAATTGATA+AGG + chr2_3:52661711-52661730 None:intergenic 20.0%
!!! AAATGTATATTACATTGACT+TGG + chr2_3:52661748-52661767 None:intergenic 20.0%
!!! GTCTATAAAGAAACTTTTTT+TGG - chr2_3:52661805-52661824 Msa0298590:intron 20.0%
!!! CATAAATTACTTTTCTTCTA+TGG + chr2_3:52661923-52661942 None:intergenic 20.0%
!! CATAGAAGAAAAGTAATTTA+TGG - chr2_3:52661921-52661940 Msa0298590:intron 20.0%
!! TAGTTAATATAAATTACCGT+TGG + chr2_3:52661997-52662016 None:intergenic 20.0%
!!! TTTTTTATATGGAACCATAT+GGG + chr2_3:52662154-52662173 None:intergenic 20.0%
!!! TTTTTTTATATGGAACCATA+TGG + chr2_3:52662155-52662174 None:intergenic 20.0%
!!! TTACAATTTTATCAACCAAA+TGG - chr2_3:52662395-52662414 Msa0298590:intron 20.0%
!!! TTGTTGAAATTTTTTAGAGA+TGG - chr2_3:52662611-52662630 Msa0298590:intron 20.0%
!! AACATAGACAATATATTCAA+AGG - chr2_3:52662798-52662817 Msa0298590:CDS 20.0%
!! AATATAATCTCTCAAATTCA+TGG - chr2_3:52662842-52662861 Msa0298590:CDS 20.0%
!! GATCTAATATGTTCATATTA+TGG - chr2_3:52662899-52662918 Msa0298590:CDS 20.0%
!! TGTAATAATATGTGTTAACT+TGG - chr2_3:52662935-52662954 Msa0298590:CDS 20.0%
!! GTAATAATATGTGTTAACTT+GGG - chr2_3:52662936-52662955 Msa0298590:CDS 20.0%
!!! TAAAACTATATCTACGATTT+TGG - chr2_3:52663617-52663636 Msa0298590:CDS 20.0%
!!! AAAACTATATCTACGATTTT+GGG - chr2_3:52663618-52663637 Msa0298590:CDS 20.0%
! TTACTAGATGAGAATTTCTA+TGG + chr2_3:52658119-52658138 Msa0298580:intron 25.0%
! TCTCATCTAATATAAGAGTT+AGG - chr2_3:52658195-52658214 Msa0298590:intron 25.0%
! TCTTATTATAAATGTATGGC+AGG - chr2_3:52658147-52658166 Msa0298590:CDS 25.0%
! ATTATGTACTATATGTAGCT+TGG - chr2_3:52658900-52658919 Msa0298590:CDS 25.0%
! AACCAATCTTGATAAAATTC+TGG + chr2_3:52659258-52659277 None:intergenic 25.0%
!!! AACCTCTGTTTTTTTATATG+AGG - chr2_3:52659531-52659550 Msa0298590:intron 25.0%
! AACCTCATATAAAAAAACAG+AGG + chr2_3:52659536-52659555 None:intergenic 25.0%
!!! TTTTTGTTGTCTTTATTTGC+AGG - chr2_3:52659683-52659702 Msa0298590:intron 25.0%
! AAATCATTCAACCATAATCA+AGG - chr2_3:52659803-52659822 Msa0298590:intron 25.0%
! ATGGAAAATTATTGTCATGA+TGG + chr2_3:52660054-52660073 None:intergenic 25.0%
!! TTGTTATTATGGACTAATTC+TGG + chr2_3:52660085-52660104 None:intergenic 25.0%
!!! TCAAAAGAAGCTTGTTATTA+TGG + chr2_3:52660096-52660115 None:intergenic 25.0%
! AATATTGTGTTTGAGCTATT+TGG + chr2_3:52660172-52660191 None:intergenic 25.0%
! CTGAAATGTTATATTCAGAT+TGG + chr2_3:52660196-52660215 None:intergenic 25.0%
! GACTACAAACAAAATGATTA+AGG - chr2_3:52660220-52660239 Msa0298590:intron 25.0%
! GGATAGATTAGAAAAATTTG+TGG + chr2_3:52660496-52660515 None:intergenic 25.0%
! ATTGTTAGAAAAATGGTGTT+GGG + chr2_3:52660526-52660545 None:intergenic 25.0%
!! AAGAACAAGATAACTTTTCA+TGG - chr2_3:52660734-52660753 Msa0298590:intron 25.0%
! TTAAAAATACAGCTTCCTTA+CGG - chr2_3:52660782-52660801 Msa0298590:intron 25.0%
!! CATGCATCATTTACATATTT+TGG + chr2_3:52660808-52660827 None:intergenic 25.0%
!! AGTGTGTTTTGCAATATTTA+AGG - chr2_3:52661012-52661031 Msa0298590:intron 25.0%
!!! ACATTTTTTTCGTTGTTGAT+AGG + chr2_3:52661049-52661068 None:intergenic 25.0%
! CAACGAAAAAAATGTGATAT+TGG - chr2_3:52661054-52661073 Msa0298590:intron 25.0%
! TCTGTTCATTATACAAATGA+TGG + chr2_3:52661390-52661409 None:intergenic 25.0%
! AATCTAAGTTCAAGATGAAA+GGG + chr2_3:52661441-52661460 None:intergenic 25.0%
