AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079570 MtrunA17_Chr1g0190941 97.582 579 14 0 1 579 1 579 0.0 1173
Msa0079570 MtrunA17_Chr3g0122151 31.380 529 324 10 41 562 82 578 6.71e-76 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079570 AT3G04870.3 83.119 545 86 1 35 579 20 558 0.0 965
Msa0079570 AT3G04870.1 83.119 545 86 1 35 579 20 558 0.0 965
Msa0079570 AT3G04870.4 83.119 545 86 1 35 579 20 558 0.0 965
Msa0079570 AT3G04870.2 83.119 545 86 1 35 579 20 558 0.0 965
Msa0079570 AT4G14210.1 32.179 491 294 9 72 554 93 552 1.50e-72 243
Msa0079570 AT4G14210.3 32.179 491 294 9 72 554 93 552 1.50e-72 243
Msa0079570 AT4G14210.2 32.179 491 294 9 72 554 93 552 1.50e-72 243

Find 185 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAGTAATCCTGTTCTT+TGG 0.221868 1_2:-57476861 Msa0079570:three_prime_UTR
ATCATTGGAGCTGGGCTTGC+TGG 0.256670 1_2:-57481728 Msa0079570:CDS
GGTTCGGCTTCGTTGCTCTT+TGG 0.276120 1_2:-57482855 Msa0079570:CDS
ATTGAGGGACATACGGAATT+TGG 0.279555 1_2:-57480631 Msa0079570:CDS
TTGTTTATACTTGTGAAATA+TGG 0.292318 1_2:-57476766 Msa0079570:three_prime_UTR
CTCTGCATCCCCACCTTAGA+TGG 0.296738 1_2:+57479719 None:intergenic
AGTGGCAAACAATGCAAATA+TGG 0.307203 1_2:+57479924 None:intergenic
CTTGAAATAATTTCTTCATT+TGG 0.308702 1_2:+57478209 None:intergenic
CTCTATCTGTGATGTACTTC+CGG 0.333710 1_2:+57479836 None:intergenic
ATGAAGTAATCCTGTTCTTT+GGG 0.338750 1_2:-57476860 Msa0079570:three_prime_UTR
AAGCTTAAAGTTGCTATCAT+TGG 0.354737 1_2:-57481743 Msa0079570:CDS
TTTAACCACAAATCAGCTTA+AGG 0.358549 1_2:-57480884 Msa0079570:intron
CGGAAGTACATCACAGATAG+AGG 0.360487 1_2:-57479835 Msa0079570:CDS
GAAAATAGAATTAAGCACTA+TGG 0.361291 1_2:+57483023 None:intergenic
GACTTCTTTAATTCATTGTC+CGG 0.363391 1_2:-57482960 Msa0079570:CDS
GATCCAGTTGCCTATGCCCT+TGG 0.363674 1_2:-57479988 Msa0079570:CDS
TCATTTGGCAAGGGCATGTA+TGG 0.366332 1_2:+57478224 None:intergenic
CCCTCGATGTAATAGTCTTC+AGG 0.368691 1_2:+57479031 None:intergenic
ACGCGGAAATCACATTGAAA+TGG 0.376818 1_2:-57481391 Msa0079570:CDS
GCTGAAACAGGTTCCATCTA+AGG 0.377434 1_2:-57479732 Msa0079570:intron
GATGGGAGCACTTATGTTAC+AGG 0.378354 1_2:-57479673 Msa0079570:CDS
TGGTCATCTGTTGTTAAAAT+CGG 0.386009 1_2:-57478018 Msa0079570:CDS
AGAGGAACGATAAATTTATA+TGG 0.392972 1_2:+57476606 None:intergenic
AACCCAAGGGCATAGGCAAC+TGG 0.393599 1_2:+57479985 None:intergenic
ATCCAGTTGCCTATGCCCTT+GGG 0.393795 1_2:-57479987 Msa0079570:CDS
ACTCGTGCGTGTGCCACCTT+TGG 0.393846 1_2:+57480026 None:intergenic
TGAGTTGAGTCTAGTATAAG+AGG 0.398814 1_2:-57476941 Msa0079570:exon
TTATATGAAATTTGCGGAAA+AGG 0.400377 1_2:-57476895 Msa0079570:three_prime_UTR
GCGATGTCCCTGGAATTAAA+AGG 0.400605 1_2:-57479407 Msa0079570:CDS
TTCGGTCCTCGATAATGTTC+AGG 0.401785 1_2:+57481764 None:intergenic
TTCTGGCTCTTACACAAAAC+AGG 0.401890 1_2:-57477917 Msa0079570:intron
TCCGGAGGAAATAGTCCTTT+TGG 0.404642 1_2:+57481788 None:intergenic
ATGTTGTTATGTGTAGGAAT+AGG 0.407695 1_2:+57483060 None:intergenic
ATGTCCCTCAATGCACCATC+TGG 0.410123 1_2:+57480642 None:intergenic
GTCAACTGCAGTCGAACTCT+TGG 0.410618 1_2:-57481702 Msa0079570:CDS
AGTTTGTGTGTGAGTGGTAG+TGG 0.413656 1_2:+57483196 None:intergenic
ATGGAAGGTGCAACCTTATC+CGG 0.415005 1_2:-57477072 Msa0079570:CDS
CCGTGTAATGGAGCCCCAAC+CGG 0.415657 1_2:+57480919 None:intergenic
AATTACCTTAAGCTGATTTG+TGG 0.418452 1_2:+57480879 None:intergenic
TATTTCAAGAGTAGCGAAAC+AGG 0.418943 1_2:-57478195 Msa0079570:intron
TGAAGTTTGCCTGCCGGATA+AGG 0.421829 1_2:+57477059 None:intergenic
TCTAGTATAAGAGGAATTTA+CGG 0.422397 1_2:-57476932 Msa0079570:exon
TCAACAAGAGCTCTGACAAC+TGG 0.426518 1_2:+57480666 None:intergenic
CGCGGAAATCACATTGAAAT+GGG 0.426629 1_2:-57481390 Msa0079570:CDS
AACCTTTCAGCATCCGCAAA+AGG 0.426804 1_2:+57479887 None:intergenic
TAGAAATGAGAAGGGTATCT+TGG 0.433777 1_2:+57483091 None:intergenic
ATAAGAGGAATTTACGGATA+AGG 0.436575 1_2:-57476926 Msa0079570:exon
TATGTATCAGACTTATGATA+AGG 0.440470 1_2:-57480718 Msa0079570:intron
GTATCTTGGCTACGTAGGTT+GGG 0.441610 1_2:+57483105 None:intergenic
AAGGGAAGCCTCGGTCTTAG+TGG 0.441905 1_2:+57479906 None:intergenic
CTGAGATTGGTGAATTTGTC+TGG 0.442653 1_2:+57483136 None:intergenic
TATAAATTGTGATTCGTATC+CGG 0.445411 1_2:-57476739 Msa0079570:three_prime_UTR
ATGTCACACGCCCAAAGAAC+AGG 0.446083 1_2:+57476850 None:intergenic
ACTTCTAAACCTTGAGATGA+TGG 0.448031 1_2:+57478045 None:intergenic
CTCACACCTTTGTAAACAAA+GGG 0.458935 1_2:-57481120 Msa0079570:CDS
AAAGTTGCTATCATTGGAGC+TGG 0.460146 1_2:-57481737 Msa0079570:CDS
CCGGTTGGGGCTCCATTACA+CGG 0.461061 1_2:-57480919 Msa0079570:CDS
ATGATAGCAACTTTAAGCTT+CGG 0.461516 1_2:+57481746 None:intergenic
CTCAAGGTTTAGAAGTGACT+TGG 0.468098 1_2:-57478038 Msa0079570:CDS
TTGCTGGGGCTAGGTGGGTG+CGG 0.471726 1_2:-57481170 Msa0079570:intron
AATAATTTCTTCATTTGGCA+AGG 0.476215 1_2:+57478214 None:intergenic
ATATCAGCCTGCGATGTCCC+TGG 0.478030 1_2:-57479417 Msa0079570:intron
TCAGCCTATATCTGTGATGC+GGG 0.478524 1_2:-57477039 Msa0079570:CDS
CTGGCATTAACGATACATAA+TGG 0.478659 1_2:+57483322 None:intergenic
AATGCATTTATCCCGTGTAA+TGG 0.479235 1_2:+57480907 None:intergenic
TTTATTTGAGTGGCCCTATC+CGG 0.481283 1_2:-57479855 Msa0079570:CDS
GGGCCACTCAAATAAACATC+TGG 0.481392 1_2:+57479862 None:intergenic
GTAGATGCCACTATTGTCTC+TGG 0.481803 1_2:+57483303 None:intergenic
AGACACATAGCCACAAGGTT+CGG 0.488033 1_2:-57482871 Msa0079570:CDS
CCCATCAGAGTGGAGGGAAA+AGG 0.490856 1_2:-57479379 Msa0079570:CDS
GAAGCCGATGCTTATGTTGC+TGG 0.492399 1_2:-57479522 Msa0079570:intron
GTCCCTCACGGTACAGAGAT+TGG 0.495906 1_2:+57477995 None:intergenic
TTATGTGTAGGAATAGGAAT+AGG 0.500397 1_2:+57483066 None:intergenic
CTGTGATGTACTTCCGGATA+GGG 0.500954 1_2:+57479842 None:intergenic
ATCAGATGTGTTCTGACGCC+AGG 0.501293 1_2:-57478251 Msa0079570:intron
ACTCGTGCTGGAGATTCTGT+TGG 0.501847 1_2:-57482920 Msa0079570:CDS
GGTATCTTGGCTACGTAGGT+TGG 0.505135 1_2:+57483104 None:intergenic
AAATATGGTGAGCATGCAAC+GGG 0.505912 1_2:+57479939 None:intergenic
TCACTCTCTGCTACTCGTGC+TGG 0.509176 1_2:-57482932 Msa0079570:CDS
GTAGCAGAGAGTGAAGTTGC+CGG 0.509893 1_2:+57482941 None:intergenic
GAGCTTCTTGCACAGTCTAA+AGG 0.512258 1_2:-57476991 Msa0079570:CDS
AATAGGAATAGAAATGAGAA+GGG 0.514637 1_2:+57483083 None:intergenic
TCACCAGATGTTTATTTGAG+TGG 0.514814 1_2:-57479865 Msa0079570:CDS
TTGGGAGGAGATGCTGAGAT+TGG 0.517534 1_2:+57483123 None:intergenic
GTCAAGTTATATGAAATTTG+CGG 0.517734 1_2:-57476901 Msa0079570:three_prime_UTR
GAATAGGAATAGAAATGAGA+AGG 0.518157 1_2:+57483082 None:intergenic
AAGGGCATGTATGGATCTCC+TGG 0.521092 1_2:+57478233 None:intergenic
TACAGGACTTTCCTTGTCAA+AGG 0.522929 1_2:-57479656 Msa0079570:intron
CGTGTAATGGAGCCCCAACC+GGG 0.524152 1_2:+57480920 None:intergenic
CCTCGATAATGTTCAGGCTC+CGG 0.524827 1_2:+57481770 None:intergenic
GTACAGTGATCACTTCCTCC+AGG 0.527624 1_2:+57476654 None:intergenic
GATGTGAAAACCGACTTAGT+TGG 0.528115 1_2:+57482990 None:intergenic
TGATCCAGATGGTGCATTGA+GGG 0.528957 1_2:-57480646 Msa0079570:CDS
TCAGACTGGTTTATGTCCAA+AGG 0.529696 1_2:-57480042 Msa0079570:CDS
AGATAATAATGAGATAATCC+TGG 0.532859 1_2:-57476672 Msa0079570:three_prime_UTR
