AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127240 MtrunA17_Chr1g0190941 97.582 579 14 0 1 579 1 579 0.0 1173
Msa0127240 MtrunA17_Chr3g0122151 31.380 529 324 10 41 562 82 578 6.71e-76 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127240 AT3G04870.3 83.119 545 86 1 35 579 20 558 0.0 965
Msa0127240 AT3G04870.1 83.119 545 86 1 35 579 20 558 0.0 965
Msa0127240 AT3G04870.4 83.119 545 86 1 35 579 20 558 0.0 965
Msa0127240 AT3G04870.2 83.119 545 86 1 35 579 20 558 0.0 965
Msa0127240 AT4G14210.1 32.179 491 294 9 72 554 93 552 1.50e-72 243
Msa0127240 AT4G14210.3 32.179 491 294 9 72 554 93 552 1.50e-72 243
Msa0127240 AT4G14210.2 32.179 491 294 9 72 554 93 552 1.50e-72 243

Find 184 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAGTAATCCTGTTCTT+TGG 0.221868 1_3:-56490007 Msa0127240:three_prime_UTR
ATCATTGGAGCTGGGCTTGC+TGG 0.256670 1_3:-56494743 Msa0127240:CDS
GGTTCGGCTTCGTTGCTCTT+TGG 0.276120 1_3:-56495883 Msa0127240:CDS
ATTGAGGGACATACGGAATT+TGG 0.279555 1_3:-56493646 Msa0127240:CDS
TTGTTTATACTTGTGAAATA+TGG 0.292318 1_3:-56489912 Msa0127240:three_prime_UTR
CTCTGCATCCCCACCTTAGA+TGG 0.296738 1_3:+56492865 None:intergenic
AGTGGCAAACAATGCAAATA+TGG 0.307203 1_3:+56493070 None:intergenic
CTTGAAATAATTTCTTCATT+TGG 0.308702 1_3:+56491355 None:intergenic
CTCTATCTGTGATGTACTTC+CGG 0.333710 1_3:+56492982 None:intergenic
AAACAAAAGAAAATAGAATT+AGG 0.335631 1_3:+56496043 None:intergenic
ATGAAGTAATCCTGTTCTTT+GGG 0.338750 1_3:-56490006 Msa0127240:three_prime_UTR
GAAAATAGAATTAGGCACTA+TGG 0.343123 1_3:+56496051 None:intergenic
AAGCTTAAAGTTGCTATCAT+TGG 0.354737 1_3:-56494758 Msa0127240:CDS
TTTAACCACAAATCAGCTTA+AGG 0.358549 1_3:-56493899 Msa0127240:intron
CGGAAGTACATCACAGATAG+AGG 0.360487 1_3:-56492981 Msa0127240:CDS
GACTTCTTTAATTCATTGTC+CGG 0.363391 1_3:-56495988 Msa0127240:CDS
GATCCAGTTGCCTATGCCCT+TGG 0.363674 1_3:-56493134 Msa0127240:CDS
TCATTTGGCAAGGGCATGTA+TGG 0.366332 1_3:+56491370 None:intergenic
CCCTCGATGTAATAGTCTTC+AGG 0.368691 1_3:+56492177 None:intergenic
CTTGTGTGTGTGAGTGGTAG+TGG 0.375006 1_3:+56496213 None:intergenic
ACGCGGAAATCACATTGAAA+TGG 0.376818 1_3:-56494406 Msa0127240:CDS
GCTGAAACAGGTTCCATCTA+AGG 0.377434 1_3:-56492878 Msa0127240:intron
GATGGGAGCACTTATGTTAC+AGG 0.378354 1_3:-56492819 Msa0127240:CDS
TGGTCATCTGTTGTTAAAAT+CGG 0.386009 1_3:-56491164 Msa0127240:CDS
AGAGGAACGATAAATTTATA+TGG 0.392972 1_3:+56489752 None:intergenic
AACCCAAGGGCATAGGCAAC+TGG 0.393599 1_3:+56493131 None:intergenic
ATCCAGTTGCCTATGCCCTT+GGG 0.393795 1_3:-56493133 Msa0127240:CDS
ACTCGTGCGTGTGCCACCTT+TGG 0.393846 1_3:+56493172 None:intergenic
GTCAACTGCAGTTGAACTCT+TGG 0.398799 1_3:-56494717 Msa0127240:CDS
TGAGTTGAGTCTAGTATAAG+AGG 0.398814 1_3:-56490087 Msa0127240:exon
TTATATGAAATTTGCGGAAA+AGG 0.400377 1_3:-56490041 Msa0127240:three_prime_UTR
GCGATGTCCCTGGAATTAAA+AGG 0.400605 1_3:-56492553 Msa0127240:CDS
TTCGGTCCTCGATAATGTTC+AGG 0.401785 1_3:+56494779 None:intergenic
TTCTGGCTCTTACACAAAAC+AGG 0.401890 1_3:-56491063 Msa0127240:intron
TCCGGAGGAAATAGTCCTTT+TGG 0.404642 1_3:+56494803 None:intergenic
ATGTCCCTCAATGCACCATC+TGG 0.410123 1_3:+56493657 None:intergenic
ATGGAAGGTGCAACCTTATC+CGG 0.415005 1_3:-56490218 Msa0127240:CDS
CCGTGTAATGGAGCCCCAAC+CGG 0.415657 1_3:+56493934 None:intergenic
TAGAAATGACAAGGGTATCT+TGG 0.416209 1_3:+56496107 None:intergenic
AATTACCTTAAGCTGATTTG+TGG 0.418452 1_3:+56493894 None:intergenic
TATTTCAAGAGTAGCGAAAC+AGG 0.418943 1_3:-56491341 Msa0127240:intron
TGAAGTTTGCCTGCCGGATA+AGG 0.421829 1_3:+56490205 None:intergenic
TCTAGTATAAGAGGAATTTA+CGG 0.422397 1_3:-56490078 Msa0127240:exon
TCAACAAGAGCTCTGACAAC+TGG 0.426518 1_3:+56493681 None:intergenic
CGCGGAAATCACATTGAAAT+GGG 0.426629 1_3:-56494405 Msa0127240:CDS
AACCTTTCAGCATCCGCAAA+AGG 0.426804 1_3:+56493033 None:intergenic
ATAAGAGGAATTTACGGATA+AGG 0.436575 1_3:-56490072 Msa0127240:exon
TATGTATCAGACTTATGATA+AGG 0.440470 1_3:-56493733 Msa0127240:intron
GTATCTTGGCTACGTAGGTT+GGG 0.441610 1_3:+56496121 None:intergenic
AAGGGAAGCCTCGGTCTTAG+TGG 0.441905 1_3:+56493052 None:intergenic
CTGAGATTGGTGAATTTGTC+TGG 0.442653 1_3:+56496152 None:intergenic
TATAAATTGTGATTCGTATC+CGG 0.445411 1_3:-56489885 Msa0127240:three_prime_UTR
ATGTCACACGCCCAAAGAAC+AGG 0.446083 1_3:+56489996 None:intergenic
ACTTCTAAACCTTGAGATGA+TGG 0.448031 1_3:+56491191 None:intergenic
CTCACACCTTTGTAAACAAA+GGG 0.458935 1_3:-56494135 Msa0127240:CDS
