AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1425600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425600 MtrunA17_Chr1g0207981 97.089 481 14 0 1 481 1 481 0.0 965
Msa1425600 MtrunA17_Chr4g0053501 46.072 471 238 4 9 474 7 466 4.74e-156 452
Msa1425600 MtrunA17_Chr4g0053321 46.497 471 236 4 9 474 22 481 5.45e-146 427
Msa1425600 MtrunA17_Chr5g0401721 43.220 472 257 8 9 473 4 471 3.14e-133 394
Msa1425600 MtrunA17_Chr3g0098111 41.300 477 249 12 12 472 8 469 8.72e-118 354
Msa1425600 MtrunA17_Chr1g0161351 41.561 474 254 11 11 472 35 497 5.61e-114 345
Msa1425600 MtrunA17_Chr6g0464841 38.745 462 257 8 13 469 11 451 1.07e-113 343
Msa1425600 MtrunA17_Chr6g0464861 39.706 476 254 11 1 469 1 450 4.52e-113 341
Msa1425600 MtrunA17_Chr1g0207971 40.733 464 255 8 12 472 7 453 8.52e-113 340
Msa1425600 MtrunA17_Chr6g0464871 39.394 462 254 9 13 469 23 463 2.72e-112 340
Msa1425600 MtrunA17_Chr6g0464881 38.994 477 262 11 5 474 2 456 2.94e-112 339
Msa1425600 MtrunA17_Chr8g0377921 38.285 478 259 13 14 473 5 464 1.83e-110 335
Msa1425600 MtrunA17_Chr7g0249981 38.689 473 266 9 4 473 16 467 5.94e-110 334
Msa1425600 MtrunA17_Chr1g0207861 40.326 491 257 14 13 480 8 485 6.71e-110 334
Msa1425600 MtrunA17_Chr8g0365811 39.076 476 269 11 9 472 491 957 1.26e-108 344
Msa1425600 MtrunA17_Chr8g0365811 38.901 473 272 8 12 472 8 475 1.64e-100 322
Msa1425600 MtrunA17_Chr5g0393591 38.889 468 239 8 13 477 17 440 2.78e-108 329
Msa1425600 MtrunA17_Chr6g0464921 36.345 476 274 10 4 472 2 455 1.55e-105 322
Msa1425600 MtrunA17_Chr5g0414331 36.975 476 269 10 12 481 12 462 1.26e-104 320
Msa1425600 MtrunA17_Chr7g0250001 39.019 469 256 11 11 473 4 448 7.58e-104 317
Msa1425600 MtrunA17_Chr8g0377941 37.759 482 257 14 14 476 8 465 3.29e-103 316
Msa1425600 MtrunA17_Chr1g0207951 40.173 463 260 7 12 472 123 570 1.67e-102 330
Msa1425600 MtrunA17_Chr1g0207951 38.055 473 262 12 12 472 655 1108 3.16e-94 308
Msa1425600 MtrunA17_Chr5g0414321 36.461 469 265 11 12 473 10 452 1.41e-100 309
Msa1425600 MtrunA17_Chr8g0380531 38.034 468 264 9 12 472 9 457 5.84e-100 308
Msa1425600 MtrunA17_Chr3g0121991 35.569 492 284 12 1 472 67 545 7.37e-98 305
Msa1425600 MtrunA17_Chr3g0122001 35.744 484 270 12 13 472 486 952 2.23e-97 314
Msa1425600 MtrunA17_Chr3g0122001 35.135 481 278 13 13 472 6 473 2.87e-94 305
Msa1425600 MtrunA17_Chr1g0207831 37.238 478 280 9 12 481 7 472 8.39e-97 300
Msa1425600 MtrunA17_Chr7g0249931 36.887 469 266 11 12 473 39 484 1.69e-92 289
Msa1425600 MtrunA17_Chr1g0207931 35.729 473 226 12 12 472 91 497 2.30e-86 274
Msa1425600 MtrunA17_Chr6g0454301 33.680 481 289 14 13 474 263 732 3.78e-79 261
Msa1425600 MtrunA17_Chr6g0454301 35.470 234 141 4 242 471 1 228 1.84e-46 172
Msa1425600 MtrunA17_Chr6g0454141 31.211 487 295 9 13 474 10 481 2.09e-78 253
Msa1425600 MtrunA17_Chr3g0078841 31.902 489 287 12 13 474 10 479 2.27e-78 252
Msa1425600 MtrunA17_Chr6g0454191 31.579 494 285 13 13 474 10 482 4.14e-78 252
Msa1425600 MtrunA17_Chr6g0454341 31.034 493 286 13 13 474 10 479 7.75e-77 248
Msa1425600 MtrunA17_Chr8g0336331 32.049 493 280 14 13 474 10 478 2.85e-76 247
Msa1425600 MtrunA17_Chr5g0426431 32.777 479 294 10 13 474 12 479 5.78e-76 246
Msa1425600 MtrunA17_Chr6g0453961 30.661 499 291 12 9 474 15 491 6.62e-76 246
Msa1425600 MtrunA17_Chr6g0454401 31.526 498 280 13 13 474 10 482 1.98e-75 245
Msa1425600 MtrunA17_Chr3g0092641 32.992 488 281 14 13 474 12 479 4.66e-75 244
Msa1425600 MtrunA17_Chr6g0454181 31.138 501 289 14 6 474 5 481 1.35e-74 243
Msa1425600 MtrunA17_Chr6g0454331 30.285 492 295 10 13 474 7 480 3.13e-74 241
Msa1425600 MtrunA17_Chr8g0359821 30.769 494 286 10 13 474 10 479 4.02e-74 241
Msa1425600 MtrunA17_Chr6g0454361 31.737 501 296 14 1 474 1 482 1.38e-73 240
Msa1425600 MtrunA17_Chr5g0423981 31.435 474 286 11 8 474 5 446 1.92e-73 238
Msa1425600 MtrunA17_Chr6g0454261 30.390 487 299 11 13 474 10 481 9.72e-73 238
Msa1425600 MtrunA17_Chr7g0217881 32.211 475 288 11 13 474 10 463 2.69e-72 236
Msa1425600 MtrunA17_Chr2g0278711 30.769 481 301 12 13 474 11 478 3.78e-72 236
Msa1425600 MtrunA17_Chr6g0453951 30.832 493 289 12 13 474 57 528 5.64e-72 237
Msa1425600 MtrunA17_Chr4g0050341 31.643 493 294 15 5 469 10 487 5.93e-72 236
Msa1425600 MtrunA17_Chr6g0454291 31.006 487 296 10 13 474 7 478 5.82e-70 230
Msa1425600 MtrunA17_Chr6g0452771 31.000 500 291 12 6 474 5 481 8.86e-70 230
Msa1425600 MtrunA17_Chr6g0454321 31.613 465 288 14 13 458 10 463 5.46e-69 232
Msa1425600 MtrunA17_Chr6g0454201 31.250 512 284 13 1 474 1 482 1.40e-68 227
Msa1425600 MtrunA17_Chr7g0249961 45.455 242 124 4 235 473 24 260 1.03e-67 218
Msa1425600 MtrunA17_Chr6g0454211 30.801 487 297 10 13 474 297 768 1.18e-67 231
Msa1425600 MtrunA17_Chr6g0454211 32.536 209 104 5 182 386 61 236 5.46e-28 117
Msa1425600 MtrunA17_Chr6g0454151 30.992 484 298 13 13 474 10 479 1.04e-66 222
Msa1425600 MtrunA17_Chr3g0118691 29.412 493 312 12 3 473 5 483 1.15e-66 222
Msa1425600 MtrunA17_Chr3g0118671 28.980 490 302 13 11 473 4 474 6.33e-66 219
Msa1425600 MtrunA17_Chr6g0454121 28.457 499 304 11 6 474 5 480 6.54e-65 217
Msa1425600 MtrunA17_Chr3g0118711 29.779 497 297 15 6 473 8 481 7.79e-65 217
Msa1425600 MtrunA17_Chr6g0454351 28.947 494 280 13 13 474 12 466 9.09e-65 216
Msa1425600 MtrunA17_Chr3g0118661 31.753 485 288 16 13 472 13 479 2.95e-64 215
Msa1425600 MtrunA17_Chr6g0454131 28.884 502 304 11 6 477 5 483 6.56e-64 214
Msa1425600 MtrunA17_Chr3g0112771 31.027 477 275 13 14 473 13 452 1.88e-63 213
Msa1425600 MtrunA17_Chr7g0218821 28.602 465 304 7 13 470 5 448 2.44e-63 212
Msa1425600 MtrunA17_Chr7g0218811 28.726 463 295 8 13 470 15 447 1.05e-62 210
Msa1425600 MtrunA17_Chr7g0218841 28.694 467 288 10 13 469 6 437 1.57e-60 204
Msa1425600 MtrunA17_Chr7g0218831 29.004 462 292 9 13 469 6 436 1.95e-60 204
Msa1425600 MtrunA17_Chr3g0118771 28.195 493 298 13 13 473 21 489 5.35e-60 204
Msa1425600 MtrunA17_Chr3g0118701 27.490 502 310 13 3 473 5 483 1.09e-59 203
Msa1425600 MtrunA17_Chr5g0412111 30.608 477 294 13 13 472 5 461 1.17e-59 203
Msa1425600 MtrunA17_Chr6g0454271 33.677 291 183 4 188 474 4 288 4.69e-59 196
Msa1425600 MtrunA17_Chr7g0218791 30.000 470 285 17 13 470 5 442 6.44e-59 200
Msa1425600 MtrunA17_Chr6g0454221 40.426 235 129 4 242 471 1 229 5.04e-58 194
Msa1425600 MtrunA17_Chr6g0454251 31.078 399 239 10 13 386 7 394 8.42e-58 196
Msa1425600 MtrunA17_Chr4g0044511 30.266 489 292 16 11 472 38 504 1.65e-57 198
Msa1425600 MtrunA17_Chr7g0243631 28.571 504 310 15 1 472 1 486 3.15e-57 197
Msa1425600 MtrunA17_Chr5g0426401 33.557 298 188 3 182 474 20 312 9.54e-57 191
Msa1425600 MtrunA17_Chr5g0412101 31.697 489 287 18 7 472 6 470 4.56e-55 191
Msa1425600 MtrunA17_Chr5g0431441 29.363 487 280 16 13 473 18 466 1.29e-54 189
Msa1425600 MtrunA17_Chr3g0118721 32.646 291 181 6 191 473 7 290 2.43e-53 181
Msa1425600 MtrunA17_Chr5g0419771 29.622 503 289 17 12 473 35 513 7.24e-53 186
Msa1425600 MtrunA17_Chr7g0265141 29.065 492 304 15 13 473 9 486 1.09e-52 185
Msa1425600 MtrunA17_Chr3g0112761 29.449 472 293 15 13 473 8 450 1.14e-52 184
Msa1425600 MtrunA17_Chr5g0412131 31.092 476 294 16 13 472 12 469 1.35e-52 184
Msa1425600 MtrunA17_Chr7g0243871 28.571 483 307 15 11 472 7 472 1.47e-52 184
Msa1425600 MtrunA17_Chr8g0366391 28.488 516 297 19 5 480 2 485 4.62e-52 183
Msa1425600 MtrunA17_Chr3g0106231 28.211 475 295 14 13 477 18 456 1.78e-51 181
Msa1425600 MtrunA17_Chr7g0243861 28.630 489 309 15 11 472 12 487 3.57e-51 181
Msa1425600 MtrunA17_Chr4g0032331 28.998 469 281 16 22 473 17 450 5.45e-51 179
Msa1425600 MtrunA17_Chr7g0232311 33.239 355 202 10 135 469 121 460 5.51e-51 180
Msa1425600 MtrunA17_Chr5g0431401 27.883 477 289 14 13 472 10 448 1.82e-50 178
Msa1425600 MtrunA17_Chr6g0462571 30.682 352 212 10 135 470 124 459 3.18e-50 178