!! TGCATTTTGTTAGATTCAAA+AGG - chr2_3:52661505-52661524 Msa0298590:intron 25.0%
!! GCATTTTGTTAGATTCAAAA+GGG - chr2_3:52661506-52661525 Msa0298590:intron 25.0%
!! CATTTTGTTAGATTCAAAAG+GGG - chr2_3:52661507-52661526 Msa0298590:intron 25.0%
!! ATTTTGTCCAATATAGTACT+TGG - chr2_3:52661845-52661864 Msa0298590:intron 25.0%
!! TTTTGTCCAATATAGTACTT+GGG - chr2_3:52661846-52661865 Msa0298590:intron 25.0%
! TGACATTCAAAATAGAAAGA+AGG - chr2_3:52661959-52661978 Msa0298590:intron 25.0%
! GACATTCAAAATAGAAAGAA+GGG - chr2_3:52661960-52661979 Msa0298590:intron 25.0%
!! TTTTTATATGGAACCATATG+GGG + chr2_3:52662153-52662172 None:intergenic 25.0%
! AACTATCATCTATCATTTAC+AGG + chr2_3:52662291-52662310 None:intergenic 25.0%
!! AATTTTATCAACCAAATGGT+TGG - chr2_3:52662399-52662418 Msa0298590:intron 25.0%
! TCATTTAAAAATTGAAGGCT+TGG - chr2_3:52662551-52662570 Msa0298590:intron 25.0%
!!! AAATTTTTTAGAGATGGAAG+TGG - chr2_3:52662617-52662636 Msa0298590:intron 25.0%
!!! TTTTAAAATATTAGGTGGGT+TGG - chr2_3:52662985-52663004 Msa0298590:CDS 25.0%
! ATACTTACTATGTTATCTTG+AGG + chr2_3:52663119-52663138 None:intergenic 25.0%
!!! GTATTTTTGGATCTTAAGTT+GGG - chr2_3:52663247-52663266 Msa0298590:intron 25.0%
! ACTTCAAATTCAACAACTTA+AGG + chr2_3:52663400-52663419 None:intergenic 25.0%
! TTTCTTTACTGTTAATCAGT+TGG + chr2_3:52663510-52663529 None:intergenic 25.0%
! TTTAATAAGCTCTCATTAGT+AGG - chr2_3:52663534-52663553 Msa0298590:CDS 25.0%
! TGGGAGTAAACTAATAAATA+AGG - chr2_3:52663648-52663667 Msa0298590:CDS 25.0%
AGAAATTCTCATCTAGTAAG+AGG - chr2_3:52658120-52658139 Msa0298590:CDS 30.0%
TTACCAATACACCTTCTTTA+TGG + chr2_3:52658257-52658276 Msa0298580:intron 30.0%
AACTCAAACAGAGAAAACAA+GGG + chr2_3:52658292-52658311 Msa0298580:CDS 30.0%
!! ATACACATTTTCAAGAGTGA+TGG - chr2_3:52658363-52658382 Msa0298590:intron 30.0%
AAAGAAATGCAACAAACCAA+GGG + chr2_3:52658459-52658478 Msa0298580:intron 30.0%
!! GAGAATGAGCAATTTTGAAA+GGG + chr2_3:52658602-52658621 None:intergenic 30.0%
! AGAGAATGAGCAATTTTGAA+AGG + chr2_3:52658603-52658622 None:intergenic 30.0%
AATTGCTCATTCTCTTAACT+CGG - chr2_3:52658608-52658627 Msa0298590:intron 30.0%
!!! CACGTTGACATTTTTAAGAT+CGG - chr2_3:52658674-52658693 Msa0298590:intron 30.0%
!! CTCTAAATTTGCTAAGCTTT+GGG - chr2_3:52659143-52659162 Msa0298590:intron 30.0%
!! TCATCACAAAAGTACCTAAA+AGG + chr2_3:52659207-52659226 None:intergenic 30.0%
! CACCAGAATTTTATCAAGAT+TGG - chr2_3:52659253-52659272 Msa0298590:CDS 30.0%
! TCAAGATTGGTTAAGAATGA+AGG - chr2_3:52659266-52659285 Msa0298590:CDS 30.0%
TTGTTGAGAGTGAATTCATT+AGG - chr2_3:52659323-52659342 Msa0298590:CDS 30.0%
ATCGTATTATGTGACACATA+AGG - chr2_3:52659439-52659458 Msa0298590:intron 30.0%
! CATTCTCAATTTTACTCTTG+AGG + chr2_3:52659722-52659741 None:intergenic 30.0%
CTTGATATGTACCTTGATTA+TGG + chr2_3:52659817-52659836 None:intergenic 30.0%
!! TAGTAGGTTTTGTATTGATG+TGG + chr2_3:52659944-52659963 None:intergenic 30.0%
! GATCTGAAAAAATTGGTAGT+AGG + chr2_3:52659960-52659979 None:intergenic 30.0%
TGTGCTTGATCTGAAAAAAT+TGG + chr2_3:52659967-52659986 None:intergenic 30.0%
GTGGAAATATATTCAATAGG+TGG + chr2_3:52660402-52660421 None:intergenic 30.0%
! GTGGTGGAAATATATTCAAT+AGG + chr2_3:52660405-52660424 None:intergenic 30.0%
TCATGAAAAATTTAGTGTGG+TGG + chr2_3:52660421-52660440 None:intergenic 30.0%
TATCAAATGGTATAGTGGTT+TGG + chr2_3:52660447-52660466 None:intergenic 30.0%