AAAGTTGCTATCATTGGAGC+TGG 0.460146 1_3:-56494752 Msa0127240:CDS
CCGGTTGGGGCTCCATTACA+CGG 0.461061 1_3:-56493934 Msa0127240:CDS
ATGATAGCAACTTTAAGCTT+CGG 0.461516 1_3:+56494761 None:intergenic
CTCAAGGTTTAGAAGTGACT+TGG 0.468098 1_3:-56491184 Msa0127240:CDS
TTGCTGGGGCTAGGTGGGTG+CGG 0.471726 1_3:-56494185 Msa0127240:intron
AATAATTTCTTCATTTGGCA+AGG 0.476215 1_3:+56491360 None:intergenic
ATATCAGCCTGCGATGTCCC+TGG 0.478030 1_3:-56492563 Msa0127240:intron
TCAGCCTATATCTGTGATGC+GGG 0.478524 1_3:-56490185 Msa0127240:CDS
CTGGCATTAACGATACATAA+TGG 0.478659 1_3:+56496339 None:intergenic
AATGCATTTATCCCGTGTAA+TGG 0.479235 1_3:+56493922 None:intergenic
TTTATTTGAGTGGCCCTATC+CGG 0.481283 1_3:-56493001 Msa0127240:CDS
GGGCCACTCAAATAAACATC+TGG 0.481392 1_3:+56493008 None:intergenic
GTAGATGCCACTATTGTCTC+TGG 0.481803 1_3:+56496320 None:intergenic
AGACACATAGCCACAAGGTT+CGG 0.488033 1_3:-56495899 Msa0127240:CDS
CCCATCAGAGTGGAGGGAAA+AGG 0.490856 1_3:-56492525 Msa0127240:CDS
GAAGCCGATGCTTATGTTGC+TGG 0.492399 1_3:-56492668 Msa0127240:intron
GTCCCTCACGGTACAGAGAT+TGG 0.495906 1_3:+56491141 None:intergenic
GGTATCTTGGCTACGTAGGT+TGG 0.498564 1_3:+56496120 None:intergenic
CTGTGATGTACTTCCGGATA+GGG 0.500954 1_3:+56492988 None:intergenic
ATCAGATGTGTTCTGACGCC+AGG 0.501293 1_3:-56491397 Msa0127240:intron
ACTCGTGCTGGAGATTCTGT+TGG 0.501847 1_3:-56495948 Msa0127240:CDS
AAATATGGTGAGCATGCAAC+GGG 0.505912 1_3:+56493085 None:intergenic
TCACTCTCTGCTACTCGTGC+TGG 0.509176 1_3:-56495960 Msa0127240:CDS
GTAGCAGAGAGTGAAGTTGC+CGG 0.509893 1_3:+56495969 None:intergenic
GAGCTTCTTGCACAGTCTAA+AGG 0.512258 1_3:-56490137 Msa0127240:CDS
TCACCAGATGTTTATTTGAG+TGG 0.514814 1_3:-56493011 Msa0127240:CDS
TTGGGAGGAGATGCTGAGAT+TGG 0.517534 1_3:+56496139 None:intergenic
GTCAAGTTATATGAAATTTG+CGG 0.517734 1_3:-56490047 Msa0127240:three_prime_UTR
AAGGGCATGTATGGATCTCC+TGG 0.521092 1_3:+56491379 None:intergenic
TACAGGACTTTCCTTGTCAA+AGG 0.522929 1_3:-56492802 Msa0127240:intron
CGTGTAATGGAGCCCCAACC+GGG 0.524152 1_3:+56493935 None:intergenic
CCTCGATAATGTTCAGGCTC+CGG 0.524827 1_3:+56494785 None:intergenic
GTACAGTGATCACTTCCTCC+AGG 0.527624 1_3:+56489800 None:intergenic
GATGTGAAAACCGACTTAGT+TGG 0.528115 1_3:+56496018 None:intergenic
TGATCCAGATGGTGCATTGA+GGG 0.528957 1_3:-56493661 Msa0127240:CDS
TCAGACTGGTTTATGTCCAA+AGG 0.529696 1_3:-56493188 Msa0127240:CDS
GCAGTTGAACTCTTGGATCA+AGG 0.530786 1_3:-56494710 Msa0127240:CDS
AGATAATAATGAGATAATCC+TGG 0.532859 1_3:-56489818 Msa0127240:three_prime_UTR
ACTTTCATGCCAGCACCAAA+AGG 0.533509 1_3:-56494818 Msa0127240:intron
TCACTTATGTTGTTATGTGT+AGG 0.537050 1_3:+56496082 None:intergenic
ATAATTTCTTCATTTGGCAA+GGG 0.539005 1_3:+56491361 None:intergenic
ATAGACAATAATAATAGATG+TGG 0.539704 1_3:-56496242 Msa0127240:five_prime_UTR
TGCAACTCAGATACAATGGT+TGG 0.542316 1_3:-56492454 Msa0127240:CDS
CATCCGCAAAAGGGAAGCCT+CGG 0.544863 1_3:+56493043 None:intergenic
CTTTATGATAAATCTGCTGA+TGG 0.545887 1_3:-56492837 Msa0127240:CDS
ACTTTAGTTTGTTAGTTGAG+AGG 0.548901 1_3:+56496176 None:intergenic
GTCAATAAACCCAAGGGCAT+AGG 0.550109 1_3:+56493124 None:intergenic
ACCTTTCAGCATCCGCAAAA+GGG 0.553238 1_3:+56493034 None:intergenic
AGGCAACTGAAGAAAGCTAC+CGG 0.553730 1_3:-56492267 Msa0127240:CDS
TCTGTGATGTACTTCCGGAT+AGG 0.554625 1_3:+56492987 None:intergenic
ATGGTGCATTGAGGGACATA+CGG 0.554758 1_3:-56493653 Msa0127240:CDS
GCAACTCAGATACAATGGTT+GGG 0.557255 1_3:-56492453 Msa0127240:CDS
ATTGTTAGTATTGCAGCAAG+TGG 0.561102 1_3:-56489937 Msa0127240:three_prime_UTR
CTGAGTTGCACTGTGACCAC+AGG 0.565771 1_3:+56492467 None:intergenic
ACCAAAAGGACTATTTCCTC+CGG 0.566476 1_3:-56494804 Msa0127240:CDS
AAGTTGCTATCATTGGAGCT+GGG 0.567873 1_3:-56494751 Msa0127240:CDS
TTTAATTCCAGGGACATCGC+AGG 0.571144 1_3:+56492556 None:intergenic
ATAGGCTGAAGTTTGCCTGC+CGG 0.573360 1_3:+56490199 None:intergenic
TCGTTGTTCCCATCATCTCA+AGG 0.573643 1_3:-56491200 Msa0127240:CDS
ATCTCATTATTATCTTAATG+CGG 0.574586 1_3:+56489826 None:intergenic
ACTCACACCTTTGTAAACAA+AGG 0.576174 1_3:-56494136 Msa0127240:CDS
CAAATATGGTGAGCATGCAA+CGG 0.576514 1_3:+56493084 None:intergenic
GCATTAAGAATGACAAAGAC+CGG 0.577256 1_3:+56489866 None:intergenic
GTTAATGCCAGAGACAATAG+TGG 0.578029 1_3:-56496327 Msa0127240:five_prime_UTR
TTGTGACTTGTGTGTGTGAG+TGG 0.579486 1_3:+56496207 None:intergenic
TGAATTAAAGAAGTCATCAT+CGG 0.582427 1_3:+56495996 None:intergenic
GAAACAGGTTCCATCTAAGG+TGG 0.582717 1_3:-56492875 Msa0127240:intron
GGCTACCGAGAAGAAAATTG+TGG 0.583615 1_3:-56492690 Msa0127240:CDS