ACTTTCATGCCAGCACCAAA+AGG 0.533509 1_2:-57481803 Msa0079570:intron
TTACTTATGTTGTTATGTGT+AGG 0.537964 1_2:+57483054 None:intergenic
ATAATTTCTTCATTTGGCAA+GGG 0.539005 1_2:+57478215 None:intergenic
GCAGTCGAACTCTTGGATCA+AGG 0.540059 1_2:-57481695 Msa0079570:CDS
TGCAACTCAGATACAATGGT+TGG 0.542316 1_2:-57479308 Msa0079570:CDS
CATCCGCAAAAGGGAAGCCT+CGG 0.544863 1_2:+57479897 None:intergenic
CTTTATGATAAATCTGCTGA+TGG 0.545887 1_2:-57479691 Msa0079570:CDS
ACTTTAGTTTGTTAGTTGAG+AGG 0.548901 1_2:+57483160 None:intergenic
GTCAATAAACCCAAGGGCAT+AGG 0.550109 1_2:+57479978 None:intergenic
ACCTTTCAGCATCCGCAAAA+GGG 0.553238 1_2:+57479888 None:intergenic
AGGCAACTGAAGAAAGCTAC+CGG 0.553730 1_2:-57479121 Msa0079570:CDS
TCTGTGATGTACTTCCGGAT+AGG 0.554625 1_2:+57479841 None:intergenic
ATGGTGCATTGAGGGACATA+CGG 0.554758 1_2:-57480638 Msa0079570:CDS
GCAACTCAGATACAATGGTT+GGG 0.557255 1_2:-57479307 Msa0079570:CDS
ATTGTTAGTATTGCAGCAAG+TGG 0.561102 1_2:-57476791 Msa0079570:three_prime_UTR
CTGAGTTGCACTGTGACCAC+AGG 0.565771 1_2:+57479321 None:intergenic
ACCAAAAGGACTATTTCCTC+CGG 0.566476 1_2:-57481789 Msa0079570:CDS
AAGTTGCTATCATTGGAGCT+GGG 0.567873 1_2:-57481736 Msa0079570:CDS
ATAGACAATAATAACAGATG+TGG 0.568182 1_2:-57483225 Msa0079570:five_prime_UTR
TTTAATTCCAGGGACATCGC+AGG 0.571144 1_2:+57479410 None:intergenic
ATAGGCTGAAGTTTGCCTGC+CGG 0.573360 1_2:+57477053 None:intergenic
TCGTTGTTCCCATCATCTCA+AGG 0.573643 1_2:-57478054 Msa0079570:CDS
ATCTCATTATTATCTTAATG+CGG 0.574586 1_2:+57476680 None:intergenic
ACTCACACCTTTGTAAACAA+AGG 0.576174 1_2:-57481121 Msa0079570:CDS
CAAATATGGTGAGCATGCAA+CGG 0.576514 1_2:+57479938 None:intergenic
GCATTAAGAATGACAAAGAC+CGG 0.577256 1_2:+57476720 None:intergenic
GTTAATGCCAGAGACAATAG+TGG 0.578029 1_2:-57483310 Msa0079570:five_prime_UTR
TGAATTAAAGAAGTCATCAT+CGG 0.582427 1_2:+57482968 None:intergenic
GAAACAGGTTCCATCTAAGG+TGG 0.582717 1_2:-57479729 Msa0079570:intron
GGCTACCGAGAAGAAAATTG+TGG 0.583615 1_2:-57479544 Msa0079570:CDS
AGAATTGGTGGCATTGCGGA+AGG 0.584021 1_2:-57477013 Msa0079570:CDS
CTTCTAAACCTTGAGATGAT+GGG 0.585413 1_2:+57478046 None:intergenic
TTCAGCCTATATCTGTGATG+CGG 0.586370 1_2:-57477040 Msa0079570:CDS
TGCAGAATCTAGAAATGTCA+AGG 0.588922 1_2:-57479275 Msa0079570:intron
AATAACATATACGAACTCGT+TGG 0.589049 1_2:-57479348 Msa0079570:CDS
AGAGCTCTTGTTGATCCAGA+TGG 0.589565 1_2:-57480657 Msa0079570:CDS
TGGACTCAGTGCAAGAGCTA+CGG 0.590603 1_2:+57480686 None:intergenic
ATAGAGAAGGTTGTCTAACC+CGG 0.591839 1_2:+57479102 None:intergenic
CGGTTGGGGCTCCATTACAC+GGG 0.591933 1_2:-57480918 Msa0079570:CDS
AAACAGGTTCCATCTAAGGT+GGG 0.592718 1_2:-57479728 Msa0079570:intron
GGTCTAAATGGATCTTTACC+AGG 0.593355 1_2:+57477973 None:intergenic
CGATAATGTTCAGGCTCCGG+AGG 0.594301 1_2:+57481773 None:intergenic
GGATAACAATCTACTTGTGA+AGG 0.594376 1_2:-57481149 Msa0079570:CDS
GGAAGTACATCACAGATAGA+GGG 0.594388 1_2:-57479834 Msa0079570:CDS
TAGACAATAATAACAGATGT+GGG 0.596893 1_2:-57483224 Msa0079570:five_prime_UTR
TTGATCCAGATGGTGCATTG+AGG 0.597130 1_2:-57480647 Msa0079570:CDS
AAGGTGCAACCTTATCCGGC+AGG 0.600316 1_2:-57477068 Msa0079570:CDS
ATTGTTTGCCACTAAGACCG+AGG 0.602157 1_2:-57479914 Msa0079570:CDS
CGCAAAGACACATAGCCACA+AGG 0.605752 1_2:-57482876 Msa0079570:CDS
TATCACAGTCAATAAACCCA+AGG 0.605846 1_2:+57479971 None:intergenic
GATTACATAGACAGCATGGA+AGG 0.607021 1_2:-57477087 Msa0079570:CDS
GTTACTCCCATCAGAGTGGA+GGG 0.607848 1_2:-57479385 Msa0079570:CDS
TCTCTGTACCGTGAGGGACC+TGG 0.607923 1_2:-57477991 Msa0079570:CDS
GGGAAGAATTGGTGGCATTG+CGG 0.610606 1_2:-57477017 Msa0079570:CDS
TTTATGATAAATCTGCTGAT+GGG 0.613858 1_2:-57479690 Msa0079570:CDS
CAGCCTATATCTGTGATGCG+GGG 0.614951 1_2:-57477038 Msa0079570:CDS
GACTATTACATCGAGGGACA+AGG 0.615874 1_2:-57479025 Msa0079570:CDS
CCTGAAGACTATTACATCGA+GGG 0.618138 1_2:-57479031 Msa0079570:CDS
AACAGGTTCCATCTAAGGTG+GGG 0.618751 1_2:-57479727 Msa0079570:intron
ATGTGTCTTTGCGAAACGTG+TGG 0.618912 1_2:+57482886 None:intergenic
ATCACAGTCAATAAACCCAA+GGG 0.619021 1_2:+57479972 None:intergenic
AGCCTATATCTGTGATGCGG+GGG 0.619252 1_2:-57477037 Msa0079570:CDS
GACTGGTTTATGTCCAAAGG+TGG 0.624860 1_2:-57480039 Msa0079570:CDS
CTAACCGTTGGTACTCATGT+CGG 0.626829 1_2:+57482820 None:intergenic
GGTTACTCCCATCAGAGTGG+AGG 0.630867 1_2:-57479386 Msa0079570:CDS
TCAGGATTACATAGACAGCA+TGG 0.632080 1_2:-57477091 Msa0079570:intron
GTTTCCGACATGAGTACCAA+CGG 0.632950 1_2:-57482824 Msa0079570:intron
CTAACCAGCAACATAAGCAT+CGG 0.636070 1_2:+57479518 None:intergenic
GGCCAATCTCTGTACCGTGA+GGG 0.636229 1_2:-57477997 Msa0079570:CDS
GATCTTTACCAGGTCCCTCA+CGG 0.638059 1_2:+57477983 None:intergenic
TGTGTCTTTGCGAAACGTGT+GGG 0.639468 1_2:+57482887 None:intergenic
CTTGTGAGTTTGTGTGTGAG+TGG 0.640783 1_2:+57483190 None:intergenic
GGCAACTGAAGAAAGCTACC+GGG 0.645085 1_2:-57479120 Msa0079570:CDS
CGAACTCGTTGGAGTTCCTG+TGG 0.646603 1_2:-57479337 Msa0079570:CDS
GGAAGTGATCACTGTACAAG+CGG 0.648807 1_2:-57476648 Msa0079570:three_prime_UTR
ACTCTTGGATCAAGGACATG+AGG 0.652064 1_2:-57481687 Msa0079570:intron
TCTTGGCTACGTAGGTTGGG+AGG 0.658118 1_2:+57483108 None:intergenic
ACAGTGCAACTCAGATACAA+TGG 0.663291 1_2:-57479312 Msa0079570:CDS
GAAGTACATCACAGATAGAG+GGG 0.664359 1_2:-57479833 Msa0079570:CDS
AGCAACGAAGCCGAACCTTG+TGG 0.668845 1_2:+57482861 None:intergenic
CGGCCAATCTCTGTACCGTG+AGG 0.680928 1_2:-57477998 Msa0079570:CDS
AAAGGTTACTCCCATCAGAG+TGG 0.682957 1_2:-57479389 Msa0079570:CDS
TCCTGAAGACTATTACATCG+AGG 0.684522 1_2:-57479032 Msa0079570:CDS
GAAGGGTATCTTGGCTACGT+AGG 0.685766 1_2:+57483100 None:intergenic
AAAGTATATCACCTTTGACA+AGG 0.686346 1_2:+57479645 None:intergenic
CACACCTTTGTAAACAAAGG+GGG 0.694534 1_2:-57481118 Msa0079570:CDS
CCGGAGCCTGAACATTATCG+AGG 0.697521 1_2:-57481770 Msa0079570:CDS
AAGTACATCACAGATAGAGG+GGG 0.702330 1_2:-57479832 Msa0079570:CDS
TCACACCTTTGTAAACAAAG+GGG 0.705760 1_2:-57481119 Msa0079570:CDS
TAATAATGAGATAATCCTGG+AGG 0.715134 1_2:-57476669 Msa0079570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTAATTGTATTTATTTT+TGG + chr1_2:57477671-57477690 None:intergenic 10.0%
!! ATATCATAATATATTGAAAT+TGG - chr1_2:57478340-57478359 Msa0079570:intron 10.0%
!! AAATATCATTAAAAGAATAA+CGG + chr1_2:57481813-57481832 None:intergenic 10.0%
!! TTCCATTAACTAAAAAATAT+AGG - chr1_2:57476683-57476702 Msa0079570:three_prime_UTR 15.0%
!! CTAAACAAAAAAAAAAAAGT+TGG + chr1_2:57477181-57477200 None:intergenic 15.0%
!!! TACATAAAACCTTATTTATT+TGG - chr1_2:57477825-57477844 Msa0079570:intron 15.0%
!! AATAATCAGGAAAATTTATT+TGG + chr1_2:57479388-57479407 None:intergenic 15.0%
!!! TTTTCCTATAAGTATTTTTT+TGG + chr1_2:57481237-57481256 None:intergenic 15.0%
!! AAAAAAATACTTATAGGAAA+AGG - chr1_2:57481236-57481255 Msa0079570:intron 15.0%
!! AATATTATATGAACATATGT+TGG + chr1_2:57481647-57481666 None:intergenic 15.0%
!! AATAAAATAACAAACTTAGA+GGG + chr1_2:57481683-57481702 None:intergenic 15.0%
!! AAATAAAATAACAAACTTAG+AGG + chr1_2:57481684-57481703 None:intergenic 15.0%
!! GACATATCATAAATATTATA+TGG - chr1_2:57482427-57482446 Msa0079570:intron 15.0%
!! TATCATAAATATTATATGGA+TGG - chr1_2:57482431-57482450 Msa0079570:intron 15.0%
