AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042500 MtrunA17_Chr1g0190941 97.409 579 15 0 1 579 1 579 0.0 1170
Msa0042500 MtrunA17_Chr3g0122151 31.380 529 324 10 41 562 82 578 5.56e-76 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042500 AT3G04870.3 83.119 545 86 1 35 579 20 558 0.0 964
Msa0042500 AT3G04870.1 83.119 545 86 1 35 579 20 558 0.0 964
Msa0042500 AT3G04870.4 83.119 545 86 1 35 579 20 558 0.0 964
Msa0042500 AT3G04870.2 83.119 545 86 1 35 579 20 558 0.0 964
Msa0042500 AT4G14210.1 32.179 491 294 9 72 554 93 552 1.41e-72 243
Msa0042500 AT4G14210.3 32.179 491 294 9 72 554 93 552 1.41e-72 243
Msa0042500 AT4G14210.2 32.179 491 294 9 72 554 93 552 1.41e-72 243

Find 184 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAGTAATCCTGTTCTT+TGG 0.221868 1_1:+73394818 Msa0042500:three_prime_UTR
ATCATTGGAGCTGGGCTTGC+TGG 0.256670 1_1:+73389951 Msa0042500:CDS
GGTTCGGCTTCGTTGCTCTT+TGG 0.276120 1_1:+73388829 Msa0042500:CDS
ATTGAGGGACATACGGAATT+TGG 0.279555 1_1:+73391048 Msa0042500:CDS
TTGTTTATACTTGTGAAATA+TGG 0.292318 1_1:+73394913 Msa0042500:three_prime_UTR
CTCTGCATCCCCACCTTAGA+TGG 0.296738 1_1:-73391960 None:intergenic
AGTGGCAAACAATGCAAATA+TGG 0.307203 1_1:-73391755 None:intergenic
CTTGAAATAATTTCTTCATT+TGG 0.308702 1_1:-73393470 None:intergenic
CTCTATCTGTGATGTACTTC+CGG 0.333710 1_1:-73391843 None:intergenic
ATGAAGTAATCCTGTTCTTT+GGG 0.338750 1_1:+73394819 Msa0042500:three_prime_UTR
AAGCTTAAAGTTGCTATCAT+TGG 0.354737 1_1:+73389936 Msa0042500:CDS
TTTAACCACAAATCAGCTTA+AGG 0.358549 1_1:+73390795 Msa0042500:CDS
CGGAAGTACATCACAGATAG+AGG 0.360487 1_1:+73391844 Msa0042500:CDS
GAAAATAGAATTAAGCACTA+TGG 0.361291 1_1:-73388661 None:intergenic
GATCCAGTTGCCTATGCCCT+TGG 0.363674 1_1:+73391691 Msa0042500:CDS
TCATTTGGCAAGGGCATGTA+TGG 0.366332 1_1:-73393455 None:intergenic
CCCTCGATGTAATAGTCTTC+AGG 0.368691 1_1:-73392648 None:intergenic
ACGCGGAAATCACATTGAAA+TGG 0.376818 1_1:+73390288 Msa0042500:CDS
GCTGAAACAGGTTCCATCTA+AGG 0.377434 1_1:+73391947 Msa0042500:intron
GATGGGAGCACTTATGTTAC+AGG 0.378354 1_1:+73392006 Msa0042500:CDS
TGGTCATCTGTTGTTAAAAT+CGG 0.386009 1_1:+73393661 Msa0042500:CDS
AGAGGAACGATAAATTTATA+TGG 0.392972 1_1:-73395073 None:intergenic
AACCCAAGGGCATAGGCAAC+TGG 0.393599 1_1:-73391694 None:intergenic
ATCCAGTTGCCTATGCCCTT+GGG 0.393795 1_1:+73391692 Msa0042500:CDS
ACTCGTGCGTGTGCCACCTT+TGG 0.393846 1_1:-73391653 None:intergenic
TGAGTTGAGTCTAGTATAAG+AGG 0.398814 1_1:+73394738 Msa0042500:exon
TTATATGAAATTTGCGGAAA+AGG 0.400377 1_1:+73394784 Msa0042500:three_prime_UTR
GCGATGTCCCTGGAATTAAA+AGG 0.400605 1_1:+73392272 Msa0042500:CDS
GACTTCTTTAATTCATTGTC+CGG 0.400789 1_1:+73388724 Msa0042500:CDS
TTCGGTCCTCGATAATGTTC+AGG 0.401785 1_1:-73389915 None:intergenic
TTCTGGCTCTTACACAAAAC+AGG 0.401890 1_1:+73393762 Msa0042500:CDS
TCCGGAGGAAATAGTCCTTT+TGG 0.404642 1_1:-73389891 None:intergenic
ATGTTGTTATGTGTAGGAAT+AGG 0.407695 1_1:-73388624 None:intergenic
ATGTCCCTCAATGCACCATC+TGG 0.410123 1_1:-73391037 None:intergenic
GTCAACTGCAGTCGAACTCT+TGG 0.410618 1_1:+73389977 Msa0042500:CDS
AGTTTGTGTGTGAGTGGTAG+TGG 0.413656 1_1:-73388494 None:intergenic
ATGGAAGGTGCAACCTTATC+CGG 0.415005 1_1:+73394607 Msa0042500:CDS
CCGTGTAATGGAGCCCCAAC+CGG 0.415657 1_1:-73390760 None:intergenic
AATTACCTTAAGCTGATTTG+TGG 0.418452 1_1:-73390800 None:intergenic
TATTTCAAGAGTAGCGAAAC+AGG 0.418943 1_1:+73393484 Msa0042500:CDS
TGAAGTTTGCCTGCCGGATA+AGG 0.421829 1_1:-73394620 None:intergenic
TCTAGTATAAGAGGAATTTA+CGG 0.422397 1_1:+73394747 Msa0042500:exon
TCAACAAGAGCTCTGACAAC+TGG 0.426518 1_1:-73391013 None:intergenic
CGCGGAAATCACATTGAAAT+GGG 0.426629 1_1:+73390289 Msa0042500:CDS
AACCTTTCAGCATCCGCAAA+AGG 0.426804 1_1:-73391792 None:intergenic
TAGAAATGAGAAGGGTATCT+TGG 0.433777 1_1:-73388599 None:intergenic
ATAAGAGGAATTTACGGATA+AGG 0.436575 1_1:+73394753 Msa0042500:exon
TATGTATCAGACTTATGATA+AGG 0.440470 1_1:+73390961 Msa0042500:intron
GTATCTTGGCTACGTAGGTT+GGG 0.441610 1_1:-73388585 None:intergenic
AAGGGAAGCCTCGGTCTTAG+TGG 0.441905 1_1:-73391773 None:intergenic
CTGAGATTGGTGAATTTGTC+TGG 0.442653 1_1:-73388554 None:intergenic
TATAAATTGTGATTCGTATC+CGG 0.445411 1_1:+73394940 Msa0042500:three_prime_UTR
ATGTCACACGCCCAAAGAAC+AGG 0.446083 1_1:-73394829 None:intergenic
ACTTCTAAACCTTGAGATGA+TGG 0.448031 1_1:-73393634 None:intergenic
CTCACACCTTTGTAAACAAA+GGG 0.458935 1_1:+73390559 Msa0042500:CDS
AAAGTTGCTATCATTGGAGC+TGG 0.460146 1_1:+73389942 Msa0042500:CDS
CCGGTTGGGGCTCCATTACA+CGG 0.461061 1_1:+73390760 Msa0042500:CDS
ATGATAGCAACTTTAAGCTT+CGG 0.461516 1_1:-73389933 None:intergenic
CTCAAGGTTTAGAAGTGACT+TGG 0.468098 1_1:+73393641 Msa0042500:CDS
TTGCTGGGGCTAGGTGGGTG+CGG 0.471726 1_1:+73390509 Msa0042500:intron
AATAATTTCTTCATTTGGCA+AGG 0.476215 1_1:-73393465 None:intergenic
ATATCAGCCTGCGATGTCCC+TGG 0.478030 1_1:+73392262 Msa0042500:intron
TCAGCCTATATCTGTGATGC+GGG 0.478524 1_1:+73394640 Msa0042500:CDS
CTGGCATTAACGATACATAA+TGG 0.478659 1_1:-73388368 None:intergenic
AATGCATTTATCCCGTGTAA+TGG 0.479235 1_1:-73390772 None:intergenic
TTTATTTGAGTGGCCCTATC+CGG 0.481283 1_1:+73391824 Msa0042500:CDS
GGGCCACTCAAATAAACATC+TGG 0.481392 1_1:-73391817 None:intergenic
GTAGATGCCACTATTGTCTC+TGG 0.481803 1_1:-73388387 None:intergenic
AGACACATAGCCACAAGGTT+CGG 0.488033 1_1:+73388813 Msa0042500:CDS
CCCATCAGAGTGGAGGGAAA+AGG 0.490856 1_1:+73392300 Msa0042500:CDS
GAAGCCGATGCTTATGTTGC+TGG 0.492399 1_1:+73392157 Msa0042500:CDS
GTCCCTCACGGTACAGAGAT+TGG 0.495906 1_1:-73393684 None:intergenic
CTGTGATGTACTTCCGGATA+GGG 0.500954 1_1:-73391837 None:intergenic
ATCAGATGTGTTCTGACGCC+AGG 0.501293 1_1:+73393428 Msa0042500:intron
ACTCGTGCTGGAGATTCTGT+TGG 0.501847 1_1:+73388764 Msa0042500:CDS
GGTATCTTGGCTACGTAGGT+TGG 0.505135 1_1:-73388586 None:intergenic
AAATATGGTGAGCATGCAAC+GGG 0.505912 1_1:-73391740 None:intergenic
TCACTCTCTGCTACTCGTGC+TGG 0.509176 1_1:+73388752 Msa0042500:CDS
GTAGCAGAGAGTGAAGTTGC+CGG 0.509893 1_1:-73388743 None:intergenic
GAGCTTCTTGCACAGTCTAA+AGG 0.512258 1_1:+73394688 Msa0042500:CDS
AATAGGAATAGAAATGAGAA+GGG 0.514637 1_1:-73388607 None:intergenic
TCACCAGATGTTTATTTGAG+TGG 0.514814 1_1:+73391814 Msa0042500:CDS
TTGGGAGGAGATGCTGAGAT+TGG 0.517534 1_1:-73388567 None:intergenic
GTCAAGTTATATGAAATTTG+CGG 0.517734 1_1:+73394778 Msa0042500:three_prime_UTR
AAGGGCATGTATGGATCTCC+TGG 0.521092 1_1:-73393446 None:intergenic
TACAGGACTTTCCTTGTCAA+AGG 0.522929 1_1:+73392023 Msa0042500:CDS
CGTGTAATGGAGCCCCAACC+GGG 0.524152 1_1:-73390759 None:intergenic
CCTCGATAATGTTCAGGCTC+CGG 0.524827 1_1:-73389909 None:intergenic
GTACAGTGATCACTTCCTCC+AGG 0.527624 1_1:-73395025 None:intergenic
GATGTGAAAACCGACTTAGT+TGG 0.528115 1_1:-73388694 None:intergenic
TGATCCAGATGGTGCATTGA+GGG 0.528957 1_1:+73391033 Msa0042500:CDS
TCAGACTGGTTTATGTCCAA+AGG 0.529696 1_1:+73391637 Msa0042500:CDS
AGATAATAATGAGATAATCC+TGG 0.532859 1_1:+73395007 Msa0042500:three_prime_UTR
ACTTTCATGCCAGCACCAAA+AGG 0.533509 1_1:+73389876 Msa0042500:intron