Msa1425600 MtrunA17_Chr6g0462531 28.571 469 294 14 14 461 5 453 6.14e-50 177
Msa1425600 MtrunA17_Chr6g0454171 34.545 275 150 6 208 474 59 311 7.10e-50 172
Msa1425600 MtrunA17_Chr5g0431361 28.390 472 296 15 13 472 12 453 7.98e-50 176
Msa1425600 MtrunA17_Chr8g0336651 30.498 482 286 15 12 467 780 1238 1.04e-49 183
Msa1425600 MtrunA17_Chr8g0336651 27.083 480 305 13 12 469 5 461 3.24e-43 164
Msa1425600 MtrunA17_Chr8g0336651 36.226 265 133 7 212 468 534 770 1.09e-40 156
Msa1425600 MtrunA17_Chr8g0336691 34.232 371 202 11 123 468 1022 1375 1.14e-49 182
Msa1425600 MtrunA17_Chr8g0336691 29.339 484 289 17 12 468 12 469 1.30e-46 174
Msa1425600 MtrunA17_Chr8g0336691 38.645 251 125 7 223 468 682 908 1.53e-42 162
Msa1425600 MtrunA17_Chr8g0336741 30.488 492 273 17 11 468 11 467 1.48e-49 176
Msa1425600 MtrunA17_Chr7g0250021 33.642 324 185 10 12 326 11 313 1.83e-49 172
Msa1425600 MtrunA17_Chr7g0275681 28.400 500 289 18 13 473 12 481 1.99e-49 176
Msa1425600 MtrunA17_Chr5g0431421 28.151 476 291 14 13 473 10 449 3.56e-49 174
Msa1425600 MtrunA17_Chr6g0462551 26.446 484 289 13 21 470 12 462 5.86e-49 174
Msa1425600 MtrunA17_Chr4g0066151 28.221 489 297 12 14 474 19 481 7.19e-49 174
Msa1425600 MtrunA17_Chr7g0243931 27.403 489 315 15 11 472 15 490 7.41e-49 175
Msa1425600 MtrunA17_Chr7g0232331 27.755 490 295 19 13 472 6 466 1.59e-48 173
Msa1425600 MtrunA17_Chr7g0243771 28.340 494 306 16 8 472 1 475 1.69e-48 174
Msa1425600 MtrunA17_Chr4g0066221 28.427 496 311 13 4 472 2 480 1.82e-48 173
Msa1425600 MtrunA17_Chr8g0347281 33.152 368 206 12 120 465 116 465 4.82e-48 172
Msa1425600 MtrunA17_Chr5g0442561 26.613 496 302 14 13 473 5 473 5.15e-48 172
Msa1425600 MtrunA17_Chr8g0336731 30.623 369 218 8 127 469 131 487 5.44e-48 172
Msa1425600 MtrunA17_Chr6g0462541 26.947 475 311 12 14 470 5 461 8.96e-48 171
Msa1425600 MtrunA17_Chr7g0243951 28.370 497 313 15 4 472 2 483 1.18e-47 171
Msa1425600 MtrunA17_Chr5g0431371 28.118 473 293 14 13 472 10 448 1.23e-47 170
Msa1425600 MtrunA17_Chr8g0339461 30.585 376 221 12 123 472 110 471 1.32e-47 171
Msa1425600 MtrunA17_Chr7g0232401 29.834 362 228 7 123 468 112 463 1.69e-47 171
Msa1425600 MtrunA17_Chr7g0243801 28.163 490 306 16 11 472 5 476 1.70e-47 171
Msa1425600 MtrunA17_Chr1g0153451 29.745 353 213 9 137 469 123 460 3.25e-47 169
Msa1425600 MtrunA17_Chr8g0373301 30.000 370 218 10 123 469 112 463 4.41e-47 169
Msa1425600 MtrunA17_Chr2g0307961 27.869 488 320 11 1 474 1 470 4.60e-47 169
Msa1425600 MtrunA17_Chr4g0014061 29.293 495 293 19 6 470 3 470 6.34e-47 169
Msa1425600 MtrunA17_Chr8g0347271 29.234 496 286 16 1 465 5 466 9.04e-47 169
Msa1425600 MtrunA17_Chr7g0243681 27.108 498 300 17 11 472 9 479 9.40e-47 169
Msa1425600 MtrunA17_Chr7g0265041 28.455 492 308 14 13 473 11 489 1.14e-46 169
Msa1425600 MtrunA17_Chr4g0066261 28.514 498 309 16 4 472 2 481 1.23e-46 168
Msa1425600 MtrunA17_Chr7g0232391 27.310 487 300 12 12 471 5 464 2.06e-46 167
Msa1425600 MtrunA17_Chr4g0011051 28.797 507 298 20 8 473 4 488 2.23e-46 168
Msa1425600 MtrunA17_Chr4g0044501 28.041 485 307 17 12 472 9 475 2.39e-46 167
Msa1425600 MtrunA17_Chr7g0232411 32.508 323 181 9 169 471 159 464 2.43e-46 167
Msa1425600 MtrunA17_Chr8g0361371 34.768 302 164 7 188 469 179 467 2.71e-46 167
Msa1425600 MtrunA17_Chr5g0442581 26.453 499 307 15 14 476 6 480 3.40e-46 168
Msa1425600 MtrunA17_Chr7g0243781 25.620 484 323 14 11 472 7 475 4.15e-46 167
Msa1425600 MtrunA17_Chr8g0355011 28.453 362 205 5 123 474 46 363 4.24e-46 164
Msa1425600 MtrunA17_Chr6g0459311 31.507 365 214 11 122 465 115 464 4.53e-46 167
Msa1425600 MtrunA17_Chr4g0072761 28.330 473 293 13 12 472 14 452 5.10e-46 166
Msa1425600 MtrunA17_Chr7g0275511 27.419 496 299 15 1 465 3 468 5.69e-46 166
Msa1425600 MtrunA17_Chr4g0060511 25.904 498 314 15 11 472 9 487 5.92e-46 167
Msa1425600 MtrunA17_Chr7g0235051 26.860 484 291 14 11 471 9 452 2.06e-45 165
Msa1425600 MtrunA17_Chr5g0432731 32.566 304 184 8 179 473 6 297 2.16e-45 160
Msa1425600 MtrunA17_Chr7g0232341 26.380 489 303 17 13 472 6 466 2.40e-45 164
Msa1425600 MtrunA17_Chr7g0265051 28.405 514 298 23 1 473 1 485 2.49e-45 165
Msa1425600 MtrunA17_Chr8g0334851 30.871 379 200 13 120 463 109 460 3.49e-45 164
Msa1425600 MtrunA17_Chr7g0265151 27.455 499 307 15 10 473 6 484 3.79e-45 164
Msa1425600 MtrunA17_Chr4g0042891 28.513 491 288 18 12 471 6 464 4.25e-45 164
Msa1425600 MtrunA17_Chr8g0339451 30.563 373 225 10 123 472 102 463 4.66e-45 164
Msa1425600 MtrunA17_Chr5g0448521 28.316 392 229 10 116 473 95 468 1.33e-44 162
Msa1425600 MtrunA17_Chr8g0374931 27.565 497 315 12 4 472 2 481 1.35e-44 163
Msa1425600 MtrunA17_Chr8g0339441 40.376 213 111 4 276 472 217 429 1.49e-44 162
Msa1425600 MtrunA17_Chr3g0118751 26.392 485 288 13 13 473 6 445 2.56e-44 161
Msa1425600 MtrunA17_Chr3g0106251 33.962 265 155 5 219 477 48 298 2.58e-44 158
Msa1425600 MtrunA17_Chr7g0265101 28.762 525 305 23 1 480 1 501 2.92e-44 162
Msa1425600 MtrunA17_Chr6g0463851 26.465 495 324 12 4 472 2 482 6.07e-44 161
Msa1425600 MtrunA17_Chr1g0179901 27.621 496 309 17 12 473 15 494 6.67e-44 161
Msa1425600 MtrunA17_Chr4g0066281 28.364 483 289 14 16 472 15 466 7.75e-44 160
Msa1425600 MtrunA17_Chr8g0335161 33.333 309 179 8 173 465 162 459 1.04e-43 160
Msa1425600 MtrunA17_Chr6g0486251 30.357 392 240 11 92 465 81 457 1.18e-43 160
Msa1425600 MtrunA17_Chr6g0486201 30.357 392 240 11 92 465 81 457 1.18e-43 160
Msa1425600 MtrunA17_Chr2g0294931 26.761 497 319 12 4 472 2 481 1.19e-43 160
Msa1425600 MtrunA17_Chr8g0339601 32.381 315 180 8 180 472 27 330 1.83e-43 156
Msa1425600 MtrunA17_Chr5g0429711 29.703 404 237 14 89 472 85 461 1.84e-43 159
Msa1425600 MtrunA17_Chr6g0462521 28.919 370 218 12 113 461 94 439 2.35e-43 159
Msa1425600 MtrunA17_Chr5g0440421 28.655 513 304 23 3 473 2 494 2.90e-43 159
Msa1425600 MtrunA17_Chr2g0329111 29.470 509 285 22 14 480 7 483 3.66e-43 159
Msa1425600 MtrunA17_Chr8g0374901 27.254 488 300 14 16 472 15 478 3.89e-43 159
Msa1425600 MtrunA17_Chr4g0066201 27.419 496 304 15 3 472 9 474 5.31e-43 158
Msa1425600 MtrunA17_Chr8g0334831 34.839 310 162 7 188 469 178 475 6.30e-43 158
Msa1425600 MtrunA17_Chr5g0448551 27.045 440 280 14 14 442 8 417 1.26e-42 157
Msa1425600 MtrunA17_Chr6g0463861 29.708 377 217 11 126 472 115 473 1.41e-42 157
Msa1425600 MtrunA17_Chr2g0294921 26.572 493 325 11 4 472 151 630 1.52e-42 159
Msa1425600 MtrunA17_Chr7g0218311 26.962 497 309 13 7 472 10 483 2.04e-42 157
Msa1425600 MtrunA17_Chr3g0079731 28.321 399 236 13 109 469 91 477 2.19e-42 157
Msa1425600 MtrunA17_Chr8g0339631 33.441 311 171 11 180 468 168 464 2.21e-42 157
Msa1425600 MtrunA17_Chr4g0072771 26.526 475 304 13 11 472 23 465 2.21e-42 156
Msa1425600 MtrunA17_Chr5g0419761 27.183 504 300 16 12 473 8 486 2.38e-42 157
Msa1425600 MtrunA17_Chr4g0044481 30.073 409 236 13 13 409 27 397 2.41e-42 155
Msa1425600 MtrunA17_Chr1g0153461 36.667 210 118 3 276 471 3 211 2.82e-42 149
Msa1425600 MtrunA17_Chr5g0442601 26.923 390 233 12 117 473 506 876 4.40e-42 160
Msa1425600 MtrunA17_Chr5g0442601 27.687 307 167 9 123 409 62 333 2.58e-28 119
Msa1425600 MtrunA17_Chr7g0243851 27.160 486 278 15 11 472 9 442 6.88e-42 155
Msa1425600 MtrunA17_Chr4g0066171 26.176 489 321 11 2 472 10 476 1.01e-41 155
Msa1425600 MtrunA17_Chr5g0442511 31.373 306 173 8 193 472 199 493 1.39e-41 155
Msa1425600 MtrunA17_Chr4g0066131 25.904 498 314 13 1 470 2 472 2.34e-41 154
Msa1425600 MtrunA17_Chr7g0265111 28.112 498 309 20 11 475 37 518 2.37e-41 155
Msa1425600 MtrunA17_Chr5g0410941 26.157 497 318 13 4 472 14 489 2.79e-41 154
Msa1425600 MtrunA17_Chr8g0335141 34.783 276 155 6 212 472 203 468 4.20e-41 153
Msa1425600 MtrunA17_Chr5g0442491 24.644 491 318 13 14 473 6 475 1.51e-40 152
Msa1425600 MtrunA17_Chr5g0428081 26.708 483 311 11 16 472 14 479 1.67e-40 152