!!! GTCCTATATTTTTTAGTTAA+TGG + chr1_2:57476688-57476707 None:intergenic 20.0%
!! CAAAAAAAAAAAAGTTGGAA+GGG + chr1_2:57477176-57477195 None:intergenic 20.0%
!! ACAAAAAAAAAAAAGTTGGA+AGG + chr1_2:57477177-57477196 None:intergenic 20.0%
!!! TGTATTTATTTTTGGAAACT+TGG + chr1_2:57477663-57477682 None:intergenic 20.0%
!! ACAATTACAATATGAATGTT+AGG - chr1_2:57477680-57477699 Msa0079570:intron 20.0%
!! CAATTACAATATGAATGTTA+GGG - chr1_2:57477681-57477700 Msa0079570:intron 20.0%
!! TAAGCTTATCCAAATAAATA+AGG + chr1_2:57477837-57477856 None:intergenic 20.0%
!! TTTGGATAAGCTTAAAAATA+AGG - chr1_2:57477843-57477862 Msa0079570:intron 20.0%
!!! TTTGTCTATTTTTGTATTGA+TGG - chr1_2:57478310-57478329 Msa0079570:intron 20.0%
!! ATTGAAATTGGATGTTATTA+TGG - chr1_2:57478352-57478371 Msa0079570:intron 20.0%
!!! ATGGATTGATATGATAAAAA+TGG + chr1_2:57478747-57478766 None:intergenic 20.0%
!! TTATCATATCAATCCATAAT+CGG - chr1_2:57478750-57478769 Msa0079570:intron 20.0%
!! AAGAAAAATTAATCCGATTA+TGG + chr1_2:57478766-57478785 None:intergenic 20.0%
!! TTATGAATAAACGATAGTTT+CGG - chr1_2:57478967-57478986 Msa0079570:intron 20.0%
!! AATTTGGATAGTTATAGTAA+TGG + chr1_2:57480182-57480201 None:intergenic 20.0%
!!! ATTTAAAATCTTTACATGCT+TGG - chr1_2:57480347-57480366 Msa0079570:intron 20.0%
!! GAAATAAACATTAAGACTTT+CGG + chr1_2:57480392-57480411 None:intergenic 20.0%
!!! ATATTTTGTTTTCAAGAACA+AGG - chr1_2:57480752-57480771 Msa0079570:intron 20.0%
!! AATTACACAATAATGATCAA+AGG + chr1_2:57480790-57480809 None:intergenic 20.0%
!!! GAACTTATATTTAAGATGAT+CGG - chr1_2:57481058-57481077 Msa0079570:intron 20.0%
!! CTTTCCAAAAAAATACTTAT+AGG - chr1_2:57481230-57481249 Msa0079570:intron 20.0%
!! AATACTTTATAAGTTCCTAT+TGG - chr1_2:57481453-57481472 Msa0079570:CDS 20.0%
!! CTTGAAATAATTTCTTCATT+TGG + chr1_2:57481754-57481773 None:intergenic 20.0%
!!! TTCATTATCGATTTAGTAAA+TGG - chr1_2:57481832-57481851 Msa0079570:intron 20.0%
!!! TGATTTTAAAAATCGTTATC+AGG - chr1_2:57481878-57481897 Msa0079570:intron 20.0%
!! TCTATAATTTCTTGCATATA+TGG - chr1_2:57482196-57482215 Msa0079570:intron 20.0%
!! GCATATGAAAAAAAAATACA+AGG - chr1_2:57482494-57482513 Msa0079570:intron 20.0%
!! CTAGATAAAATAATAGAAGT+CGG + chr1_2:57482824-57482843 None:intergenic 20.0%
!! TTGTTTATACTTGTGAAATA+TGG - chr1_2:57483194-57483213 Msa0079570:five_prime_UTR 20.0%
!! ATCTCATTATTATCTTAATG+CGG + chr1_2:57483283-57483302 None:intergenic 20.0%
! ATAGACAATAATAACAGATG+TGG - chr1_2:57476735-57476754 Msa0079570:three_prime_UTR 25.0%
! TAGACAATAATAACAGATGT+GGG - chr1_2:57476736-57476755 Msa0079570:three_prime_UTR 25.0%
! AATAGGAATAGAAATGAGAA+GGG + chr1_2:57476880-57476899 None:intergenic 25.0%
! TTACTTATGTTGTTATGTGT+AGG + chr1_2:57476909-57476928 None:intergenic 25.0%
! GAAAATAGAATTAAGCACTA+TGG + chr1_2:57476940-57476959 None:intergenic 25.0%
!!! TTTTGTTTTTCCAACTAAGT+CGG - chr1_2:57476960-57476979 Msa0079570:CDS 25.0%
! TGAATTAAAGAAGTCATCAT+CGG + chr1_2:57476995-57477014 None:intergenic 25.0%
!!! TTTTCTAGCATCATGAATTT+TGG - chr1_2:57477207-57477226 Msa0079570:intron 25.0%
!! TGCTTATGTGAAAACAATTT+TGG + chr1_2:57477320-57477339 None:intergenic 25.0%
! CTTAGAAAGCTTATGTAAAT+CGG - chr1_2:57477347-57477366 Msa0079570:intron 25.0%
! TGTAAATCGGATAATTCATA+AGG - chr1_2:57477360-57477379 Msa0079570:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr1_2:57477707-57477726 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr1_2:57477807-57477826 None:intergenic 25.0%
!! ATTTTCACATGAATTGTTGA+TGG - chr1_2:57477946-57477965 Msa0079570:CDS 25.0%
!! TTTTCACATGAATTGTTGAT+GGG - chr1_2:57477947-57477966 Msa0079570:CDS 25.0%
!! GATTTTGCATGAATTGTTAA+TGG - chr1_2:57477992-57478011 Msa0079570:CDS 25.0%
!!! GAATTGTTAATGGATTTTGT+TGG - chr1_2:57478002-57478021 Msa0079570:CDS 25.0%
! TACAAAAATAGACAAAGAGA+AGG + chr1_2:57478306-57478325 None:intergenic 25.0%
!!! TGTTTACCTTTTTCAATAGT+CGG + chr1_2:57478632-57478651 None:intergenic 25.0%
!!! TATTCTCTTTCCCTATTTTT+TGG - chr1_2:57478689-57478708 Msa0079570:intron 25.0%
! TACAAGTATGCCAAAAAATA+GGG + chr1_2:57478702-57478721 None:intergenic 25.0%
! TATGTATCAGACTTATGATA+AGG - chr1_2:57479242-57479261 Msa0079570:intron 25.0%
!! GTGTAAGAGGATAATATTTT+TGG - chr1_2:57479355-57479374 Msa0079570:CDS 25.0%
! CAGGAAAATTTATTTGGAAA+TGG + chr1_2:57479382-57479401 None:intergenic 25.0%
! TTTATGATAAATCTGCTGAT+GGG - chr1_2:57480270-57480289 Msa0079570:intron 25.0%
!!! TAAGAGCATTTTTGTAAGTT+AGG - chr1_2:57481389-57481408 Msa0079570:CDS 25.0%
! ATAATTTCTTCATTTGGCAA+GGG + chr1_2:57481748-57481767 None:intergenic 25.0%
! AATAATTTCTTCATTTGGCA+AGG + chr1_2:57481749-57481768 None:intergenic 25.0%
!! GAAAGAAAGAAATTTTTCAC+TGG + chr1_2:57482026-57482045 None:intergenic 25.0%
! GTGAAAAATTTCTTTCTTTC+TGG - chr1_2:57482026-57482045 Msa0079570:intron 25.0%
!! TTTTACTCGTAATAGTTTAC+TGG - chr1_2:57482472-57482491 Msa0079570:intron 25.0%
! AATCAACTGGAAAATAAAGT+TGG + chr1_2:57482702-57482721 None:intergenic 25.0%
! AGAAAACATATTGTAATTGC+AGG + chr1_2:57482756-57482775 None:intergenic 25.0%
! TCTAGTATAAGAGGAATTTA+CGG - chr1_2:57483028-57483047 Msa0079570:five_prime_UTR 25.0%
! GTCAAGTTATATGAAATTTG+CGG - chr1_2:57483059-57483078 Msa0079570:five_prime_UTR 25.0%
! TTATATGAAATTTGCGGAAA+AGG - chr1_2:57483065-57483084 Msa0079570:five_prime_UTR 25.0%
! TATAAATTGTGATTCGTATC+CGG - chr1_2:57483221-57483240 Msa0079570:five_prime_UTR 25.0%
! AGATAATAATGAGATAATCC+TGG - chr1_2:57483288-57483307 Msa0079570:five_prime_UTR 25.0%
!! ACTTTAGTTTGTTAGTTGAG+AGG + chr1_2:57476803-57476822 None:intergenic 30.0%
GAATAGGAATAGAAATGAGA+AGG + chr1_2:57476881-57476900 None:intergenic 30.0%
TTATGTGTAGGAATAGGAAT+AGG + chr1_2:57476897-57476916 None:intergenic 30.0%
ATGTTGTTATGTGTAGGAAT+AGG + chr1_2:57476903-57476922 None:intergenic 30.0%
GACTTCTTTAATTCATTGTC+CGG - chr1_2:57477000-57477019 Msa0079570:CDS 30.0%
CGATTTACATAAGCTTTCTA+AGG + chr1_2:57477349-57477368 None:intergenic 30.0%
!! ATTTTTGGAAACTTGGTATC+CGG + chr1_2:57477656-57477675 None:intergenic 30.0%
!! TCGTTTTGTTCGTATATCAA+GGG + chr1_2:57477882-57477901 None:intergenic 30.0%
!! TTCGTTTTGTTCGTATATCA+AGG + chr1_2:57477883-57477902 None:intergenic 30.0%
TATACGAACAAAACGAACTA+TGG - chr1_2:57477886-57477905 Msa0079570:intron 30.0%
! ATGATATTCAGGTTCTACAT+GGG - chr1_2:57478046-57478065 Msa0079570:CDS 30.0%
TAGGAAATGTTACATAGAGT+TGG + chr1_2:57478112-57478131 None:intergenic 30.0%
! TTGTGTCAAATTTTCAGCTT+AGG + chr1_2:57478131-57478150 None:intergenic 30.0%
ATGATAGCAACTTTAAGCTT+CGG + chr1_2:57478217-57478236 None:intergenic 30.0%
AAGCTTAAAGTTGCTATCAT+TGG - chr1_2:57478217-57478236 Msa0079570:CDS 30.0%
! TGTGTTTTCCTTTGTAATCA+TGG - chr1_2:57478422-57478441 Msa0079570:intron 30.0%
ATTTAGCACCATGATTACAA+AGG + chr1_2:57478433-57478452 None:intergenic 30.0%
AATACATTAGCCAGATATCT+TGG + chr1_2:57478459-57478478 None:intergenic 30.0%
! TTTTCAATGTTCTCTCATTC+AGG - chr1_2:57478488-57478507 Msa0079570:intron 30.0%
! TACGAGTCAAGATCTTTTAT+TGG - chr1_2:57478519-57478538 Msa0079570:intron 30.0%