GAATAGGAATAGAAATGAGA+AGG 0.537609 1_1:-73388608 None:intergenic
TTACTTATGTTGTTATGTGT+AGG 0.537964 1_1:-73388630 None:intergenic
ATAATTTCTTCATTTGGCAA+GGG 0.539005 1_1:-73393464 None:intergenic
GCAGTCGAACTCTTGGATCA+AGG 0.540059 1_1:+73389984 Msa0042500:CDS
TGCAACTCAGATACAATGGT+TGG 0.542316 1_1:+73392371 Msa0042500:CDS
CATCCGCAAAAGGGAAGCCT+CGG 0.544863 1_1:-73391782 None:intergenic
CTTTATGATAAATCTGCTGA+TGG 0.545887 1_1:+73391988 Msa0042500:CDS
ACTTTAGTTTGTTAGTTGAG+AGG 0.548901 1_1:-73388530 None:intergenic
GTCAATAAACCCAAGGGCAT+AGG 0.550109 1_1:-73391701 None:intergenic
ACCTTTCAGCATCCGCAAAA+GGG 0.553238 1_1:-73391791 None:intergenic
AGGCAACTGAAGAAAGCTAC+CGG 0.553730 1_1:+73392558 Msa0042500:intron
TCTGTGATGTACTTCCGGAT+AGG 0.554625 1_1:-73391838 None:intergenic
ATGGTGCATTGAGGGACATA+CGG 0.554758 1_1:+73391041 Msa0042500:CDS
GCAACTCAGATACAATGGTT+GGG 0.557255 1_1:+73392372 Msa0042500:CDS
ATTGTTAGTATTGCAGCAAG+TGG 0.561102 1_1:+73394888 Msa0042500:three_prime_UTR
CTGAGTTGCACTGTGACCAC+AGG 0.565771 1_1:-73392358 None:intergenic
ACCAAAAGGACTATTTCCTC+CGG 0.566476 1_1:+73389890 Msa0042500:CDS
AAGTTGCTATCATTGGAGCT+GGG 0.567873 1_1:+73389943 Msa0042500:CDS
ATAGACAATAATAACAGATG+TGG 0.568182 1_1:+73388465 Msa0042500:five_prime_UTR
TTTAATTCCAGGGACATCGC+AGG 0.571144 1_1:-73392269 None:intergenic
ATAGGCTGAAGTTTGCCTGC+CGG 0.573360 1_1:-73394626 None:intergenic
TCGTTGTTCCCATCATCTCA+AGG 0.573643 1_1:+73393625 Msa0042500:CDS
ATCTCATTATTATCTTAATG+CGG 0.574586 1_1:-73394999 None:intergenic
ACTCACACCTTTGTAAACAA+AGG 0.576174 1_1:+73390558 Msa0042500:CDS
CAAATATGGTGAGCATGCAA+CGG 0.576514 1_1:-73391741 None:intergenic
GCATTAAGAATGACAAAGAC+CGG 0.577256 1_1:-73394959 None:intergenic
GTTAATGCCAGAGACAATAG+TGG 0.578029 1_1:+73388380 Msa0042500:five_prime_UTR
GAAACAGGTTCCATCTAAGG+TGG 0.582717 1_1:+73391950 Msa0042500:intron
GGCTACCGAGAAGAAAATTG+TGG 0.583615 1_1:+73392135 Msa0042500:intron
AGAATTGGTGGCATTGCGGA+AGG 0.584021 1_1:+73394666 Msa0042500:CDS
CTTCTAAACCTTGAGATGAT+GGG 0.585413 1_1:-73393633 None:intergenic
TTCAGCCTATATCTGTGATG+CGG 0.586370 1_1:+73394639 Msa0042500:CDS
TGCAGAATCTAGAAATGTCA+AGG 0.588922 1_1:+73392404 Msa0042500:CDS
AATAACATATACGAACTCGT+TGG 0.589049 1_1:+73392331 Msa0042500:CDS
AGAGCTCTTGTTGATCCAGA+TGG 0.589565 1_1:+73391022 Msa0042500:CDS
TGGACTCAGTGCAAGAGCTA+CGG 0.590603 1_1:-73390993 None:intergenic
TGAATTAAAGAAGTCGTCAT+CGG 0.590723 1_1:-73388716 None:intergenic
ATAGAGAAGGTTGTCTAACC+CGG 0.591839 1_1:-73392577 None:intergenic
CGGTTGGGGCTCCATTACAC+GGG 0.591933 1_1:+73390761 Msa0042500:CDS
AAACAGGTTCCATCTAAGGT+GGG 0.592718 1_1:+73391951 Msa0042500:intron
GGTCTAAATGGATCTTTACC+AGG 0.593355 1_1:-73393706 None:intergenic
CGATAATGTTCAGGCTCCGG+AGG 0.594301 1_1:-73389906 None:intergenic
GGATAACAATCTACTTGTGA+AGG 0.594376 1_1:+73390530 Msa0042500:CDS
GGAAGTACATCACAGATAGA+GGG 0.594388 1_1:+73391845 Msa0042500:CDS
TAGACAATAATAACAGATGT+GGG 0.596893 1_1:+73388466 Msa0042500:five_prime_UTR
TTGATCCAGATGGTGCATTG+AGG 0.597130 1_1:+73391032 Msa0042500:CDS
AAGGTGCAACCTTATCCGGC+AGG 0.600316 1_1:+73394611 Msa0042500:CDS
ATTGTTTGCCACTAAGACCG+AGG 0.602157 1_1:+73391765 Msa0042500:CDS
CGCAAAGACACATAGCCACA+AGG 0.605752 1_1:+73388808 Msa0042500:CDS
TATCACAGTCAATAAACCCA+AGG 0.605846 1_1:-73391708 None:intergenic
GATTACATAGACAGCATGGA+AGG 0.607021 1_1:+73394592 Msa0042500:CDS
GTTACTCCCATCAGAGTGGA+GGG 0.607848 1_1:+73392294 Msa0042500:CDS
TCTCTGTACCGTGAGGGACC+TGG 0.607923 1_1:+73393688 Msa0042500:CDS
GGGAAGAATTGGTGGCATTG+CGG 0.610606 1_1:+73394662 Msa0042500:CDS
TTTATGATAAATCTGCTGAT+GGG 0.613858 1_1:+73391989 Msa0042500:CDS
CAGCCTATATCTGTGATGCG+GGG 0.614951 1_1:+73394641 Msa0042500:CDS
GACTATTACATCGAGGGACA+AGG 0.615874 1_1:+73392654 Msa0042500:CDS
CCTGAAGACTATTACATCGA+GGG 0.618138 1_1:+73392648 Msa0042500:CDS
AACAGGTTCCATCTAAGGTG+GGG 0.618751 1_1:+73391952 Msa0042500:intron
ATGTGTCTTTGCGAAACGTG+TGG 0.618912 1_1:-73388798 None:intergenic
ATCACAGTCAATAAACCCAA+GGG 0.619021 1_1:-73391707 None:intergenic
AGCCTATATCTGTGATGCGG+GGG 0.619252 1_1:+73394642 Msa0042500:CDS
GACTGGTTTATGTCCAAAGG+TGG 0.624860 1_1:+73391640 Msa0042500:CDS
CTAACCGTTGGTACTCATGT+CGG 0.626829 1_1:-73388864 None:intergenic
GGTTACTCCCATCAGAGTGG+AGG 0.630867 1_1:+73392293 Msa0042500:CDS
TCAGGATTACATAGACAGCA+TGG 0.632080 1_1:+73394588 Msa0042500:intron
GTTTCCGACATGAGTACCAA+CGG 0.632950 1_1:+73388860 Msa0042500:CDS
CTAACCAGCAACATAAGCAT+CGG 0.636070 1_1:-73392161 None:intergenic
GGCCAATCTCTGTACCGTGA+GGG 0.636229 1_1:+73393682 Msa0042500:CDS
GATCTTTACCAGGTCCCTCA+CGG 0.638059 1_1:-73393696 None:intergenic
TGTGTCTTTGCGAAACGTGT+GGG 0.639468 1_1:-73388797 None:intergenic
CTTGTGAGTTTGTGTGTGAG+TGG 0.640783 1_1:-73388500 None:intergenic
GGCAACTGAAGAAAGCTACC+GGG 0.645085 1_1:+73392559 Msa0042500:intron
CGAACTCGTTGGAGTTCCTG+TGG 0.646603 1_1:+73392342 Msa0042500:CDS
GGAAGTGATCACTGTACAAG+CGG 0.648807 1_1:+73395031 Msa0042500:three_prime_UTR
ACTCTTGGATCAAGGACATG+AGG 0.652064 1_1:+73389992 Msa0042500:CDS
TCTTGGCTACGTAGGTTGGG+AGG 0.658118 1_1:-73388582 None:intergenic
ACAGTGCAACTCAGATACAA+TGG 0.663291 1_1:+73392367 Msa0042500:CDS
GAAGTACATCACAGATAGAG+GGG 0.664359 1_1:+73391846 Msa0042500:CDS
AGCAACGAAGCCGAACCTTG+TGG 0.668845 1_1:-73388823 None:intergenic
CGGCCAATCTCTGTACCGTG+AGG 0.680928 1_1:+73393681 Msa0042500:CDS
AAAGGTTACTCCCATCAGAG+TGG 0.682957 1_1:+73392290 Msa0042500:CDS
TCCTGAAGACTATTACATCG+AGG 0.684522 1_1:+73392647 Msa0042500:CDS
GAAGGGTATCTTGGCTACGT+AGG 0.685766 1_1:-73388590 None:intergenic
AAAGTATATCACCTTTGACA+AGG 0.686346 1_1:-73392034 None:intergenic
CACACCTTTGTAAACAAAGG+GGG 0.694534 1_1:+73390561 Msa0042500:CDS
CCGGAGCCTGAACATTATCG+AGG 0.697521 1_1:+73389909 Msa0042500:CDS
AAGTACATCACAGATAGAGG+GGG 0.702330 1_1:+73391847 Msa0042500:CDS
TCACACCTTTGTAAACAAAG+GGG 0.705760 1_1:+73390560 Msa0042500:CDS
TAATAATGAGATAATCCTGG+AGG 0.715134 1_1:+73395010 Msa0042500:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAAAAAAAAAAAGT+TGG - chr1_1:73388905-73388924 None:intergenic 10.0%
!!! ATTGTAATTGTATTTATTTT+TGG - chr1_1:73389390-73389409 None:intergenic 10.0%
!! ATATCATAATATATTGAAAT+TGG + chr1_1:73390059-73390078 Msa0042500:intron 10.0%
!! AAATATCATTAAAAGAATAA+CGG - chr1_1:73393532-73393551 None:intergenic 10.0%
!! TTCCATTAACTAAAAAATAT+AGG + chr1_1:73388413-73388432 Msa0042500:five_prime_UTR 15.0%
!! AAAAAAAAAAAAAGTTGGAA+GGG - chr1_1:73388900-73388919 None:intergenic 15.0%
!!! TACATAAAACCTTATTTATT+TGG + chr1_1:73389544-73389563 Msa0042500:intron 15.0%
!! AATAATCAGGAAAATTTATT+TGG - chr1_1:73391107-73391126 None:intergenic 15.0%
!!! TTTTCCTATAAGTATTTTTT+TGG - chr1_1:73392956-73392975 None:intergenic 15.0%
!! AAAAAAATACTTATAGGAAA+AGG + chr1_1:73392955-73392974 Msa0042500:intron 15.0%
!! AATATTATATGAACATATGT+TGG - chr1_1:73393366-73393385 None:intergenic 15.0%
!! AATAAAATAACAAACTTAGA+GGG - chr1_1:73393402-73393421 None:intergenic 15.0%
!! AAATAAAATAACAAACTTAG+AGG - chr1_1:73393403-73393422 None:intergenic 15.0%