Msa1425600 MtrunA17_Chr5g0442521 25.806 496 301 16 14 470 6 473 1.77e-40 151
Msa1425600 MtrunA17_Chr8g0374971 26.033 484 317 11 14 472 13 480 2.61e-40 151
Msa1425600 MtrunA17_Chr5g0442541 25.352 497 300 15 13 473 5 466 2.64e-40 150
Msa1425600 MtrunA17_Chr7g0243761 26.681 476 303 13 12 472 10 454 2.93e-40 150
Msa1425600 MtrunA17_Chr4g0042931 28.310 491 283 19 12 469 6 460 3.68e-40 150
Msa1425600 MtrunA17_Chr8g0334861 29.867 375 221 12 120 469 103 460 3.98e-40 150
Msa1425600 MtrunA17_Chr4g0044521 31.044 364 222 12 126 469 109 463 7.14e-40 149
Msa1425600 MtrunA17_Chr1g0173121 24.390 492 305 17 9 472 10 462 7.35e-40 149
Msa1425600 MtrunA17_Chr1g0159551 31.915 235 143 5 248 472 232 459 7.97e-40 149
Msa1425600 MtrunA17_Chr6g0449931 29.945 364 219 9 120 461 107 456 1.53e-39 149
Msa1425600 MtrunA17_Chr5g0401851 25.800 500 321 14 5 472 2 483 3.78e-39 148
Msa1425600 MtrunA17_Chr2g0302961 26.423 492 303 17 11 472 3 465 4.78e-39 147
Msa1425600 MtrunA17_Chr5g0420801 28.481 474 297 14 13 469 7 455 5.18e-39 147
Msa1425600 MtrunA17_Chr2g0302991 27.073 410 249 13 91 472 75 462 1.78e-38 145
Msa1425600 MtrunA17_Chr6g0454371 36.364 176 108 1 299 474 1 172 3.18e-38 137
Msa1425600 MtrunA17_Chr7g0243711 32.184 261 158 6 226 472 61 316 1.80e-37 140
Msa1425600 MtrunA17_Chr1g0207881 32.624 282 157 9 12 289 7 259 4.57e-37 140
Msa1425600 MtrunA17_Chr1g0207881 47.761 134 68 1 341 472 251 384 1.77e-35 136
Msa1425600 MtrunA17_Chr2g0294941 28.415 366 229 9 125 466 17 373 9.08e-37 139
Msa1425600 MtrunA17_Chr8g0361411 25.103 486 304 14 10 472 5 453 1.21e-36 140
Msa1425600 MtrunA17_Chr1g0207911 36.364 242 147 5 12 250 7 244 1.49e-36 135
Msa1425600 MtrunA17_Chr1g0165701 26.719 509 310 21 1 472 1 483 1.69e-36 140
Msa1425600 MtrunA17_Chr8g0350881 25.562 489 317 12 12 472 11 480 3.57e-36 139
Msa1425600 MtrunA17_Chr8g0382021 33.493 209 126 4 277 472 280 488 3.57e-36 139
Msa1425600 MtrunA17_Chr8g0374941 24.696 494 307 14 16 472 952 1417 4.12e-36 142
Msa1425600 MtrunA17_Chr8g0374941 26.337 486 297 15 4 454 467 926 7.45e-36 142
Msa1425600 MtrunA17_Chr8g0374941 25.207 484 313 15 4 458 2 465 8.41e-36 142
Msa1425600 MtrunA17_Chr5g0429681 35.714 266 141 10 221 470 246 497 5.95e-36 139
Msa1425600 MtrunA17_Chr6g0482061 26.233 507 309 17 1 471 1 478 6.61e-36 139
Msa1425600 MtrunA17_Chr8g0369341 26.042 480 315 12 11 469 5 465 9.81e-35 135
Msa1425600 MtrunA17_Chr8g0355221 27.882 373 232 12 126 472 125 486 1.30e-34 135
Msa1425600 MtrunA17_Chr5g0403641 23.960 505 308 16 6 480 52 510 3.64e-34 134
Msa1425600 MtrunA17_Chr5g0431431 32.692 260 147 6 163 417 94 330 9.47e-34 130
Msa1425600 MtrunA17_Chr7g0243611 34.956 226 139 4 192 409 46 271 9.47e-34 129
Msa1425600 MtrunA17_Chr7g0243811 26.667 420 265 15 25 428 1 393 1.37e-33 130
Msa1425600 MtrunA17_Chr7g0243911 33.854 192 114 3 279 457 24 215 2.21e-33 125
Msa1425600 MtrunA17_Chr5g0416741 24.082 490 325 13 12 472 12 483 2.55e-33 132
Msa1425600 MtrunA17_Chr5g0416821 24.187 492 311 16 12 472 13 473 3.14e-33 131
Msa1425600 MtrunA17_Chr8g0370941 26.157 497 292 20 13 461 8 477 1.24e-32 130
Msa1425600 MtrunA17_Chr6g0463891 26.626 492 312 17 12 472 11 484 1.88e-32 129
Msa1425600 MtrunA17_Chr3g0079711 34.973 183 103 4 303 469 3 185 2.70e-31 119
Msa1425600 MtrunA17_Chr6g0454231 30.078 256 130 7 223 473 8 219 3.87e-31 125
Msa1425600 MtrunA17_Chr8g0336261 39.416 137 79 1 299 435 1 133 9.91e-31 115
Msa1425600 MtrunA17_Chr7g0241801 30.686 277 161 11 210 476 176 431 3.68e-30 122
Msa1425600 MtrunA17_Chr6g0466831 25.000 500 298 18 12 481 17 469 5.99e-30 122
Msa1425600 MtrunA17_Chr7g0241781 29.811 265 160 10 222 481 191 434 9.63e-30 120
Msa1425600 MtrunA17_Chr6g0466841 24.400 500 301 18 12 481 17 469 1.97e-29 120
Msa1425600 MtrunA17_Chr4g0069611 25.708 459 299 16 3 447 6 436 3.53e-29 119
Msa1425600 MtrunA17_Chr4g0029151 25.828 453 275 18 3 432 10 424 1.11e-27 115
Msa1425600 MtrunA17_Chr8g0367221 26.782 463 283 15 12 448 11 443 2.37e-27 116
Msa1425600 MtrunA17_Chr8g0367221 25.806 465 286 13 12 448 797 1230 6.10e-27 115
Msa1425600 MtrunA17_Chr8g0367221 35.429 175 108 4 278 448 1547 1720 5.55e-25 109
Msa1425600 MtrunA17_Chr7g0232351 26.601 406 235 16 12 386 5 378 8.13e-27 111
Msa1425600 MtrunA17_Chr2g0302851 27.757 263 175 8 223 481 216 467 8.66e-27 112
Msa1425600 MtrunA17_Chr2g0278721 24.686 478 291 16 5 447 509 952 9.52e-27 114
Msa1425600 MtrunA17_Chr2g0278721 25.478 471 290 17 3 447 6 441 3.36e-26 112
Msa1425600 MtrunA17_Chr2g0278741 32.143 224 137 7 230 447 309 523 2.56e-26 112
Msa1425600 MtrunA17_Chr8g0337381 41.176 119 68 1 350 468 5 121 6.23e-26 102
Msa1425600 MtrunA17_Chr6g0453981 31.401 207 128 5 156 350 27 231 1.39e-25 104
Msa1425600 MtrunA17_Chr6g0464091 24.449 499 309 19 12 481 17 476 2.46e-25 108
Msa1425600 MtrunA17_Chr5g0409591 24.109 477 275 16 14 435 5 449 5.50e-25 107
Msa1425600 MtrunA17_Chr7g0231631 28.302 265 154 7 226 472 13 259 2.20e-24 102
Msa1425600 MtrunA17_Chr8g0357361 36.126 191 113 6 223 409 64 249 4.97e-23 98.6
Msa1425600 MtrunA17_Chr8g0336251 23.457 486 321 15 3 469 2 455 7.37e-23 101
Msa1425600 MtrunA17_Chr8g0336321 23.457 486 321 15 3 469 2 455 8.79e-23 100
Msa1425600 MtrunA17_Chr4g0039881 28.384 229 153 7 224 448 193 414 1.28e-22 100
Msa1425600 MtrunA17_Chr4g0029131 30.435 230 138 7 212 432 200 416 4.78e-22 99.8
Msa1425600 MtrunA17_Chr3g0092031 29.825 171 115 4 279 447 6 173 3.38e-21 91.7
Msa1425600 MtrunA17_Chr4g0066141 33.333 162 90 5 329 472 190 351 3.96e-21 94.7
Msa1425600 MtrunA17_Chr5g0427571 28.704 216 147 5 221 430 43 257 2.94e-20 91.3
Msa1425600 MtrunA17_Chr6g0453941 28.000 200 134 5 147 338 75 272 1.44e-18 85.9
Msa1425600 MtrunA17_Chr6g0454111 28.571 182 120 4 146 319 4 183 1.86e-18 83.2
Msa1425600 MtrunA17_Chr1g0196851 26.809 235 149 7 212 436 240 461 4.17e-18 87.0
Msa1425600 MtrunA17_Chr4g0040711 29.032 217 137 8 230 441 220 424 1.85e-17 84.7
Msa1425600 MtrunA17_Chr2g0283041 29.016 193 123 5 271 459 250 432 3.45e-17 84.0
Msa1425600 MtrunA17_Chr4g0040691 28.161 174 121 3 279 448 261 434 9.98e-17 82.4
Msa1425600 MtrunA17_Chr2g0319761 23.881 469 288 21 10 448 5 434 1.44e-15 79.0
Msa1425600 MtrunA17_Chr8g0377911 30.612 147 86 4 14 157 8 141 6.42e-15 72.4
Msa1425600 MtrunA17_Chr7g0243731 37.500 80 50 0 339 418 1 80 6.54e-15 69.7
Msa1425600 MtrunA17_Chr2g0319751 28.509 228 140 10 230 450 697 908 1.43e-13 73.6
Msa1425600 MtrunA17_Chr2g0319751 27.273 220 115 10 230 442 220 401 4.39e-11 65.5
Msa1425600 MtrunA17_Chr7g0243721 35.294 119 74 2 213 328 23 141 2.30e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425600 AT2G23250.1 44.902 461 230 9 16 475 1 438 9.08e-135 396
Msa1425600 AT2G23260.1 44.068 472 234 10 11 475 8 456 1.93e-134 396
Msa1425600 AT4G15490.1 40.710 479 255 9 13 477 8 471 1.82e-122 366
Msa1425600 AT3G21560.1 40.638 470 260 9 13 472 12 472 3.27e-121 363
Msa1425600 AT4G15480.1 39.400 467 271 7 12 472 18 478 1.60e-119 359
Msa1425600 AT4G15500.1 40.860 465 261 5 13 473 9 463 3.17e-118 355
Msa1425600 AT1G05680.1 36.069 463 271 8 13 469 6 449 5.37e-104 318
Msa1425600 AT1G05675.1 37.446 462 266 9 13 469 6 449 1.78e-103 317
Msa1425600 AT4G15550.1 37.263 475 267 11 13 471 13 472 6.66e-98 303
Msa1425600 AT2G31750.1 35.805 472 276 11 9 473 4 455 2.34e-97 301
Msa1425600 AT2G31750.2 35.865 474 277 11 9 475 4 457 5.42e-97 301
Msa1425600 AT4G14090.1 37.313 469 257 14 13 471 13 454 3.06e-96 298
Msa1425600 AT2G31790.1 35.837 466 270 10 13 469 8 453 3.70e-96 298
Msa1425600 AT2G43820.1 37.100 469 257 12 13 472 7 446 1.98e-94 293
Msa1425600 AT2G43840.2 34.110 472 271 13 13 474 7 448 2.91e-93 290
Msa1425600 AT2G43840.1 34.110 472 271 13 13 474 7 448 4.17e-92 287
Msa1425600 AT1G05530.1 34.874 476 270 12 13 473 5 455 9.00e-91 284
Msa1425600 AT1G05560.1 34.025 482 277 13 13 480 5 459 4.47e-89 280