TGAGTTATCAAATGGTATAG+TGG + chr2_3:52660452-52660471 None:intergenic 30.0%
! TTGTTAGAAAAATGGTGTTG+GGG + chr2_3:52660525-52660544 None:intergenic 30.0%
CATTGTTAGAAAAATGGTGT+TGG + chr2_3:52660527-52660546 None:intergenic 30.0%
! CTTTTCAAAGATGTCATGAT+TGG + chr2_3:52660717-52660736 None:intergenic 30.0%
!!! ATTTACATATTTTGGCCGTA+AGG + chr2_3:52660800-52660819 None:intergenic 30.0%
AACAAGGAAAATCTTCTAGA+TGG - chr2_3:52660857-52660876 Msa0298590:intron 30.0%
CTAGATATGTAGATTATGTG+AGG + chr2_3:52660887-52660906 None:intergenic 30.0%
CATTGACACAATTGTATTCA+AGG + chr2_3:52660990-52661009 None:intergenic 30.0%
ATCTAAGTTCAAGATGAAAG+GGG + chr2_3:52661440-52661459 None:intergenic 30.0%
CAATCTAAGTTCAAGATGAA+AGG + chr2_3:52661442-52661461 None:intergenic 30.0%
TGAATCTAACAAAATGCACA+AGG + chr2_3:52661503-52661522 None:intergenic 30.0%
!! TGTATATTACATTGACTTGG+TGG + chr2_3:52661745-52661764 None:intergenic 30.0%
TTTGTCCAATATAGTACTTG+GGG - chr2_3:52661847-52661866 Msa0298590:intron 30.0%
!! CTATTTTGAATGTCATGATC+AGG + chr2_3:52661954-52661973 None:intergenic 30.0%
!! TTATTTCTAAGTACCCCATA+TGG - chr2_3:52662137-52662156 Msa0298590:intron 30.0%
! TTTTGTGATGTCAGCATATT+TGG - chr2_3:52662309-52662328 Msa0298590:CDS 30.0%
TTTGTGATGTCAGCATATTT+GGG - chr2_3:52662310-52662329 Msa0298590:intron 30.0%
TACTATTCAATCTTGTCATG+AGG + chr2_3:52662521-52662540 None:intergenic 30.0%
GTGTTACAAAGGTTATCAAT+AGG + chr2_3:52662708-52662727 None:intergenic 30.0%
TATGATCCAACAGAAAAGAT+GGG - chr2_3:52663136-52663155 Msa0298590:intron 30.0%
!!! GGTATTTTTGGATCTTAAGT+TGG - chr2_3:52663246-52663265 Msa0298590:intron 30.0%
AATTTCAGGGATTGATCTTA+AGG + chr2_3:52663273-52663292 None:intergenic 30.0%
!!! ATGCAATGTACTTTTTCTTC+AGG + chr2_3:52663466-52663485 None:intergenic 30.0%
! TACGATTTTGGGCAAAAAAT+GGG - chr2_3:52663629-52663648 Msa0298590:CDS 30.0%
TGCAGCAAATAAACTTAATG+TGG - chr2_3:52663813-52663832 Msa0298590:five_prime_UTR 30.0%
ATTCTCATCTAGTAAGAGGT+TGG - chr2_3:52658124-52658143 Msa0298590:CDS 35.0%
ATGAGTTGCAACCATAAAGA+AGG - chr2_3:52658243-52658262 Msa0298590:intron 35.0%
! CAACCATAAAGAAGGTGTAT+TGG - chr2_3:52658251-52658270 Msa0298590:intron 35.0%
GAACTCAAACAGAGAAAACA+AGG + chr2_3:52658293-52658312 Msa0298580:CDS 35.0%
! TTCTCTGTTTGAGTTCAACA+TGG - chr2_3:52658297-52658316 Msa0298590:intron 35.0%
! TTTTATCATAGAGAGGGAGA+GGG + chr2_3:52658333-52658352 Msa0298580:intron 35.0%
! ATTTTATCATAGAGAGGGAG+AGG + chr2_3:52658334-52658353 Msa0298580:intron 35.0%
CAAAGAAATGCAACAAACCA+AGG + chr2_3:52658460-52658479 Msa0298580:intron 35.0%
TTGCATTTCTTTGTGAGTCA+TGG - chr2_3:52658467-52658486 Msa0298590:intron 35.0%
!!! GTTCAATCGCTTTTTAAGTC+AGG + chr2_3:52658704-52658723 None:intergenic 35.0%
GACTTAAAAAGCGATTGAAC+CGG - chr2_3:52658704-52658723 Msa0298590:intron 35.0%
!!! CACGCTGATATTTTTTAGAC+CGG + chr2_3:52658726-52658745 None:intergenic 35.0%
! TGTAGCTTGGTGAAATATTG+TGG - chr2_3:52658913-52658932 Msa0298590:CDS 35.0%
! ATTGGACTTGTTTGTGACAA+CGG - chr2_3:52658978-52658997 Msa0298590:CDS 35.0%
ACTGTATTCACTGTGATGAT+TGG + chr2_3:52659024-52659043 None:intergenic 35.0%
GAATACAGTGTTGTCATTGT+TGG - chr2_3:52659035-52659054 Msa0298590:intron 35.0%
AAATTTAGAGGCTTCCACAA+GGG + chr2_3:52659133-52659152 None:intergenic 35.0%
CCAAAGCTTAGCAAATTTAG+AGG + chr2_3:52659145-52659164 None:intergenic 35.0%