!! GACATATCATAAATATTATA+TGG + chr1_1:73394146-73394165 Msa0042500:intron 15.0%
!! TATCATAAATATTATATGGA+TGG + chr1_1:73394150-73394169 Msa0042500:intron 15.0%
!!! GTCCTATATTTTTTAGTTAA+TGG - chr1_1:73388418-73388437 None:intergenic 20.0%
!! CAAAAAAAAAAAAAGTTGGA+AGG - chr1_1:73388901-73388920 None:intergenic 20.0%
!!! TGTATTTATTTTTGGAAACT+TGG - chr1_1:73389382-73389401 None:intergenic 20.0%
!! ACAATTACAATATGAATGTT+AGG + chr1_1:73389399-73389418 Msa0042500:intron 20.0%
!! CAATTACAATATGAATGTTA+GGG + chr1_1:73389400-73389419 Msa0042500:intron 20.0%
!! TAAGCTTATCCAAATAAATA+AGG - chr1_1:73389556-73389575 None:intergenic 20.0%
!! TTTGGATAAGCTTAAAAATA+AGG + chr1_1:73389562-73389581 Msa0042500:intron 20.0%
!!! TTTGTCTATTTTTGTATTGA+TGG + chr1_1:73390029-73390048 Msa0042500:intron 20.0%
!! ATTGAAATTGGATGTTATTA+TGG + chr1_1:73390071-73390090 Msa0042500:intron 20.0%
!!! ATGGATTGATATGATAAAAA+TGG - chr1_1:73390466-73390485 None:intergenic 20.0%
!! TTATCATATCAATCCATAAT+CGG + chr1_1:73390469-73390488 Msa0042500:intron 20.0%
!! AAGAAAAATTAATCCGATTA+TGG - chr1_1:73390485-73390504 None:intergenic 20.0%
!! TTATGAATAAACGATAGTTT+CGG + chr1_1:73390686-73390705 Msa0042500:intron 20.0%
!! AATTTGGATAGTTATAGTAA+TGG - chr1_1:73391901-73391920 None:intergenic 20.0%
!!! ATTTAAAATCTTTACATGCT+TGG + chr1_1:73392066-73392085 Msa0042500:intron 20.0%
!! GAAATAAACATTAAGACTTT+CGG - chr1_1:73392111-73392130 None:intergenic 20.0%
!!! ATATTTTGTTTTCAAGAACA+AGG + chr1_1:73392471-73392490 Msa0042500:intron 20.0%
!! AATTACACAATAATGATCAA+AGG - chr1_1:73392509-73392528 None:intergenic 20.0%
!!! GAACTTATATTTAAGATGAT+CGG + chr1_1:73392777-73392796 Msa0042500:intron 20.0%
!! CTTTCCAAAAAAATACTTAT+AGG + chr1_1:73392949-73392968 Msa0042500:intron 20.0%
!! AATACTTTATAAGTTCCTAT+TGG + chr1_1:73393172-73393191 Msa0042500:intron 20.0%
!! CTTGAAATAATTTCTTCATT+TGG - chr1_1:73393473-73393492 None:intergenic 20.0%
!!! TTCATTATCGATTTAGTAAA+TGG + chr1_1:73393551-73393570 Msa0042500:intron 20.0%
!!! TGATTTTAAAAATCGTTATC+AGG + chr1_1:73393597-73393616 Msa0042500:intron 20.0%
!! TCTATAATTTCTTGCATATA+TGG + chr1_1:73393915-73393934 Msa0042500:intron 20.0%
!! GCATATGAAAAAAAAATACA+AGG + chr1_1:73394213-73394232 Msa0042500:intron 20.0%
!! CTAGATAAAATAATAGAAGT+CGG - chr1_1:73394543-73394562 None:intergenic 20.0%
!! TTGTTTATACTTGTGAAATA+TGG + chr1_1:73394913-73394932 Msa0042500:three_prime_UTR 20.0%
!! ATCTCATTATTATCTTAATG+CGG - chr1_1:73395002-73395021 None:intergenic 20.0%
! ATAGACAATAATAACAGATG+TGG + chr1_1:73388465-73388484 Msa0042500:five_prime_UTR 25.0%
! TAGACAATAATAACAGATGT+GGG + chr1_1:73388466-73388485 Msa0042500:five_prime_UTR 25.0%
! AATAGGAATAGAAATGAGAA+GGG - chr1_1:73388610-73388629 None:intergenic 25.0%
! TTACTTATGTTGTTATGTGT+AGG - chr1_1:73388633-73388652 None:intergenic 25.0%
! GAAAATAGAATTAAGCACTA+TGG - chr1_1:73388664-73388683 None:intergenic 25.0%
!!! TTTTGTTTTTCCAACTAAGT+CGG + chr1_1:73388684-73388703 Msa0042500:five_prime_UTR 25.0%
!!! TTTTCTAGCATCATGAATTT+TGG + chr1_1:73388932-73388951 Msa0042500:intron 25.0%
! TTGCTTATGTGAAAACAATT+TGG - chr1_1:73389045-73389064 None:intergenic 25.0%
! CTTAGAAAGCTTATGTAAAT+CGG + chr1_1:73389071-73389090 Msa0042500:intron 25.0%
! TTAATAGAGTAGCACATTAT+GGG - chr1_1:73389178-73389197 None:intergenic 25.0%
! ATTAATAGAGTAGCACATTA+TGG - chr1_1:73389179-73389198 None:intergenic 25.0%
! TTAAATAAGTCAATCCAAAC+AGG - chr1_1:73389426-73389445 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1_1:73389526-73389545 None:intergenic 25.0%
!! ATTTTCACATGAATTGTTGA+TGG + chr1_1:73389665-73389684 Msa0042500:intron 25.0%
!! TTTTCACATGAATTGTTGAT+GGG + chr1_1:73389666-73389685 Msa0042500:intron 25.0%
!! GATTTTGCATGAATTGTTAA+TGG + chr1_1:73389711-73389730 Msa0042500:intron 25.0%
!!! GAATTGTTAATGGATTTTGT+TGG + chr1_1:73389721-73389740 Msa0042500:intron 25.0%
! TACAAAAATAGACAAAGAGA+AGG - chr1_1:73390025-73390044 None:intergenic 25.0%
!!! TGTTTACCTTTTTCAATAGT+CGG - chr1_1:73390351-73390370 None:intergenic 25.0%
!!! TATTCTCTTTCCCTATTTTT+TGG + chr1_1:73390408-73390427 Msa0042500:intron 25.0%
! TACAAGTATGCCAAAAAATA+GGG - chr1_1:73390421-73390440 None:intergenic 25.0%
! TATGTATCAGACTTATGATA+AGG + chr1_1:73390961-73390980 Msa0042500:intron 25.0%
!! GTGTAAGAGGATAATATTTT+TGG + chr1_1:73391074-73391093 Msa0042500:intron 25.0%
! CAGGAAAATTTATTTGGAAA+TGG - chr1_1:73391101-73391120 None:intergenic 25.0%
! TTTATGATAAATCTGCTGAT+GGG + chr1_1:73391989-73392008 Msa0042500:CDS 25.0%
!!! TAAGAGCATTTTTGTAAGTT+AGG + chr1_1:73393108-73393127 Msa0042500:intron 25.0%
! ATAATTTCTTCATTTGGCAA+GGG - chr1_1:73393467-73393486 None:intergenic 25.0%
! AATAATTTCTTCATTTGGCA+AGG - chr1_1:73393468-73393487 None:intergenic 25.0%
!! GAAAGAAAGAAATTTTTCAC+TGG - chr1_1:73393745-73393764 None:intergenic 25.0%
! GTGAAAAATTTCTTTCTTTC+TGG + chr1_1:73393745-73393764 Msa0042500:CDS 25.0%
!! TTTTACTCGTAATAGTTTAC+TGG + chr1_1:73394191-73394210 Msa0042500:intron 25.0%
! AATCAACTGGAAAATAAAGT+TGG - chr1_1:73394421-73394440 None:intergenic 25.0%
! AGAAAACATATTGTAATTGC+AGG - chr1_1:73394475-73394494 None:intergenic 25.0%
! TCTAGTATAAGAGGAATTTA+CGG + chr1_1:73394747-73394766 Msa0042500:exon 25.0%
! GTCAAGTTATATGAAATTTG+CGG + chr1_1:73394778-73394797 Msa0042500:three_prime_UTR 25.0%
! TTATATGAAATTTGCGGAAA+AGG + chr1_1:73394784-73394803 Msa0042500:three_prime_UTR 25.0%
! TATAAATTGTGATTCGTATC+CGG + chr1_1:73394940-73394959 Msa0042500:three_prime_UTR 25.0%
! AGATAATAATGAGATAATCC+TGG + chr1_1:73395007-73395026 Msa0042500:three_prime_UTR 25.0%
!! ACTTTAGTTTGTTAGTTGAG+AGG - chr1_1:73388533-73388552 None:intergenic 30.0%
GAATAGGAATAGAAATGAGA+AGG - chr1_1:73388611-73388630 None:intergenic 30.0%
ATGTTGTTATGTGTAGGAAT+AGG - chr1_1:73388627-73388646 None:intergenic 30.0%
TGAATTAAAGAAGTCGTCAT+CGG - chr1_1:73388719-73388738 None:intergenic 30.0%
GACTTCTTTAATTCATTGTC+CGG + chr1_1:73388724-73388743 Msa0042500:CDS 30.0%
CGATTTACATAAGCTTTCTA+AGG - chr1_1:73389073-73389092 None:intergenic 30.0%
TGTAAATCGGATAAGTCATA+AGG + chr1_1:73389084-73389103 Msa0042500:intron 30.0%
AATTACAATATGAAACCCAC+TGG + chr1_1:73389201-73389220 Msa0042500:intron 30.0%
ATTACAATATGAAACCCACT+GGG + chr1_1:73389202-73389221 Msa0042500:intron 30.0%
!! ATTTTTGGAAACTTGGTATC+CGG - chr1_1:73389375-73389394 None:intergenic 30.0%
!! TCGTTTTGTTCGTATATCAA+GGG - chr1_1:73389601-73389620 None:intergenic 30.0%
!! TTCGTTTTGTTCGTATATCA+AGG - chr1_1:73389602-73389621 None:intergenic 30.0%
TATACGAACAAAACGAACTA+TGG + chr1_1:73389605-73389624 Msa0042500:intron 30.0%
! ATGATATTCAGGTTCTACAT+GGG + chr1_1:73389765-73389784 Msa0042500:intron 30.0%
TAGGAAATGTTACATAGAGT+TGG - chr1_1:73389831-73389850 None:intergenic 30.0%
! TTGTGTCAAATTTTCAGCTT+AGG - chr1_1:73389850-73389869 None:intergenic 30.0%
ATGATAGCAACTTTAAGCTT+CGG - chr1_1:73389936-73389955 None:intergenic 30.0%
AAGCTTAAAGTTGCTATCAT+TGG + chr1_1:73389936-73389955 Msa0042500:CDS 30.0%
! TGTGTTTTCCTTTGTAATCA+TGG + chr1_1:73390141-73390160 Msa0042500:intron 30.0%