AGAATTGGTGGCATTGCGGA+AGG 0.584021 1_3:-56490159 Msa0127240:CDS
CTTCTAAACCTTGAGATGAT+GGG 0.585413 1_3:+56491192 None:intergenic
TAGACAATAATAATAGATGT+GGG 0.585443 1_3:-56496241 Msa0127240:five_prime_UTR
TTCAGCCTATATCTGTGATG+CGG 0.586370 1_3:-56490186 Msa0127240:CDS
TGCAGAATCTAGAAATGTCA+AGG 0.588922 1_3:-56492421 Msa0127240:intron
AATAACATATACGAACTCGT+TGG 0.589049 1_3:-56492494 Msa0127240:CDS
AGAGCTCTTGTTGATCCAGA+TGG 0.589565 1_3:-56493672 Msa0127240:CDS
TGGACTCAGTGCAAGAGCTA+CGG 0.590603 1_3:+56493701 None:intergenic
ATAGAGAAGGTTGTCTAACC+CGG 0.591839 1_3:+56492248 None:intergenic
CGGTTGGGGCTCCATTACAC+GGG 0.591933 1_3:-56493933 Msa0127240:CDS
AAACAGGTTCCATCTAAGGT+GGG 0.592718 1_3:-56492874 Msa0127240:intron
GGTCTAAATGGATCTTTACC+AGG 0.593355 1_3:+56491119 None:intergenic
CGATAATGTTCAGGCTCCGG+AGG 0.594301 1_3:+56494788 None:intergenic
GGATAACAATCTACTTGTGA+AGG 0.594376 1_3:-56494164 Msa0127240:CDS
GGAAGTACATCACAGATAGA+GGG 0.594388 1_3:-56492980 Msa0127240:CDS
TTGATCCAGATGGTGCATTG+AGG 0.597130 1_3:-56493662 Msa0127240:CDS
AAGGTGCAACCTTATCCGGC+AGG 0.600316 1_3:-56490214 Msa0127240:CDS
ATTGTTTGCCACTAAGACCG+AGG 0.602157 1_3:-56493060 Msa0127240:CDS
CGCAAAGACACATAGCCACA+AGG 0.605752 1_3:-56495904 Msa0127240:CDS
TATCACAGTCAATAAACCCA+AGG 0.605846 1_3:+56493117 None:intergenic
GATTACATAGACAGCATGGA+AGG 0.607021 1_3:-56490233 Msa0127240:CDS
GTTACTCCCATCAGAGTGGA+GGG 0.607848 1_3:-56492531 Msa0127240:CDS
TCTCTGTACCGTGAGGGACC+TGG 0.607923 1_3:-56491137 Msa0127240:CDS
GGGAAGAATTGGTGGCATTG+CGG 0.610606 1_3:-56490163 Msa0127240:CDS
ACTCTTGGATCAAGGACATG+AGG 0.611361 1_3:-56494702 Msa0127240:intron
TTTATGATAAATCTGCTGAT+GGG 0.613858 1_3:-56492836 Msa0127240:CDS
CAGCCTATATCTGTGATGCG+GGG 0.614951 1_3:-56490184 Msa0127240:CDS
GACTATTACATCGAGGGACA+AGG 0.615874 1_3:-56492171 Msa0127240:CDS
CCTGAAGACTATTACATCGA+GGG 0.618138 1_3:-56492177 Msa0127240:CDS
AACAGGTTCCATCTAAGGTG+GGG 0.618751 1_3:-56492873 Msa0127240:intron
ATGTGTCTTTGCGAAACGTG+TGG 0.618912 1_3:+56495914 None:intergenic
ATCACAGTCAATAAACCCAA+GGG 0.619021 1_3:+56493118 None:intergenic
AGCCTATATCTGTGATGCGG+GGG 0.619252 1_3:-56490183 Msa0127240:CDS
GTGTAGGAATAGAAATGACA+AGG 0.624854 1_3:+56496098 None:intergenic
GACTGGTTTATGTCCAAAGG+TGG 0.624860 1_3:-56493185 Msa0127240:CDS
CTAACCGTTGGTACTCATGT+CGG 0.626829 1_3:+56495848 None:intergenic
GGTTACTCCCATCAGAGTGG+AGG 0.630867 1_3:-56492532 Msa0127240:CDS
TCAGGATTACATAGACAGCA+TGG 0.632080 1_3:-56490237 Msa0127240:intron
GTTTCCGACATGAGTACCAA+CGG 0.632950 1_3:-56495852 Msa0127240:intron
CTAACCAGCAACATAAGCAT+CGG 0.636070 1_3:+56492664 None:intergenic
GGCCAATCTCTGTACCGTGA+GGG 0.636229 1_3:-56491143 Msa0127240:CDS
GATCTTTACCAGGTCCCTCA+CGG 0.638059 1_3:+56491129 None:intergenic
TGTAGGAATAGAAATGACAA+GGG 0.638823 1_3:+56496099 None:intergenic
TGTGTCTTTGCGAAACGTGT+GGG 0.639468 1_3:+56495915 None:intergenic
GGCAACTGAAGAAAGCTACC+GGG 0.645085 1_3:-56492266 Msa0127240:CDS
CGAACTCGTTGGAGTTCCTG+TGG 0.646603 1_3:-56492483 Msa0127240:CDS
GGAAGTGATCACTGTACAAG+CGG 0.648807 1_3:-56489794 Msa0127240:three_prime_UTR
TCTTGGCTACGTAGGTTGGG+AGG 0.658118 1_3:+56496124 None:intergenic
ACAGTGCAACTCAGATACAA+TGG 0.663291 1_3:-56492458 Msa0127240:CDS
GAAGTACATCACAGATAGAG+GGG 0.664359 1_3:-56492979 Msa0127240:CDS
AGCAACGAAGCCGAACCTTG+TGG 0.668845 1_3:+56495889 None:intergenic
CAAGGGTATCTTGGCTACGT+AGG 0.677453 1_3:+56496116 None:intergenic
CGGCCAATCTCTGTACCGTG+AGG 0.680928 1_3:-56491144 Msa0127240:CDS
AAAGGTTACTCCCATCAGAG+TGG 0.682957 1_3:-56492535 Msa0127240:CDS
TCCTGAAGACTATTACATCG+AGG 0.684522 1_3:-56492178 Msa0127240:CDS
AAAGTATATCACCTTTGACA+AGG 0.686346 1_3:+56492791 None:intergenic
CACACCTTTGTAAACAAAGG+GGG 0.694534 1_3:-56494133 Msa0127240:CDS
CCGGAGCCTGAACATTATCG+AGG 0.697521 1_3:-56494785 Msa0127240:CDS
AAGTACATCACAGATAGAGG+GGG 0.702330 1_3:-56492978 Msa0127240:CDS
TCACACCTTTGTAAACAAAG+GGG 0.705760 1_3:-56494134 Msa0127240:CDS
TAATAATGAGATAATCCTGG+AGG 0.715134 1_3:-56489815 Msa0127240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAAAAAAAAAAAGT+TGG + chr1_3:56490316-56490335 None:intergenic 10.0%
!!! ATTGTAATTGTATTTATTTT+TGG + chr1_3:56490807-56490826 None:intergenic 10.0%
!! ATATCATAATATATTGAAAT+TGG - chr1_3:56491488-56491507 Msa0127240:intron 10.0%
!! AAATATCATTAAAAGAATAA+CGG + chr1_3:56494830-56494849 None:intergenic 10.0%
!! TTCCATTAACTAAAAAATAT+AGG - chr1_3:56489829-56489848 Msa0127240:three_prime_UTR 15.0%