!! CCTCTAAATTTGCTAAGCTT+TGG - chr2_3:52659142-52659161 Msa0298590:intron 35.0%
!! TACAAGTTAGAGCACCTTTT+AGG - chr2_3:52659190-52659209 Msa0298590:intron 35.0%
! GAGATGATTAGTTCCATAGA+AGG + chr2_3:52659500-52659519 None:intergenic 35.0%
GTTAGAAGAGTTCGTAAAAC+AGG + chr2_3:52659620-52659639 None:intergenic 35.0%
! TTGTTGTCTTTATTTGCAGG+AGG - chr2_3:52659686-52659705 Msa0298590:intron 35.0%
! CTTTATTTGCAGGAGGAATA+CGG - chr2_3:52659693-52659712 Msa0298590:intron 35.0%
TTTATTTGCAGGAGGAATAC+GGG - chr2_3:52659694-52659713 Msa0298590:intron 35.0%
!! GTTTTGTATTGATGTGGAGT+TGG + chr2_3:52659938-52659957 None:intergenic 35.0%
GATCATGCTCAATAGTTTGA+TGG + chr2_3:52660251-52660270 None:intergenic 35.0%
! TTTTGGCATTATGCTTGAGT+AGG + chr2_3:52660290-52660309 None:intergenic 35.0%
TACTCAAGCATAATGCCAAA+AGG - chr2_3:52660289-52660308 Msa0298590:intron 35.0%
AAGGTTATTGATCCTTGAGT+GGG + chr2_3:52660325-52660344 None:intergenic 35.0%
AAAGGTTATTGATCCTTGAG+TGG + chr2_3:52660326-52660345 None:intergenic 35.0%
CGCTCATGAAAAATTTAGTG+TGG + chr2_3:52660424-52660443 None:intergenic 35.0%
! TGTTAGAAAAATGGTGTTGG+GGG + chr2_3:52660524-52660543 None:intergenic 35.0%
GTCTTACAAAAGCAAAAGGT+AGG + chr2_3:52660575-52660594 None:intergenic 35.0%
GTGTGTCTTACAAAAGCAAA+AGG + chr2_3:52660579-52660598 None:intergenic 35.0%
!!! TAATTTTTTTGGGTGTGGGT+GGG + chr2_3:52660629-52660648 None:intergenic 35.0%
!!! ATAATTTTTTTGGGTGTGGG+TGG + chr2_3:52660630-52660649 None:intergenic 35.0%
GTTAGATTCAAAAGGGGAAA+AGG - chr2_3:52661513-52661532 Msa0298590:intron 35.0%
TAGCCCATCATAGAATTGTT+GGG + chr2_3:52661560-52661579 None:intergenic 35.0%
TTAGCCCATCATAGAATTGT+TGG + chr2_3:52661561-52661580 None:intergenic 35.0%
TTGTCCAATATAGTACTTGG+GGG - chr2_3:52661848-52661867 Msa0298590:intron 35.0%
! ACCAAATGGTTGGCTATAAA+TGG - chr2_3:52662409-52662428 Msa0298590:intron 35.0%
ACCATTTATAGCCAACCATT+TGG + chr2_3:52662413-52662432 None:intergenic 35.0%
TTAGAGATGGAAGTGGTATT+TGG - chr2_3:52662624-52662643 Msa0298590:intron 35.0%
TAACCTTTGTAACACTCTTG+AGG - chr2_3:52662713-52662732 Msa0298590:intron 35.0%
GCTAGTTGCACATATGAATA+TGG - chr2_3:52662750-52662769 Msa0298590:CDS 35.0%
ATATGAATATGGCACTACCT+GGG - chr2_3:52662761-52662780 Msa0298590:CDS 35.0%
GTATGATCCAACAGAAAAGA+TGG - chr2_3:52663135-52663154 Msa0298590:intron 35.0%
!! AGCAAGCACAATCCATTTTT+GGG - chr2_3:52663185-52663204 Msa0298590:intron 35.0%
TGGTAAGCTTCAATTTAGAG+AGG - chr2_3:52663217-52663236 Msa0298590:intron 35.0%
TTCAATTTAGAGAGGCTCTT+GGG - chr2_3:52663225-52663244 Msa0298590:intron 35.0%
ATTGTAAATGAGGATGCATC+CGG + chr2_3:52663441-52663460 None:intergenic 35.0%
ACTCTCTTTGAGTACAAACT+TGG - chr2_3:52663592-52663611 Msa0298590:CDS 35.0%
! CTACGATTTTGGGCAAAAAA+TGG - chr2_3:52663628-52663647 Msa0298590:CDS 35.0%
AAGAAACGCCACTACAAAAT+TGG - chr2_3:52663846-52663865 Msa0298590:five_prime_UTR 35.0%
TGCTTGTTTGTCATAGTAAC+TGG + chr2_3:52663889-52663908 None:intergenic 35.0%
TCAACAATTATCCCTTCCCT+TGG - chr2_3:52658440-52658459 Msa0298590:intron 40.0%
AATGCAACAAACCAAGGGAA+GGG + chr2_3:52658454-52658473 Msa0298580:intron 40.0%
AAATGCAACAAACCAAGGGA+AGG + chr2_3:52658455-52658474 Msa0298580:intron 40.0%
AGTCATGGTTCACCTTCATT+TGG - chr2_3:52658482-52658501 Msa0298590:intron 40.0%
GTCATGGTTCACCTTCATTT+GGG - chr2_3:52658483-52658502 Msa0298590:intron 40.0%
CAATATACCTGAGCAAGAGA+CGG + chr2_3:52658561-52658580 None:intergenic 40.0%