! TCTTTTCCGACTATTGAAAA+AGG - chr1_2:57478623-57478642 Msa0079570:intron 30.0%
GTACAAGTATGCCAAAAAAT+AGG + chr1_2:57478703-57478722 None:intergenic 30.0%
AATGTGAACAAAATGAAGCA+AGG + chr1_2:57478906-57478925 None:intergenic 30.0%
TTTAACCACAAATCAGCTTA+AGG - chr1_2:57479076-57479095 Msa0079570:CDS 30.0%
!! AATTACCTTAAGCTGATTTG+TGG + chr1_2:57479084-57479103 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG + chr1_2:57479551-57479570 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG + chr1_2:57479598-57479617 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG + chr1_2:57479551-57479570 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG + chr1_2:57479598-57479617 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG + chr1_2:57479551-57479570 None:intergenic 30.0%
AAGACTAGAATTCGACATTA+AGG + chr1_2:57479863-57479882 None:intergenic 30.0%
CTATTAAATGCATTTCTTGC+AGG - chr1_2:57479887-57479906 Msa0079570:CDS 30.0%
CACGAGTATTCAAAAAATGT+GGG - chr1_2:57479950-57479969 Msa0079570:CDS 30.0%
AATGAATGAGAACCTACATA+GGG + chr1_2:57480208-57480227 None:intergenic 30.0%
CTTTATGATAAATCTGCTGA+TGG - chr1_2:57480269-57480288 Msa0079570:intron 30.0%
AAAGTATATCACCTTTGACA+AGG + chr1_2:57480318-57480337 None:intergenic 30.0%
GTCTTAATGTTTATTTCCTC+AGG - chr1_2:57480395-57480414 Msa0079570:intron 30.0%
TGAGATCAATACAAAAACCA+GGG + chr1_2:57480479-57480498 None:intergenic 30.0%
ATGAGATCAATACAAAAACC+AGG + chr1_2:57480480-57480499 None:intergenic 30.0%
ATCAAGTCAATGATAGGTTA+AGG + chr1_2:57480525-57480544 None:intergenic 30.0%
AAAGCAAGAAAAATCTGCAT+CGG + chr1_2:57480888-57480907 None:intergenic 30.0%
TAATTCATGTAGTGCTAGTT+TGG - chr1_2:57481202-57481221 Msa0079570:intron 30.0%
TAGGAACCAAATACTTACAA+TGG - chr1_2:57481408-57481427 Msa0079570:CDS 30.0%
AGGAACCAAATACTTACAAT+GGG - chr1_2:57481409-57481428 Msa0079570:CDS 30.0%
ATAGTCCCATTGTAAGTATT+TGG + chr1_2:57481417-57481436 None:intergenic 30.0%
CTTTATTAAACGCTACCAAT+AGG + chr1_2:57481471-57481490 None:intergenic 30.0%
ATTGTTGAAAATGACAACAG+TGG + chr1_2:57481509-57481528 None:intergenic 30.0%
TTGCAATGAGAGGAAAAAAA+AGG + chr1_2:57481622-57481641 None:intergenic 30.0%
TGGTCATCTGTTGTTAAAAT+CGG - chr1_2:57481942-57481961 Msa0079570:intron 30.0%
! AATTTTTCACTGGTGTCTTT+TGG + chr1_2:57482016-57482035 None:intergenic 30.0%
AAACATATGAGACCTTATAG+AGG - chr1_2:57482163-57482182 Msa0079570:intron 30.0%
! ATGAGGTATTTCACATAAGA+TGG + chr1_2:57482342-57482361 None:intergenic 30.0%
! ATTTCCTCGTCACATATTTT+AGG - chr1_2:57482370-57482389 Msa0079570:intron 30.0%
AAAACCTAAAATATGTGACG+AGG + chr1_2:57482377-57482396 None:intergenic 30.0%
TAACAGAAGTTTGTATTAGC+AGG - chr1_2:57482542-57482561 Msa0079570:intron 30.0%
TAATATTCCACTTTCAACTG+AGG - chr1_2:57482611-57482630 Msa0079570:intron 30.0%
GCTTGCTCAAATTTATCAAA+CGG - chr1_2:57482639-57482658 Msa0079570:intron 30.0%
CTGAAATGTTTAATCTGTTC+AGG - chr1_2:57482851-57482870 Msa0079570:CDS 30.0%
ATAAGAGGAATTTACGGATA+AGG - chr1_2:57483034-57483053 Msa0079570:five_prime_UTR 30.0%
TATGAAGTAATCCTGTTCTT+TGG - chr1_2:57483099-57483118 Msa0079570:five_prime_UTR 30.0%
ATGAAGTAATCCTGTTCTTT+GGG - chr1_2:57483100-57483119 Msa0079570:five_prime_UTR 30.0%
TAATAATGAGATAATCCTGG+AGG - chr1_2:57483291-57483310 Msa0079570:five_prime_UTR 30.0%
CTGGCATTAACGATACATAA+TGG + chr1_2:57476641-57476660 None:intergenic 35.0%
!! TAGAAATGAGAAGGGTATCT+TGG + chr1_2:57476872-57476891 None:intergenic 35.0%
GGAAATCTATTACTAACCGT+TGG + chr1_2:57477155-57477174 None:intergenic 35.0%
!! ACGTTTAATTTTGCTGTGCT+TGG - chr1_2:57477234-57477253 Msa0079570:intron 35.0%
AGAGTAGAGTAGCACATTAT+GGG + chr1_2:57477454-57477473 None:intergenic 35.0%
TAGAGTAGAGTAGCACATTA+TGG + chr1_2:57477455-57477474 None:intergenic 35.0%
AATTACAATATGAAACCCCC+TGG - chr1_2:57477482-57477501 Msa0079570:intron 35.0%
ATTACAATATGAAACCCCCT+GGG - chr1_2:57477483-57477502 Msa0079570:intron 35.0%
AGATGTTGTAAGACAGACTT+GGG - chr1_2:57477513-57477532 Msa0079570:intron 35.0%
GGACAAAAATTGTTAACACC+CGG + chr1_2:57477563-57477582 None:intergenic 35.0%
CTAAGGACTAACTAATCTGA+GGG + chr1_2:57477632-57477651 None:intergenic 35.0%
!! CGTTTTGTTCGTATATCAAG+GGG + chr1_2:57477881-57477900 None:intergenic 35.0%
! GATGATATTCAGGTTCTACA+TGG - chr1_2:57478045-57478064 Msa0079570:CDS 35.0%
! GAGTCAAGATCTTTTATTGG+TGG - chr1_2:57478522-57478541 Msa0079570:intron 35.0%
!! TCTTTTATTGGTGGCAAAGT+TGG - chr1_2:57478531-57478550 Msa0079570:intron 35.0%
!! GGTTCTTTTGTTGATAAACG+CGG - chr1_2:57478552-57478571 Msa0079570:intron 35.0%
! ATGGGATTGCATGTTTTCTT+TGG - chr1_2:57478588-57478607 Msa0079570:intron 35.0%
AAAGAGAATACGACTGAAGA+AGG + chr1_2:57478679-57478698 None:intergenic 35.0%
! TTAATTTTTCTTCGCCTTGC+TGG - chr1_2:57478774-57478793 Msa0079570:intron 35.0%
! TAATTTTTCTTCGCCTTGCT+GGG - chr1_2:57478775-57478794 Msa0079570:intron 35.0%
GGATAACAATCTACTTGTGA+AGG - chr1_2:57478811-57478830 Msa0079570:intron 35.0%
ACTCACACCTTTGTAAACAA+AGG - chr1_2:57478839-57478858 Msa0079570:intron 35.0%
CTCACACCTTTGTAAACAAA+GGG - chr1_2:57478840-57478859 Msa0079570:intron 35.0%
TCACACCTTTGTAAACAAAG+GGG - chr1_2:57478841-57478860 Msa0079570:intron 35.0%
TCATAAAAGTAGTGCTCTGA+TGG + chr1_2:57478953-57478972 None:intergenic 35.0%
AATGCATTTATCCCGTGTAA+TGG + chr1_2:57479056-57479075 None:intergenic 35.0%
AGCTAAGGAGACAAATAATC+AGG + chr1_2:57479401-57479420 None:intergenic 35.0%
!! TGTCTCCTTAGCTTTGTATT+TGG - chr1_2:57479408-57479427 Msa0079570:CDS 35.0%
GCATGTGTGATGTGAATATT+TGG + chr1_2:57479474-57479493 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG - chr1_2:57479501-57479520 Msa0079570:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG - chr1_2:57479512-57479531 Msa0079570:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG + chr1_2:57479538-57479557 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG + chr1_2:57479581-57479600 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG - chr1_2:57479501-57479520 Msa0079570:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG + chr1_2:57479538-57479557 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG + chr1_2:57479581-57479600 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG - chr1_2:57479501-57479520 Msa0079570:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG - chr1_2:57479512-57479531 Msa0079570:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG + chr1_2:57479538-57479557 None:intergenic 35.0%
ATACTGACAAACATGGTACA+AGG + chr1_2:57479836-57479855 None:intergenic 35.0%
ACTAGAATTCGACATTAAGG+CGG + chr1_2:57479860-57479879 None:intergenic 35.0%
GCACGAGTATTCAAAAAATG+TGG - chr1_2:57479949-57479968 Msa0079570:CDS 35.0%
ATCACAGTCAATAAACCCAA+GGG + chr1_2:57479991-57480010 None:intergenic 35.0%
TATCACAGTCAATAAACCCA+AGG + chr1_2:57479992-57480011 None:intergenic 35.0%
AGTGGCAAACAATGCAAATA+TGG + chr1_2:57480039-57480058 None:intergenic 35.0%
TCACCAGATGTTTATTTGAG+TGG - chr1_2:57480095-57480114 Msa0079570:intron 35.0%
ATCCAAATTTCTCCCTATGT+AGG - chr1_2:57480193-57480212 Msa0079570:intron 35.0%