ATTTAGCACCATGATTACAA+AGG - chr1_1:73390152-73390171 None:intergenic 30.0%
AATACATTAGCCAGATATCT+TGG - chr1_1:73390178-73390197 None:intergenic 30.0%
! TTTTCAATGTTCTCTCATTC+AGG + chr1_1:73390207-73390226 Msa0042500:intron 30.0%
! TACGAGTCAAGATCTTTTAT+TGG + chr1_1:73390238-73390257 Msa0042500:CDS 30.0%
! TCTTTTCCGACTATTGAAAA+AGG + chr1_1:73390342-73390361 Msa0042500:CDS 30.0%
GTACAAGTATGCCAAAAAAT+AGG - chr1_1:73390422-73390441 None:intergenic 30.0%
AATGTGAACAAAATGAAGCA+AGG - chr1_1:73390625-73390644 None:intergenic 30.0%
TTTAACCACAAATCAGCTTA+AGG + chr1_1:73390795-73390814 Msa0042500:CDS 30.0%
!! AATTACCTTAAGCTGATTTG+TGG - chr1_1:73390803-73390822 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG - chr1_1:73391270-73391289 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG - chr1_1:73391317-73391336 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG - chr1_1:73391270-73391289 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG - chr1_1:73391317-73391336 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG - chr1_1:73391270-73391289 None:intergenic 30.0%
AAGACTAGAATTCGACATTA+AGG - chr1_1:73391582-73391601 None:intergenic 30.0%
CTATTAAATGCATTTCTTGC+AGG + chr1_1:73391606-73391625 Msa0042500:intron 30.0%
CACGAGTATTCAAAAAATGT+GGG + chr1_1:73391669-73391688 Msa0042500:CDS 30.0%
AATGAATGAGAACCTACATA+GGG - chr1_1:73391927-73391946 None:intergenic 30.0%
CTTTATGATAAATCTGCTGA+TGG + chr1_1:73391988-73392007 Msa0042500:CDS 30.0%
AAAGTATATCACCTTTGACA+AGG - chr1_1:73392037-73392056 None:intergenic 30.0%
GTCTTAATGTTTATTTCCTC+AGG + chr1_1:73392114-73392133 Msa0042500:intron 30.0%
TGAGATCAATACAAAAACCA+GGG - chr1_1:73392198-73392217 None:intergenic 30.0%
ATGAGATCAATACAAAAACC+AGG - chr1_1:73392199-73392218 None:intergenic 30.0%
ATCAAGTCAATGATAGGTTA+AGG - chr1_1:73392244-73392263 None:intergenic 30.0%
AAAGCAAGAAAAATCTGCAT+CGG - chr1_1:73392607-73392626 None:intergenic 30.0%
TAATTCATGTAGTGCTAGTT+TGG + chr1_1:73392921-73392940 Msa0042500:intron 30.0%
TAGGAACCAAATACTTACAA+TGG + chr1_1:73393127-73393146 Msa0042500:intron 30.0%
AGGAACCAAATACTTACAAT+GGG + chr1_1:73393128-73393147 Msa0042500:intron 30.0%
ATAGTCCCATTGTAAGTATT+TGG - chr1_1:73393136-73393155 None:intergenic 30.0%
CTTTATTAAACGCTACCAAT+AGG - chr1_1:73393190-73393209 None:intergenic 30.0%
ATTGTTGAAAATGACAACAG+TGG - chr1_1:73393228-73393247 None:intergenic 30.0%
TTGCAATGAGAGGAAAAAAA+AGG - chr1_1:73393341-73393360 None:intergenic 30.0%
TGGTCATCTGTTGTTAAAAT+CGG + chr1_1:73393661-73393680 Msa0042500:CDS 30.0%
! AATTTTTCACTGGTGTCTTT+TGG - chr1_1:73393735-73393754 None:intergenic 30.0%
AAACATATGAGACCTTATAG+AGG + chr1_1:73393882-73393901 Msa0042500:intron 30.0%
! ATGAGGTATTTCACATAAGA+TGG - chr1_1:73394061-73394080 None:intergenic 30.0%
! ATTTCCTCGTCACATATTTT+AGG + chr1_1:73394089-73394108 Msa0042500:intron 30.0%
AAAACCTAAAATATGTGACG+AGG - chr1_1:73394096-73394115 None:intergenic 30.0%
TAACAGAAGTTTGTATTAGC+AGG + chr1_1:73394261-73394280 Msa0042500:intron 30.0%
TAATATTCCACTTTCAACTG+AGG + chr1_1:73394330-73394349 Msa0042500:intron 30.0%
GCTTGCTCAAATTTATCAAA+CGG + chr1_1:73394358-73394377 Msa0042500:intron 30.0%
CTGAAATGTTTAATCTGTTC+AGG + chr1_1:73394570-73394589 Msa0042500:intron 30.0%
ATAAGAGGAATTTACGGATA+AGG + chr1_1:73394753-73394772 Msa0042500:exon 30.0%
TATGAAGTAATCCTGTTCTT+TGG + chr1_1:73394818-73394837 Msa0042500:three_prime_UTR 30.0%
ATGAAGTAATCCTGTTCTTT+GGG + chr1_1:73394819-73394838 Msa0042500:three_prime_UTR 30.0%
TAATAATGAGATAATCCTGG+AGG + chr1_1:73395010-73395029 Msa0042500:three_prime_UTR 30.0%
CTGGCATTAACGATACATAA+TGG - chr1_1:73388371-73388390 None:intergenic 35.0%
!! TAGAAATGAGAAGGGTATCT+TGG - chr1_1:73388602-73388621 None:intergenic 35.0%
GGAAATCTATTACTAACCGT+TGG - chr1_1:73388879-73388898 None:intergenic 35.0%
!! ACGTTTAATTTTGCTGTGCT+TGG + chr1_1:73388959-73388978 Msa0042500:intron 35.0%
TTACAATATGAAACCCACTG+GGG + chr1_1:73389203-73389222 Msa0042500:intron 35.0%
AGATGTTGTAAGACAGACTT+GGG + chr1_1:73389232-73389251 Msa0042500:intron 35.0%
CTAAGGACTAACTAATCTGA+GGG - chr1_1:73389351-73389370 None:intergenic 35.0%
!! CGTTTTGTTCGTATATCAAG+GGG - chr1_1:73389600-73389619 None:intergenic 35.0%
! GATGATATTCAGGTTCTACA+TGG + chr1_1:73389764-73389783 Msa0042500:intron 35.0%
! GAGTCAAGATCTTTTATTGG+TGG + chr1_1:73390241-73390260 Msa0042500:CDS 35.0%
!! TCTTTTATTGGTGGCAAAGT+TGG + chr1_1:73390250-73390269 Msa0042500:CDS 35.0%
!! GGTTCTTTTGTTGATAAACG+CGG + chr1_1:73390271-73390290 Msa0042500:CDS 35.0%
! ATGGGATTGCATGTTTTCTT+TGG + chr1_1:73390307-73390326 Msa0042500:CDS 35.0%
AAAGAGAATACGACTGAAGA+AGG - chr1_1:73390398-73390417 None:intergenic 35.0%
! TTAATTTTTCTTCGCCTTGC+TGG + chr1_1:73390493-73390512 Msa0042500:intron 35.0%
! TAATTTTTCTTCGCCTTGCT+GGG + chr1_1:73390494-73390513 Msa0042500:intron 35.0%
GGATAACAATCTACTTGTGA+AGG + chr1_1:73390530-73390549 Msa0042500:CDS 35.0%
ACTCACACCTTTGTAAACAA+AGG + chr1_1:73390558-73390577 Msa0042500:CDS 35.0%
CTCACACCTTTGTAAACAAA+GGG + chr1_1:73390559-73390578 Msa0042500:CDS 35.0%
TCACACCTTTGTAAACAAAG+GGG + chr1_1:73390560-73390579 Msa0042500:CDS 35.0%
TCATAAAAGTAGTGCTCTGA+TGG - chr1_1:73390672-73390691 None:intergenic 35.0%
AATGCATTTATCCCGTGTAA+TGG - chr1_1:73390775-73390794 None:intergenic 35.0%
AGCTAAGGAGACAAATAATC+AGG - chr1_1:73391120-73391139 None:intergenic 35.0%
!! TGTCTCCTTAGCTTTGTATT+TGG + chr1_1:73391127-73391146 Msa0042500:intron 35.0%
GCATGTGTGATGTGAATATT+TGG - chr1_1:73391193-73391212 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG + chr1_1:73391220-73391239 Msa0042500:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG + chr1_1:73391231-73391250 Msa0042500:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG - chr1_1:73391257-73391276 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG - chr1_1:73391300-73391319 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG + chr1_1:73391220-73391239 Msa0042500:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG - chr1_1:73391257-73391276 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG - chr1_1:73391300-73391319 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG + chr1_1:73391220-73391239 Msa0042500:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG + chr1_1:73391231-73391250 Msa0042500:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG - chr1_1:73391257-73391276 None:intergenic 35.0%
ATACTGACAAACATGGTACA+AGG - chr1_1:73391555-73391574 None:intergenic 35.0%
ACTAGAATTCGACATTAAGG+CGG - chr1_1:73391579-73391598 None:intergenic 35.0%
GCACGAGTATTCAAAAAATG+TGG + chr1_1:73391668-73391687 Msa0042500:CDS 35.0%
ATCACAGTCAATAAACCCAA+GGG - chr1_1:73391710-73391729 None:intergenic 35.0%
TATCACAGTCAATAAACCCA+AGG - chr1_1:73391711-73391730 None:intergenic 35.0%
AGTGGCAAACAATGCAAATA+TGG - chr1_1:73391758-73391777 None:intergenic 35.0%
TCACCAGATGTTTATTTGAG+TGG + chr1_1:73391814-73391833 Msa0042500:CDS 35.0%
ATCCAAATTTCTCCCTATGT+AGG + chr1_1:73391912-73391931 Msa0042500:intron 35.0%
