AlfalfaGEDB | Msa0298590

M. sativa cultivar zhongmu-4 / Msa0298590

KEGG: -
GO: GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392
PFAM: PF03552.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298590	AES67196.1	96.415	530	18	1	1	529	1	530	0.0	1072

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298590	sp\|Q339N5\|CSLH1_ORYSJ	51.887	530	237	8	9	529	11	531	5.22e-177	521

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298590	G7ITV2	96.415	530	18	1	1	529	1	530	0.0	1072

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0298590	0.822188	2.706832e-53	-8.615850e-47
Msa0000610	Msa0298590	0.835813	1.348501e-56	-8.615850e-47
Msa0001040	Msa0298590	0.802500	5.446715e-49	-8.615850e-47
Msa0001510	Msa0298590	0.804795	1.819324e-49	-8.615850e-47
Msa0002690	Msa0298590	0.866922	1.999862e-65	-8.615850e-47
Msa0002700	Msa0298590	0.873295	1.642180e-67	-8.615850e-47
Msa0003340	Msa0298590	0.804658	1.943540e-49	-8.615850e-47
Msa0003370	Msa0298590	0.806343	8.612578e-50	-8.615850e-47
Msa0003450	Msa0298590	0.818753	1.662654e-52	-8.615850e-47
Msa0004180	Msa0298590	0.805482	1.306943e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298590	MtrunA17_Chr2g0322351	96.415	530	18	1	1	529	1	530	0.0	1070
Msa0298590	MtrunA17_Chr4g0025201	62.970	532	188	5	1	529	1	526	0.0	684
Msa0298590	MtrunA17_Chr2g0322361	60.521	537	199	7	1	528	1	533	0.0	650
Msa0298590	MtrunA17_Chr2g0322371	61.205	531	195	6	1	528	1	523	0.0	646
Msa0298590	MtrunA17_Chr2g0322341	75.216	347	80	4	1	343	3	347	0.0	520
Msa0298590	MtrunA17_Chr8g0364641	36.049	577	315	11	1	529	182	752	5.39e-108	345
Msa0298590	MtrunA17_Chr3g0102541	37.311	528	290	11	1	513	1	502	6.17e-108	339
Msa0298590	MtrunA17_Chr8g0379241	37.213	567	292	14	7	514	185	746	1.35e-106	342
Msa0298590	MtrunA17_Chr1g0201731	36.301	584	292	13	8	514	275	855	1.80e-106	343
Msa0298590	MtrunA17_Chr3g0102531	36.981	530	288	11	1	513	1	501	2.11e-106	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0298590	AT2G32530.1	50.187	534	244	8	8	529	10	533	1.68e-177	520
Msa0298590	AT2G32620.3	49.438	534	248	8	8	529	10	533	1.50e-174	507
Msa0298590	AT2G32620.1	49.438	534	248	8	8	529	10	533	1.23e-172	507
Msa0298590	AT2G32540.1	50.556	540	244	9	3	529	4	533	6.44e-172	505
Msa0298590	AT2G32620.2	49.520	521	241	8	8	516	10	520	9.71e-171	495
Msa0298590	AT4G15320.5	47.778	540	258	10	2	529	4	531	3.81e-168	496
Msa0298590	AT4G15320.3	48.148	540	256	11	2	529	4	531	4.25e-168	496
Msa0298590	AT4G15320.4	46.847	555	256	12	2	529	4	546	9.16e-165	488
Msa0298590	AT4G15290.1	49.493	493	226	9	49	529	51	532	4.04e-164	485
Msa0298590	AT2G32610.1	47.004	534	262	8	8	529	10	534	2.34e-160	476