AACCTACATAGGGAGAAATT+TGG + chr1_2:57480198-57480217 None:intergenic 35.0%
CAATGAATGAGAACCTACAT+AGG + chr1_2:57480209-57480228 None:intergenic 35.0%
TTCTCATTCATTGCTGAAAC+AGG - chr1_2:57480216-57480235 Msa0079570:intron 35.0%
GCTGATATCAAGTCAATGAT+AGG + chr1_2:57480531-57480550 None:intergenic 35.0%
!! GGAGTAACCTTTTAATTCCA+GGG + chr1_2:57480563-57480582 None:intergenic 35.0%
TGCAGAATCTAGAAATGTCA+AGG - chr1_2:57480685-57480704 Msa0079570:CDS 35.0%
! AGAAATGTCAAGGTACTTCT+CGG - chr1_2:57480695-57480714 Msa0079570:CDS 35.0%
!! AAGGTACTTCTCGGAATTTT+AGG - chr1_2:57480704-57480723 Msa0079570:CDS 35.0%
AAGCAAGAAAAATCTGCATC+GGG + chr1_2:57480887-57480906 None:intergenic 35.0%
TCAACGTAAACATCACTTAC+TGG + chr1_2:57480970-57480989 None:intergenic 35.0%
AGAGTCTTCTGTGAGTTTAT+TGG - chr1_2:57481013-57481032 Msa0079570:intron 35.0%
GAGTCTTCTGTGAGTTTATT+GGG - chr1_2:57481014-57481033 Msa0079570:intron 35.0%
ATTGTTGGAAATGGTTACAG+TGG + chr1_2:57481107-57481126 None:intergenic 35.0%
TGAGCGTAAATTGTTGGAAA+TGG + chr1_2:57481116-57481135 None:intergenic 35.0%
GTGATTTGAGCGTAAATTGT+TGG + chr1_2:57481122-57481141 None:intergenic 35.0%
TGCATAACATACTTAGTCGT+GGG + chr1_2:57481144-57481163 None:intergenic 35.0%
TTGCATAACATACTTAGTCG+TGG + chr1_2:57481145-57481164 None:intergenic 35.0%
CGACTAAGTATGTTATGCAA+TGG - chr1_2:57481145-57481164 Msa0079570:CDS 35.0%
! GAGAGCTTCTAAAAAAGTTG+AGG + chr1_2:57481339-57481358 None:intergenic 35.0%
CTCATGACTATGTTATGCAA+TGG - chr1_2:57481544-57481563 Msa0079570:intron 35.0%
GGAGAAAAAAACAGTAAAGC+TGG + chr1_2:57481601-57481620 None:intergenic 35.0%
TATTTCAAGAGTAGCGAAAC+AGG - chr1_2:57481765-57481784 Msa0079570:CDS 35.0%
CAGGTAGTTTAAACAATGTG+TGG - chr1_2:57481784-57481803 Msa0079570:CDS 35.0%
CTTCTAAACCTTGAGATGAT+GGG + chr1_2:57481917-57481936 None:intergenic 35.0%
ACTTCTAAACCTTGAGATGA+TGG + chr1_2:57481918-57481937 None:intergenic 35.0%
TATAATGGTAGTCAAGAGGA+TGG + chr1_2:57482086-57482105 None:intergenic 35.0%
TAAGACAAGCACGAGTATAA+TGG + chr1_2:57482101-57482120 None:intergenic 35.0%
! GATTAACTGACTCCTCTATA+AGG + chr1_2:57482178-57482197 None:intergenic 35.0%
TACTCTTGACAATAAGTTCC+TGG - chr1_2:57482272-57482291 Msa0079570:intron 35.0%
TGTTGCTGCATTTGATTGAA+TGG - chr1_2:57482296-57482315 Msa0079570:intron 35.0%
GTTGCTGCATTTGATTGAAT+GGG - chr1_2:57482297-57482316 Msa0079570:intron 35.0%
TTGCTGCATTTGATTGAATG+GGG - chr1_2:57482298-57482317 Msa0079570:intron 35.0%
! TTGAATGGGGTATCAATTGT+CGG - chr1_2:57482311-57482330 Msa0079570:intron 35.0%
CTCAGAATGTTAGAATCAAC+TGG + chr1_2:57482715-57482734 None:intergenic 35.0%
! TGAGTTGAGTCTAGTATAAG+AGG - chr1_2:57483019-57483038 Msa0079570:five_prime_UTR 35.0%
ATTGTTAGTATTGCAGCAAG+TGG - chr1_2:57483169-57483188 Msa0079570:five_prime_UTR 35.0%
GCATTAAGAATGACAAAGAC+CGG + chr1_2:57483243-57483262 None:intergenic 35.0%
GTTAATGCCAGAGACAATAG+TGG - chr1_2:57476650-57476669 Msa0079570:three_prime_UTR 40.0%
CTGAGATTGGTGAATTTGTC+TGG + chr1_2:57476827-57476846 None:intergenic 40.0%
! GATGTGAAAACCGACTTAGT+TGG + chr1_2:57476973-57476992 None:intergenic 40.0%
TTACAATATGAAACCCCCTG+GGG - chr1_2:57477484-57477503 Msa0079570:intron 40.0%
CAAGTCTGTCTTACAACATC+TGG + chr1_2:57477514-57477533 None:intergenic 40.0%
CAGATGTTGTAAGACAGACT+TGG - chr1_2:57477512-57477531 Msa0079570:intron 40.0%
CAAAAATTGTTAACACCCGG+AGG + chr1_2:57477560-57477579 None:intergenic 40.0%
TGGCAATTGAATGTATGGAC+TGG + chr1_2:57477584-57477603 None:intergenic 40.0%
CCTAAGGACTAACTAATCTG+AGG + chr1_2:57477633-57477652 None:intergenic 40.0%
! CCTCAGATTAGTTAGTCCTT+AGG - chr1_2:57477630-57477649 Msa0079570:intron 40.0%
! AGATTAGTTAGTCCTTAGGC+CGG - chr1_2:57477634-57477653 Msa0079570:intron 40.0%
TATGAATGTTAGGGCCTGTT+TGG - chr1_2:57477690-57477709 Msa0079570:intron 40.0%
! GGATTTTGTTGGATGAGAAC+TGG - chr1_2:57478013-57478032 Msa0079570:CDS 40.0%
GTTTGTGCTGGATGATATTC+AGG - chr1_2:57478035-57478054 Msa0079570:CDS 40.0%
ACCAAAAGGACTATTTCCTC+CGG - chr1_2:57478171-57478190 Msa0079570:intron 40.0%
AAAGTTGCTATCATTGGAGC+TGG - chr1_2:57478223-57478242 Msa0079570:CDS 40.0%
AAGTTGCTATCATTGGAGCT+GGG - chr1_2:57478224-57478243 Msa0079570:CDS 40.0%
GCTAAATGTGCCAAGATATC+TGG - chr1_2:57478446-57478465 Msa0079570:intron 40.0%
TCAATGTTCTCTCATTCAGG+TGG - chr1_2:57478491-57478510 Msa0079570:intron 40.0%
ACGCGGAAATCACATTGAAA+TGG - chr1_2:57478569-57478588 Msa0079570:intron 40.0%
CGCGGAAATCACATTGAAAT+GGG - chr1_2:57478570-57478589 Msa0079570:intron 40.0%
ACTGAAGAAGGACATGCATT+TGG + chr1_2:57478667-57478686 None:intergenic 40.0%
! AATTTTTCTTCGCCTTGCTG+GGG - chr1_2:57478776-57478795 Msa0079570:intron 40.0%
CACACCTTTGTAAACAAAGG+GGG - chr1_2:57478842-57478861 Msa0079570:intron 40.0%
! TTGACCCCCTTTGTTTACAA+AGG + chr1_2:57478849-57478868 None:intergenic 40.0%
GTAAACAAAGGGGGTCAAAT+TGG - chr1_2:57478851-57478870 Msa0079570:intron 40.0%
! AGAACTAGATTTTCGCTTCC+CGG - chr1_2:57479022-57479041 Msa0079570:CDS 40.0%
!! TGTGCATGTTTTTGTCTCCT+TGG - chr1_2:57479182-57479201 Msa0079570:intron 40.0%
!! GTGCATGTTTTTGTCTCCTT+GGG - chr1_2:57479183-57479202 Msa0079570:intron 40.0%
!! TGCATGTTTTTGTCTCCTTG+GGG - chr1_2:57479184-57479203 Msa0079570:intron 40.0%
ATTGAGGGACATACGGAATT+TGG - chr1_2:57479329-57479348 Msa0079570:CDS 40.0%
CGGAATTTGGATAGTGTAAG+AGG - chr1_2:57479342-57479361 Msa0079570:CDS 40.0%
GTCGTCCAAATACAAAGCTA+AGG + chr1_2:57479416-57479435 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG + chr1_2:57479498-57479517 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG + chr1_2:57479499-57479518 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG + chr1_2:57479498-57479517 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG + chr1_2:57479499-57479518 None:intergenic 40.0%
! AAACGGAACTTTTGATGCCT+TGG - chr1_2:57479649-57479668 Msa0079570:intron 40.0%
CCATTTGCTCCTTTGTATGT+GGG + chr1_2:57479498-57479517 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG + chr1_2:57479499-57479518 None:intergenic 40.0%
!! TCAGACTGGTTTATGTCCAA+AGG - chr1_2:57479918-57479937 Msa0079570:CDS 40.0%
AAATATGGTGAGCATGCAAC+GGG + chr1_2:57480024-57480043 None:intergenic 40.0%
CAAATATGGTGAGCATGCAA+CGG + chr1_2:57480025-57480044 None:intergenic 40.0%
TTTATTTGAGTGGCCCTATC+CGG - chr1_2:57480105-57480124 Msa0079570:intron 40.0%
CTCTATCTGTGATGTACTTC+CGG + chr1_2:57480127-57480146 None:intergenic 40.0%
! GGAAGTACATCACAGATAGA+GGG - chr1_2:57480126-57480145 Msa0079570:intron 40.0%
GAAGTACATCACAGATAGAG+GGG - chr1_2:57480127-57480146 Msa0079570:intron 40.0%
AAGTACATCACAGATAGAGG+GGG - chr1_2:57480128-57480147 Msa0079570:intron 40.0%
! AAACAGGTTCCATCTAAGGT+GGG - chr1_2:57480232-57480251 Msa0079570:intron 40.0%
TACAGGACTTTCCTTGTCAA+AGG - chr1_2:57480304-57480323 Msa0079570:intron 40.0%
! GGCTTCCACAATTTTCTTCT+CGG + chr1_2:57480424-57480443 None:intergenic 40.0%
CTAACCAGCAACATAAGCAT+CGG + chr1_2:57480445-57480464 None:intergenic 40.0%
!! GGGAGTAACCTTTTAATTCC+AGG + chr1_2:57480564-57480583 None:intergenic 40.0%
ACAGTGCAACTCAGATACAA+TGG - chr1_2:57480648-57480667 Msa0079570:CDS 40.0%