AACCTACATAGGGAGAAATT+TGG - chr1_1:73391917-73391936 None:intergenic 35.0%
CAATGAATGAGAACCTACAT+AGG - chr1_1:73391928-73391947 None:intergenic 35.0%
TTCTCATTCATTGCTGAAAC+AGG + chr1_1:73391935-73391954 Msa0042500:intron 35.0%
GCTGATATCAAGTCAATGAT+AGG - chr1_1:73392250-73392269 None:intergenic 35.0%
!! GGAGTAACCTTTTAATTCCA+GGG - chr1_1:73392282-73392301 None:intergenic 35.0%
TGCAGAATCTAGAAATGTCA+AGG + chr1_1:73392404-73392423 Msa0042500:CDS 35.0%
! AGAAATGTCAAGGTACTTCT+CGG + chr1_1:73392414-73392433 Msa0042500:intron 35.0%
!! AAGGTACTTCTCGGAATTTT+AGG + chr1_1:73392423-73392442 Msa0042500:intron 35.0%
AAGCAAGAAAAATCTGCATC+GGG - chr1_1:73392606-73392625 None:intergenic 35.0%
TCAACGTAAACATCACTTAC+TGG - chr1_1:73392689-73392708 None:intergenic 35.0%
AGAGTCTTCTGTGAGTTTAT+TGG + chr1_1:73392732-73392751 Msa0042500:intron 35.0%
GAGTCTTCTGTGAGTTTATT+GGG + chr1_1:73392733-73392752 Msa0042500:intron 35.0%
ATTGTTGGAAATGGTTACAG+TGG - chr1_1:73392826-73392845 None:intergenic 35.0%
TGAGCGTAAATTGTTGGAAA+TGG - chr1_1:73392835-73392854 None:intergenic 35.0%
GTGATTTGAGCGTAAATTGT+TGG - chr1_1:73392841-73392860 None:intergenic 35.0%
TGCATAACATACTTAGTCGT+GGG - chr1_1:73392863-73392882 None:intergenic 35.0%
TTGCATAACATACTTAGTCG+TGG - chr1_1:73392864-73392883 None:intergenic 35.0%
CGACTAAGTATGTTATGCAA+TGG + chr1_1:73392864-73392883 Msa0042500:intron 35.0%
! GAGAGCTTCTAAAAAAGTTG+AGG - chr1_1:73393058-73393077 None:intergenic 35.0%
CTCATGACTATGTTATGCAA+TGG + chr1_1:73393263-73393282 Msa0042500:intron 35.0%
GGAGAAAAAAACAGTAAAGC+TGG - chr1_1:73393320-73393339 None:intergenic 35.0%
TATTTCAAGAGTAGCGAAAC+AGG + chr1_1:73393484-73393503 Msa0042500:CDS 35.0%
CAGGTAGTTTAAACAATGTG+TGG + chr1_1:73393503-73393522 Msa0042500:intron 35.0%
CTTCTAAACCTTGAGATGAT+GGG - chr1_1:73393636-73393655 None:intergenic 35.0%
ACTTCTAAACCTTGAGATGA+TGG - chr1_1:73393637-73393656 None:intergenic 35.0%
TATAATGGTAGTCAAGAGGA+TGG - chr1_1:73393805-73393824 None:intergenic 35.0%
TAAGACAAGCACGAGTATAA+TGG - chr1_1:73393820-73393839 None:intergenic 35.0%
! GATTAACTGACTCCTCTATA+AGG - chr1_1:73393897-73393916 None:intergenic 35.0%
TACTCTTGACAATAAGTTCC+TGG + chr1_1:73393991-73394010 Msa0042500:intron 35.0%
TGTTGCTGCATTTGATTGAA+TGG + chr1_1:73394015-73394034 Msa0042500:intron 35.0%
GTTGCTGCATTTGATTGAAT+GGG + chr1_1:73394016-73394035 Msa0042500:intron 35.0%
TTGCTGCATTTGATTGAATG+GGG + chr1_1:73394017-73394036 Msa0042500:intron 35.0%
! TTGAATGGGGTATCAATTGT+CGG + chr1_1:73394030-73394049 Msa0042500:intron 35.0%
CTCAGAATGTTAGAATCAAC+TGG - chr1_1:73394434-73394453 None:intergenic 35.0%
! TGAGTTGAGTCTAGTATAAG+AGG + chr1_1:73394738-73394757 Msa0042500:exon 35.0%
ATTGTTAGTATTGCAGCAAG+TGG + chr1_1:73394888-73394907 Msa0042500:three_prime_UTR 35.0%
GCATTAAGAATGACAAAGAC+CGG - chr1_1:73394962-73394981 None:intergenic 35.0%
GTTAATGCCAGAGACAATAG+TGG + chr1_1:73388380-73388399 Msa0042500:five_prime_UTR 40.0%
CTGAGATTGGTGAATTTGTC+TGG - chr1_1:73388557-73388576 None:intergenic 40.0%
! GATGTGAAAACCGACTTAGT+TGG - chr1_1:73388697-73388716 None:intergenic 40.0%
CAAGTCTGTCTTACAACATC+TGG - chr1_1:73389233-73389252 None:intergenic 40.0%
CAGATGTTGTAAGACAGACT+TGG + chr1_1:73389231-73389250 Msa0042500:intron 40.0%
GGACAAAAATTGTTAGCACC+CGG - chr1_1:73389282-73389301 None:intergenic 40.0%
TGGCAATTGAATGTATGGAC+TGG - chr1_1:73389303-73389322 None:intergenic 40.0%
CCTAAGGACTAACTAATCTG+AGG - chr1_1:73389352-73389371 None:intergenic 40.0%
! CCTCAGATTAGTTAGTCCTT+AGG + chr1_1:73389349-73389368 Msa0042500:intron 40.0%
! AGATTAGTTAGTCCTTAGGC+CGG + chr1_1:73389353-73389372 Msa0042500:intron 40.0%
TATGAATGTTAGGGCCTGTT+TGG + chr1_1:73389409-73389428 Msa0042500:intron 40.0%
! GGATTTTGTTGGATGAGAAC+TGG + chr1_1:73389732-73389751 Msa0042500:intron 40.0%
GTTTGTGCTGGATGATATTC+AGG + chr1_1:73389754-73389773 Msa0042500:intron 40.0%
ACCAAAAGGACTATTTCCTC+CGG + chr1_1:73389890-73389909 Msa0042500:CDS 40.0%
AAAGTTGCTATCATTGGAGC+TGG + chr1_1:73389942-73389961 Msa0042500:CDS 40.0%
AAGTTGCTATCATTGGAGCT+GGG + chr1_1:73389943-73389962 Msa0042500:CDS 40.0%
GCTAAATGTGCCAAGATATC+TGG + chr1_1:73390165-73390184 Msa0042500:intron 40.0%
TCAATGTTCTCTCATTCAGG+TGG + chr1_1:73390210-73390229 Msa0042500:intron 40.0%
ACGCGGAAATCACATTGAAA+TGG + chr1_1:73390288-73390307 Msa0042500:CDS 40.0%
CGCGGAAATCACATTGAAAT+GGG + chr1_1:73390289-73390308 Msa0042500:CDS 40.0%
ACTGAAGAAGGACATGCATT+TGG - chr1_1:73390386-73390405 None:intergenic 40.0%
! AATTTTTCTTCGCCTTGCTG+GGG + chr1_1:73390495-73390514 Msa0042500:intron 40.0%
CACACCTTTGTAAACAAAGG+GGG + chr1_1:73390561-73390580 Msa0042500:CDS 40.0%
! TTGACCCCCTTTGTTTACAA+AGG - chr1_1:73390568-73390587 None:intergenic 40.0%
GTAAACAAAGGGGGTCAAAT+TGG + chr1_1:73390570-73390589 Msa0042500:CDS 40.0%
! AGAACTAGATTTTCGCTTCC+CGG + chr1_1:73390741-73390760 Msa0042500:intron 40.0%
!! TGTGCATGTTTTTGTCTCCT+TGG + chr1_1:73390901-73390920 Msa0042500:intron 40.0%
!! GTGCATGTTTTTGTCTCCTT+GGG + chr1_1:73390902-73390921 Msa0042500:intron 40.0%
!! TGCATGTTTTTGTCTCCTTG+GGG + chr1_1:73390903-73390922 Msa0042500:intron 40.0%
ATTGAGGGACATACGGAATT+TGG + chr1_1:73391048-73391067 Msa0042500:CDS 40.0%
CGGAATTTGGATAGTGTAAG+AGG + chr1_1:73391061-73391080 Msa0042500:intron 40.0%
GTCGTCCAAATACAAAGCTA+AGG - chr1_1:73391135-73391154 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG - chr1_1:73391217-73391236 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG - chr1_1:73391218-73391237 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG - chr1_1:73391217-73391236 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG - chr1_1:73391218-73391237 None:intergenic 40.0%
! AAACGGAACTTTTGATGCCT+TGG + chr1_1:73391368-73391387 Msa0042500:intron 40.0%
CCATTTGCTCCTTTGTATGT+GGG - chr1_1:73391217-73391236 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG - chr1_1:73391218-73391237 None:intergenic 40.0%
!! TCAGACTGGTTTATGTCCAA+AGG + chr1_1:73391637-73391656 Msa0042500:CDS 40.0%
AAATATGGTGAGCATGCAAC+GGG - chr1_1:73391743-73391762 None:intergenic 40.0%
CAAATATGGTGAGCATGCAA+CGG - chr1_1:73391744-73391763 None:intergenic 40.0%
TTTATTTGAGTGGCCCTATC+CGG + chr1_1:73391824-73391843 Msa0042500:CDS 40.0%
CTCTATCTGTGATGTACTTC+CGG - chr1_1:73391846-73391865 None:intergenic 40.0%
! GGAAGTACATCACAGATAGA+GGG + chr1_1:73391845-73391864 Msa0042500:CDS 40.0%
GAAGTACATCACAGATAGAG+GGG + chr1_1:73391846-73391865 Msa0042500:CDS 40.0%
AAGTACATCACAGATAGAGG+GGG + chr1_1:73391847-73391866 Msa0042500:CDS 40.0%
! AAACAGGTTCCATCTAAGGT+GGG + chr1_1:73391951-73391970 Msa0042500:intron 40.0%
TACAGGACTTTCCTTGTCAA+AGG + chr1_1:73392023-73392042 Msa0042500:CDS 40.0%
! GGCTTCCACAATTTTCTTCT+CGG - chr1_1:73392143-73392162 None:intergenic 40.0%
CTAACCAGCAACATAAGCAT+CGG - chr1_1:73392164-73392183 None:intergenic 40.0%
!! GGGAGTAACCTTTTAATTCC+AGG - chr1_1:73392283-73392302 None:intergenic 40.0%
ACAGTGCAACTCAGATACAA+TGG + chr1_1:73392367-73392386 Msa0042500:CDS 40.0%