!! TCACGTTCGGTATTTTTCAG+CGG - chr2_3:52658642-52658661 Msa0298590:intron 40.0%
GTATTCACTGTGATGATTGG+TGG + chr2_3:52659021-52659040 None:intergenic 40.0%
! GCATGCTATGTTTCTGATGA+TGG - chr2_3:52659084-52659103 Msa0298590:intron 40.0%
! ACAAGGGCATAAAAGGTAAG+AGG + chr2_3:52659117-52659136 None:intergenic 40.0%
! TCTTACCTTTTATGCCCTTG+TGG - chr2_3:52659116-52659135 Msa0298590:intron 40.0%
CAAATTTAGAGGCTTCCACA+AGG + chr2_3:52659134-52659153 None:intergenic 40.0%
CAAAATCCACTTCCTCTTGT+AGG - chr2_3:52659747-52659766 Msa0298590:intron 40.0%
!! TGTGGAGTTGGTTTGTTCTT+TGG + chr2_3:52659926-52659945 None:intergenic 40.0%
TTATTGATCCTTGAGTGGGA+TGG + chr2_3:52660321-52660340 None:intergenic 40.0%
! GTTAGAAAAATGGTGTTGGG+GGG + chr2_3:52660523-52660542 None:intergenic 40.0%
! CCATTGGGTTAGATGATATC+AGG + chr2_3:52660601-52660620 None:intergenic 40.0%
CCTGATATCATCTAACCCAA+TGG - chr2_3:52660598-52660617 Msa0298590:CDS 40.0%
!!! AATTTTTTTGGGTGTGGGTG+GGG + chr2_3:52660628-52660647 None:intergenic 40.0%
TGATGCATGCTTCTTTGTGT+TGG - chr2_3:52660819-52660838 Msa0298590:intron 40.0%
! TTTGTGTTGGCAGGTGATAT+GGG - chr2_3:52660832-52660851 Msa0298590:intron 40.0%
AGATCATCCGCATCAATACA+AGG - chr2_3:52660919-52660938 Msa0298590:intron 40.0%
AATGAACAGACAAGAGTCTC+TGG - chr2_3:52661400-52661419 Msa0298590:intron 40.0%
TGTCCCCAACAATTCTATGA+TGG - chr2_3:52661553-52661572 Msa0298590:intron 40.0%
GTCCCCAACAATTCTATGAT+GGG - chr2_3:52661554-52661573 Msa0298590:intron 40.0%
AGCCCATCATAGAATTGTTG+GGG + chr2_3:52661559-52661578 None:intergenic 40.0%
TGTCCAATATAGTACTTGGG+GGG - chr2_3:52661849-52661868 Msa0298590:intron 40.0%
GAATGTCATGATCAGGACAA+AGG + chr2_3:52661947-52661966 None:intergenic 40.0%
TGAATCAGCTACTCATGCTT+TGG - chr2_3:52662665-52662684 Msa0298590:intron 40.0%
CATATGAATATGGCACTACC+TGG - chr2_3:52662760-52662779 Msa0298590:CDS 40.0%
TATGAATATGGCACTACCTG+GGG - chr2_3:52662762-52662781 Msa0298590:CDS 40.0%
!! TATTAGGTGGGTTGGATGTA+TGG - chr2_3:52662993-52663012 Msa0298590:CDS 40.0%
TTGGATGTATGGATCAACGT+CGG - chr2_3:52663004-52663023 Msa0298590:CDS 40.0%
TGGACATTCATACAAGAGGA+TGG - chr2_3:52663045-52663064 Msa0298590:CDS 40.0%
AATGTGTTCACCAGATCCAT+TGG - chr2_3:52663076-52663095 Msa0298590:intron 40.0%
! GAGCAAGCACAATCCATTTT+TGG - chr2_3:52663184-52663203 Msa0298590:intron 40.0%
CCATAGAGAAAGCCCAAAAA+TGG + chr2_3:52663200-52663219 None:intergenic 40.0%
!! CCATTTTTGGGCTTTCTCTA+TGG - chr2_3:52663197-52663216 Msa0298590:intron 40.0%
CTTCAATTTAGAGAGGCTCT+TGG - chr2_3:52663224-52663243 Msa0298590:intron 40.0%
TCTCATTGCAATGACATCTC+CGG - chr2_3:52663419-52663438 Msa0298590:intron 40.0%
GGATGCATCCTCATTTACAA+TGG - chr2_3:52663440-52663459 Msa0298590:intron 40.0%
TCTTCAGGCCATTGTAAATG+AGG + chr2_3:52663451-52663470 None:intergenic 40.0%
! CTCACTGTCCAATTTTGTAG+TGG + chr2_3:52663857-52663876 None:intergenic 40.0%
GAGAAGGAAGAGCAAAGTGA+AGG + chr2_3:52658392-52658411 Msa0298580:intron 45.0%
CTCTTCCTTCTCTTGCTTCT+TGG - chr2_3:52658400-52658419 Msa0298590:intron 45.0%
GGTAACCAAGAAGCAAGAGA+AGG + chr2_3:52658408-52658427 Msa0298580:intron 45.0%
CATGGTGACAACCCAAATGA+AGG + chr2_3:52658497-52658516 Msa0298580:intron 45.0%
TTGTCACCATGAGCACCAAA+TGG - chr2_3:52658506-52658525 Msa0298590:intron 45.0%
GGTATATGCAGGACTCCATT+TGG + chr2_3:52658524-52658543 None:intergenic 45.0%