Msa1425600 AT1G05560.2 34.025 482 277 13 13 480 55 509 1.37e-88 280
Msa1425600 AT1G24100.1 34.304 481 278 14 5 472 3 458 9.45e-83 263
Msa1425600 AT1G22380.1 30.849 483 306 10 13 477 13 485 5.13e-76 247
Msa1425600 AT1G22340.1 31.733 479 302 11 13 474 13 483 1.43e-75 246
Msa1425600 AT1G22360.1 30.769 481 305 11 13 475 10 480 3.47e-74 242
Msa1425600 AT1G22400.1 30.977 481 305 9 13 475 13 484 1.01e-72 238
Msa1425600 AT2G28080.1 30.297 472 299 13 22 481 27 480 3.96e-70 231
Msa1425600 AT2G36970.1 29.175 473 310 11 13 472 10 470 1.79e-69 229
Msa1425600 AT1G78270.1 30.266 489 293 12 13 473 13 481 1.29e-68 227
Msa1425600 AT1G22360.2 29.730 481 298 11 13 475 10 468 1.36e-68 227
Msa1425600 AT1G22370.2 29.630 486 323 9 1 475 1 478 1.45e-67 224
Msa1425600 AT2G23210.1 41.958 286 143 7 11 292 8 274 1.01e-66 216
Msa1425600 AT5G59590.1 31.211 487 278 16 4 472 2 449 1.80e-63 213
Msa1425600 AT5G59580.1 30.753 478 274 16 13 472 9 447 1.00e-62 211
Msa1425600 AT2G36770.1 28.200 500 321 15 1 473 1 489 2.21e-59 203
Msa1425600 AT3G46680.1 28.866 485 284 14 7 470 3 447 4.03e-57 196
Msa1425600 AT3G46660.1 30.085 472 280 13 14 469 15 452 5.31e-57 196
Msa1425600 AT2G36780.1 27.613 507 329 15 1 480 1 496 2.31e-56 195
Msa1425600 AT5G38010.1 30.737 475 277 13 13 469 10 450 6.86e-56 193
Msa1425600 AT5G05870.1 29.792 480 292 11 11 474 6 456 2.64e-55 191
Msa1425600 AT2G15480.1 28.000 500 307 17 5 472 2 480 2.76e-55 192
Msa1425600 AT4G34131.1 29.897 485 302 15 11 471 8 478 4.21e-55 191
Msa1425600 AT3G46670.1 29.958 474 278 15 13 469 9 445 2.24e-54 189
Msa1425600 AT5G38040.1 28.785 469 274 14 21 469 18 446 2.25e-54 189
Msa1425600 AT2G15490.3 29.175 497 297 17 9 472 3 477 3.61e-54 189
Msa1425600 AT3G46690.1 30.297 472 280 15 13 469 9 446 4.18e-54 188
Msa1425600 AT4G34138.1 30.505 495 286 16 11 472 9 478 5.99e-54 189
Msa1425600 AT2G15480.2 27.843 510 305 17 5 472 2 490 8.49e-54 188
Msa1425600 AT4G01070.1 29.832 476 288 17 13 465 8 460 1.32e-53 187
Msa1425600 AT2G36750.1 29.058 499 306 19 6 473 3 484 1.43e-53 187
Msa1425600 AT2G36800.1 28.906 512 301 19 1 473 1 488 1.82e-53 187
Msa1425600 AT2G15490.1 28.800 500 298 17 9 472 3 480 3.70e-53 186
Msa1425600 AT2G30150.2 28.753 473 291 13 13 472 13 452 1.52e-52 184
Msa1425600 AT3G02100.1 26.955 486 310 14 1 470 1 457 1.53e-52 184
Msa1425600 AT2G36790.1 29.283 502 305 18 12 481 12 495 1.61e-52 185
Msa1425600 AT2G36760.1 26.800 500 328 14 1 473 1 489 3.28e-52 184
Msa1425600 AT1G22370.1 34.114 299 188 4 182 475 14 308 6.02e-52 178
Msa1425600 AT3G46650.1 28.964 473 281 14 5 468 2 428 9.96e-52 181
Msa1425600 AT3G53160.1 29.800 500 290 18 12 473 7 483 1.11e-51 182
Msa1425600 AT4G34135.1 29.435 496 291 13 11 471 9 480 2.58e-51 181
Msa1425600 AT2G30150.1 29.032 465 284 14 21 472 5 436 2.91e-51 180
Msa1425600 AT3G11340.1 28.008 482 297 15 4 473 2 445 5.07e-51 180
Msa1425600 AT2G30140.2 28.092 477 287 14 13 472 13 450 1.09e-50 179
Msa1425600 AT2G30140.1 28.033 478 287 14 13 472 13 451 1.76e-50 178
Msa1425600 AT3G16520.3 32.070 343 208 9 131 462 121 449 3.06e-50 178
Msa1425600 AT3G46700.1 27.859 481 281 16 13 472 9 444 8.17e-50 176
Msa1425600 AT5G05880.1 28.421 475 293 14 12 472 7 448 9.44e-50 176
Msa1425600 AT3G16520.1 32.653 343 204 10 131 458 121 451 1.43e-49 176
Msa1425600 AT3G46720.1 28.908 467 284 12 13 469 9 437 4.34e-49 174
Msa1425600 AT3G16520.2 33.133 332 195 10 131 447 121 440 1.45e-48 173
Msa1425600 AT4G15280.2 26.253 499 314 14 7 473 30 506 8.00e-48 172
Msa1425600 AT4G15280.1 26.061 495 312 14 11 473 2 474 1.71e-47 171
Msa1425600 AT5G05860.1 27.311 476 299 13 12 474 8 449 1.21e-46 168
Msa1425600 AT1G30530.1 27.350 468 305 12 13 473 12 451 2.80e-46 167
Msa1425600 AT5G17050.1 27.542 472 305 12 13 473 12 457 6.98e-46 166
Msa1425600 AT3G22250.1 26.737 475 277 15 7 445 2 441 1.44e-45 165
Msa1425600 AT3G55700.1 27.623 467 289 18 23 473 18 451 2.33e-45 165
Msa1425600 AT3G21790.1 29.610 385 222 9 120 472 111 478 2.82e-45 165
Msa1425600 AT1G07260.1 27.016 496 308 16 8 473 1 472 4.11e-45 164
Msa1425600 AT5G05900.1 27.673 477 293 14 12 472 7 447 4.28e-45 164
Msa1425600 AT5G17040.1 25.855 468 308 11 13 473 5 440 2.08e-44 162
Msa1425600 AT3G55710.1 26.531 490 304 17 4 473 2 455 1.10e-43 160
Msa1425600 AT1G01420.1 28.571 476 293 15 13 465 8 459 1.67e-43 160
Msa1425600 AT1G01420.2 28.571 476 293 15 13 465 11 462 1.75e-43 160
Msa1425600 AT1G73880.1 27.328 494 306 18 3 473 4 467 2.20e-43 159
Msa1425600 AT1G07250.1 29.440 411 254 15 83 473 79 473 3.18e-43 159
Msa1425600 AT3G21800.1 24.641 487 322 11 14 472 6 475 2.67e-42 157
Msa1425600 AT2G29740.1 26.556 482 317 16 11 470 6 472 1.01e-41 155
Msa1425600 AT2G16890.2 27.651 481 311 15 13 475 9 470 1.98e-41 154
Msa1425600 AT1G10400.1 25.673 483 311 15 11 471 5 461 3.85e-41 153
Msa1425600 AT5G05890.1 26.316 475 307 12 12 472 7 452 8.44e-41 152
Msa1425600 AT5G03490.1 28.421 475 292 16 13 471 19 461 9.80e-41 152
Msa1425600 AT5G17040.2 31.058 293 188 6 182 473 59 338 1.85e-40 149
Msa1425600 AT4G15260.1 27.717 368 227 8 131 473 2 355 3.22e-40 148
Msa1425600 AT1G01390.1 35.206 267 141 5 218 464 205 459 7.92e-40 150
Msa1425600 AT5G66690.1 26.824 507 287 22 13 473 7 475 8.72e-40 150
Msa1425600 AT1G01390.2 35.206 267 141 5 218 464 222 476 9.18e-40 150
Msa1425600 AT5G14860.1 26.735 490 313 18 13 475 8 478 1.60e-39 149
Msa1425600 AT3G21750.1 28.385 384 226 12 122 473 103 469 2.20e-39 149
Msa1425600 AT3G21780.1 24.435 487 323 10 11 472 2 468 6.13e-39 147
Msa1425600 AT3G53150.1 25.819 519 321 15 1 473 10 510 7.26e-39 148
Msa1425600 AT5G26310.1 25.494 506 284 20 13 471 7 466 1.76e-38 146
Msa1425600 AT3G50740.1 26.946 501 289 20 13 471 7 472 1.97e-38 146
Msa1425600 AT2G26480.1 27.329 483 287 16 13 474 8 447 2.79e-38 145
Msa1425600 AT3G21760.1 26.632 383 241 10 117 472 111 480 4.68e-38 145
Msa1425600 AT2G29750.1 25.466 483 326 16 11 473 6 474 3.22e-37 143
Msa1425600 AT5G17030.1 26.483 472 309 13 13 473 12 456 4.53e-37 142
Msa1425600 AT2G29730.1 27.077 325 202 10 158 473 165 463 1.90e-36 140
Msa1425600 AT5G37950.1 28.075 374 225 11 28 387 1 344 3.40e-36 137
Msa1425600 AT2G29710.1 26.543 324 206 9 158 473 164 463 1.52e-35 138
Msa1425600 AT5G12890.1 24.554 505 319 14 12 479 9 488 9.09e-35 136
Msa1425600 AT1G07240.1 29.831 295 185 9 193 473 190 476 1.01e-34 135
Msa1425600 AT4G36770.1 26.403 481 282 15 11 455 2 446 1.47e-34 135
Msa1425600 AT5G37950.2 27.493 371 225 11 28 387 1 338 2.21e-34 132
Msa1425600 AT1G06000.1 27.033 492 280 17 1 472 1 433 3.00e-34 134
Msa1425600 AT2G18560.1 30.745 322 176 10 173 465 66 369 3.50e-34 132
Msa1425600 AT2G16890.3 27.021 433 280 14 13 428 9 422 2.13e-33 131
Msa1425600 AT1G51210.1 25.561 446 287 14 8 442 17 428 3.15e-30 122
Msa1425600 AT2G18570.1 23.750 480 306 17 13 461 5 455 4.28e-29 119
Msa1425600 AT5G65550.1 30.531 226 142 8 223 444 220 434 8.59e-29 119
Msa1425600 AT4G34135.2 25.882 340 203 9 11 323 9 326 1.98e-22 98.6
Msa1425600 AT4G27570.1 22.951 488 301 17 11 472 5 443 6.49e-22 98.6
Msa1425600 AT2G22590.1 27.953 254 164 7 223 470 224 464 1.59e-21 97.4
Msa1425600 AT5G49690.1 27.059 255 159 9 223 473 217 448 3.26e-21 96.7
Msa1425600 AT3G29630.1 22.822 482 324 15 11 481 4 448 1.84e-20 94.4
Msa1425600 AT5G53990.1 30.387 181 120 4 273 448 238 417 1.62e-19 91.3
Msa1425600 AT3G29630.2 28.505 214 143 6 273 481 214 422 2.23e-19 90.5
Msa1425600 AT4G27560.1 22.129 479 316 16 11 472 5 443 4.27e-19 90.1
Msa1425600 AT5G54010.1 21.396 444 285 15 11 432 4 405 6.72e-19 89.4
Msa1425600 AT2G22930.1 21.545 492 304 17 8 472 1 437 4.89e-18 86.7
Msa1425600 AT1G64910.1 21.992 482 314 16 12 475 5 442 1.41e-17 85.5
Msa1425600 AT1G50580.1 24.020 204 151 3 273 472 239 442 1.19e-16 82.4
Msa1425600 AT4G01070.2 25.895 363 223 16 13 353 8 346 1.63e-16 81.3