TGCAACTCAGATACAATGGT+TGG + chr1_1:73392371-73392390 Msa0042500:CDS 40.0%
GCAACTCAGATACAATGGTT+GGG + chr1_1:73392372-73392391 Msa0042500:CDS 40.0%
CTTTACGAACCCTTACATTC+TGG + chr1_1:73392530-73392549 Msa0042500:intron 40.0%
ATAGAGAAGGTTGTCTAACC+CGG - chr1_1:73392580-73392599 None:intergenic 40.0%
AGCAAGAAAAATCTGCATCG+GGG - chr1_1:73392605-73392624 None:intergenic 40.0%
TCCTGAAGACTATTACATCG+AGG + chr1_1:73392647-73392666 Msa0042500:CDS 40.0%
CCTGAAGACTATTACATCGA+GGG + chr1_1:73392648-73392667 Msa0042500:CDS 40.0%
AAACTCACAGAAGACTCTCT+TGG - chr1_1:73392730-73392749 None:intergenic 40.0%
AATGGATGAAACTGCACCAT+CGG + chr1_1:73392882-73392901 Msa0042500:intron 40.0%
TTGCATCGTCAGTTCAACAT+AGG + chr1_1:73393286-73393305 Msa0042500:intron 40.0%
TATGTTGGACTTGCAATGAG+AGG - chr1_1:73393351-73393370 None:intergenic 40.0%
CTCAAGGTTTAGAAGTGACT+TGG + chr1_1:73393641-73393660 Msa0042500:CDS 40.0%
GGTCTAAATGGATCTTTACC+AGG - chr1_1:73393709-73393728 None:intergenic 40.0%
! GTCTTTTGGTCAGGTCTAAA+TGG - chr1_1:73393721-73393740 None:intergenic 40.0%
!! TTCTGGCTCTTACACAAAAC+AGG + chr1_1:73393762-73393781 Msa0042500:CDS 40.0%
CGAGTATAATGGTAGTCAAG+AGG - chr1_1:73393809-73393828 None:intergenic 40.0%
!!! GCAGCTGCTGATATTTTTTG+TGG + chr1_1:73393856-73393875 Msa0042500:intron 40.0%
AATCAAATGCAGCAACAACC+AGG - chr1_1:73394012-73394031 None:intergenic 40.0%
CGAGGAAATGCATGAATATG+AGG - chr1_1:73394078-73394097 None:intergenic 40.0%
! ACCTTTCCTTTTGAATACCG+TGG + chr1_1:73394386-73394405 Msa0042500:intron 40.0%
! CCTTTCCTTTTGAATACCGT+GGG + chr1_1:73394387-73394406 Msa0042500:intron 40.0%
TCTAAAGATTGCTGTGACAC+TGG - chr1_1:73394498-73394517 None:intergenic 40.0%
TCAGGATTACATAGACAGCA+TGG + chr1_1:73394588-73394607 Msa0042500:intron 40.0%
GATTACATAGACAGCATGGA+AGG + chr1_1:73394592-73394611 Msa0042500:CDS 40.0%
TTCAGCCTATATCTGTGATG+CGG + chr1_1:73394639-73394658 Msa0042500:CDS 40.0%
GTAGATGCCACTATTGTCTC+TGG - chr1_1:73388390-73388409 None:intergenic 45.0%
AGTTTGTGTGTGAGTGGTAG+TGG - chr1_1:73388497-73388516 None:intergenic 45.0%
CTTGTGAGTTTGTGTGTGAG+TGG - chr1_1:73388503-73388522 None:intergenic 45.0%
GTATCTTGGCTACGTAGGTT+GGG - chr1_1:73388588-73388607 None:intergenic 45.0%
TGTGTCTTTGCGAAACGTGT+GGG - chr1_1:73388800-73388819 None:intergenic 45.0%
ATGTGTCTTTGCGAAACGTG+TGG - chr1_1:73388801-73388820 None:intergenic 45.0%
AGACACATAGCCACAAGGTT+CGG + chr1_1:73388813-73388832 Msa0042500:CDS 45.0%
GTTTCCGACATGAGTACCAA+CGG + chr1_1:73388860-73388879 Msa0042500:CDS 45.0%
CTAACCGTTGGTACTCATGT+CGG - chr1_1:73388867-73388886 None:intergenic 45.0%
CTGCATAAGCACTTGTGAGA+TGG - chr1_1:73389127-73389146 None:intergenic 45.0%
AAGCTCAAGCCAATCCAACT+AGG + chr1_1:73389152-73389171 Msa0042500:intron 45.0%
CATTATGGGCCTAGTTGGAT+TGG - chr1_1:73389164-73389183 None:intergenic 45.0%
TAGCACATTATGGGCCTAGT+TGG - chr1_1:73389169-73389188 None:intergenic 45.0%
AATATGAAACCCACTGGGGT+TGG + chr1_1:73389207-73389226 Msa0042500:intron 45.0%
TGTAAGACAGACTTGGGACT+TGG + chr1_1:73389238-73389257 Msa0042500:intron 45.0%
GTAAGACAGACTTGGGACTT+GGG + chr1_1:73389239-73389258 Msa0042500:intron 45.0%
CAAAAATTGTTAGCACCCGG+AGG - chr1_1:73389279-73389298 None:intergenic 45.0%
TCGTATATCAAGGGGCTGTT+TGG - chr1_1:73389592-73389611 None:intergenic 45.0%
AGGTTCTACATGGGTCATGT+GGG + chr1_1:73389774-73389793 Msa0042500:intron 45.0%
ACTTTCATGCCAGCACCAAA+AGG + chr1_1:73389876-73389895 Msa0042500:intron 45.0%
!! GGAAATAGTCCTTTTGGTGC+TGG - chr1_1:73389888-73389907 None:intergenic 45.0%
! TCCGGAGGAAATAGTCCTTT+TGG - chr1_1:73389894-73389913 None:intergenic 45.0%
TTCGGTCCTCGATAATGTTC+AGG - chr1_1:73389918-73389937 None:intergenic 45.0%
ACTCTTGGATCAAGGACATG+AGG + chr1_1:73389992-73390011 Msa0042500:CDS 45.0%
AACAAAGGGGGTCAAATTGG+AGG + chr1_1:73390573-73390592 Msa0042500:CDS 45.0%
! TAGATTTTCGCTTCCCGGTT+GGG + chr1_1:73390746-73390765 Msa0042500:CDS 45.0%
ATCACGCAATCAGAGCAGTA+TGG - chr1_1:73390844-73390863 None:intergenic 45.0%
TACTGCTCTGATTGCGTGAT+TGG + chr1_1:73390844-73390863 Msa0042500:intron 45.0%
! TCAACAAGAGCTCTGACAAC+TGG - chr1_1:73391016-73391035 None:intergenic 45.0%
AGAGCTCTTGTTGATCCAGA+TGG + chr1_1:73391022-73391041 Msa0042500:CDS 45.0%
TTGATCCAGATGGTGCATTG+AGG + chr1_1:73391032-73391051 Msa0042500:CDS 45.0%
TGATCCAGATGGTGCATTGA+GGG + chr1_1:73391033-73391052 Msa0042500:CDS 45.0%
ATGGTGCATTGAGGGACATA+CGG + chr1_1:73391041-73391060 Msa0042500:CDS 45.0%
TGTGCATGCACATGTGCAAT+GGG - chr1_1:73391169-73391188 None:intergenic 45.0%
ATGTGCATGCACATGTGCAA+TGG - chr1_1:73391170-73391189 None:intergenic 45.0%
ACACATGCACCCACATACAA+AGG + chr1_1:73391205-73391224 Msa0042500:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG + chr1_1:73391214-73391233 Msa0042500:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG + chr1_1:73391237-73391256 Msa0042500:intron 45.0%
ACACATGCACCCACATACAA+AGG + chr1_1:73391205-73391224 Msa0042500:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG + chr1_1:73391214-73391233 Msa0042500:intron 45.0%
ACACATGCACCCACATACAA+AGG + chr1_1:73391205-73391224 Msa0042500:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG + chr1_1:73391214-73391233 Msa0042500:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG + chr1_1:73391237-73391256 Msa0042500:intron 45.0%
AGGCGGAATACTGACAAACA+TGG - chr1_1:73391562-73391581 None:intergenic 45.0%
!!! TGCAGGTTAGCTTTTCAGAC+TGG + chr1_1:73391623-73391642 Msa0042500:intron 45.0%
!! GACTGGTTTATGTCCAAAGG+TGG + chr1_1:73391640-73391659 Msa0042500:CDS 45.0%
! GTCAATAAACCCAAGGGCAT+AGG - chr1_1:73391704-73391723 None:intergenic 45.0%
ATTGTTTGCCACTAAGACCG+AGG + chr1_1:73391765-73391784 Msa0042500:CDS 45.0%
ACCTTTCAGCATCCGCAAAA+GGG - chr1_1:73391794-73391813 None:intergenic 45.0%
AACCTTTCAGCATCCGCAAA+AGG - chr1_1:73391795-73391814 None:intergenic 45.0%
GGGCCACTCAAATAAACATC+TGG - chr1_1:73391820-73391839 None:intergenic 45.0%
CTGTGATGTACTTCCGGATA+GGG - chr1_1:73391840-73391859 None:intergenic 45.0%
TCTGTGATGTACTTCCGGAT+AGG - chr1_1:73391841-73391860 None:intergenic 45.0%
! CGGAAGTACATCACAGATAG+AGG + chr1_1:73391844-73391863 Msa0042500:CDS 45.0%
GCTGAAACAGGTTCCATCTA+AGG + chr1_1:73391947-73391966 Msa0042500:intron 45.0%
GAAACAGGTTCCATCTAAGG+TGG + chr1_1:73391950-73391969 Msa0042500:intron 45.0%
! AACAGGTTCCATCTAAGGTG+GGG + chr1_1:73391952-73391971 Msa0042500:intron 45.0%
!! GATGGGAGCACTTATGTTAC+AGG + chr1_1:73392006-73392025 Msa0042500:CDS 45.0%
! ATTTTCTTCTCGGTAGCCTG+AGG - chr1_1:73392133-73392152 None:intergenic 45.0%
GGCTACCGAGAAGAAAATTG+TGG + chr1_1:73392135-73392154 Msa0042500:intron 45.0%
TTTAATTCCAGGGACATCGC+AGG - chr1_1:73392272-73392291 None:intergenic 45.0%
GCGATGTCCCTGGAATTAAA+AGG + chr1_1:73392272-73392291 Msa0042500:CDS 45.0%
AAAGGTTACTCCCATCAGAG+TGG + chr1_1:73392290-73392309 Msa0042500:CDS 45.0%
ACGAACCCTTACATTCTGGA+TGG + chr1_1:73392534-73392553 Msa0042500:intron 45.0%
AGGCAACTGAAGAAAGCTAC+CGG + chr1_1:73392558-73392577 Msa0042500:intron 45.0%