!! AGGTGGGTTATGGTATATGC+AGG + chr2_3:52658535-52658554 None:intergenic 45.0%
TGCTCATTCTCTTAACTCGG+TGG - chr2_3:52658611-52658630 Msa0298590:intron 45.0%
GCTCATTCTCTTAACTCGGT+GGG - chr2_3:52658612-52658631 Msa0298590:intron 45.0%
GTCACAAACAAGTCCAATGC+TGG + chr2_3:52658976-52658995 None:intergenic 45.0%
!! ATGATTGGTGGTTCTAGCAC+TGG + chr2_3:52659009-52659028 None:intergenic 45.0%
!! TAGCATGCTAGCTTGTTAGC+TGG + chr2_3:52659072-52659091 None:intergenic 45.0%
AAGTCTGTCTGCTAGAGAGA+TGG + chr2_3:52659562-52659581 None:intergenic 45.0%
AACTCTCCTACAAGAGGAAG+TGG + chr2_3:52659756-52659775 None:intergenic 45.0%
ATAGCGAACTCTCCTACAAG+AGG + chr2_3:52659762-52659781 None:intergenic 45.0%
! AGTAGGAGGTGTGGTGTAAA+GGG + chr2_3:52660273-52660292 None:intergenic 45.0%
TTATGCTTGAGTAGGAGGTG+TGG + chr2_3:52660282-52660301 None:intergenic 45.0%
TGGCATTATGCTTGAGTAGG+AGG + chr2_3:52660287-52660306 None:intergenic 45.0%
! GTGGGATGGTTTCATCCTTT+TGG + chr2_3:52660307-52660326 None:intergenic 45.0%
! CTTTGTGTTGGCAGGTGATA+TGG - chr2_3:52660831-52660850 Msa0298590:intron 45.0%
AAGGCGTGTAGAGCAATCTT+AGG + chr2_3:52661484-52661503 None:intergenic 45.0%
! GGGCTAAAAGACGATCCTTT+TGG - chr2_3:52661574-52661593 Msa0298590:intron 45.0%
!! TCCTTTTGGAAATCAGCTCG+TGG - chr2_3:52661588-52661607 Msa0298590:intron 45.0%
CAATATAGTACTTGGGGGGA+GGG - chr2_3:52661853-52661872 Msa0298590:intron 45.0%
CTTCAAGGGATGCTATATGC+AGG - chr2_3:52661885-52661904 Msa0298590:intron 45.0%
! AAGGGTGATGATGTTGCCAA+CGG - chr2_3:52661978-52661997 Msa0298590:intron 45.0%
! TCAGCTACTCATGCTTTGGA+AGG - chr2_3:52662669-52662688 Msa0298590:intron 45.0%
!! CAGCCTCAAGAGTGTTACAA+AGG + chr2_3:52662719-52662738 None:intergenic 45.0%
GGGTTGGACATTCATACAAG+AGG - chr2_3:52663041-52663060 Msa0298590:CDS 45.0%
!! ACCAGATCCATTGGCCTTTA+TGG - chr2_3:52663085-52663104 Msa0298590:intron 45.0%
! TAGAGTATCAAACAACCCCG+AGG + chr2_3:52663162-52663181 None:intergenic 45.0%
! GAGAGGCTCTTGGGTATTTT+TGG - chr2_3:52663234-52663253 Msa0298590:intron 45.0%
!!! CTTTATTTAAATAATTTTTT+TGG + chr2_3:52660640-52660659 None:intergenic 5.0%
!! GAGAGGGAGAGGGTTTTGAT+TGG + chr2_3:52658323-52658342 Msa0298580:intron 50.0%
!! AGGACTCCATTTGGTGCTCA+TGG + chr2_3:52658515-52658534 Msa0298580:intron 50.0%
GGTGGGAGTTAACTCACGTT+CGG - chr2_3:52658629-52658648 Msa0298590:intron 50.0%
AGTTAACTCCCGCTGGATCA+AGG - chr2_3:52658777-52658796 Msa0298590:intron 50.0%
GTTAACTCCCGCTGGATCAA+GGG - chr2_3:52658778-52658797 Msa0298590:intron 50.0%
TGCTCATTCCCTTGATCCAG+CGG + chr2_3:52658789-52658808 None:intergenic 50.0%
GGAACATGAGCTTCCAGCAT+TGG - chr2_3:52658960-52658979 Msa0298590:CDS 50.0%
! GGCTTCCACAAGGGCATAAA+AGG + chr2_3:52659124-52659143 None:intergenic 50.0%
! GAGTAGGAGGTGTGGTGTAA+AGG + chr2_3:52660274-52660293 None:intergenic 50.0%
GGATGAAACCATCCCACTCA+AGG - chr2_3:52660310-52660329 Msa0298590:intron 50.0%
! AAAATGGTGTTGGGGGGTTG+AGG + chr2_3:52660517-52660536 None:intergenic 50.0%
! GCATGCTTCTTTGTGTTGGC+AGG - chr2_3:52660823-52660842 Msa0298590:intron 50.0%
GCAGGTGATATGGGAGAACA+AGG - chr2_3:52660841-52660860 Msa0298590:intron 50.0%
CATCCGCATCAATACAAGGC+TGG - chr2_3:52660923-52660942 Msa0298590:intron 50.0%
! GCACCAGCCTTGTATTGATG+CGG + chr2_3:52660929-52660948 None:intergenic 50.0%
! GCCACGAGCTGATTTCCAAA+AGG + chr2_3:52661592-52661611 None:intergenic 50.0%