TGCAACTCAGATACAATGGT+TGG - chr1_2:57480652-57480671 Msa0079570:CDS 40.0%
GCAACTCAGATACAATGGTT+GGG - chr1_2:57480653-57480672 Msa0079570:CDS 40.0%
CTTTACGAACCCTTACATTC+TGG - chr1_2:57480811-57480830 Msa0079570:intron 40.0%
ATAGAGAAGGTTGTCTAACC+CGG + chr1_2:57480861-57480880 None:intergenic 40.0%
AGCAAGAAAAATCTGCATCG+GGG + chr1_2:57480886-57480905 None:intergenic 40.0%
TCCTGAAGACTATTACATCG+AGG - chr1_2:57480928-57480947 Msa0079570:CDS 40.0%
CCTGAAGACTATTACATCGA+GGG - chr1_2:57480929-57480948 Msa0079570:CDS 40.0%
AAACTCACAGAAGACTCTCT+TGG + chr1_2:57481011-57481030 None:intergenic 40.0%
AATGGATGAAACTGCACCAT+CGG - chr1_2:57481163-57481182 Msa0079570:intron 40.0%
TTGCATCGTCAGTTCAACAT+AGG - chr1_2:57481567-57481586 Msa0079570:intron 40.0%
TATGTTGGACTTGCAATGAG+AGG + chr1_2:57481632-57481651 None:intergenic 40.0%
CTCAAGGTTTAGAAGTGACT+TGG - chr1_2:57481922-57481941 Msa0079570:intron 40.0%
GGTCTAAATGGATCTTTACC+AGG + chr1_2:57481990-57482009 None:intergenic 40.0%
! GTCTTTTGGTCAGGTCTAAA+TGG + chr1_2:57482002-57482021 None:intergenic 40.0%
!! TTCTGGCTCTTACACAAAAC+AGG - chr1_2:57482043-57482062 Msa0079570:intron 40.0%
CGAGTATAATGGTAGTCAAG+AGG + chr1_2:57482090-57482109 None:intergenic 40.0%
!!! GCAGCTGCTGATATTTTTTG+TGG - chr1_2:57482137-57482156 Msa0079570:intron 40.0%
AATCAAATGCAGCAACAACC+AGG + chr1_2:57482293-57482312 None:intergenic 40.0%
CGAGGAAATGCATGAATATG+AGG + chr1_2:57482359-57482378 None:intergenic 40.0%
! ACCTTTCCTTTTGAATACCG+TGG - chr1_2:57482667-57482686 Msa0079570:intron 40.0%
! CCTTTCCTTTTGAATACCGT+GGG - chr1_2:57482668-57482687 Msa0079570:intron 40.0%
TCTAAAGATTGCTGTGACAC+TGG + chr1_2:57482779-57482798 None:intergenic 40.0%
TCAGGATTACATAGACAGCA+TGG - chr1_2:57482869-57482888 Msa0079570:CDS 40.0%
GATTACATAGACAGCATGGA+AGG - chr1_2:57482873-57482892 Msa0079570:CDS 40.0%
TTCAGCCTATATCTGTGATG+CGG - chr1_2:57482920-57482939 Msa0079570:CDS 40.0%
GTAGATGCCACTATTGTCTC+TGG + chr1_2:57476660-57476679 None:intergenic 45.0%
AGTTTGTGTGTGAGTGGTAG+TGG + chr1_2:57476767-57476786 None:intergenic 45.0%
CTTGTGAGTTTGTGTGTGAG+TGG + chr1_2:57476773-57476792 None:intergenic 45.0%
GTATCTTGGCTACGTAGGTT+GGG + chr1_2:57476858-57476877 None:intergenic 45.0%
TGTGTCTTTGCGAAACGTGT+GGG + chr1_2:57477076-57477095 None:intergenic 45.0%
ATGTGTCTTTGCGAAACGTG+TGG + chr1_2:57477077-57477096 None:intergenic 45.0%
AGACACATAGCCACAAGGTT+CGG - chr1_2:57477089-57477108 Msa0079570:CDS 45.0%
GTTTCCGACATGAGTACCAA+CGG - chr1_2:57477136-57477155 Msa0079570:intron 45.0%
CTAACCGTTGGTACTCATGT+CGG + chr1_2:57477143-57477162 None:intergenic 45.0%
CTGCATAAGCACTTGTGAGA+TGG + chr1_2:57477403-57477422 None:intergenic 45.0%
AAGCTCAAGCCAATCCAACT+AGG - chr1_2:57477428-57477447 Msa0079570:intron 45.0%
CATTATGGGCCTAGTTGGAT+TGG + chr1_2:57477440-57477459 None:intergenic 45.0%
TAGCACATTATGGGCCTAGT+TGG + chr1_2:57477445-57477464 None:intergenic 45.0%
TGTAAGACAGACTTGGGACT+TGG - chr1_2:57477519-57477538 Msa0079570:intron 45.0%
GTAAGACAGACTTGGGACTT+GGG - chr1_2:57477520-57477539 Msa0079570:intron 45.0%
TCGTATATCAAGGGGCTGTT+TGG + chr1_2:57477873-57477892 None:intergenic 45.0%
AGGTTCTACATGGGTCATGT+GGG - chr1_2:57478055-57478074 Msa0079570:CDS 45.0%
ACTTTCATGCCAGCACCAAA+AGG - chr1_2:57478157-57478176 Msa0079570:intron 45.0%
!! GGAAATAGTCCTTTTGGTGC+TGG + chr1_2:57478169-57478188 None:intergenic 45.0%
! TCCGGAGGAAATAGTCCTTT+TGG + chr1_2:57478175-57478194 None:intergenic 45.0%
TTCGGTCCTCGATAATGTTC+AGG + chr1_2:57478199-57478218 None:intergenic 45.0%
ACTCTTGGATCAAGGACATG+AGG - chr1_2:57478273-57478292 Msa0079570:intron 45.0%
AACAAAGGGGGTCAAATTGG+AGG - chr1_2:57478854-57478873 Msa0079570:intron 45.0%
! TAGATTTTCGCTTCCCGGTT+GGG - chr1_2:57479027-57479046 Msa0079570:CDS 45.0%
ATCACGCAATCAGAGCAGTA+TGG + chr1_2:57479125-57479144 None:intergenic 45.0%
TACTGCTCTGATTGCGTGAT+TGG - chr1_2:57479125-57479144 Msa0079570:intron 45.0%
! TCAACAAGAGCTCTGACAAC+TGG + chr1_2:57479297-57479316 None:intergenic 45.0%
AGAGCTCTTGTTGATCCAGA+TGG - chr1_2:57479303-57479322 Msa0079570:CDS 45.0%
TTGATCCAGATGGTGCATTG+AGG - chr1_2:57479313-57479332 Msa0079570:CDS 45.0%
TGATCCAGATGGTGCATTGA+GGG - chr1_2:57479314-57479333 Msa0079570:CDS 45.0%
ATGGTGCATTGAGGGACATA+CGG - chr1_2:57479322-57479341 Msa0079570:CDS 45.0%
TGTGCATGCACATGTGCAAT+GGG + chr1_2:57479450-57479469 None:intergenic 45.0%
ATGTGCATGCACATGTGCAA+TGG + chr1_2:57479451-57479470 None:intergenic 45.0%
ACACATGCACCCACATACAA+AGG - chr1_2:57479486-57479505 Msa0079570:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG - chr1_2:57479495-57479514 Msa0079570:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG - chr1_2:57479518-57479537 Msa0079570:intron 45.0%
ACACATGCACCCACATACAA+AGG - chr1_2:57479486-57479505 Msa0079570:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG - chr1_2:57479495-57479514 Msa0079570:intron 45.0%
ACACATGCACCCACATACAA+AGG - chr1_2:57479486-57479505 Msa0079570:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG - chr1_2:57479495-57479514 Msa0079570:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG - chr1_2:57479518-57479537 Msa0079570:intron 45.0%
AGGCGGAATACTGACAAACA+TGG + chr1_2:57479843-57479862 None:intergenic 45.0%
!!! TGCAGGTTAGCTTTTCAGAC+TGG - chr1_2:57479904-57479923 Msa0079570:CDS 45.0%
!! GACTGGTTTATGTCCAAAGG+TGG - chr1_2:57479921-57479940 Msa0079570:CDS 45.0%
! GTCAATAAACCCAAGGGCAT+AGG + chr1_2:57479985-57480004 None:intergenic 45.0%
ATTGTTTGCCACTAAGACCG+AGG - chr1_2:57480046-57480065 Msa0079570:CDS 45.0%
ACCTTTCAGCATCCGCAAAA+GGG + chr1_2:57480075-57480094 None:intergenic 45.0%
AACCTTTCAGCATCCGCAAA+AGG + chr1_2:57480076-57480095 None:intergenic 45.0%
GGGCCACTCAAATAAACATC+TGG + chr1_2:57480101-57480120 None:intergenic 45.0%
CTGTGATGTACTTCCGGATA+GGG + chr1_2:57480121-57480140 None:intergenic 45.0%
TCTGTGATGTACTTCCGGAT+AGG + chr1_2:57480122-57480141 None:intergenic 45.0%
! CGGAAGTACATCACAGATAG+AGG - chr1_2:57480125-57480144 Msa0079570:intron 45.0%
GCTGAAACAGGTTCCATCTA+AGG - chr1_2:57480228-57480247 Msa0079570:intron 45.0%
GAAACAGGTTCCATCTAAGG+TGG - chr1_2:57480231-57480250 Msa0079570:intron 45.0%
! AACAGGTTCCATCTAAGGTG+GGG - chr1_2:57480233-57480252 Msa0079570:intron 45.0%
!! GATGGGAGCACTTATGTTAC+AGG - chr1_2:57480287-57480306 Msa0079570:intron 45.0%
! ATTTTCTTCTCGGTAGCCTG+AGG + chr1_2:57480414-57480433 None:intergenic 45.0%
GGCTACCGAGAAGAAAATTG+TGG - chr1_2:57480416-57480435 Msa0079570:intron 45.0%
TTTAATTCCAGGGACATCGC+AGG + chr1_2:57480553-57480572 None:intergenic 45.0%
GCGATGTCCCTGGAATTAAA+AGG - chr1_2:57480553-57480572 Msa0079570:intron 45.0%
AAAGGTTACTCCCATCAGAG+TGG - chr1_2:57480571-57480590 Msa0079570:intron 45.0%
ACGAACCCTTACATTCTGGA+TGG - chr1_2:57480815-57480834 Msa0079570:intron 45.0%
AGGCAACTGAAGAAAGCTAC+CGG - chr1_2:57480839-57480858 Msa0079570:intron 45.0%
GCAAGAAAAATCTGCATCGG+GGG + chr1_2:57480885-57480904 None:intergenic 45.0%
CCCTCGATGTAATAGTCTTC+AGG + chr1_2:57480932-57480951 None:intergenic 45.0%
GACTATTACATCGAGGGACA+AGG - chr1_2:57480935-57480954 Msa0079570:CDS 45.0%