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Find 136 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATGCAACAAACCAA+GGG	0.644998	2_3:+52663555	None:intergenic
AAATCATTCAACCATAATCA+AGG	0.521264	2_3:-52662208	Msa0298590:intron
AAATGCAACAAACCAAGGGA+AGG	0.591687	2_3:+52663559	None:intergenic
AAATTTAGAGGCTTCCACAA+GGG	0.639116	2_3:+52662881	None:intergenic
AACAAGGAAAATCTTCTAGA+TGG	0.388558	2_3:-52661154	Msa0298590:CDS
AACAGAAAAGATGGGCCTCG+GGG	0.692321	2_3:-52658867	Msa0298590:CDS
AACCAATCTTGATAAAATTC+TGG	0.248631	2_3:+52662756	None:intergenic
AACTCAAACAGAGAAAACAA+GGG	0.737012	2_3:+52663722	None:intergenic
AACTCTCCTACAAGAGGAAG+TGG	0.516770	2_3:+52662258	None:intergenic
AAGAAACGCCACTACAAAAT+TGG	0.280761	2_3:-52658165	Msa0298590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATTCTCATCTAGTAAG+AGG	-	chr2_3:52658120-52658139	Msa0298590:CDS	30.0%
TTACCAATACACCTTCTTTA+TGG	+	chr2_3:52658257-52658276	Msa0298580:intron	30.0%
AACTCAAACAGAGAAAACAA+GGG	+	chr2_3:52658292-52658311	Msa0298580:CDS	30.0%
AAAGAAATGCAACAAACCAA+GGG	+	chr2_3:52658459-52658478	Msa0298580:intron	30.0%
AATTGCTCATTCTCTTAACT+CGG	-	chr2_3:52658608-52658627	Msa0298590:intron	30.0%
TTGTTGAGAGTGAATTCATT+AGG	-	chr2_3:52659323-52659342	Msa0298590:CDS	30.0%
ATCGTATTATGTGACACATA+AGG	-	chr2_3:52659439-52659458	Msa0298590:intron	30.0%
CTTGATATGTACCTTGATTA+TGG	+	chr2_3:52659817-52659836	None:intergenic	30.0%
TGTGCTTGATCTGAAAAAAT+TGG	+	chr2_3:52659967-52659986	None:intergenic	30.0%
GTGGAAATATATTCAATAGG+TGG	+	chr2_3:52660402-52660421	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	52658109	52663924	52658109	ID=Msa0298590;Name=Msa0298590
chr2_3	mRNA	52658109	52663924	52658109	ID=Msa0298590-mRNA-1;Parent=Msa0298590;Name=Msa0298590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=207\|0.87\|0.77\|0.88\|1\|1\|9\|0\|554
chr2_3	exon	52658109	52658187	52658109	ID=Msa0298590-mRNA-1:exon:16852;Parent=Msa0298590-mRNA-1
chr2_3	exon	52658787	52659034	52658787	ID=Msa0298590-mRNA-1:exon:16851;Parent=Msa0298590-mRNA-1
chr2_3	exon	52659242	52659405	52659242	ID=Msa0298590-mRNA-1:exon:16850;Parent=Msa0298590-mRNA-1
chr2_3	exon	52660034	52660172	52660034	ID=Msa0298590-mRNA-1:exon:16849;Parent=Msa0298590-mRNA-1
chr2_3	exon	52660412	52660624	52660412	ID=Msa0298590-mRNA-1:exon:16848;Parent=Msa0298590-mRNA-1
chr2_3	exon	52661072	52661188	52661072	ID=Msa0298590-mRNA-1:exon:16847;Parent=Msa0298590-mRNA-1
chr2_3	exon	52662209	52662328	52662209	ID=Msa0298590-mRNA-1:exon:16846;Parent=Msa0298590-mRNA-1
chr2_3	exon	52662746	52663073	52662746	ID=Msa0298590-mRNA-1:exon:16845;Parent=Msa0298590-mRNA-1
chr2_3	exon	52663461	52663924	52663461	ID=Msa0298590-mRNA-1:exon:16844;Parent=Msa0298590-mRNA-1
chr2_3	five_prime_UTR	52663718	52663924	52663718	ID=Msa0298590-mRNA-1:five_prime_utr;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52663461	52663717	52663461	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52662746	52663073	52662746	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52662209	52662328	52662209	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52661072	52661188	52661072	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52660412	52660624	52660412	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52660034	52660172	52660034	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52659242	52659405	52659242	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52658787	52659034	52658787	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1
chr2_3	CDS	52658109	52658187	52658109	ID=Msa0298590-mRNA-1:cds;Parent=Msa0298590-mRNA-1