TCAGCTCGTGGCATTGTTTG+TGG - chr2_3:52661600-52661619 Msa0298590:intron 50.0%
CCTCCCCCCAAGTACTATAT+TGG + chr2_3:52661855-52661874 None:intergenic 50.0%
CCAATATAGTACTTGGGGGG+AGG - chr2_3:52661852-52661871 Msa0298590:intron 50.0%
GAGGGTTTGGAGGACTTCAA+GGG - chr2_3:52661871-52661890 Msa0298590:intron 50.0%
AATGCGCACGCACACACATA+TGG + chr2_3:52662074-52662093 None:intergenic 50.0%
GATGTATGGATCAACGTCGG+AGG - chr2_3:52663007-52663026 Msa0298590:CDS 50.0%
ACGTCGGAGGATGTACTTAC+TGG - chr2_3:52663020-52663039 Msa0298590:CDS 50.0%
CGTCGGAGGATGTACTTACT+GGG - chr2_3:52663021-52663040 Msa0298590:CDS 50.0%
GGAGGATGTACTTACTGGGT+TGG - chr2_3:52663025-52663044 Msa0298590:CDS 50.0%
CCCATAAAGGCCAATGGATC+TGG + chr2_3:52663089-52663108 None:intergenic 50.0%
CCAACAGAAAAGATGGGCCT+CGG - chr2_3:52663142-52663161 Msa0298590:intron 50.0%
CAACAGAAAAGATGGGCCTC+GGG - chr2_3:52663143-52663162 Msa0298590:intron 50.0%
AACAGAAAAGATGGGCCTCG+GGG - chr2_3:52663144-52663163 Msa0298590:intron 50.0%
!! GAGACGGTCTAGGTGGGTTA+TGG + chr2_3:52658545-52658564 None:intergenic 55.0%
GAGCAAGAGACGGTCTAGGT+GGG + chr2_3:52658551-52658570 None:intergenic 55.0%
TGAGCAAGAGACGGTCTAGG+TGG + chr2_3:52658552-52658571 None:intergenic 55.0%
ACCTAGACCGTCTCTTGCTC+AGG - chr2_3:52658551-52658570 Msa0298590:intron 55.0%
ACCTGAGCAAGAGACGGTCT+AGG + chr2_3:52658555-52658574 None:intergenic 55.0%
GCTCATTCCCTTGATCCAGC+GGG + chr2_3:52658788-52658807 None:intergenic 55.0%
TGTGGGTGGGGTGATCCATT+GGG + chr2_3:52660616-52660635 None:intergenic 55.0%
TAGTACTTGGGGGGAGGGTT+TGG - chr2_3:52661858-52661877 Msa0298590:intron 55.0%
GGAGGGTTTGGAGGACTTCA+AGG - chr2_3:52661870-52661889 Msa0298590:intron 55.0%
! CCGAGGCCCATCTTTTCTGT+TGG + chr2_3:52663145-52663164 None:intergenic 55.0%
TGTCTCAAGCGAGCAACTGC+AGG - chr2_3:52663741-52663760 Msa0298590:five_prime_UTR 55.0%
CAGCGGGAGTTAACTCACGC+TGG + chr2_3:52658772-52658791 None:intergenic 60.0%
CAGCGTGAGTTAACTCCCGC+TGG - chr2_3:52658770-52658789 Msa0298590:intron 60.0%
GTGTGGGTGGGGTGATCCAT+TGG + chr2_3:52660617-52660636 None:intergenic 60.0%
TACTTGGGGGGAGGGTTTGG+AGG - chr2_3:52661861-52661880 Msa0298590:intron 60.0%
TGGCACTACCTGGGGCAAAC+AGG - chr2_3:52662770-52662789 Msa0298590:CDS 60.0%
GTTGCTCACCTGTTTGCCCC+AGG + chr2_3:52662781-52662800 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 52658109 52663924 52658109 ID=Msa0298590;Name=Msa0298590
chr2_3 mRNA 52658109 52663924 52658109 ID=Msa0298590-mRNA-1;Parent=Msa0298590;Name=Msa0298590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=207|0.87|0.77|0.88|1|1|9|0|554
chr2_3 exon 52658109 52658187 52658109 ID=Msa0298590-mRNA-1:exon:16852;Parent=Msa0298590-mRNA-1
chr2_3 exon 52658787 52659034 52658787 ID=Msa0298590-mRNA-1:exon:16851;Parent=Msa0298590-mRNA-1
chr2_3 exon 52659242 52659405 52659242 ID=Msa0298590-mRNA-1:exon:16850;Parent=Msa0298590-mRNA-1
chr2_3 exon 52660034 52660172 52660034 ID=Msa0298590-mRNA-1:exon:16849;Parent=Msa0298590-mRNA-1
chr2_3 exon 52660412 52660624 52660412 ID=Msa0298590-mRNA-1:exon:16848;Parent=Msa0298590-mRNA-1
chr2_3 exon 52661072 52661188 52661072 ID=Msa0298590-mRNA-1:exon:16847;Parent=Msa0298590-mRNA-1
chr2_3 exon 52662209 52662328 52662209 ID=Msa0298590-mRNA-1:exon:16846;Parent=Msa0298590-mRNA-1
chr2_3 exon 52662746 52663073 52662746 ID=Msa0298590-mRNA-1:exon:16845;Parent=Msa0298590-mRNA-1