Msa1425600 AT4G09500.2 21.962 469 286 18 8 448 1 417 2.99e-16 81.3
Msa1425600 AT5G54060.1 23.183 289 201 8 187 468 184 458 2.13e-14 75.9
Msa1425600 AT4G09500.1 26.705 176 123 4 278 448 218 392 2.59e-14 75.1
Msa1425600 AT1G64920.1 23.902 205 146 6 273 470 238 439 4.60e-12 68.6

Find 114 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAATTCCACGTCGATTTC+GGG 0.187714 tig0025874:+39381 None:intergenic
CATTAAGGCCTTTGGTTAAA+AGG 0.194942 tig0025874:+39805 None:intergenic
TGTATTCATCAGGGGATTTA+AGG 0.195702 tig0025874:+39643 None:intergenic
AATGGGCCTACAGGTGTAAT+TGG 0.210652 tig0025874:+39177 None:intergenic
ACCAATAGGACATGAATTTC+TGG 0.211648 tig0025874:+39879 None:intergenic
GAGACTAATGGGACCGAATT+TGG 0.214605 tig0025874:+39608 None:intergenic
AGCAAATTCTTTCTACGAAT+TGG 0.238092 tig0025874:-39235 Msa1425600:CDS
GGGTAATTCCACGTCGATTT+CGG 0.251769 tig0025874:+39380 None:intergenic
ATATCCCATGTGCTTGTCTT+TGG 0.268042 tig0025874:-39479 Msa1425600:CDS
GAAACAAGCATTGCATTTGT+TGG 0.324145 tig0025874:+38724 None:intergenic
AGTAATGAAGGTGGAACTAA+TGG 0.348707 tig0025874:+39159 None:intergenic
TGGTGGCAAGTGTGACATTA+AGG 0.349319 tig0025874:+39790 None:intergenic
ACCAGAAATTCATGTCCTAT+TGG 0.362491 tig0025874:-39880 Msa1425600:CDS
TAACTGAAGATGGTGGCTTT+TGG 0.369876 tig0025874:+39064 None:intergenic
AAGACATGAAGAAACTGAAA+TGG 0.388659 tig0025874:-39263 Msa1425600:CDS
ACCTCCAACAATTTCTTCAA+TGG 0.392071 tig0025874:+38627 None:intergenic
ATCAGGGGATTTAAGGCCTT+GGG 0.394811 tig0025874:+39650 None:intergenic
ATGAGATTTGTGAGACTAAT+GGG 0.397989 tig0025874:+39597 None:intergenic
TATGGGGATTCGGTTGAAAC+AGG 0.399818 tig0025874:-38689 Msa1425600:CDS
ATTTCAGTTTCTTCATGTCT+TGG 0.400551 tig0025874:+39265 None:intergenic
GTGTCCACAAACTAAGGTTT+TGG 0.404149 tig0025874:-38854 Msa1425600:CDS
AAGTGTGACATTAAGGCCTT+TGG 0.409212 tig0025874:+39797 None:intergenic
CATCAGGGGATTTAAGGCCT+TGG 0.411880 tig0025874:+39649 None:intergenic
ATTAAGGCCTTTGGTTAAAA+GGG 0.414486 tig0025874:+39806 None:intergenic
GTGATGAAGAGTAAGGATAT+TGG 0.420945 tig0025874:-38946 Msa1425600:CDS
ATGAGTTCCATGTATTCATC+AGG 0.421010 tig0025874:+39633 None:intergenic
ATTTGCCTAGTCTAAGTAAA+GGG 0.429558 tig0025874:+39829 None:intergenic
GCGAGGGAGGCGGTGGCTGA+TGG 0.437864 tig0025874:-38556 Msa1425600:CDS
GTTAAGAAACACGCTATTGC+AGG 0.441026 tig0025874:+38826 None:intergenic
TACATGGTGTCCACAAACTA+AGG 0.443360 tig0025874:-38860 Msa1425600:CDS
ACATGCGGCGAGGGAGGCGG+TGG 0.445235 tig0025874:-38563 Msa1425600:CDS
AACGATAGTATATGGAGTAA+AGG 0.445421 tig0025874:+39442 None:intergenic
TTTGCTACCCAAGGAACAAA+AGG 0.448391 tig0025874:+39519 None:intergenic
ACGATAGTATATGGAGTAAA+GGG 0.453056 tig0025874:+39443 None:intergenic
GTTGTAGAAACGATAGTATA+TGG 0.453669 tig0025874:+39434 None:intergenic
GATGAGATTTGTGAGACTAA+TGG 0.455139 tig0025874:+39596 None:intergenic
TTAGTTCCACCTTCATTACT+AGG 0.457678 tig0025874:-39156 Msa1425600:CDS
TCAGTTATATATATTTCATT+CGG 0.457992 tig0025874:-39048 Msa1425600:CDS
GAGCTGAAAATGCAACCAAT+AGG 0.460632 tig0025874:+39865 None:intergenic
ATGGAACTCATAGCCAAATT+CGG 0.461232 tig0025874:-39621 Msa1425600:CDS
TGATCTTGACCTAGTAATGA+AGG 0.463203 tig0025874:+39147 None:intergenic
AGAGCCATTGAAGAAATTGT+TGG 0.473416 tig0025874:-38631 Msa1425600:CDS
TTAGAAGAAACAAAAGAGAA+AGG 0.474379 tig0025874:-38892 Msa1425600:CDS
CATTGTGGATAACCAATCAT+AGG 0.478572 tig0025874:+38757 None:intergenic
GGTGGAACTAATGGGCCTAC+AGG 0.479863 tig0025874:+39168 None:intergenic
TGGTTTCAGCAATGGAAGAC+CGG 0.481559 tig0025874:+39359 None:intergenic
ATGGGCCTACAGGTGTAATT+GGG 0.485212 tig0025874:+39178 None:intergenic
GAAATATATATAACTGAAGA+TGG 0.487490 tig0025874:+39054 None:intergenic
AAGAAATTGTTGGAGGTGAA+AGG 0.488865 tig0025874:-38621 Msa1425600:CDS
CACAAGATTCTTGCATGGAA+TGG 0.490164 tig0025874:-39092 Msa1425600:CDS
TTTGATGGAAGAATAAAAGA+TGG 0.494976 tig0025874:+39327 None:intergenic
AAAAGATGTCATTGATTCAA+TGG 0.497573 tig0025874:-39211 Msa1425600:CDS
CGGTTGAAACAGGACAATGA+TGG 0.499891 tig0025874:-38679 Msa1425600:CDS
AGAAAGGATTGGTTGTTACA+TGG 0.502350 tig0025874:-38876 Msa1425600:CDS
AGGGAGGCGGTGGCTGATGG+TGG 0.507840 tig0025874:-38553 Msa1425600:CDS
GAAACATGCGGCGAGGGAGG+CGG 0.508586 tig0025874:-38566 Msa1425600:CDS
AAACAGGACGTTGATTCCAT+TGG 0.517626 tig0025874:+39695 None:intergenic
AGGTCTTGTGGTTTCAGCAA+TGG 0.518610 tig0025874:+39351 None:intergenic
GTTTCTTAACACACTGTGGA+TGG 0.529174 tig0025874:-38813 Msa1425600:CDS
AGACATGAAGAAACTGAAAT+GGG 0.530587 tig0025874:-39262 Msa1425600:CDS
ATAAAAGATGGAAGGTCTTG+TGG 0.531512 tig0025874:+39339 None:intergenic
AGAAACAAAAGAGAAAGGAT+TGG 0.532118 tig0025874:-38887 Msa1425600:CDS
GTAATGAAGGTGGAACTAAT+GGG 0.535852 tig0025874:+39160 None:intergenic
GGTTGAAACAGGACAATGAT+GGG 0.536148 tig0025874:-38678 Msa1425600:CDS
ACTGCAGGAGTACCTATGAT+TGG 0.539262 tig0025874:-38769 Msa1425600:CDS
GATTTGCCTAGTCTAAGTAA+AGG 0.540884 tig0025874:+39828 None:intergenic
TAAATCCCCTGATGAATACA+TGG 0.543699 tig0025874:-39640 Msa1425600:CDS
GGAGCTGAAACATGCGGCGA+GGG 0.548892 tig0025874:-38572 Msa1425600:CDS
TCTCTGGGTGATGAAGAGTA+AGG 0.551074 tig0025874:-38953 Msa1425600:CDS
CCCACTTCTTACTCTACCAA+TGG 0.551509 tig0025874:-39711 Msa1425600:CDS
GAACATTTCAGCTAAAACAT+CGG 0.554683 tig0025874:+39287 None:intergenic
GCCATTGAAGAAATTGTTGG+AGG 0.554838 tig0025874:-38628 Msa1425600:CDS
TGAACCAAAACCTTAGTTTG+TGG 0.556902 tig0025874:+38850 None:intergenic
GCTGAAACATGCGGCGAGGG+AGG 0.560744 tig0025874:-38569 Msa1425600:CDS
TTGCTACCCAAGGAACAAAA+GGG 0.560980 tig0025874:+39520 None:intergenic
ACATTGGAAGCTGTAACTGC+AGG 0.571139 tig0025874:-38784 Msa1425600:CDS
CCATTGGTAGAGTAAGAAGT+GGG 0.575004 tig0025874:+39711 None:intergenic
GGGGACGGTGTCTGTGTCTG+TGG 0.576171 tig0025874:+39731 None:intergenic
TTCAGCTAAAACATCGGACA+TGG 0.577833 tig0025874:+39293 None:intergenic
TGTTCCTTGGGTAGCAAACG+TGG 0.583754 tig0025874:-39514 Msa1425600:CDS
ATGGAAGAATAAAAGATGGA+AGG 0.584353 tig0025874:+39331 None:intergenic
GACGGTGTCTGTGTCTGTGG+TGG 0.586453 tig0025874:+39734 None:intergenic
TATATGGAGTAAAGGGTACA+AGG 0.589998 tig0025874:+39450 None:intergenic
GGTTTCAGCAATGGAAGACC+GGG 0.596842 tig0025874:+39360 None:intergenic
GTAATTCCACGTCGATTTCG+GGG 0.603436 tig0025874:+39382 None:intergenic
TTGGGATATGTCGAAGCCGT+CGG 0.609015 tig0025874:+39668 None:intergenic
TGAGTTCCATGTATTCATCA+GGG 0.611788 tig0025874:+39634 None:intergenic
CTGATGGTGGCTCTTCTGAG+AGG 0.612329 tig0025874:-38540 Msa1425600:CDS
GAAATCGACGTGGAATTACC+CGG 0.614583 tig0025874:-39378 Msa1425600:CDS
TAAGCCACGTTTGCTACCCA+AGG 0.618408 tig0025874:+39510 None:intergenic
TCCATTGGTAGAGTAAGAAG+TGG 0.625007 tig0025874:+39710 None:intergenic
CTATGATTGGTTATCCACAA+TGG 0.629343 tig0025874:-38756 Msa1425600:CDS
GAGTTCCATGTATTCATCAG+GGG 0.630496 tig0025874:+39635 None:intergenic
GTTGGTTGATCAGTCCATTG+TGG 0.632886 tig0025874:+38742 None:intergenic
CTGTGGATGGAATTCTACAT+TGG 0.633378 tig0025874:-38800 Msa1425600:CDS
CATTCCATGCAAGAATCTTG+TGG 0.635345 tig0025874:+39093 None:intergenic
ATAAACCCTTTACTTAGACT+AGG 0.638559 tig0025874:-39834 Msa1425600:CDS
GACGCCACAAGATTCTTGCA+TGG 0.640093 tig0025874:-39097 Msa1425600:CDS
ATATATATAACTGAAGATGG+TGG 0.642086 tig0025874:+39057 None:intergenic
GACGGCTTCGACATATCCCA+AGG 0.643166 tig0025874:-39666 Msa1425600:CDS
TGGTGGTTGATTTGAAGACA+CGG 0.645486 tig0025874:+39751 None:intergenic
TGGAGCTGAAACATGCGGCG+AGG 0.651171 tig0025874:-38573 Msa1425600:CDS
TCTTGACCTAGTAATGAAGG+TGG 0.666199 tig0025874:+39150 None:intergenic
TGAATCCAAAGACAAGCACA+TGG 0.666711 tig0025874:+39474 None:intergenic
AAGACGTTGGAATTGAAATG+TGG 0.668188 tig0025874:-39119 Msa1425600:CDS
TGCGTTGGAGCTGAAACATG+CGG 0.670482 tig0025874:-38578 Msa1425600:CDS
GGTAGAGTAAGAAGTGGGGA+CGG 0.671471 tig0025874:+39716 None:intergenic
GCGTGTTTCTTAACACACTG+TGG 0.672897 tig0025874:-38817 Msa1425600:CDS