Gene Sequence

>Msa0298590

ATGGCCAATCAAAACCCTCTCCCTCTCTATGATAAAATTTTGTTGAAATACACATTTTCAAGAGTGATGGATTCCTTCACTTTGCTCTTCCTTCTCTTGCTTCTTGGTTACCGTATTTTATATATCAACAATTATCCCTTCCCTTGGTTTGTTGCATTTCTTTGTGAGTCATGGTTCACCTTCATTTGGGTTGTCACCATGAGCACCAAATGGAGTCCTGCATATACCATAACCCACCTAGACCGTCTCTTGCTCAGGGAACATGAGCTTCCAGCATTGGACTTGTTTGTGACAACGGCAGATCCAGTGCTAGAACCACCAATCATCACAGTGAATACAGTGTTGTCATTGTTGGCACTTGACTATCCAGCTAACAAGCTAGCATGCTATGTTTCTGATGATGGATGTTCACCTCTTACCTTTTATGCCCTTGTGGAAGCCTCTAAATTTGCTAAGCTTTGGGTACCTTTTTGTAAGAAATACAATGTACAAGTTAGAGCACCTTTTAGGTACTTTTGTGATGAGAATGCTGTAAGCAACATAGAAGAGTCACCAGAATTTTATCAAGATTGGTTAAGAATGAAGGAGGAATACGGGTACCTCAAGAGTAAAATTGAGAATGCAGCACAAAATCCACTTCCTCTTGTAGGAGAGTTCGCTATTTTCTCAAGCACACATCATAAAAATCATTCAACCATAATCAAGGTGATATGGGAGAACAAGGAAAATCTTCTAGATGGTTTGCCTCACATAATCTACATATCTAGAGAGAAAAAGTTAGATCATCCGCATCAATACAAGGCTGGTGCTATGAATGTGCTAACAAGAGTCTCTGGATTGATGACAAATGCCCCTTTCATCTTGAACTTAGATTGTGACATGTATGTGAACAATCCTAAGATTGCTCTACACGCCTTGTGCATTTTGTTAGATTCAAAAGGGGAAAAGGAAGTTGCATTTGTTCAATGTCCCCAACAATTCTATGATGGGCTAAAAGACGATCCTTTTGGAAATCAGCTCGTGGCATTGTTTGTGTACTTGGGGGGAGGGTTTGGAGGACTTCAAGGGATGCTATATGCAGGAACAAATTGCTTCCATAGAAGAAAAGTAATTTATGGCCTTTGTCCTGATCATGACATTCAAAATAGAAAGAAGGGTGATGATGTTGCCAACGAGATGGAAGTGGTATTTGGAACTTCAAAGAGATTTATTGAATCAGCTACTCATGCTTTGGAAGGCAAAACATCTACTCCTATTGATAACCTTTGTAACACTCTTGAGGCTGCAAAAAAAGTTGCTAGTTGCACATATGAATATGGCACTACCTGGGGCAAACAGGTGGGTTGGATGTATGGATCAACGTCGGAGGATGTACTTACTGGGTTGGACATTCATACAAGAGGATGGAGATCTGAAATGTGTTCACCAGATCCATTGGCCTTTATGGGTTGCTCACCTCAAGATAACATAGTAAGTATGATCCAACAGAAAAGATGGGCCTCGGGGTTGTTTGATACTCTACTGAGCAAGCACAATCCATTTTTGGGCTTTCTCTATGGTAAGCTTCAATTTAGAGAGGCTCTTGGAAGAAACGCCACTACAAAATTGGACAGTGAGATTAAGAATCCAGTTACTATGACAAACAAGCAAAACATCGAAACTTGA

Protein sequence

>Msa0298590

MANQNPLPLYDKILLKYTFSRVMDSFTLLFLLLLLGYRILYINNYPFPWFVAFLCESWFTFIWVVTMSTKWSPAYTITHLDRLLLREHELPALDLFVTTADPVLEPPIITVNTVLSLLALDYPANKLACYVSDDGCSPLTFYALVEASKFAKLWVPFCKKYNVQVRAPFRYFCDENAVSNIEESPEFYQDWLRMKEEYGYLKSKIENAAQNPLPLVGEFAIFSSTHHKNHSTIIKVIWENKENLLDGLPHIIYISREKKLDHPHQYKAGAMNVLTRVSGLMTNAPFILNLDCDMYVNNPKIALHALCILLDSKGEKEVAFVQCPQQFYDGLKDDPFGNQLVALFVYLGGGFGGLQGMLYAGTNCFHRRKVIYGLCPDHDIQNRKKGDDVANEMEVVFGTSKRFIESATHALEGKTSTPIDNLCNTLEAAKKVASCTYEYGTTWGKQVGWMYGSTSEDVLTGLDIHTRGWRSEMCSPDPLAFMGCSPQDNIVSMIQQKRWASGLFDTLLSKHNPFLGFLYGKLQFREALGRNATTKLDSEIKNPVTMTNKQNIET*