chr2_3 exon 52663461 52663924 52663461 ID=Msa0298590-mRNA-1:exon:16844;Parent=Msa0298590-mRNA-1
chr2_3 five_prime_UTR 52663718 52663924 52663718 ID=Msa0298590-mRNA-1:five_prime_utr;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52663461 52663717 52663461 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52662746 52663073 52662746 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52662209 52662328 52662209 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52661072 52661188 52661072 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52660412 52660624 52660412 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52660034 52660172 52660034 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52659242 52659405 52659242 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52658787 52659034 52658787 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3 CDS 52658109 52658187 52658109 ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
Gene Sequence

>Msa0298590

ATGGCCAATCAAAACCCTCTCCCTCTCTATGATAAAATTTTGTTGAAATACACATTTTCAAGAGTGATGGATTCCTTCACTTTGCTCTTCCTTCTCTTGCTTCTTGGTTACCGTATTTTATATATCAACAATTATCCCTTCCCTTGGTTTGTTGCATTTCTTTGTGAGTCATGGTTCACCTTCATTTGGGTTGTCACCATGAGCACCAAATGGAGTCCTGCATATACCATAACCCACCTAGACCGTCTCTTGCTCAGGGAACATGAGCTTCCAGCATTGGACTTGTTTGTGACAACGGCAGATCCAGTGCTAGAACCACCAATCATCACAGTGAATACAGTGTTGTCATTGTTGGCACTTGACTATCCAGCTAACAAGCTAGCATGCTATGTTTCTGATGATGGATGTTCACCTCTTACCTTTTATGCCCTTGTGGAAGCCTCTAAATTTGCTAAGCTTTGGGTACCTTTTTGTAAGAAATACAATGTACAAGTTAGAGCACCTTTTAGGTACTTTTGTGATGAGAATGCTGTAAGCAACATAGAAGAGTCACCAGAATTTTATCAAGATTGGTTAAGAATGAAGGAGGAATACGGGTACCTCAAGAGTAAAATTGAGAATGCAGCACAAAATCCACTTCCTCTTGTAGGAGAGTTCGCTATTTTCTCAAGCACACATCATAAAAATCATTCAACCATAATCAAGGTGATATGGGAGAACAAGGAAAATCTTCTAGATGGTTTGCCTCACATAATCTACATATCTAGAGAGAAAAAGTTAGATCATCCGCATCAATACAAGGCTGGTGCTATGAATGTGCTAACAAGAGTCTCTGGATTGATGACAAATGCCCCTTTCATCTTGAACTTAGATTGTGACATGTATGTGAACAATCCTAAGATTGCTCTACACGCCTTGTGCATTTTGTTAGATTCAAAAGGGGAAAAGGAAGTTGCATTTGTTCAATGTCCCCAACAATTCTATGATGGGCTAAAAGACGATCCTTTTGGAAATCAGCTCGTGGCATTGTTTGTGTACTTGGGGGGAGGGTTTGGAGGACTTCAAGGGATGCTATATGCAGGAACAAATTGCTTCCATAGAAGAAAAGTAATTTATGGCCTTTGTCCTGATCATGACATTCAAAATAGAAAGAAGGGTGATGATGTTGCCAACGAGATGGAAGTGGTATTTGGAACTTCAAAGAGATTTATTGAATCAGCTACTCATGCTTTGGAAGGCAAAACATCTACTCCTATTGATAACCTTTGTAACACTCTTGAGGCTGCAAAAAAAGTTGCTAGTTGCACATATGAATATGGCACTACCTGGGGCAAACAGGTGGGTTGGATGTATGGATCAACGTCGGAGGATGTACTTACTGGGTTGGACATTCATACAAGAGGATGGAGATCTGAAATGTGTTCACCAGATCCATTGGCCTTTATGGGTTGCTCACCTCAAGATAACATAGTAAGTATGATCCAACAGAAAAGATGGGCCTCGGGGTTGTTTGATACTCTACTGAGCAAGCACAATCCATTTTTGGGCTTTCTCTATGGTAAGCTTCAATTTAGAGAGGCTCTTGGAAGAAACGCCACTACAAAATTGGACAGTGAGATTAAGAATCCAGTTACTATGACAAACAAGCAAAACATCGAAACTTGA
Protein sequence

>Msa0298590

MANQNPLPLYDKILLKYTFSRVMDSFTLLFLLLLLGYRILYINNYPFPWFVAFLCESWFTFIWVVTMSTKWSPAYTITHLDRLLLREHELPALDLFVTTADPVLEPPIITVNTVLSLLALDYPANKLACYVSDDGCSPLTFYALVEASKFAKLWVPFCKKYNVQVRAPFRYFCDENAVSNIEESPEFYQDWLRMKEEYGYLKSKIENAAQNPLPLVGEFAIFSSTHHKNHSTIIKVIWENKENLLDGLPHIIYISREKKLDHPHQYKAGAMNVLTRVSGLMTNAPFILNLDCDMYVNNPKIALHALCILLDSKGEKEVAFVQCPQQFYDGLKDDPFGNQLVALFVYLGGGFGGLQGMLYAGTNCFHRRKVIYGLCPDHDIQNRKKGDDVANEMEVVFGTSKRFIESATHALEGKTSTPIDNLCNTLEAAKKVASCTYEYGTTWGKQVGWMYGSTSEDVLTGLDIHTRGWRSEMCSPDPLAFMGCSPQDNIVSMIQQKRWASGLFDTLLSKHNPFLGFLYGKLQFREALGRNATTKLDSEIKNPVTMTNKQNIET*