GCAAGAAAAATCTGCATCGG+GGG - chr1_1:73392604-73392623 None:intergenic 45.0%
CCCTCGATGTAATAGTCTTC+AGG - chr1_1:73392651-73392670 None:intergenic 45.0%
GACTATTACATCGAGGGACA+AGG + chr1_1:73392654-73392673 Msa0042500:CDS 45.0%
CAAGTTGCTTGATGAACCGA+TGG - chr1_1:73392901-73392920 None:intergenic 45.0%
CTCTTATCAGTGCTCGATCA+TGG - chr1_1:73393094-73393113 None:intergenic 45.0%
! TCATTTGGCAAGGGCATGTA+TGG - chr1_1:73393458-73393477 None:intergenic 45.0%
TCGTTGTTCCCATCATCTCA+AGG + chr1_1:73393625-73393644 Msa0042500:CDS 45.0%
! TTCACTGGTGTCTTTTGGTC+AGG - chr1_1:73393730-73393749 None:intergenic 45.0%
ATGGTAGTCAAGAGGATGGA+GGG - chr1_1:73393801-73393820 None:intergenic 45.0%
AATGGTAGTCAAGAGGATGG+AGG - chr1_1:73393802-73393821 None:intergenic 45.0%
TATCAGCAGCTGCAAACTTG+AGG - chr1_1:73393849-73393868 None:intergenic 45.0%
! AATGGGGTATCAATTGTCGG+TGG + chr1_1:73394033-73394052 Msa0042500:intron 45.0%
GCTCTATCCTCAGTTGAAAG+TGG - chr1_1:73394340-73394359 None:intergenic 45.0%
CCCACGGTATTCAAAAGGAA+AGG - chr1_1:73394390-73394409 None:intergenic 45.0%
! ATGGAAGGTGCAACCTTATC+CGG + chr1_1:73394607-73394626 Msa0042500:CDS 45.0%
TCAGCCTATATCTGTGATGC+GGG + chr1_1:73394640-73394659 Msa0042500:CDS 45.0%
GAGCTTCTTGCACAGTCTAA+AGG + chr1_1:73394688-73394707 Msa0042500:CDS 45.0%
GGAAGTGATCACTGTACAAG+CGG + chr1_1:73395031-73395050 Msa0042500:three_prime_UTR 45.0%
TTGGGAGGAGATGCTGAGAT+TGG - chr1_1:73388570-73388589 None:intergenic 50.0%
GGTATCTTGGCTACGTAGGT+TGG - chr1_1:73388589-73388608 None:intergenic 50.0%
!! GAAGGGTATCTTGGCTACGT+AGG - chr1_1:73388593-73388612 None:intergenic 50.0%
GTAGCAGAGAGTGAAGTTGC+CGG - chr1_1:73388746-73388765 None:intergenic 50.0%
ACTCGTGCTGGAGATTCTGT+TGG + chr1_1:73388764-73388783 Msa0042500:CDS 50.0%
CGCAAAGACACATAGCCACA+AGG + chr1_1:73388808-73388827 Msa0042500:CDS 50.0%
GGTCTCAGGTTCAAATCCTC+CGG + chr1_1:73389260-73389279 Msa0042500:intron 50.0%
GTCTCAGGTTCAAATCCTCC+GGG + chr1_1:73389261-73389280 Msa0042500:intron 50.0%
GGGGGTGGCAATTGAATGTA+TGG - chr1_1:73389308-73389327 None:intergenic 50.0%
ACTAATCTCACCGTCCACTG+GGG - chr1_1:73389328-73389347 None:intergenic 50.0%
GACTAATCTCACCGTCCACT+GGG - chr1_1:73389329-73389348 None:intergenic 50.0%
GAAACTTGGTATCCGGCCTA+AGG - chr1_1:73389368-73389387 None:intergenic 50.0%
!! GGATGAGAACTGGTTTGTGC+TGG + chr1_1:73389742-73389761 Msa0042500:intron 50.0%
CAGGTTCTACATGGGTCATG+TGG + chr1_1:73389773-73389792 Msa0042500:intron 50.0%
CCTCGATAATGTTCAGGCTC+CGG - chr1_1:73389912-73389931 None:intergenic 50.0%
GTCAACTGCAGTCGAACTCT+TGG + chr1_1:73389977-73389996 Msa0042500:CDS 50.0%
GCAGTCGAACTCTTGGATCA+AGG + chr1_1:73389984-73390003 Msa0042500:CDS 50.0%
! CTAGATTTTCGCTTCCCGGT+TGG + chr1_1:73390745-73390764 Msa0042500:CDS 50.0%
! AGATTTTCGCTTCCCGGTTG+GGG + chr1_1:73390747-73390766 Msa0042500:CDS 50.0%
GCAATGCAATGACATCCCCA+AGG - chr1_1:73390921-73390940 None:intergenic 50.0%
TGGACTCAGTGCAAGAGCTA+CGG - chr1_1:73390996-73391015 None:intergenic 50.0%
ATGTCCCTCAATGCACCATC+TGG - chr1_1:73391040-73391059 None:intergenic 50.0%
ATCCAGTTGCCTATGCCCTT+GGG + chr1_1:73391692-73391711 Msa0042500:CDS 50.0%
! TCCCTTTTGCGGATGCTGAA+AGG + chr1_1:73391790-73391809 Msa0042500:CDS 50.0%
TAGAGGGGGCAGGTATAGTT+CGG + chr1_1:73391861-73391880 Msa0042500:intron 50.0%
GAAGCCGATGCTTATGTTGC+TGG + chr1_1:73392157-73392176 Msa0042500:CDS 50.0%
!! GGTTAGTAGTTTGCTTGCCC+TGG + chr1_1:73392178-73392197 Msa0042500:intron 50.0%
GTTACTCCCATCAGAGTGGA+GGG + chr1_1:73392294-73392313 Msa0042500:CDS 50.0%
! CCTTTTCCCTCCACTCTGAT+GGG - chr1_1:73392303-73392322 None:intergenic 50.0%
! TCCTTTTCCCTCCACTCTGA+TGG - chr1_1:73392304-73392323 None:intergenic 50.0%
ACCCTTACATTCTGGATGGC+AGG + chr1_1:73392538-73392557 Msa0042500:intron 50.0%
GCCTGCCATCCAGAATGTAA+GGG - chr1_1:73392542-73392561 None:intergenic 50.0%
TGCCTGCCATCCAGAATGTA+AGG - chr1_1:73392543-73392562 None:intergenic 50.0%
GGCAACTGAAGAAAGCTACC+GGG + chr1_1:73392559-73392578 Msa0042500:intron 50.0%
ATCAGATGTGTTCTGACGCC+AGG + chr1_1:73393428-73393447 Msa0042500:intron 50.0%
! AAGGGCATGTATGGATCTCC+TGG - chr1_1:73393449-73393468 None:intergenic 50.0%
GATCTTTACCAGGTCCCTCA+CGG - chr1_1:73393699-73393718 None:intergenic 50.0%
CTCTGCCCACGGTATTCAAA+AGG - chr1_1:73394395-73394414 None:intergenic 50.0%
AAAGTTGGAAGCTCTGCCCA+CGG - chr1_1:73394406-73394425 None:intergenic 50.0%
TGAAGTTTGCCTGCCGGATA+AGG - chr1_1:73394623-73394642 None:intergenic 50.0%
ATAGGCTGAAGTTTGCCTGC+CGG - chr1_1:73394629-73394648 None:intergenic 50.0%
CAGCCTATATCTGTGATGCG+GGG + chr1_1:73394641-73394660 Msa0042500:CDS 50.0%
AGCCTATATCTGTGATGCGG+GGG + chr1_1:73394642-73394661 Msa0042500:CDS 50.0%
TTCCCCCGCATCACAGATAT+AGG - chr1_1:73394647-73394666 None:intergenic 50.0%
! GGGAAGAATTGGTGGCATTG+CGG + chr1_1:73394662-73394681 Msa0042500:CDS 50.0%
! AGAATTGGTGGCATTGCGGA+AGG + chr1_1:73394666-73394685 Msa0042500:CDS 50.0%
ATGTCACACGCCCAAAGAAC+AGG - chr1_1:73394832-73394851 None:intergenic 50.0%
GTACAGTGATCACTTCCTCC+AGG - chr1_1:73395028-73395047 None:intergenic 50.0%
! TCTTGGCTACGTAGGTTGGG+AGG - chr1_1:73388585-73388604 None:intergenic 55.0%
TCACTCTCTGCTACTCGTGC+TGG + chr1_1:73388752-73388771 Msa0042500:CDS 55.0%
AGCAACGAAGCCGAACCTTG+TGG - chr1_1:73388826-73388845 None:intergenic 55.0%
GGTTCGGCTTCGTTGCTCTT+TGG + chr1_1:73388829-73388848 Msa0042500:CDS 55.0%
AACATCTGGCCAACCCCAGT+GGG - chr1_1:73389219-73389238 None:intergenic 55.0%
AGACTTGGGACTTGGGTCTC+AGG + chr1_1:73389246-73389265 Msa0042500:intron 55.0%
ATTCAATTGCCACCCCCCAG+TGG + chr1_1:73389311-73389330 Msa0042500:intron 55.0%
TAATCTCACCGTCCACTGGG+GGG - chr1_1:73389326-73389345 None:intergenic 55.0%
CTAATCTCACCGTCCACTGG+GGG - chr1_1:73389327-73389346 None:intergenic 55.0%
GGACTAATCTCACCGTCCAC+TGG - chr1_1:73389330-73389349 None:intergenic 55.0%
CGATAATGTTCAGGCTCCGG+AGG - chr1_1:73389909-73389928 None:intergenic 55.0%
CCGGAGCCTGAACATTATCG+AGG + chr1_1:73389909-73389928 Msa0042500:CDS 55.0%
ATCATTGGAGCTGGGCTTGC+TGG + chr1_1:73389951-73389970 Msa0042500:CDS 55.0%
GATCCAGTTGCCTATGCCCT+TGG + chr1_1:73391691-73391710 Msa0042500:CDS 55.0%
! AACCCAAGGGCATAGGCAAC+TGG - chr1_1:73391697-73391716 None:intergenic 55.0%
AAGGGAAGCCTCGGTCTTAG+TGG - chr1_1:73391776-73391795 None:intergenic 55.0%
! AGACCGAGGCTTCCCTTTTG+CGG + chr1_1:73391779-73391798 Msa0042500:CDS 55.0%
CATCCGCAAAAGGGAAGCCT+CGG - chr1_1:73391785-73391804 None:intergenic 55.0%
ACATCACAGATAGAGGGGGC+AGG + chr1_1:73391851-73391870 Msa0042500:CDS 55.0%
CTCTGCATCCCCACCTTAGA+TGG - chr1_1:73391963-73391982 None:intergenic 55.0%
ATATCAGCCTGCGATGTCCC+TGG + chr1_1:73392262-73392281 Msa0042500:intron 55.0%
GGTTACTCCCATCAGAGTGG+AGG + chr1_1:73392293-73392312 Msa0042500:CDS 55.0%
CCCATCAGAGTGGAGGGAAA+AGG + chr1_1:73392300-73392319 Msa0042500:CDS 55.0%
CTGAGTTGCACTGTGACCAC+AGG - chr1_1:73392361-73392380 None:intergenic 55.0%
! CTGCATCGGGGGTATAGAGA+AGG - chr1_1:73392593-73392612 None:intergenic 55.0%
GGCCAATCTCTGTACCGTGA+GGG + chr1_1:73393682-73393701 Msa0042500:CDS 55.0%