CAAGTTGCTTGATGAACCGA+TGG + chr1_2:57481182-57481201 None:intergenic 45.0%
CTCTTATCAGTGCTCGATCA+TGG + chr1_2:57481375-57481394 None:intergenic 45.0%
! TCATTTGGCAAGGGCATGTA+TGG + chr1_2:57481739-57481758 None:intergenic 45.0%
TCGTTGTTCCCATCATCTCA+AGG - chr1_2:57481906-57481925 Msa0079570:intron 45.0%
! TTCACTGGTGTCTTTTGGTC+AGG + chr1_2:57482011-57482030 None:intergenic 45.0%
ATGGTAGTCAAGAGGATGGA+GGG + chr1_2:57482082-57482101 None:intergenic 45.0%
AATGGTAGTCAAGAGGATGG+AGG + chr1_2:57482083-57482102 None:intergenic 45.0%
TATCAGCAGCTGCAAACTTG+AGG + chr1_2:57482130-57482149 None:intergenic 45.0%
! AATGGGGTATCAATTGTCGG+TGG - chr1_2:57482314-57482333 Msa0079570:intron 45.0%
GCTCTATCCTCAGTTGAAAG+TGG + chr1_2:57482621-57482640 None:intergenic 45.0%
CCCACGGTATTCAAAAGGAA+AGG + chr1_2:57482671-57482690 None:intergenic 45.0%
! ATGGAAGGTGCAACCTTATC+CGG - chr1_2:57482888-57482907 Msa0079570:CDS 45.0%
TCAGCCTATATCTGTGATGC+GGG - chr1_2:57482921-57482940 Msa0079570:CDS 45.0%
GAGCTTCTTGCACAGTCTAA+AGG - chr1_2:57482969-57482988 Msa0079570:exon 45.0%
GGAAGTGATCACTGTACAAG+CGG - chr1_2:57483312-57483331 Msa0079570:five_prime_UTR 45.0%
TTGGGAGGAGATGCTGAGAT+TGG + chr1_2:57476840-57476859 None:intergenic 50.0%
GGTATCTTGGCTACGTAGGT+TGG + chr1_2:57476859-57476878 None:intergenic 50.0%
!! GAAGGGTATCTTGGCTACGT+AGG + chr1_2:57476863-57476882 None:intergenic 50.0%
GTAGCAGAGAGTGAAGTTGC+CGG + chr1_2:57477022-57477041 None:intergenic 50.0%
ACTCGTGCTGGAGATTCTGT+TGG - chr1_2:57477040-57477059 Msa0079570:CDS 50.0%
CGCAAAGACACATAGCCACA+AGG - chr1_2:57477084-57477103 Msa0079570:CDS 50.0%
AATATGAAACCCCCTGGGGT+TGG - chr1_2:57477488-57477507 Msa0079570:intron 50.0%
GGTCTCAGGTTCAAATCCTC+CGG - chr1_2:57477541-57477560 Msa0079570:intron 50.0%
GTCTCAGGTTCAAATCCTCC+GGG - chr1_2:57477542-57477561 Msa0079570:intron 50.0%
GGGGGTGGCAATTGAATGTA+TGG + chr1_2:57477589-57477608 None:intergenic 50.0%
ACTAATCTCACCGTCCACTG+GGG + chr1_2:57477609-57477628 None:intergenic 50.0%
GACTAATCTCACCGTCCACT+GGG + chr1_2:57477610-57477629 None:intergenic 50.0%
GAAACTTGGTATCCGGCCTA+AGG + chr1_2:57477649-57477668 None:intergenic 50.0%
!! GGATGAGAACTGGTTTGTGC+TGG - chr1_2:57478023-57478042 Msa0079570:CDS 50.0%
CAGGTTCTACATGGGTCATG+TGG - chr1_2:57478054-57478073 Msa0079570:CDS 50.0%
CCTCGATAATGTTCAGGCTC+CGG + chr1_2:57478193-57478212 None:intergenic 50.0%
GTCAACTGCAGTCGAACTCT+TGG - chr1_2:57478258-57478277 Msa0079570:intron 50.0%
GCAGTCGAACTCTTGGATCA+AGG - chr1_2:57478265-57478284 Msa0079570:intron 50.0%
! CTAGATTTTCGCTTCCCGGT+TGG - chr1_2:57479026-57479045 Msa0079570:CDS 50.0%
! AGATTTTCGCTTCCCGGTTG+GGG - chr1_2:57479028-57479047 Msa0079570:CDS 50.0%
GCAATGCAATGACATCCCCA+AGG + chr1_2:57479202-57479221 None:intergenic 50.0%
TGGACTCAGTGCAAGAGCTA+CGG + chr1_2:57479277-57479296 None:intergenic 50.0%
ATGTCCCTCAATGCACCATC+TGG + chr1_2:57479321-57479340 None:intergenic 50.0%
ATCCAGTTGCCTATGCCCTT+GGG - chr1_2:57479973-57479992 Msa0079570:CDS 50.0%
! TCCCTTTTGCGGATGCTGAA+AGG - chr1_2:57480071-57480090 Msa0079570:intron 50.0%
TAGAGGGGGCAGGTATAGTT+CGG - chr1_2:57480142-57480161 Msa0079570:intron 50.0%
GAAGCCGATGCTTATGTTGC+TGG - chr1_2:57480438-57480457 Msa0079570:intron 50.0%
!! GGTTAGTAGTTTGCTTGCCC+TGG - chr1_2:57480459-57480478 Msa0079570:intron 50.0%
GTTACTCCCATCAGAGTGGA+GGG - chr1_2:57480575-57480594 Msa0079570:intron 50.0%
! CCTTTTCCCTCCACTCTGAT+GGG + chr1_2:57480584-57480603 None:intergenic 50.0%
! TCCTTTTCCCTCCACTCTGA+TGG + chr1_2:57480585-57480604 None:intergenic 50.0%
ACCCTTACATTCTGGATGGC+AGG - chr1_2:57480819-57480838 Msa0079570:intron 50.0%
GCCTGCCATCCAGAATGTAA+GGG + chr1_2:57480823-57480842 None:intergenic 50.0%
TGCCTGCCATCCAGAATGTA+AGG + chr1_2:57480824-57480843 None:intergenic 50.0%
GGCAACTGAAGAAAGCTACC+GGG - chr1_2:57480840-57480859 Msa0079570:intron 50.0%
ATCAGATGTGTTCTGACGCC+AGG - chr1_2:57481709-57481728 Msa0079570:CDS 50.0%
! AAGGGCATGTATGGATCTCC+TGG + chr1_2:57481730-57481749 None:intergenic 50.0%
GATCTTTACCAGGTCCCTCA+CGG + chr1_2:57481980-57481999 None:intergenic 50.0%
CTCTGCCCACGGTATTCAAA+AGG + chr1_2:57482676-57482695 None:intergenic 50.0%
AAAGTTGGAAGCTCTGCCCA+CGG + chr1_2:57482687-57482706 None:intergenic 50.0%
TGAAGTTTGCCTGCCGGATA+AGG + chr1_2:57482904-57482923 None:intergenic 50.0%
ATAGGCTGAAGTTTGCCTGC+CGG + chr1_2:57482910-57482929 None:intergenic 50.0%
CAGCCTATATCTGTGATGCG+GGG - chr1_2:57482922-57482941 Msa0079570:CDS 50.0%
AGCCTATATCTGTGATGCGG+GGG - chr1_2:57482923-57482942 Msa0079570:CDS 50.0%
TTCCCCCGCATCACAGATAT+AGG + chr1_2:57482928-57482947 None:intergenic 50.0%
! GGGAAGAATTGGTGGCATTG+CGG - chr1_2:57482943-57482962 Msa0079570:CDS 50.0%
! AGAATTGGTGGCATTGCGGA+AGG - chr1_2:57482947-57482966 Msa0079570:CDS 50.0%
ATGTCACACGCCCAAAGAAC+AGG + chr1_2:57483113-57483132 None:intergenic 50.0%
GTACAGTGATCACTTCCTCC+AGG + chr1_2:57483309-57483328 None:intergenic 50.0%
! TCTTGGCTACGTAGGTTGGG+AGG + chr1_2:57476855-57476874 None:intergenic 55.0%
TCACTCTCTGCTACTCGTGC+TGG - chr1_2:57477028-57477047 Msa0079570:CDS 55.0%
AGCAACGAAGCCGAACCTTG+TGG + chr1_2:57477102-57477121 None:intergenic 55.0%
GGTTCGGCTTCGTTGCTCTT+TGG - chr1_2:57477105-57477124 Msa0079570:intron 55.0%
ACAACATCTGGCCAACCCCA+GGG + chr1_2:57477502-57477521 None:intergenic 55.0%
TACAACATCTGGCCAACCCC+AGG + chr1_2:57477503-57477522 None:intergenic 55.0%
AGACTTGGGACTTGGGTCTC+AGG - chr1_2:57477527-57477546 Msa0079570:intron 55.0%
ATTCAATTGCCACCCCCCAG+TGG - chr1_2:57477592-57477611 Msa0079570:intron 55.0%
TAATCTCACCGTCCACTGGG+GGG + chr1_2:57477607-57477626 None:intergenic 55.0%
CTAATCTCACCGTCCACTGG+GGG + chr1_2:57477608-57477627 None:intergenic 55.0%
GGACTAATCTCACCGTCCAC+TGG + chr1_2:57477611-57477630 None:intergenic 55.0%
CGATAATGTTCAGGCTCCGG+AGG + chr1_2:57478190-57478209 None:intergenic 55.0%
CCGGAGCCTGAACATTATCG+AGG - chr1_2:57478190-57478209 Msa0079570:intron 55.0%
ATCATTGGAGCTGGGCTTGC+TGG - chr1_2:57478232-57478251 Msa0079570:CDS 55.0%
GATCCAGTTGCCTATGCCCT+TGG - chr1_2:57479972-57479991 Msa0079570:CDS 55.0%
! AACCCAAGGGCATAGGCAAC+TGG + chr1_2:57479978-57479997 None:intergenic 55.0%
AAGGGAAGCCTCGGTCTTAG+TGG + chr1_2:57480057-57480076 None:intergenic 55.0%
! AGACCGAGGCTTCCCTTTTG+CGG - chr1_2:57480060-57480079 Msa0079570:intron 55.0%
CATCCGCAAAAGGGAAGCCT+CGG + chr1_2:57480066-57480085 None:intergenic 55.0%
ACATCACAGATAGAGGGGGC+AGG - chr1_2:57480132-57480151 Msa0079570:intron 55.0%
CTCTGCATCCCCACCTTAGA+TGG + chr1_2:57480244-57480263 None:intergenic 55.0%
ATATCAGCCTGCGATGTCCC+TGG - chr1_2:57480543-57480562 Msa0079570:intron 55.0%
GGTTACTCCCATCAGAGTGG+AGG - chr1_2:57480574-57480593 Msa0079570:intron 55.0%
CCCATCAGAGTGGAGGGAAA+AGG - chr1_2:57480581-57480600 Msa0079570:intron 55.0%
CGAACTCGTTGGAGTTCCTG+TGG - chr1_2:57480623-57480642 Msa0079570:intron 55.0%
CTGAGTTGCACTGTGACCAC+AGG + chr1_2:57480642-57480661 None:intergenic 55.0%
! CTGCATCGGGGGTATAGAGA+AGG + chr1_2:57480874-57480893 None:intergenic 55.0%
GGCCAATCTCTGTACCGTGA+GGG - chr1_2:57481963-57481982 Msa0079570:intron 55.0%