!! AAACAAAAGAAAATAGAATT+AGG + chr1_3:56490083-56490102 None:intergenic 15.0%
!! AAAAAAAAAAAAAGTTGGAA+GGG + chr1_3:56490311-56490330 None:intergenic 15.0%
!!! TACATAAAACCTTATTTATT+TGG - chr1_3:56490973-56490992 Msa0127240:intron 15.0%
!! AATAATCAGGAAAATTTATT+TGG + chr1_3:56492536-56492555 None:intergenic 15.0%
!!! TTTTCCTATAAGTATTTTTT+TGG + chr1_3:56494254-56494273 None:intergenic 15.0%
!! AAAAAAATACTTATAGGAAA+AGG - chr1_3:56494253-56494272 Msa0127240:intron 15.0%
!! AATATTATATGAACATATGT+TGG + chr1_3:56494664-56494683 None:intergenic 15.0%
!! AATAAAATAACAAACTTAGA+GGG + chr1_3:56494700-56494719 None:intergenic 15.0%
!! AAATAAAATAACAAACTTAG+AGG + chr1_3:56494701-56494720 None:intergenic 15.0%
!! GACATATCATAAATATTATA+TGG - chr1_3:56495444-56495463 Msa0127240:intron 15.0%
!! TATCATAAATATTATATGGA+TGG - chr1_3:56495448-56495467 Msa0127240:intron 15.0%
!!! GTCCTATATTTTTTAGTTAA+TGG + chr1_3:56489834-56489853 None:intergenic 20.0%
!! ATAGACAATAATAATAGATG+TGG - chr1_3:56489881-56489900 Msa0127240:three_prime_UTR 20.0%
!! TAGACAATAATAATAGATGT+GGG - chr1_3:56489882-56489901 Msa0127240:three_prime_UTR 20.0%
!! CAAAAAAAAAAAAAGTTGGA+AGG + chr1_3:56490312-56490331 None:intergenic 20.0%
!!! TGTATTTATTTTTGGAAACT+TGG + chr1_3:56490799-56490818 None:intergenic 20.0%
!! ACAATTACAATATGAATGTT+AGG - chr1_3:56490816-56490835 Msa0127240:intron 20.0%
!! CAATTACAATATGAATGTTA+GGG - chr1_3:56490817-56490836 Msa0127240:intron 20.0%
!! TAAGCTTATCCAAATAAATA+AGG + chr1_3:56490985-56491004 None:intergenic 20.0%
!! TTTGGATAAGCTTAAAAATA+AGG - chr1_3:56490991-56491010 Msa0127240:intron 20.0%
!!! TTTGTCTATTTTTGTATTGA+TGG - chr1_3:56491458-56491477 Msa0127240:intron 20.0%
!! ATTGAAATTGGATGTTATTA+TGG - chr1_3:56491500-56491519 Msa0127240:intron 20.0%
!!! ATGGATTGATATGATAAAAA+TGG + chr1_3:56491895-56491914 None:intergenic 20.0%
!! TTATCATATCAATCCATAAT+CGG - chr1_3:56491898-56491917 Msa0127240:intron 20.0%
!! AAGAAAAATTAATCCGATTA+TGG + chr1_3:56491914-56491933 None:intergenic 20.0%
!! TTATGAATAAACGATAGTTT+CGG - chr1_3:56492115-56492134 Msa0127240:intron 20.0%
!! AATTTGGATAGTTATAGTAA+TGG + chr1_3:56493199-56493218 None:intergenic 20.0%
!!! ATTTAAAATCTTTACATGCT+TGG - chr1_3:56493364-56493383 Msa0127240:intron 20.0%
!! GAAATAAACATTAAGACTTT+CGG + chr1_3:56493409-56493428 None:intergenic 20.0%
!!! ATATTTTGTTTTCAAGAACA+AGG - chr1_3:56493769-56493788 Msa0127240:intron 20.0%
!! AATTACACAATAATGATCAA+AGG + chr1_3:56493807-56493826 None:intergenic 20.0%
!!! GAACTTATATTTAAGATGAT+CGG - chr1_3:56494075-56494094 Msa0127240:intron 20.0%
!! CTTTCCAAAAAAATACTTAT+AGG - chr1_3:56494247-56494266 Msa0127240:intron 20.0%
!! AATACTTTATAAGTTCCTAT+TGG - chr1_3:56494470-56494489 Msa0127240:intron 20.0%
!! CTTGAAATAATTTCTTCATT+TGG + chr1_3:56494771-56494790 None:intergenic 20.0%
!!! TTCATTATCGATTTAGTAAA+TGG - chr1_3:56494849-56494868 Msa0127240:intron 20.0%
!!! TGATTTTAAAAATCGTTATC+AGG - chr1_3:56494895-56494914 Msa0127240:intron 20.0%
!! TCTATAATTTCTTGCATATA+TGG - chr1_3:56495213-56495232 Msa0127240:intron 20.0%
!! GCATATGAAAAAAAAATACA+AGG - chr1_3:56495511-56495530 Msa0127240:intron 20.0%
!! CTAGATAAAATAATAGAAGT+CGG + chr1_3:56495841-56495860 None:intergenic 20.0%
!! TTGTTTATACTTGTGAAATA+TGG - chr1_3:56496211-56496230 Msa0127240:five_prime_UTR 20.0%
!! ATCTCATTATTATCTTAATG+CGG + chr1_3:56496300-56496319 None:intergenic 20.0%
!!! TTTTGTTTTTCCAACTAAGT+CGG - chr1_3:56490095-56490114 Msa0127240:CDS 25.0%
! TGAATTAAAGAAGTCATCAT+CGG + chr1_3:56490130-56490149 None:intergenic 25.0%
!!! TTTTCTAGCATCATGAATTT+TGG - chr1_3:56490343-56490362 Msa0127240:intron 25.0%
!! TGCTTATGTGAAAACAATTT+TGG + chr1_3:56490456-56490475 None:intergenic 25.0%
! CTTAGAAAGCTTATGTAAAT+CGG - chr1_3:56490483-56490502 Msa0127240:intron 25.0%
! TGTAAATCGGATAATTCATA+AGG - chr1_3:56490496-56490515 Msa0127240:intron 25.0%
! AAAAATAAGTCAATCCAAAC+AGG + chr1_3:56490843-56490862 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr1_3:56490955-56490974 None:intergenic 25.0%
!! ATTTTCACATGAATTGTTGA+TGG - chr1_3:56491094-56491113 Msa0127240:CDS 25.0%
!! TTTTCACATGAATTGTTGAT+GGG - chr1_3:56491095-56491114 Msa0127240:CDS 25.0%
!! GATTTTGCATGAATTGTTAA+TGG - chr1_3:56491140-56491159 Msa0127240:CDS 25.0%
!!! GAATTGTTAATGGATTTTGT+TGG - chr1_3:56491150-56491169 Msa0127240:CDS 25.0%
!!! TGTTTACCTTTTTCAATAGT+CGG + chr1_3:56491780-56491799 None:intergenic 25.0%