AGAAAACCCCGAAATCGACG+TGG 0.674952 tig0025874:-39388 Msa1425600:CDS
GTGGTAAACTAATTCAGTGG+TGG 0.675799 tig0025874:+39773 None:intergenic
GAATCCAAAGACAAGCACAT+GGG 0.703367 tig0025874:+39475 None:intergenic
ACGGTGGTAAACTAATTCAG+TGG 0.706027 tig0025874:+39770 None:intergenic
CATTGGTAGAGTAAGAAGTG+GGG 0.739463 tig0025874:+39712 None:intergenic
TGGTTGATTTGAAGACACGG+TGG 0.837597 tig0025874:+39754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAGTTATATATATTTCATT+CGG - tig0025874:39341-39360 Msa1425600:CDS 15.0%
!! TCAGTTATATATATTTCATT+CGG - tig0025874:39341-39360 Msa1425600:CDS 15.0%
!! GAAATATATATAACTGAAGA+TGG + tig0025874:39338-39357 None:intergenic 20.0%
!! GAAATATATATAACTGAAGA+TGG + tig0025874:39338-39357 None:intergenic 20.0%
!!! GATAATGCAAGCTAATTTTT+TGG + tig0025874:38844-38863 None:intergenic 25.0%
! TTTGATGGAAGAATAAAAGA+TGG + tig0025874:39065-39084 None:intergenic 25.0%
!! ATGGTTTTTATAGGATTTGA+TGG + tig0025874:39080-39099 None:intergenic 25.0%
!!! AAAAGATGTCATTGATTCAA+TGG - tig0025874:39178-39197 Msa1425600:CDS 25.0%
! ATATATATAACTGAAGATGG+TGG + tig0025874:39335-39354 None:intergenic 25.0%
!! ACAGTAACAAATATTTTCTC+TGG - tig0025874:39420-39439 Msa1425600:CDS 25.0%
!! CAGTAACAAATATTTTCTCT+GGG - tig0025874:39421-39440 Msa1425600:CDS 25.0%
! TTAGAAGAAACAAAAGAGAA+AGG - tig0025874:39497-39516 Msa1425600:CDS 25.0%
!!! GATAATGCAAGCTAATTTTT+TGG + tig0025874:38844-38863 None:intergenic 25.0%
! TTTGATGGAAGAATAAAAGA+TGG + tig0025874:39065-39084 None:intergenic 25.0%
!! ATGGTTTTTATAGGATTTGA+TGG + tig0025874:39080-39099 None:intergenic 25.0%
!!! AAAAGATGTCATTGATTCAA+TGG - tig0025874:39178-39197 Msa1425600:CDS 25.0%
! ATATATATAACTGAAGATGG+TGG + tig0025874:39335-39354 None:intergenic 25.0%
!! ACAGTAACAAATATTTTCTC+TGG - tig0025874:39420-39439 Msa1425600:CDS 25.0%
!! CAGTAACAAATATTTTCTCT+GGG - tig0025874:39421-39440 Msa1425600:CDS 25.0%
! TTAGAAGAAACAAAAGAGAA+AGG - tig0025874:39497-39516 Msa1425600:CDS 25.0%
ATAAACCCTTTACTTAGACT+AGG - tig0025874:38555-38574 Msa1425600:CDS 30.0%
ATTTGCCTAGTCTAAGTAAA+GGG + tig0025874:38563-38582 None:intergenic 30.0%
ATTAAGGCCTTTGGTTAAAA+GGG + tig0025874:38586-38605 None:intergenic 30.0%
ATGAGATTTGTGAGACTAAT+GGG + tig0025874:38795-38814 None:intergenic 30.0%
!!! TGCAAGCTAATTTTTTGGAA+GGG + tig0025874:38839-38858 None:intergenic 30.0%
!!! ATGCAAGCTAATTTTTTGGA+AGG + tig0025874:38840-38859 None:intergenic 30.0%
ACGATAGTATATGGAGTAAA+GGG + tig0025874:38949-38968 None:intergenic 30.0%
AACGATAGTATATGGAGTAA+AGG + tig0025874:38950-38969 None:intergenic 30.0%
GTTGTAGAAACGATAGTATA+TGG + tig0025874:38958-38977 None:intergenic 30.0%
ATGGAAGAATAAAAGATGGA+AGG + tig0025874:39061-39080 None:intergenic 30.0%
GAACATTTCAGCTAAAACAT+CGG + tig0025874:39105-39124 None:intergenic 30.0%
ATTTCAGTTTCTTCATGTCT+TGG + tig0025874:39127-39146 None:intergenic 30.0%
AAGACATGAAGAAACTGAAA+TGG - tig0025874:39126-39145 Msa1425600:CDS 30.0%
AGACATGAAGAAACTGAAAT+GGG - tig0025874:39127-39146 Msa1425600:CDS 30.0%
AGCAAATTCTTTCTACGAAT+TGG - tig0025874:39154-39173 Msa1425600:CDS 30.0%
AGAAACAAAAGAGAAAGGAT+TGG - tig0025874:39502-39521 Msa1425600:CDS 30.0%
!! TGTTTCTGATGTTTTTCGTA+TGG - tig0025874:39682-39701 Msa1425600:CDS 30.0%
! GTTTCTGATGTTTTTCGTAT+GGG - tig0025874:39683-39702 Msa1425600:CDS 30.0%
! TTTCTGATGTTTTTCGTATG+GGG - tig0025874:39684-39703 Msa1425600:CDS 30.0%
AGTGTTTAAGAAAAATGCGT+TGG - tig0025874:39796-39815 Msa1425600:CDS 30.0%
ATAAACCCTTTACTTAGACT+AGG - tig0025874:38555-38574 Msa1425600:CDS 30.0%
ATTTGCCTAGTCTAAGTAAA+GGG + tig0025874:38563-38582 None:intergenic 30.0%
ATTAAGGCCTTTGGTTAAAA+GGG + tig0025874:38586-38605 None:intergenic 30.0%
ATGAGATTTGTGAGACTAAT+GGG + tig0025874:38795-38814 None:intergenic 30.0%
!!! TGCAAGCTAATTTTTTGGAA+GGG + tig0025874:38839-38858 None:intergenic 30.0%
!!! ATGCAAGCTAATTTTTTGGA+AGG + tig0025874:38840-38859 None:intergenic 30.0%
ACGATAGTATATGGAGTAAA+GGG + tig0025874:38949-38968 None:intergenic 30.0%
AACGATAGTATATGGAGTAA+AGG + tig0025874:38950-38969 None:intergenic 30.0%
GTTGTAGAAACGATAGTATA+TGG + tig0025874:38958-38977 None:intergenic 30.0%
ATGGAAGAATAAAAGATGGA+AGG + tig0025874:39061-39080 None:intergenic 30.0%
GAACATTTCAGCTAAAACAT+CGG + tig0025874:39105-39124 None:intergenic 30.0%
ATTTCAGTTTCTTCATGTCT+TGG + tig0025874:39127-39146 None:intergenic 30.0%
AAGACATGAAGAAACTGAAA+TGG - tig0025874:39126-39145 Msa1425600:CDS 30.0%
AGACATGAAGAAACTGAAAT+GGG - tig0025874:39127-39146 Msa1425600:CDS 30.0%
AGCAAATTCTTTCTACGAAT+TGG - tig0025874:39154-39173 Msa1425600:CDS 30.0%
AGAAACAAAAGAGAAAGGAT+TGG - tig0025874:39502-39521 Msa1425600:CDS 30.0%
!! TGTTTCTGATGTTTTTCGTA+TGG - tig0025874:39682-39701 Msa1425600:CDS 30.0%
! GTTTCTGATGTTTTTCGTAT+GGG - tig0025874:39683-39702 Msa1425600:CDS 30.0%
! TTTCTGATGTTTTTCGTATG+GGG - tig0025874:39684-39703 Msa1425600:CDS 30.0%
AGTGTTTAAGAAAAATGCGT+TGG - tig0025874:39796-39815 Msa1425600:CDS 30.0%
ACCAGAAATTCATGTCCTAT+TGG - tig0025874:38509-38528 Msa1425600:CDS 35.0%
ACCAATAGGACATGAATTTC+TGG + tig0025874:38513-38532 None:intergenic 35.0%
GATTTGCCTAGTCTAAGTAA+AGG + tig0025874:38564-38583 None:intergenic 35.0%
CATTAAGGCCTTTGGTTAAA+AGG + tig0025874:38587-38606 None:intergenic 35.0%
TGTATTCATCAGGGGATTTA+AGG + tig0025874:38749-38768 None:intergenic 35.0%
TAAATCCCCTGATGAATACA+TGG - tig0025874:38749-38768 Msa1425600:CDS 35.0%
TGAGTTCCATGTATTCATCA+GGG + tig0025874:38758-38777 None:intergenic 35.0%
ATGAGTTCCATGTATTCATC+AGG + tig0025874:38759-38778 None:intergenic 35.0%
ATGGAACTCATAGCCAAATT+CGG - tig0025874:38768-38787 Msa1425600:CDS 35.0%
GATGAGATTTGTGAGACTAA+TGG + tig0025874:38796-38815 None:intergenic 35.0%
! TCAATAACCCTTTTGTTCCT+TGG - tig0025874:38862-38881 Msa1425600:CDS 35.0%
! CAATAACCCTTTTGTTCCTT+GGG - tig0025874:38863-38882 Msa1425600:CDS 35.0%
! TATATGGAGTAAAGGGTACA+AGG + tig0025874:38942-38961 None:intergenic 35.0%
ATAAAAGATGGAAGGTCTTG+TGG + tig0025874:39053-39072 None:intergenic 35.0%
! ACATCGGACATGGTTTTTAT+AGG + tig0025874:39089-39108 None:intergenic 35.0%
! ATTTTCCCAATTACACCTGT+AGG - tig0025874:39206-39225 Msa1425600:CDS 35.0%
GTAATGAAGGTGGAACTAAT+GGG + tig0025874:39232-39251 None:intergenic 35.0%
AGTAATGAAGGTGGAACTAA+TGG + tig0025874:39233-39252 None:intergenic 35.0%
TTAGTTCCACCTTCATTACT+AGG - tig0025874:39233-39252 Msa1425600:CDS 35.0%
TGATCTTGACCTAGTAATGA+AGG + tig0025874:39245-39264 None:intergenic 35.0%
CAAGATCAAAAACAAGACGT+TGG - tig0025874:39257-39276 Msa1425600:CDS 35.0%
AAGACGTTGGAATTGAAATG+TGG - tig0025874:39270-39289 Msa1425600:CDS 35.0%
GTGATGAAGAGTAAGGATAT+TGG - tig0025874:39443-39462 Msa1425600:CDS 35.0%
!! AGAAAGGATTGGTTGTTACA+TGG - tig0025874:39513-39532 Msa1425600:CDS 35.0%
! TGAACCAAAACCTTAGTTTG+TGG + tig0025874:39542-39561 None:intergenic 35.0%
CATTGTGGATAACCAATCAT+AGG + tig0025874:39635-39654 None:intergenic 35.0%
! CTATGATTGGTTATCCACAA+TGG - tig0025874:39633-39652 Msa1425600:CDS 35.0%
! GAAACAAGCATTGCATTTGT+TGG + tig0025874:39668-39687 None:intergenic 35.0%
! ATGTTTTTCGTATGGGGATT+CGG - tig0025874:39690-39709 Msa1425600:CDS 35.0%
AGAGCCATTGAAGAAATTGT+TGG - tig0025874:39758-39777 Msa1425600:CDS 35.0%
ACCTCCAACAATTTCTTCAA+TGG + tig0025874:39765-39784 None:intergenic 35.0%
AAGAAATTGTTGGAGGTGAA+AGG - tig0025874:39768-39787 Msa1425600:CDS 35.0%
ACCAGAAATTCATGTCCTAT+TGG - tig0025874:38509-38528 Msa1425600:CDS 35.0%
ACCAATAGGACATGAATTTC+TGG + tig0025874:38513-38532 None:intergenic 35.0%
GATTTGCCTAGTCTAAGTAA+AGG + tig0025874:38564-38583 None:intergenic 35.0%
CATTAAGGCCTTTGGTTAAA+AGG + tig0025874:38587-38606 None:intergenic 35.0%
TGTATTCATCAGGGGATTTA+AGG + tig0025874:38749-38768 None:intergenic 35.0%
TAAATCCCCTGATGAATACA+TGG - tig0025874:38749-38768 Msa1425600:CDS 35.0%
TGAGTTCCATGTATTCATCA+GGG + tig0025874:38758-38777 None:intergenic 35.0%