GTCCCTCACGGTACAGAGAT+TGG - chr1_1:73393687-73393706 None:intergenic 55.0%
GCAGCTGCAAACTTGAGGTC+TGG - chr1_1:73393844-73393863 None:intergenic 55.0%
AAGGTGCAACCTTATCCGGC+AGG + chr1_1:73394611-73394630 Msa0042500:CDS 55.0%
CTGTGATGCGGGGGAAGAAT+TGG + chr1_1:73394651-73394670 Msa0042500:CDS 55.0%
TGATGCGGGGGAAGAATTGG+TGG + chr1_1:73394654-73394673 Msa0042500:CDS 55.0%
CAACATCTGGCCAACCCCAG+TGG - chr1_1:73389220-73389239 None:intergenic 60.0%
AATTGCCACCCCCCAGTGGA+CGG + chr1_1:73389315-73389334 Msa0042500:intron 60.0%
TTCTTCGCCTTGCTGGGGCT+AGG + chr1_1:73390500-73390519 Msa0042500:intron 60.0%
! CGTGTAATGGAGCCCCAACC+GGG - chr1_1:73390762-73390781 None:intergenic 60.0%
! CCGTGTAATGGAGCCCCAAC+CGG - chr1_1:73390763-73390782 None:intergenic 60.0%
CCGGTTGGGGCTCCATTACA+CGG + chr1_1:73390760-73390779 Msa0042500:CDS 60.0%
CGGTTGGGGCTCCATTACAC+GGG + chr1_1:73390761-73390780 Msa0042500:CDS 60.0%
ACTCGTGCGTGTGCCACCTT+TGG - chr1_1:73391656-73391675 None:intergenic 60.0%
CGGCCAATCTCTGTACCGTG+AGG + chr1_1:73393681-73393700 Msa0042500:CDS 60.0%
TCTCTGTACCGTGAGGGACC+TGG + chr1_1:73393688-73393707 Msa0042500:CDS 60.0%
TTCGCCTTGCTGGGGCTAGG+TGG + chr1_1:73390503-73390522 Msa0042500:intron 65.0%
TCGCCTTGCTGGGGCTAGGT+GGG + chr1_1:73390504-73390523 Msa0042500:intron 65.0%
TTGCTGGGGCTAGGTGGGTG+CGG + chr1_1:73390509-73390528 Msa0042500:intron 65.0%
TCTCACCGTCCACTGGGGGG+TGG - chr1_1:73389323-73389342 None:intergenic 70.0%
GCACCCACCTAGCCCCAGCA+AGG - chr1_1:73390510-73390529 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73388351 73395081 73388351 ID=Msa0042500;Name=Msa0042500
chr1_1 mRNA 73388351 73395081 73388351 ID=Msa0042500-mRNA-1;Parent=Msa0042500;Name=Msa0042500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=368|1|1|1|1|1|14|325|579
chr1_1 exon 73388351 73388881 73388351 ID=Msa0042500-mRNA-1:exon:24570;Parent=Msa0042500-mRNA-1
chr1_1 exon 73389889 73390013 73389889 ID=Msa0042500-mRNA-1:exon:24571;Parent=Msa0042500-mRNA-1
chr1_1 exon 73390229 73390363 73390229 ID=Msa0042500-mRNA-1:exon:24572;Parent=Msa0042500-mRNA-1
chr1_1 exon 73390522 73390594 73390522 ID=Msa0042500-mRNA-1:exon:24573;Parent=Msa0042500-mRNA-1
chr1_1 exon 73390743 73390816 73390743 ID=Msa0042500-mRNA-1:exon:24574;Parent=Msa0042500-mRNA-1
chr1_1 exon 73390971 73391075 73390971 ID=Msa0042500-mRNA-1:exon:24575;Parent=Msa0042500-mRNA-1
chr1_1 exon 73391628 73391872 73391628 ID=Msa0042500-mRNA-1:exon:24576;Parent=Msa0042500-mRNA-1
chr1_1 exon 73391957 73392044 73391957 ID=Msa0042500-mRNA-1:exon:24577;Parent=Msa0042500-mRNA-1
chr1_1 exon 73392136 73392178 73392136 ID=Msa0042500-mRNA-1:exon:24578;Parent=Msa0042500-mRNA-1
chr1_1 exon 73392269 73392425 73392269 ID=Msa0042500-mRNA-1:exon:24579;Parent=Msa0042500-mRNA-1
chr1_1 exon 73392560 73392688 73392560 ID=Msa0042500-mRNA-1:exon:24580;Parent=Msa0042500-mRNA-1
chr1_1 exon 73393433 73393505 73393433 ID=Msa0042500-mRNA-1:exon:24581;Parent=Msa0042500-mRNA-1
chr1_1 exon 73393619 73393783 73393619 ID=Msa0042500-mRNA-1:exon:24582;Parent=Msa0042500-mRNA-1
chr1_1 exon 73394592 73395081 73394592 ID=Msa0042500-mRNA-1:exon:24583;Parent=Msa0042500-mRNA-1
chr1_1 five_prime_UTR 73388351 73388718 73388351 ID=Msa0042500-mRNA-1:five_prime_utr;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73388719 73388881 73388719 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73389889 73390013 73389889 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73390229 73390363 73390229 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73390522 73390594 73390522 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73390743 73390816 73390743 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73390971 73391075 73390971 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73391628 73391872 73391628 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73391957 73392044 73391957 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73392136 73392178 73392136 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73392269 73392425 73392269 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73392560 73392688 73392560 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73393433 73393505 73393433 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73393619 73393783 73393619 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 CDS 73394592 73394756 73394592 ID=Msa0042500-mRNA-1:cds;Parent=Msa0042500-mRNA-1
chr1_1 three_prime_UTR 73394757 73395081 73394757 ID=Msa0042500-mRNA-1:three_prime_utr;Parent=Msa0042500-mRNA-1
Gene Sequence

>Msa0042500

ATGACGACTTCTTTAATTCATTGTCCGGCAACTTCACTCTCTGCTACTCGTGCTGGAGATTCTGTTGGTTTCTTTGTTCCCACACGTTTCGCAAAGACACATAGCCACAAGGTTCGGCTTCGTTGCTCTTTGGATTCTAATGTTTCCGACATGAGTACCAACGCACCAAAAGGACTATTTCCTCCGGAGCCTGAACATTATCGAGGACCGAAGCTTAAAGTTGCTATCATTGGAGCTGGGCTTGCTGGCATGTCAACTGCAGTCGAACTCTTGGATCAAGGACATGAGGTGGATATATACGAGTCAAGATCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGATAAACGCGGAAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGACTATTGAAAAAGGTGGGTGCGGATAACAATCTACTTGTGAAGGATCACACTCACACCTTTGTAAACAAAGGGGGTCAAATTGGAGAACTAGATTTTCGCTTCCCGGTTGGGGCTCCATTACACGGGATAAATGCATTTTTAACCACAAATCAGCTTAAGACTTATGATAAGGCTAGAAATGCCGTAGCTCTTGCACTGAGTCCAGTTGTCAGAGCTCTTGTTGATCCAGATGGTGCATTGAGGGACATACGGAATTTGGATAGTGTTAGCTTTTCAGACTGGTTTATGTCCAAAGGTGGCACACGCACGAGTATTCAAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTGATAATATCAGTGCCCGTTGCATGCTCACCATATTTGCATTGTTTGCCACTAAGACCGAGGCTTCCCTTTTGCGGATGCTGAAAGGTTCACCAGATGTTTATTTGAGTGGCCCTATCCGGAAGTACATCACAGATAGAGGGGGCAGGTTCCATCTAAGGTGGGGATGCAGAGAAGTACTTTATGATAAATCTGCTGATGGGAGCACTTATGTTACAGGACTTTCCTTGTCAAAGGCTACCGAGAAGAAAATTGTGGAAGCCGATGCTTATGTTGCTGCCTGCGATGTCCCTGGAATTAAAAGGTTACTCCCATCAGAGTGGAGGGAAAAGGAGTTTTTCAATAACATATACGAACTCGTTGGAGTTCCTGTGGTCACAGTGCAACTCAGATACAATGGTTGGGTAACTGAATTGCAGAATCTAGAAATGTCAAGGCAACTGAAGAAAGCTACCGGGTTAGACAACCTTCTCTATACCCCCGATGCAGATTTTTCTTGCTTTGCAGATCTTGCACTTGCATCTCCTGAAGACTATTACATCGAGGGACAAGGATCATTACTCCAATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTGCCAAATGAAGAAATTATTTCAAGAGTAGCGAAACAGGTTATATCGTTGTTCCCATCATCTCAAGGTTTAGAAGTGACTTGGTCATCTGTTGTTAAAATCGGCCAATCTCTGTACCGTGAGGGACCTGGTAAAGATCCATTTAGACCTGACCAAAAGACACCAGTGAAAAATTTCTTTCTTTCTGGCTCTTACACAAAACAGGATTACATAGACAGCATGGAAGGTGCAACCTTATCCGGCAGGCAAACTTCAGCCTATATCTGTGATGCGGGGGAAGAATTGGTGGCATTGCGGAAGGAGCTTCTTGCACAGTCTAAAGGCGACATTAAATTTACAAATACTAAAGATGAGTTGAGTCTAGTATAA
Protein sequence

>Msa0042500

MTTSLIHCPATSLSATRAGDSVGFFVPTRFAKTHSHKVRLRCSLDSNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADNNLLVKDHTHTFVNKGGQIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGALRDIRNLDSVSFSDWFMSKGGTRTSIQKMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDRGGRFHLRWGCREVLYDKSADGSTYVTGLSLSKATEKKIVEADAYVAACDVPGIKRLLPSEWREKEFFNNIYELVGVPVVTVQLRYNGWVTELQNLEMSRQLKKATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVAKQVISLFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQTSAYICDAGEELVALRKELLAQSKGDIKFTNTKDELSLV*