!!! TATTCTCTTTCCCTATTTTT+TGG - chr1_3:56491837-56491856 Msa0127240:intron 25.0%
! TACAAGTATGCCAAAAAATA+GGG + chr1_3:56491850-56491869 None:intergenic 25.0%
! TATGTATCAGACTTATGATA+AGG - chr1_3:56492390-56492409 Msa0127240:intron 25.0%
!! GTGTAAGAGGATAATATTTT+TGG - chr1_3:56492503-56492522 Msa0127240:CDS 25.0%
! CAGGAAAATTTATTTGGAAA+TGG + chr1_3:56492530-56492549 None:intergenic 25.0%
! TTTATGATAAATCTGCTGAT+GGG - chr1_3:56493287-56493306 Msa0127240:intron 25.0%
!!! TAAGAGCATTTTTGTAAGTT+AGG - chr1_3:56494406-56494425 Msa0127240:CDS 25.0%
! ATAATTTCTTCATTTGGCAA+GGG + chr1_3:56494765-56494784 None:intergenic 25.0%
! AATAATTTCTTCATTTGGCA+AGG + chr1_3:56494766-56494785 None:intergenic 25.0%
!! GAAAGAAAGAAATTTTTCAC+TGG + chr1_3:56495043-56495062 None:intergenic 25.0%
! GTGAAAAATTTCTTTCTTTC+TGG - chr1_3:56495043-56495062 Msa0127240:intron 25.0%
!! TTTTACTCGTAATAGTTTAC+TGG - chr1_3:56495489-56495508 Msa0127240:intron 25.0%
! AATCAACTGGAAAATAAAGT+TGG + chr1_3:56495719-56495738 None:intergenic 25.0%
! AGAAAACATATTGTAATTGC+AGG + chr1_3:56495773-56495792 None:intergenic 25.0%
! TCTAGTATAAGAGGAATTTA+CGG - chr1_3:56496045-56496064 Msa0127240:five_prime_UTR 25.0%
! GTCAAGTTATATGAAATTTG+CGG - chr1_3:56496076-56496095 Msa0127240:five_prime_UTR 25.0%
! TTATATGAAATTTGCGGAAA+AGG - chr1_3:56496082-56496101 Msa0127240:five_prime_UTR 25.0%
! TATAAATTGTGATTCGTATC+CGG - chr1_3:56496238-56496257 Msa0127240:five_prime_UTR 25.0%
! AGATAATAATGAGATAATCC+TGG - chr1_3:56496305-56496324 Msa0127240:five_prime_UTR 25.0%
!! ACTTTAGTTTGTTAGTTGAG+AGG + chr1_3:56489950-56489969 None:intergenic 30.0%
TGTAGGAATAGAAATGACAA+GGG + chr1_3:56490027-56490046 None:intergenic 30.0%
TCACTTATGTTGTTATGTGT+AGG + chr1_3:56490044-56490063 None:intergenic 30.0%
GAAAATAGAATTAGGCACTA+TGG + chr1_3:56490075-56490094 None:intergenic 30.0%
GACTTCTTTAATTCATTGTC+CGG - chr1_3:56490135-56490154 Msa0127240:CDS 30.0%
CGATTTACATAAGCTTTCTA+AGG + chr1_3:56490485-56490504 None:intergenic 30.0%
!! ATTTTTGGAAACTTGGTATC+CGG + chr1_3:56490792-56490811 None:intergenic 30.0%
!! TCGTTTTGTTCGTATATCAA+GGG + chr1_3:56491030-56491049 None:intergenic 30.0%
!! TTCGTTTTGTTCGTATATCA+AGG + chr1_3:56491031-56491050 None:intergenic 30.0%
TATACGAACAAAACGAACTA+TGG - chr1_3:56491034-56491053 Msa0127240:intron 30.0%
! ATGATATTCAGGTTCTACAT+GGG - chr1_3:56491194-56491213 Msa0127240:CDS 30.0%
TAGGAAATGTTACATAGAGT+TGG + chr1_3:56491260-56491279 None:intergenic 30.0%
! TTGTGTCAAATTTTCAGCTT+AGG + chr1_3:56491279-56491298 None:intergenic 30.0%
ATGATAGCAACTTTAAGCTT+CGG + chr1_3:56491365-56491384 None:intergenic 30.0%
AAGCTTAAAGTTGCTATCAT+TGG - chr1_3:56491365-56491384 Msa0127240:CDS 30.0%
! TGTGTTTTCCTTTGTAATCA+TGG - chr1_3:56491570-56491589 Msa0127240:intron 30.0%
ATTTAGCACCATGATTACAA+AGG + chr1_3:56491581-56491600 None:intergenic 30.0%
AATACATTAGCCAGATATCT+TGG + chr1_3:56491607-56491626 None:intergenic 30.0%
! TTTTCAATGTTCTCTCATTC+AGG - chr1_3:56491636-56491655 Msa0127240:intron 30.0%
! TACGAGTCAAGATCTTTTAT+TGG - chr1_3:56491667-56491686 Msa0127240:intron 30.0%
! TCTTTTCCGACTATTGAAAA+AGG - chr1_3:56491771-56491790 Msa0127240:intron 30.0%
GTACAAGTATGCCAAAAAAT+AGG + chr1_3:56491851-56491870 None:intergenic 30.0%
AATGTGAACAAAATGAAGCA+AGG + chr1_3:56492054-56492073 None:intergenic 30.0%
TTTAACCACAAATCAGCTTA+AGG - chr1_3:56492224-56492243 Msa0127240:CDS 30.0%
!! AATTACCTTAAGCTGATTTG+TGG + chr1_3:56492232-56492251 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG + chr1_3:56492699-56492718 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG + chr1_3:56492746-56492765 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG + chr1_3:56492699-56492718 None:intergenic 30.0%
AAGACTAGAATTCGACATTA+AGG + chr1_3:56492880-56492899 None:intergenic 30.0%
CTATTAAATGCATTTCTTGC+AGG - chr1_3:56492904-56492923 Msa0127240:intron 30.0%
CACGAGTATTCAAAAAATGT+GGG - chr1_3:56492967-56492986 Msa0127240:intron 30.0%
AATGAATGAGAACCTACATA+GGG + chr1_3:56493225-56493244 None:intergenic 30.0%
CTTTATGATAAATCTGCTGA+TGG - chr1_3:56493286-56493305 Msa0127240:intron 30.0%
AAAGTATATCACCTTTGACA+AGG + chr1_3:56493335-56493354 None:intergenic 30.0%
GTCTTAATGTTTATTTCCTC+AGG - chr1_3:56493412-56493431 Msa0127240:intron 30.0%
TGAGATCAATACAAAAACCA+GGG + chr1_3:56493496-56493515 None:intergenic 30.0%
ATGAGATCAATACAAAAACC+AGG + chr1_3:56493497-56493516 None:intergenic 30.0%
ATCAAGTCAATGATAGGTTA+AGG + chr1_3:56493542-56493561 None:intergenic 30.0%