ATGAGTTCCATGTATTCATC+AGG + tig0025874:38759-38778 None:intergenic 35.0%
ATGGAACTCATAGCCAAATT+CGG - tig0025874:38768-38787 Msa1425600:CDS 35.0%
GATGAGATTTGTGAGACTAA+TGG + tig0025874:38796-38815 None:intergenic 35.0%
! TCAATAACCCTTTTGTTCCT+TGG - tig0025874:38862-38881 Msa1425600:CDS 35.0%
! CAATAACCCTTTTGTTCCTT+GGG - tig0025874:38863-38882 Msa1425600:CDS 35.0%
! TATATGGAGTAAAGGGTACA+AGG + tig0025874:38942-38961 None:intergenic 35.0%
ATAAAAGATGGAAGGTCTTG+TGG + tig0025874:39053-39072 None:intergenic 35.0%
! ACATCGGACATGGTTTTTAT+AGG + tig0025874:39089-39108 None:intergenic 35.0%
! ATTTTCCCAATTACACCTGT+AGG - tig0025874:39206-39225 Msa1425600:CDS 35.0%
GTAATGAAGGTGGAACTAAT+GGG + tig0025874:39232-39251 None:intergenic 35.0%
AGTAATGAAGGTGGAACTAA+TGG + tig0025874:39233-39252 None:intergenic 35.0%
TTAGTTCCACCTTCATTACT+AGG - tig0025874:39233-39252 Msa1425600:CDS 35.0%
TGATCTTGACCTAGTAATGA+AGG + tig0025874:39245-39264 None:intergenic 35.0%
CAAGATCAAAAACAAGACGT+TGG - tig0025874:39257-39276 Msa1425600:CDS 35.0%
AAGACGTTGGAATTGAAATG+TGG - tig0025874:39270-39289 Msa1425600:CDS 35.0%
GTGATGAAGAGTAAGGATAT+TGG - tig0025874:39443-39462 Msa1425600:CDS 35.0%
!! AGAAAGGATTGGTTGTTACA+TGG - tig0025874:39513-39532 Msa1425600:CDS 35.0%
! TGAACCAAAACCTTAGTTTG+TGG + tig0025874:39542-39561 None:intergenic 35.0%
CATTGTGGATAACCAATCAT+AGG + tig0025874:39635-39654 None:intergenic 35.0%
! CTATGATTGGTTATCCACAA+TGG - tig0025874:39633-39652 Msa1425600:CDS 35.0%
! GAAACAAGCATTGCATTTGT+TGG + tig0025874:39668-39687 None:intergenic 35.0%
! ATGTTTTTCGTATGGGGATT+CGG - tig0025874:39690-39709 Msa1425600:CDS 35.0%
AGAGCCATTGAAGAAATTGT+TGG - tig0025874:39758-39777 Msa1425600:CDS 35.0%
ACCTCCAACAATTTCTTCAA+TGG + tig0025874:39765-39784 None:intergenic 35.0%
AAGAAATTGTTGGAGGTGAA+AGG - tig0025874:39768-39787 Msa1425600:CDS 35.0%
GAGCTGAAAATGCAACCAAT+AGG + tig0025874:38527-38546 None:intergenic 40.0%
! TTGGTTGCATTTTCAGCTCA+AGG - tig0025874:38528-38547 Msa1425600:CDS 40.0%
! GGCAAATCCCTTTTAACCAA+AGG - tig0025874:38576-38595 Msa1425600:CDS 40.0%
AAGTGTGACATTAAGGCCTT+TGG + tig0025874:38595-38614 None:intergenic 40.0%
GTGGTAAACTAATTCAGTGG+TGG + tig0025874:38619-38638 None:intergenic 40.0%
ACGGTGGTAAACTAATTCAG+TGG + tig0025874:38622-38641 None:intergenic 40.0%
!! TGGTGGTTGATTTGAAGACA+CGG + tig0025874:38641-38660 None:intergenic 40.0%
CATTGGTAGAGTAAGAAGTG+GGG + tig0025874:38680-38699 None:intergenic 40.0%
CCATTGGTAGAGTAAGAAGT+GGG + tig0025874:38681-38700 None:intergenic 40.0%
TCCATTGGTAGAGTAAGAAG+TGG + tig0025874:38682-38701 None:intergenic 40.0%
!! AAACAGGACGTTGATTCCAT+TGG + tig0025874:38697-38716 None:intergenic 40.0%
GAGTTCCATGTATTCATCAG+GGG + tig0025874:38757-38776 None:intergenic 40.0%
TTGCTACCCAAGGAACAAAA+GGG + tig0025874:38872-38891 None:intergenic 40.0%
TTTGCTACCCAAGGAACAAA+AGG + tig0025874:38873-38892 None:intergenic 40.0%
ATATCCCATGTGCTTGTCTT+TGG - tig0025874:38910-38929 Msa1425600:CDS 40.0%
GAATCCAAAGACAAGCACAT+GGG + tig0025874:38917-38936 None:intergenic 40.0%
TGAATCCAAAGACAAGCACA+TGG + tig0025874:38918-38937 None:intergenic 40.0%
TTCAGCTAAAACATCGGACA+TGG + tig0025874:39099-39118 None:intergenic 40.0%
TCTTGACCTAGTAATGAAGG+TGG + tig0025874:39242-39261 None:intergenic 40.0%
CATTCCATGCAAGAATCTTG+TGG + tig0025874:39299-39318 None:intergenic 40.0%
CACAAGATTCTTGCATGGAA+TGG - tig0025874:39297-39316 Msa1425600:CDS 40.0%
!! TAACTGAAGATGGTGGCTTT+TGG + tig0025874:39328-39347 None:intergenic 40.0%
TACATGGTGTCCACAAACTA+AGG - tig0025874:39529-39548 Msa1425600:CDS 40.0%
! GTGTCCACAAACTAAGGTTT+TGG - tig0025874:39535-39554 Msa1425600:CDS 40.0%
GTTAAGAAACACGCTATTGC+AGG + tig0025874:39566-39585 None:intergenic 40.0%
GTTTCTTAACACACTGTGGA+TGG - tig0025874:39576-39595 Msa1425600:CDS 40.0%
CTGTGGATGGAATTCTACAT+TGG - tig0025874:39589-39608 Msa1425600:CDS 40.0%
GGTTGAAACAGGACAATGAT+GGG - tig0025874:39711-39730 Msa1425600:CDS 40.0%
GCCATTGAAGAAATTGTTGG+AGG - tig0025874:39761-39780 Msa1425600:CDS 40.0%
GAGCTGAAAATGCAACCAAT+AGG + tig0025874:38527-38546 None:intergenic 40.0%
! TTGGTTGCATTTTCAGCTCA+AGG - tig0025874:38528-38547 Msa1425600:CDS 40.0%
! GGCAAATCCCTTTTAACCAA+AGG - tig0025874:38576-38595 Msa1425600:CDS 40.0%
AAGTGTGACATTAAGGCCTT+TGG + tig0025874:38595-38614 None:intergenic 40.0%
GTGGTAAACTAATTCAGTGG+TGG + tig0025874:38619-38638 None:intergenic 40.0%
ACGGTGGTAAACTAATTCAG+TGG + tig0025874:38622-38641 None:intergenic 40.0%
!! TGGTGGTTGATTTGAAGACA+CGG + tig0025874:38641-38660 None:intergenic 40.0%
CATTGGTAGAGTAAGAAGTG+GGG + tig0025874:38680-38699 None:intergenic 40.0%
CCATTGGTAGAGTAAGAAGT+GGG + tig0025874:38681-38700 None:intergenic 40.0%
TCCATTGGTAGAGTAAGAAG+TGG + tig0025874:38682-38701 None:intergenic 40.0%
!! AAACAGGACGTTGATTCCAT+TGG + tig0025874:38697-38716 None:intergenic 40.0%
GAGTTCCATGTATTCATCAG+GGG + tig0025874:38757-38776 None:intergenic 40.0%
TTGCTACCCAAGGAACAAAA+GGG + tig0025874:38872-38891 None:intergenic 40.0%
TTTGCTACCCAAGGAACAAA+AGG + tig0025874:38873-38892 None:intergenic 40.0%
ATATCCCATGTGCTTGTCTT+TGG - tig0025874:38910-38929 Msa1425600:CDS 40.0%
GAATCCAAAGACAAGCACAT+GGG + tig0025874:38917-38936 None:intergenic 40.0%
TGAATCCAAAGACAAGCACA+TGG + tig0025874:38918-38937 None:intergenic 40.0%
TTCAGCTAAAACATCGGACA+TGG + tig0025874:39099-39118 None:intergenic 40.0%
TCTTGACCTAGTAATGAAGG+TGG + tig0025874:39242-39261 None:intergenic 40.0%
CATTCCATGCAAGAATCTTG+TGG + tig0025874:39299-39318 None:intergenic 40.0%
CACAAGATTCTTGCATGGAA+TGG - tig0025874:39297-39316 Msa1425600:CDS 40.0%
!! TAACTGAAGATGGTGGCTTT+TGG + tig0025874:39328-39347 None:intergenic 40.0%
TACATGGTGTCCACAAACTA+AGG - tig0025874:39529-39548 Msa1425600:CDS 40.0%
! GTGTCCACAAACTAAGGTTT+TGG - tig0025874:39535-39554 Msa1425600:CDS 40.0%
GTTAAGAAACACGCTATTGC+AGG + tig0025874:39566-39585 None:intergenic 40.0%
GTTTCTTAACACACTGTGGA+TGG - tig0025874:39576-39595 Msa1425600:CDS 40.0%
CTGTGGATGGAATTCTACAT+TGG - tig0025874:39589-39608 Msa1425600:CDS 40.0%
GGTTGAAACAGGACAATGAT+GGG - tig0025874:39711-39730 Msa1425600:CDS 40.0%
GCCATTGAAGAAATTGTTGG+AGG - tig0025874:39761-39780 Msa1425600:CDS 40.0%
TGGTGGCAAGTGTGACATTA+AGG + tig0025874:38602-38621 None:intergenic 45.0%
!! TGGTTGATTTGAAGACACGG+TGG + tig0025874:38638-38657 None:intergenic 45.0%
CCCACTTCTTACTCTACCAA+TGG - tig0025874:38678-38697 Msa1425600:CDS 45.0%
!! AACGTCCTGTTTTTCTCCGA+CGG - tig0025874:38705-38724 Msa1425600:CDS 45.0%
! ATCAGGGGATTTAAGGCCTT+GGG + tig0025874:38742-38761 None:intergenic 45.0%
GAGACTAATGGGACCGAATT+TGG + tig0025874:38784-38803 None:intergenic 45.0%
!!! GGTTTTCTAGGGTTGGAAAC+TGG + tig0025874:38989-39008 None:intergenic 45.0%
!!! ATTTCGGGGTTTTCTAGGGT+TGG + tig0025874:38996-39015 None:intergenic 45.0%
!! GTCGATTTCGGGGTTTTCTA+GGG + tig0025874:39000-39019 None:intergenic 45.0%
!! GTAATTCCACGTCGATTTCG+GGG + tig0025874:39010-39029 None:intergenic 45.0%
!! GGTAATTCCACGTCGATTTC+GGG + tig0025874:39011-39030 None:intergenic 45.0%
!! GGGTAATTCCACGTCGATTT+CGG + tig0025874:39012-39031 None:intergenic 45.0%
GAAATCGACGTGGAATTACC+CGG - tig0025874:39011-39030 Msa1425600:CDS 45.0%
TGGTTTCAGCAATGGAAGAC+CGG + tig0025874:39033-39052 None:intergenic 45.0%
! AGGTCTTGTGGTTTCAGCAA+TGG + tig0025874:39041-39060 None:intergenic 45.0%
ATGGGCCTACAGGTGTAATT+GGG + tig0025874:39214-39233 None:intergenic 45.0%
AATGGGCCTACAGGTGTAAT+TGG + tig0025874:39215-39234 None:intergenic 45.0%
TCTCTGGGTGATGAAGAGTA+AGG - tig0025874:39436-39455 Msa1425600:CDS 45.0%
GCGTGTTTCTTAACACACTG+TGG - tig0025874:39572-39591 Msa1425600:CDS 45.0%
ACATTGGAAGCTGTAACTGC+AGG - tig0025874:39605-39624 Msa1425600:CDS 45.0%
!! ACTGCAGGAGTACCTATGAT+TGG - tig0025874:39620-39639 Msa1425600:CDS 45.0%
GTTGGTTGATCAGTCCATTG+TGG + tig0025874:39650-39669 None:intergenic 45.0%