GTCCCTCACGGTACAGAGAT+TGG + chr1_2:57481968-57481987 None:intergenic 55.0%
GCAGCTGCAAACTTGAGGTC+TGG + chr1_2:57482125-57482144 None:intergenic 55.0%
AAGGTGCAACCTTATCCGGC+AGG - chr1_2:57482892-57482911 Msa0079570:CDS 55.0%
CTGTGATGCGGGGGAAGAAT+TGG - chr1_2:57482932-57482951 Msa0079570:CDS 55.0%
TGATGCGGGGGAAGAATTGG+TGG - chr1_2:57482935-57482954 Msa0079570:CDS 55.0%
AACATCTGGCCAACCCCAGG+GGG + chr1_2:57477500-57477519 None:intergenic 60.0%
CAACATCTGGCCAACCCCAG+GGG + chr1_2:57477501-57477520 None:intergenic 60.0%
AATTGCCACCCCCCAGTGGA+CGG - chr1_2:57477596-57477615 Msa0079570:intron 60.0%
TTCTTCGCCTTGCTGGGGCT+AGG - chr1_2:57478781-57478800 Msa0079570:intron 60.0%
! CGTGTAATGGAGCCCCAACC+GGG + chr1_2:57479043-57479062 None:intergenic 60.0%
! CCGTGTAATGGAGCCCCAAC+CGG + chr1_2:57479044-57479063 None:intergenic 60.0%
CCGGTTGGGGCTCCATTACA+CGG - chr1_2:57479041-57479060 Msa0079570:CDS 60.0%
CGGTTGGGGCTCCATTACAC+GGG - chr1_2:57479042-57479061 Msa0079570:CDS 60.0%
ACTCGTGCGTGTGCCACCTT+TGG + chr1_2:57479937-57479956 None:intergenic 60.0%
CGGCCAATCTCTGTACCGTG+AGG - chr1_2:57481962-57481981 Msa0079570:intron 60.0%
TCTCTGTACCGTGAGGGACC+TGG - chr1_2:57481969-57481988 Msa0079570:intron 60.0%
TTCGCCTTGCTGGGGCTAGG+TGG - chr1_2:57478784-57478803 Msa0079570:intron 65.0%
TCGCCTTGCTGGGGCTAGGT+GGG - chr1_2:57478785-57478804 Msa0079570:intron 65.0%
TTGCTGGGGCTAGGTGGGTG+CGG - chr1_2:57478790-57478809 Msa0079570:intron 65.0%
TCTCACCGTCCACTGGGGGG+TGG + chr1_2:57477604-57477623 None:intergenic 70.0%
GCACCCACCTAGCCCCAGCA+AGG + chr1_2:57478791-57478810 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57476620 57483362 57476620 ID=Msa0079570;Name=Msa0079570
chr1_2 mRNA 57476620 57483362 57476620 ID=Msa0079570-mRNA-1;Parent=Msa0079570;Name=Msa0079570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=375|1|1|1|1|1|14|325|579
chr1_2 exon 57476620 57477109 57476620 ID=Msa0079570-mRNA-1:exon:18198;Parent=Msa0079570-mRNA-1
chr1_2 exon 57477918 57478082 57477918 ID=Msa0079570-mRNA-1:exon:18197;Parent=Msa0079570-mRNA-1
chr1_2 exon 57478196 57478268 57478196 ID=Msa0079570-mRNA-1:exon:18196;Parent=Msa0079570-mRNA-1
chr1_2 exon 57479013 57479141 57479013 ID=Msa0079570-mRNA-1:exon:18195;Parent=Msa0079570-mRNA-1
chr1_2 exon 57479276 57479432 57479276 ID=Msa0079570-mRNA-1:exon:18194;Parent=Msa0079570-mRNA-1
chr1_2 exon 57479523 57479565 57479523 ID=Msa0079570-mRNA-1:exon:18193;Parent=Msa0079570-mRNA-1
chr1_2 exon 57479657 57479744 57479657 ID=Msa0079570-mRNA-1:exon:18192;Parent=Msa0079570-mRNA-1
chr1_2 exon 57479829 57480073 57479829 ID=Msa0079570-mRNA-1:exon:18191;Parent=Msa0079570-mRNA-1
chr1_2 exon 57480626 57480730 57480626 ID=Msa0079570-mRNA-1:exon:18190;Parent=Msa0079570-mRNA-1
chr1_2 exon 57480885 57480958 57480885 ID=Msa0079570-mRNA-1:exon:18189;Parent=Msa0079570-mRNA-1
chr1_2 exon 57481107 57481179 57481107 ID=Msa0079570-mRNA-1:exon:18188;Parent=Msa0079570-mRNA-1
chr1_2 exon 57481338 57481472 57481338 ID=Msa0079570-mRNA-1:exon:18187;Parent=Msa0079570-mRNA-1
chr1_2 exon 57481688 57481812 57481688 ID=Msa0079570-mRNA-1:exon:18186;Parent=Msa0079570-mRNA-1
chr1_2 exon 57482825 57483362 57482825 ID=Msa0079570-mRNA-1:exon:18185;Parent=Msa0079570-mRNA-1
chr1_2 five_prime_UTR 57482988 57483362 57482988 ID=Msa0079570-mRNA-1:five_prime_utr;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57482825 57482987 57482825 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57481688 57481812 57481688 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57481338 57481472 57481338 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57481107 57481179 57481107 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57480885 57480958 57480885 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57480626 57480730 57480626 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57479829 57480073 57479829 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57479657 57479744 57479657 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57479523 57479565 57479523 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57479276 57479432 57479276 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57479013 57479141 57479013 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57478196 57478268 57478196 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57477918 57478082 57477918 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 CDS 57476945 57477109 57476945 ID=Msa0079570-mRNA-1:cds;Parent=Msa0079570-mRNA-1
chr1_2 three_prime_UTR 57476620 57476944 57476620 ID=Msa0079570-mRNA-1:three_prime_utr;Parent=Msa0079570-mRNA-1
Gene Sequence

>Msa0079570

ATGATGACTTCTTTAATTCATTGTCCGGCAACTTCACTCTCTGCTACTCGTGCTGGAGATTCTGTTGGTTTCTTTGTTCCCACACGTTTCGCAAAGACACATAGCCACAAGGTTCGGCTTCGTTGCTCTTTGGATTCTAATGTTTCCGACATGAGTACCAACGCACCAAAAGGACTATTTCCTCCGGAGCCTGAACATTATCGAGGACCGAAGCTTAAAGTTGCTATCATTGGAGCTGGGCTTGCTGGCATGTCAACTGCAGTCGAACTCTTGGATCAAGGACATGAGGTGGATATATACGAGTCAAGATCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGATAAACGCGGAAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGACTATTGAAAAAGGTGGGTGCGGATAACAATCTACTTGTGAAGGATCACACTCACACCTTTGTAAACAAAGGGGGTCAAATTGGAGAACTAGATTTTCGCTTCCCGGTTGGGGCTCCATTACACGGGATAAATGCATTTTTAACCACAAATCAGCTTAAGACTTATGATAAGGCTAGAAATGCCGTAGCTCTTGCACTGAGTCCAGTTGTCAGAGCTCTTGTTGATCCAGATGGTGCATTGAGGGACATACGGAATTTGGATAGTGTTAGCTTTTCAGACTGGTTTATGTCCAAAGGTGGCACACGCACGAGTATTCAAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTGATAATATCAGTGCCCGTTGCATGCTCACCATATTTGCATTGTTTGCCACTAAGACCGAGGCTTCCCTTTTGCGGATGCTGAAAGGTTCACCAGATGTTTATTTGAGTGGCCCTATCCGGAAGTACATCACAGATAGAGGGGGCAGGTTCCATCTAAGGTGGGGATGCAGAGAAGTACTTTATGATAAATCTGCTGATGGGAGCACTTATGTTACAGGACTTTCCTTGTCAAAGGCTACCGAGAAGAAAATTGTGGAAGCCGATGCTTATGTTGCTGCCTGCGATGTCCCTGGAATTAAAAGGTTACTCCCATCAGAGTGGAGGGAAAAGGAGTTTTTCAATAACATATACGAACTCGTTGGAGTTCCTGTGGTCACAGTGCAACTCAGATACAATGGTTGGGTAACTGAATTGCAGAATCTAGAAATGTCAAGGCAACTGAAGAAAGCTACCGGGTTAGACAACCTTCTCTATACCCCCGATGCAGATTTTTCTTGCTTTGCAGATCTTGCACTTGCATCTCCTGAAGACTATTACATCGAGGGACAAGGATCATTACTCCAATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTGCCAAATGAAGAAATTATTTCAAGAGTAGCGAAACAGGTTATATCGTTGTTCCCATCATCTCAAGGTTTAGAAGTGACTTGGTCATCTGTTGTTAAAATCGGCCAATCTCTGTACCGTGAGGGACCTGGTAAAGATCCATTTAGACCTGACCAAAAGACACCAGTGAAAAATTTCTTTCTTTCTGGCTCTTACACAAAACAGGATTACATAGACAGCATGGAAGGTGCAACCTTATCCGGCAGGCAAACTTCAGCCTATATCTGTGATGCGGGGGAAGAATTGGTGGCATTGCGGAAGGAGCTTCTTGCACAGTCTAAAGGCGACATTAAATTTACAAATACTAAAGATGAGTTGAGTCTAGTATAA

Protein sequence

>Msa0079570

MMTSLIHCPATSLSATRAGDSVGFFVPTRFAKTHSHKVRLRCSLDSNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADNNLLVKDHTHTFVNKGGQIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGALRDIRNLDSVSFSDWFMSKGGTRTSIQKMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDRGGRFHLRWGCREVLYDKSADGSTYVTGLSLSKATEKKIVEADAYVAACDVPGIKRLLPSEWREKEFFNNIYELVGVPVVTVQLRYNGWVTELQNLEMSRQLKKATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVAKQVISLFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQTSAYICDAGEELVALRKELLAQSKGDIKFTNTKDELSLV*