AATAACATATACGAACTCGT+TGG - chr1_3:56493629-56493648 Msa0127240:intron 30.0%
AAAGCAAGAAAAATCTGCAT+CGG + chr1_3:56493905-56493924 None:intergenic 30.0%
TAATTCATGTAGTGCTAGTT+TGG - chr1_3:56494219-56494238 Msa0127240:intron 30.0%
TAGGAACCAAATACTTACAA+TGG - chr1_3:56494425-56494444 Msa0127240:CDS 30.0%
AGGAACCAAATACTTACAAT+GGG - chr1_3:56494426-56494445 Msa0127240:CDS 30.0%
ATAGTCCCATTGTAAGTATT+TGG + chr1_3:56494434-56494453 None:intergenic 30.0%
CTTTATTAAACGCTACCAAT+AGG + chr1_3:56494488-56494507 None:intergenic 30.0%
ATTGTTGAAAATGACAACAG+TGG + chr1_3:56494526-56494545 None:intergenic 30.0%
TTGCAATGAGAGGAAAAAAA+AGG + chr1_3:56494639-56494658 None:intergenic 30.0%
TGGTCATCTGTTGTTAAAAT+CGG - chr1_3:56494959-56494978 Msa0127240:intron 30.0%
! AATTTTTCACTGGTGTCTTT+TGG + chr1_3:56495033-56495052 None:intergenic 30.0%
AAACATATGAGACCTTATAG+AGG - chr1_3:56495180-56495199 Msa0127240:intron 30.0%
! ATGAGGTATTTCACATAAGA+TGG + chr1_3:56495359-56495378 None:intergenic 30.0%
! ATTTCCTCGTCACATATTTT+AGG - chr1_3:56495387-56495406 Msa0127240:intron 30.0%
AAAACCTAAAATATGTGACG+AGG + chr1_3:56495394-56495413 None:intergenic 30.0%
TAACAGAAGTTTGTATTAGC+AGG - chr1_3:56495559-56495578 Msa0127240:intron 30.0%
TAATATTCCACTTTCAACTG+AGG - chr1_3:56495628-56495647 Msa0127240:intron 30.0%
GCTTGCTCAAATTTATCAAA+CGG - chr1_3:56495656-56495675 Msa0127240:intron 30.0%
CTGAAATGTTTAATCTGTTC+AGG - chr1_3:56495868-56495887 Msa0127240:CDS 30.0%
ATAAGAGGAATTTACGGATA+AGG - chr1_3:56496051-56496070 Msa0127240:five_prime_UTR 30.0%
TATGAAGTAATCCTGTTCTT+TGG - chr1_3:56496116-56496135 Msa0127240:five_prime_UTR 30.0%
ATGAAGTAATCCTGTTCTTT+GGG - chr1_3:56496117-56496136 Msa0127240:five_prime_UTR 30.0%
TAATAATGAGATAATCCTGG+AGG - chr1_3:56496308-56496327 Msa0127240:five_prime_UTR 30.0%
CTGGCATTAACGATACATAA+TGG + chr1_3:56489787-56489806 None:intergenic 35.0%
!! TAGAAATGACAAGGGTATCT+TGG + chr1_3:56490019-56490038 None:intergenic 35.0%
GTGTAGGAATAGAAATGACA+AGG + chr1_3:56490028-56490047 None:intergenic 35.0%
GGAAATCTATTACTAACCGT+TGG + chr1_3:56490290-56490309 None:intergenic 35.0%
!! ACGTTTAATTTTGCTGTGCT+TGG - chr1_3:56490370-56490389 Msa0127240:intron 35.0%
AGAGTAGAGTAGCACATTAT+GGG + chr1_3:56490590-56490609 None:intergenic 35.0%
TAGAGTAGAGTAGCACATTA+TGG + chr1_3:56490591-56490610 None:intergenic 35.0%
AATTACAATATGAAACCCCC+TGG - chr1_3:56490618-56490637 Msa0127240:intron 35.0%
ATTACAATATGAAACCCCCT+GGG - chr1_3:56490619-56490638 Msa0127240:intron 35.0%
AGATGTTGTAAGACAGACTT+GGG - chr1_3:56490649-56490668 Msa0127240:intron 35.0%
GGACAAAAATTGTTAACACC+CGG + chr1_3:56490699-56490718 None:intergenic 35.0%
CTAAGGACTAACTAATCTGA+GGG + chr1_3:56490768-56490787 None:intergenic 35.0%
!! CGTTTTGTTCGTATATCAAG+GGG + chr1_3:56491029-56491048 None:intergenic 35.0%
! GATGATATTCAGGTTCTACA+TGG - chr1_3:56491193-56491212 Msa0127240:CDS 35.0%
! GAGTCAAGATCTTTTATTGG+TGG - chr1_3:56491670-56491689 Msa0127240:intron 35.0%
!! TCTTTTATTGGTGGCAAAGT+TGG - chr1_3:56491679-56491698 Msa0127240:intron 35.0%
!! GGTTCTTTTGTTGATAAACG+CGG - chr1_3:56491700-56491719 Msa0127240:intron 35.0%
! ATGGGATTGCATGTTTTCTT+TGG - chr1_3:56491736-56491755 Msa0127240:intron 35.0%
AAAGAGAATACGACTGAAGA+AGG + chr1_3:56491827-56491846 None:intergenic 35.0%
! TTAATTTTTCTTCGCCTTGC+TGG - chr1_3:56491922-56491941 Msa0127240:intron 35.0%
! TAATTTTTCTTCGCCTTGCT+GGG - chr1_3:56491923-56491942 Msa0127240:intron 35.0%
GGATAACAATCTACTTGTGA+AGG - chr1_3:56491959-56491978 Msa0127240:intron 35.0%
ACTCACACCTTTGTAAACAA+AGG - chr1_3:56491987-56492006 Msa0127240:intron 35.0%
CTCACACCTTTGTAAACAAA+GGG - chr1_3:56491988-56492007 Msa0127240:intron 35.0%
TCACACCTTTGTAAACAAAG+GGG - chr1_3:56491989-56492008 Msa0127240:intron 35.0%
TCATAAAAGTAGTGCTCTGA+TGG + chr1_3:56492101-56492120 None:intergenic 35.0%
AATGCATTTATCCCGTGTAA+TGG + chr1_3:56492204-56492223 None:intergenic 35.0%
AGCTAAGGAGACAAATAATC+AGG + chr1_3:56492549-56492568 None:intergenic 35.0%
!! TGTCTCCTTAGCTTTGTATT+TGG - chr1_3:56492556-56492575 Msa0127240:CDS 35.0%
GCATGTGTGATGTGAATATT+TGG + chr1_3:56492622-56492641 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG - chr1_3:56492649-56492668 Msa0127240:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG + chr1_3:56492686-56492705 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG + chr1_3:56492729-56492748 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG - chr1_3:56492649-56492668 Msa0127240:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG - chr1_3:56492660-56492679 Msa0127240:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG + chr1_3:56492686-56492705 None:intergenic 35.0%