! TATGGGGATTCGGTTGAAAC+AGG - tig0025874:39700-39719 Msa1425600:CDS 45.0%
CGGTTGAAACAGGACAATGA+TGG - tig0025874:39710-39729 Msa1425600:CDS 45.0%
TGGTGGCAAGTGTGACATTA+AGG + tig0025874:38602-38621 None:intergenic 45.0%
!! TGGTTGATTTGAAGACACGG+TGG + tig0025874:38638-38657 None:intergenic 45.0%
CCCACTTCTTACTCTACCAA+TGG - tig0025874:38678-38697 Msa1425600:CDS 45.0%
!! AACGTCCTGTTTTTCTCCGA+CGG - tig0025874:38705-38724 Msa1425600:CDS 45.0%
! ATCAGGGGATTTAAGGCCTT+GGG + tig0025874:38742-38761 None:intergenic 45.0%
GAGACTAATGGGACCGAATT+TGG + tig0025874:38784-38803 None:intergenic 45.0%
!!! GGTTTTCTAGGGTTGGAAAC+TGG + tig0025874:38989-39008 None:intergenic 45.0%
!!! ATTTCGGGGTTTTCTAGGGT+TGG + tig0025874:38996-39015 None:intergenic 45.0%
!! GTCGATTTCGGGGTTTTCTA+GGG + tig0025874:39000-39019 None:intergenic 45.0%
!! GTAATTCCACGTCGATTTCG+GGG + tig0025874:39010-39029 None:intergenic 45.0%
!! GGTAATTCCACGTCGATTTC+GGG + tig0025874:39011-39030 None:intergenic 45.0%
!! GGGTAATTCCACGTCGATTT+CGG + tig0025874:39012-39031 None:intergenic 45.0%
GAAATCGACGTGGAATTACC+CGG - tig0025874:39011-39030 Msa1425600:CDS 45.0%
TGGTTTCAGCAATGGAAGAC+CGG + tig0025874:39033-39052 None:intergenic 45.0%
! AGGTCTTGTGGTTTCAGCAA+TGG + tig0025874:39041-39060 None:intergenic 45.0%
ATGGGCCTACAGGTGTAATT+GGG + tig0025874:39214-39233 None:intergenic 45.0%
AATGGGCCTACAGGTGTAAT+TGG + tig0025874:39215-39234 None:intergenic 45.0%
TCTCTGGGTGATGAAGAGTA+AGG - tig0025874:39436-39455 Msa1425600:CDS 45.0%
GCGTGTTTCTTAACACACTG+TGG - tig0025874:39572-39591 Msa1425600:CDS 45.0%
ACATTGGAAGCTGTAACTGC+AGG - tig0025874:39605-39624 Msa1425600:CDS 45.0%
!! ACTGCAGGAGTACCTATGAT+TGG - tig0025874:39620-39639 Msa1425600:CDS 45.0%
GTTGGTTGATCAGTCCATTG+TGG + tig0025874:39650-39669 None:intergenic 45.0%
! TATGGGGATTCGGTTGAAAC+AGG - tig0025874:39700-39719 Msa1425600:CDS 45.0%
CGGTTGAAACAGGACAATGA+TGG - tig0025874:39710-39729 Msa1425600:CDS 45.0%
GGTAGAGTAAGAAGTGGGGA+CGG + tig0025874:38676-38695 None:intergenic 50.0%
TTGGGATATGTCGAAGCCGT+CGG + tig0025874:38724-38743 None:intergenic 50.0%
! CATCAGGGGATTTAAGGCCT+TGG + tig0025874:38743-38762 None:intergenic 50.0%
TGTTCCTTGGGTAGCAAACG+TGG - tig0025874:38875-38894 Msa1425600:CDS 50.0%
! TAAGCCACGTTTGCTACCCA+AGG + tig0025874:38882-38901 None:intergenic 50.0%
!!! CGTCGATTTCGGGGTTTTCT+AGG + tig0025874:39001-39020 None:intergenic 50.0%
AGAAAACCCCGAAATCGACG+TGG - tig0025874:39001-39020 Msa1425600:CDS 50.0%
GGTTTCAGCAATGGAAGACC+GGG + tig0025874:39032-39051 None:intergenic 50.0%
GACGCCACAAGATTCTTGCA+TGG - tig0025874:39292-39311 Msa1425600:CDS 50.0%
TGCGTTGGAGCTGAAACATG+CGG - tig0025874:39811-39830 Msa1425600:CDS 50.0%
GGTAGAGTAAGAAGTGGGGA+CGG + tig0025874:38676-38695 None:intergenic 50.0%
TTGGGATATGTCGAAGCCGT+CGG + tig0025874:38724-38743 None:intergenic 50.0%
! CATCAGGGGATTTAAGGCCT+TGG + tig0025874:38743-38762 None:intergenic 50.0%
TGTTCCTTGGGTAGCAAACG+TGG - tig0025874:38875-38894 Msa1425600:CDS 50.0%
! TAAGCCACGTTTGCTACCCA+AGG + tig0025874:38882-38901 None:intergenic 50.0%
!!! CGTCGATTTCGGGGTTTTCT+AGG + tig0025874:39001-39020 None:intergenic 50.0%
AGAAAACCCCGAAATCGACG+TGG - tig0025874:39001-39020 Msa1425600:CDS 50.0%
GGTTTCAGCAATGGAAGACC+GGG + tig0025874:39032-39051 None:intergenic 50.0%
GACGCCACAAGATTCTTGCA+TGG - tig0025874:39292-39311 Msa1425600:CDS 50.0%
TGCGTTGGAGCTGAAACATG+CGG - tig0025874:39811-39830 Msa1425600:CDS 50.0%
CGAAGCCGTCGGAGAAAAAC+AGG + tig0025874:38713-38732 None:intergenic 55.0%
GACGGCTTCGACATATCCCA+AGG - tig0025874:38723-38742 Msa1425600:CDS 55.0%
! GGTGGAACTAATGGGCCTAC+AGG + tig0025874:39224-39243 None:intergenic 55.0%
!! CTGATGGTGGCTCTTCTGAG+AGG - tig0025874:39849-39868 Msa1425600:CDS 55.0%
CGAAGCCGTCGGAGAAAAAC+AGG + tig0025874:38713-38732 None:intergenic 55.0%
GACGGCTTCGACATATCCCA+AGG - tig0025874:38723-38742 Msa1425600:CDS 55.0%
! GGTGGAACTAATGGGCCTAC+AGG + tig0025874:39224-39243 None:intergenic 55.0%
!! CTGATGGTGGCTCTTCTGAG+AGG - tig0025874:39849-39868 Msa1425600:CDS 55.0%
GACGGTGTCTGTGTCTGTGG+TGG + tig0025874:38658-38677 None:intergenic 60.0%
TGGAGCTGAAACATGCGGCG+AGG - tig0025874:39816-39835 Msa1425600:CDS 60.0%
GGAGCTGAAACATGCGGCGA+GGG - tig0025874:39817-39836 Msa1425600:CDS 60.0%
GACGGTGTCTGTGTCTGTGG+TGG + tig0025874:38658-38677 None:intergenic 60.0%
TGGAGCTGAAACATGCGGCG+AGG - tig0025874:39816-39835 Msa1425600:CDS 60.0%
GGAGCTGAAACATGCGGCGA+GGG - tig0025874:39817-39836 Msa1425600:CDS 60.0%
GGGGACGGTGTCTGTGTCTG+TGG + tig0025874:38661-38680 None:intergenic 65.0%
GCTGAAACATGCGGCGAGGG+AGG - tig0025874:39820-39839 Msa1425600:CDS 65.0%
GAAACATGCGGCGAGGGAGG+CGG - tig0025874:39823-39842 Msa1425600:CDS 65.0%
GGGGACGGTGTCTGTGTCTG+TGG + tig0025874:38661-38680 None:intergenic 65.0%
GCTGAAACATGCGGCGAGGG+AGG - tig0025874:39820-39839 Msa1425600:CDS 65.0%
GAAACATGCGGCGAGGGAGG+CGG - tig0025874:39823-39842 Msa1425600:CDS 65.0%
AGGGAGGCGGTGGCTGATGG+TGG - tig0025874:39836-39855 Msa1425600:CDS 70.0%
AGGGAGGCGGTGGCTGATGG+TGG - tig0025874:39836-39855 Msa1425600:CDS 70.0%
ACATGCGGCGAGGGAGGCGG+TGG - tig0025874:39826-39845 Msa1425600:CDS 75.0%
GCGAGGGAGGCGGTGGCTGA+TGG - tig0025874:39833-39852 Msa1425600:CDS 75.0%
ACATGCGGCGAGGGAGGCGG+TGG - tig0025874:39826-39845 Msa1425600:CDS 75.0%
GCGAGGGAGGCGGTGGCTGA+TGG - tig0025874:39833-39852 Msa1425600:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0025874 gene 38483 39928 38483 ID=Msa1425600;Name=Msa1425600
tig0025874 mRNA 38483 39928 38483 ID=Msa1425600-mRNA-1;Parent=Msa1425600;Name=Msa1425600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|481
tig0025874 exon 38483 39928 38483 ID=Msa1425600-mRNA-1:exon:4381;Parent=Msa1425600-mRNA-1
tig0025874 CDS 38483 39928 38483 ID=Msa1425600-mRNA-1:cds;Parent=Msa1425600-mRNA-1
Gene Sequence

>Msa1425600

ATGTCTTCAGAAGACACAAAAATCAAACCAGAAATTCATGTCCTATTGGTTGCATTTTCAGCTCAAGGTCACATAAACCCTTTACTTAGACTAGGCAAATCCCTTTTAACCAAAGGCCTTAATGTCACACTTGCCACCACTGAATTAGTTTACCACCGTGTCTTCAAATCAACCACCACAGACACAGACACCGTCCCCACTTCTTACTCTACCAATGGAATCAACGTCCTGTTTTTCTCCGACGGCTTCGACATATCCCAAGGCCTTAAATCCCCTGATGAATACATGGAACTCATAGCCAAATTCGGTCCCATTAGTCTCACAAATCTCATCAAAAACAATTTCATCAACAACCCTTCCAAAAAATTAGCTTGCATTATCAATAACCCTTTTGTTCCTTGGGTAGCAAACGTGGCTTATGAATTCAATATCCCATGTGCTTGTCTTTGGATTCAACCTTGTACCCTTTACTCCATATACTATCGTTTCTACAACGAACTCAACCAGTTTCCAACCCTAGAAAACCCCGAAATCGACGTGGAATTACCCGGTCTTCCATTGCTGAAACCACAAGACCTTCCATCTTTTATTCTTCCATCAAATCCTATAAAAACCATGTCCGATGTTTTAGCTGAAATGTTCCAAGACATGAAGAAACTGAAATGGGTATTAGCAAATTCTTTCTACGAATTGGAAAAAGATGTCATTGATTCAATGGCTGAGATTTTCCCAATTACACCTGTAGGCCCATTAGTTCCACCTTCATTACTAGGTCAAGATCAAAAACAAGACGTTGGAATTGAAATGTGGACGCCACAAGATTCTTGCATGGAATGGCTTAACCAAAAGCCACCATCTTCAGTTATATATATTTCATTCGGAAGTCTCATCTTTTTATCAGAAAAACAAATGCAAAGCATAGCAAATGCATTGAAAAACAGTAACAAATATTTTCTCTGGGTGATGAAGAGTAAGGATATTGGAAATGAAAAAGTTCAGCTTTCTGAAAAATTCTTAGAAGAAACAAAAGAGAAAGGATTGGTTGTTACATGGTGTCCACAAACTAAGGTTTTGGTTCATCCTGCAATAGCGTGTTTCTTAACACACTGTGGATGGAATTCTACATTGGAAGCTGTAACTGCAGGAGTACCTATGATTGGTTATCCACAATGGACTGATCAACCAACAAATGCAATGCTTGTTTCTGATGTTTTTCGTATGGGGATTCGGTTGAAACAGGACAATGATGGGTTTGTTGAAAGTGATGAAGTTGAAAGAGCCATTGAAGAAATTGTTGGAGGTGAAAGGTCTGAAGTGTTTAAGAAAAATGCGTTGGAGCTGAAACATGCGGCGAGGGAGGCGGTGGCTGATGGTGGCTCTTCTGAGAGGAATATACAAAGATTCGTTGATGAAGTTCTTGTCAGTGCAATTCATAGTAATAATTGA
Protein sequence

>Msa1425600

MSSEDTKIKPEIHVLLVAFSAQGHINPLLRLGKSLLTKGLNVTLATTELVYHRVFKSTTTDTDTVPTSYSTNGINVLFFSDGFDISQGLKSPDEYMELIAKFGPISLTNLIKNNFINNPSKKLACIINNPFVPWVANVAYEFNIPCACLWIQPCTLYSIYYRFYNELNQFPTLENPEIDVELPGLPLLKPQDLPSFILPSNPIKTMSDVLAEMFQDMKKLKWVLANSFYELEKDVIDSMAEIFPITPVGPLVPPSLLGQDQKQDVGIEMWTPQDSCMEWLNQKPPSSVIYISFGSLIFLSEKQMQSIANALKNSNKYFLWVMKSKDIGNEKVQLSEKFLEETKEKGLVVTWCPQTKVLVHPAIACFLTHCGWNSTLEAVTAGVPMIGYPQWTDQPTNAMLVSDVFRMGIRLKQDNDGFVESDEVERAIEEIVGGERSEVFKKNALELKHAAREAVADGGSSERNIQRFVDEVLVSAIHSNN*