ATACTGACAAACATGGTACA+AGG + chr1_3:56492853-56492872 None:intergenic 35.0%
ACTAGAATTCGACATTAAGG+CGG + chr1_3:56492877-56492896 None:intergenic 35.0%
GCACGAGTATTCAAAAAATG+TGG - chr1_3:56492966-56492985 Msa0127240:intron 35.0%
ATCACAGTCAATAAACCCAA+GGG + chr1_3:56493008-56493027 None:intergenic 35.0%
TATCACAGTCAATAAACCCA+AGG + chr1_3:56493009-56493028 None:intergenic 35.0%
AGTGGCAAACAATGCAAATA+TGG + chr1_3:56493056-56493075 None:intergenic 35.0%
TCACCAGATGTTTATTTGAG+TGG - chr1_3:56493112-56493131 Msa0127240:CDS 35.0%
ATCCAAATTTCTCCCTATGT+AGG - chr1_3:56493210-56493229 Msa0127240:intron 35.0%
AACCTACATAGGGAGAAATT+TGG + chr1_3:56493215-56493234 None:intergenic 35.0%
CAATGAATGAGAACCTACAT+AGG + chr1_3:56493226-56493245 None:intergenic 35.0%
TTCTCATTCATTGCTGAAAC+AGG - chr1_3:56493233-56493252 Msa0127240:intron 35.0%
GCTGATATCAAGTCAATGAT+AGG + chr1_3:56493548-56493567 None:intergenic 35.0%
!! GGAGTAACCTTTTAATTCCA+GGG + chr1_3:56493580-56493599 None:intergenic 35.0%
TGCAGAATCTAGAAATGTCA+AGG - chr1_3:56493702-56493721 Msa0127240:CDS 35.0%
! AGAAATGTCAAGGTACTTCT+CGG - chr1_3:56493712-56493731 Msa0127240:CDS 35.0%
!! AAGGTACTTCTCGGAATTTT+AGG - chr1_3:56493721-56493740 Msa0127240:CDS 35.0%
AAGCAAGAAAAATCTGCATC+GGG + chr1_3:56493904-56493923 None:intergenic 35.0%
TCAACGTAAACATCACTTAC+TGG + chr1_3:56493987-56494006 None:intergenic 35.0%
AGAGTCTTCTGTGAGTTTAT+TGG - chr1_3:56494030-56494049 Msa0127240:intron 35.0%
GAGTCTTCTGTGAGTTTATT+GGG - chr1_3:56494031-56494050 Msa0127240:intron 35.0%
ATTGTTGGAAATGGTTACAG+TGG + chr1_3:56494124-56494143 None:intergenic 35.0%
TGAGCGTAAATTGTTGGAAA+TGG + chr1_3:56494133-56494152 None:intergenic 35.0%
GTGATTTGAGCGTAAATTGT+TGG + chr1_3:56494139-56494158 None:intergenic 35.0%
TGCATAACATACTTAGTCGT+GGG + chr1_3:56494161-56494180 None:intergenic 35.0%
TTGCATAACATACTTAGTCG+TGG + chr1_3:56494162-56494181 None:intergenic 35.0%
CGACTAAGTATGTTATGCAA+TGG - chr1_3:56494162-56494181 Msa0127240:CDS 35.0%
! GAGAGCTTCTAAAAAAGTTG+AGG + chr1_3:56494356-56494375 None:intergenic 35.0%
CTCATGACTATGTTATGCAA+TGG - chr1_3:56494561-56494580 Msa0127240:intron 35.0%
GGAGAAAAAAACAGTAAAGC+TGG + chr1_3:56494618-56494637 None:intergenic 35.0%
TATTTCAAGAGTAGCGAAAC+AGG - chr1_3:56494782-56494801 Msa0127240:CDS 35.0%
CAGGTAGTTTAAACAATGTG+TGG - chr1_3:56494801-56494820 Msa0127240:CDS 35.0%
CTTCTAAACCTTGAGATGAT+GGG + chr1_3:56494934-56494953 None:intergenic 35.0%
ACTTCTAAACCTTGAGATGA+TGG + chr1_3:56494935-56494954 None:intergenic 35.0%
TATAATGGTAGTCAAGAGGA+TGG + chr1_3:56495103-56495122 None:intergenic 35.0%
TAAGACAAGCACGAGTATAA+TGG + chr1_3:56495118-56495137 None:intergenic 35.0%
! GATTAACTGACTCCTCTATA+AGG + chr1_3:56495195-56495214 None:intergenic 35.0%
TACTCTTGACAATAAGTTCC+TGG - chr1_3:56495289-56495308 Msa0127240:intron 35.0%
TGTTGCTGCATTTGATTGAA+TGG - chr1_3:56495313-56495332 Msa0127240:intron 35.0%
GTTGCTGCATTTGATTGAAT+GGG - chr1_3:56495314-56495333 Msa0127240:intron 35.0%
TTGCTGCATTTGATTGAATG+GGG - chr1_3:56495315-56495334 Msa0127240:intron 35.0%
! TTGAATGGGGTATCAATTGT+CGG - chr1_3:56495328-56495347 Msa0127240:intron 35.0%
CTCAGAATGTTAGAATCAAC+TGG + chr1_3:56495732-56495751 None:intergenic 35.0%
! TGAGTTGAGTCTAGTATAAG+AGG - chr1_3:56496036-56496055 Msa0127240:five_prime_UTR 35.0%
ATTGTTAGTATTGCAGCAAG+TGG - chr1_3:56496186-56496205 Msa0127240:five_prime_UTR 35.0%
GCATTAAGAATGACAAAGAC+CGG + chr1_3:56496260-56496279 None:intergenic 35.0%
GTTAATGCCAGAGACAATAG+TGG - chr1_3:56489796-56489815 Msa0127240:three_prime_UTR 40.0%
CTGAGATTGGTGAATTTGTC+TGG + chr1_3:56489974-56489993 None:intergenic 40.0%
! GATGTGAAAACCGACTTAGT+TGG + chr1_3:56490108-56490127 None:intergenic 40.0%
TTACAATATGAAACCCCCTG+GGG - chr1_3:56490620-56490639 Msa0127240:intron 40.0%
CAAGTCTGTCTTACAACATC+TGG + chr1_3:56490650-56490669 None:intergenic 40.0%
CAGATGTTGTAAGACAGACT+TGG - chr1_3:56490648-56490667 Msa0127240:intron 40.0%
CAAAAATTGTTAACACCCGG+AGG + chr1_3:56490696-56490715 None:intergenic 40.0%
TGGCAATTGAATGTATGGAC+TGG + chr1_3:56490720-56490739 None:intergenic 40.0%
CCTAAGGACTAACTAATCTG+AGG + chr1_3:56490769-56490788 None:intergenic 40.0%
! CCTCAGATTAGTTAGTCCTT+AGG - chr1_3:56490766-56490785 Msa0127240:intron 40.0%
! AGATTAGTTAGTCCTTAGGC+CGG - chr1_3:56490770-56490789 Msa0127240:intron 40.0%
TATGAATGTTAGGGCCTGTT+TGG - chr1_3:56490826-56490845 Msa0127240:intron 40.0%
! GGATTTTGTTGGATGAGAAC+TGG - chr1_3:56491161-56491180 Msa0127240:CDS 40.0%
GTTTGTGCTGGATGATATTC+AGG - chr1_3:56491183-56491202 Msa0127240:CDS 40.0%
ACCAAAAGGACTATTTCCTC+CGG - chr1_3:56491319-56491338 Msa0127240:intron 40.0%
AAAGTTGCTATCATTGGAGC+TGG - chr1_3:56491371-56491390 Msa0127240:CDS 40.0%
AAGTTGCTATCATTGGAGCT+GGG - chr1_3:56491372-56491391 Msa0127240:CDS 40.0%
GCTAAATGTGCCAAGATATC+TGG - chr1_3:56491594-56491613 Msa0127240:intron 40.0%
TCAATGTTCTCTCATTCAGG+TGG - chr1_3:56491639-56491658 Msa0127240:intron 40.0%
ACGCGGAAATCACATTGAAA+TGG - chr1_3:56491717-56491736 Msa0127240:intron 40.0%
CGCGGAAATCACATTGAAAT+GGG - chr1_3:56491718-56491737 Msa0127240:intron 40.0%
ACTGAAGAAGGACATGCATT+TGG + chr1_3:56491815-56491834 None:intergenic 40.0%
! AATTTTTCTTCGCCTTGCTG+GGG - chr1_3:56491924-56491943 Msa0127240:intron 40.0%
CACACCTTTGTAAACAAAGG+GGG - chr1_3:56491990-56492009 Msa0127240:intron 40.0%
! TTGACCCCCTTTGTTTACAA+AGG + chr1_3:56491997-56492016 None:intergenic 40.0%
GTAAACAAAGGGGGTCAAAT+TGG - chr1_3:56491999-56492018 Msa0127240:intron 40.0%
! AGAACTAGATTTTCGCTTCC+CGG - chr1_3:56492170-56492189 Msa0127240:CDS 40.0%
!! TGTGCATGTTTTTGTCTCCT+TGG - chr1_3:56492330-56492349 Msa0127240:intron 40.0%
!! GTGCATGTTTTTGTCTCCTT+GGG - chr1_3:56492331-56492350 Msa0127240:intron 40.0%
!! TGCATGTTTTTGTCTCCTTG+GGG - chr1_3:56492332-56492351 Msa0127240:intron 40.0%
ATTGAGGGACATACGGAATT+TGG - chr1_3:56492477-56492496 Msa0127240:CDS 40.0%
CGGAATTTGGATAGTGTAAG+AGG - chr1_3:56492490-56492509 Msa0127240:CDS 40.0%
GTCGTCCAAATACAAAGCTA+AGG + chr1_3:56492564-56492583 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG + chr1_3:56492646-56492665 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG + chr1_3:56492647-56492666 None:intergenic 40.0%
! AAACGGAACTTTTGATGCCT+TGG - chr1_3:56492666-56492685 Msa0127240:intron 40.0%
CCATTTGCTCCTTTGTATGT+GGG + chr1_3:56492646-56492665 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG + chr1_3:56492647-56492666 None:intergenic 40.0%
!! TCAGACTGGTTTATGTCCAA+AGG - chr1_3:56492935-56492954 Msa0127240:intron 40.0%
AAATATGGTGAGCATGCAAC+GGG + chr1_3:56493041-56493060 None:intergenic 40.0%
CAAATATGGTGAGCATGCAA+CGG + chr1_3:56493042-56493061 None:intergenic 40.0%
TTTATTTGAGTGGCCCTATC+CGG - chr1_3:56493122-56493141 Msa0127240:CDS 40.0%
CTCTATCTGTGATGTACTTC+CGG + chr1_3:56493144-56493163 None:intergenic 40.0%
! GGAAGTACATCACAGATAGA+GGG - chr1_3:56493143-56493162 Msa0127240:CDS 40.0%
GAAGTACATCACAGATAGAG+GGG - chr1_3:56493144-56493163 Msa0127240:CDS 40.0%
AAGTACATCACAGATAGAGG+GGG - chr1_3:56493145-56493164 Msa0127240:CDS 40.0%
! AAACAGGTTCCATCTAAGGT+GGG - chr1_3:56493249-56493268 Msa0127240:intron 40.0%
TACAGGACTTTCCTTGTCAA+AGG - chr1_3:56493321-56493340 Msa0127240:intron 40.0%
! GGCTTCCACAATTTTCTTCT+CGG + chr1_3:56493441-56493460 None:intergenic 40.0%
CTAACCAGCAACATAAGCAT+CGG + chr1_3:56493462-56493481 None:intergenic 40.0%
!! GGGAGTAACCTTTTAATTCC+AGG + chr1_3:56493581-56493600 None:intergenic 40.0%
ACAGTGCAACTCAGATACAA+TGG - chr1_3:56493665-56493684 Msa0127240:CDS 40.0%
TGCAACTCAGATACAATGGT+TGG - chr1_3:56493669-56493688 Msa0127240:CDS 40.0%
GCAACTCAGATACAATGGTT+GGG - chr1_3:56493670-56493689 Msa0127240:CDS 40.0%
CTTTACGAACCCTTACATTC+TGG - chr1_3:56493828-56493847 Msa0127240:intron 40.0%
ATAGAGAAGGTTGTCTAACC+CGG + chr1_3:56493878-56493897 None:intergenic 40.0%
AGCAAGAAAAATCTGCATCG+GGG + chr1_3:56493903-56493922 None:intergenic 40.0%
TCCTGAAGACTATTACATCG+AGG - chr1_3:56493945-56493964 Msa0127240:CDS 40.0%
CCTGAAGACTATTACATCGA+GGG - chr1_3:56493946-56493965 Msa0127240:CDS 40.0%
AAACTCACAGAAGACTCTCT+TGG + chr1_3:56494028-56494047 None:intergenic 40.0%
AATGGATGAAACTGCACCAT+CGG - chr1_3:56494180-56494199 Msa0127240:intron 40.0%
TTGCATCGTCAGTTCAACAT+AGG - chr1_3:56494584-56494603 Msa0127240:intron 40.0%
TATGTTGGACTTGCAATGAG+AGG + chr1_3:56494649-56494668 None:intergenic 40.0%
CTCAAGGTTTAGAAGTGACT+TGG - chr1_3:56494939-56494958 Msa0127240:intron 40.0%
GGTCTAAATGGATCTTTACC+AGG + chr1_3:56495007-56495026 None:intergenic 40.0%
! GTCTTTTGGTCAGGTCTAAA+TGG + chr1_3:56495019-56495038 None:intergenic 40.0%
!! TTCTGGCTCTTACACAAAAC+AGG - chr1_3:56495060-56495079 Msa0127240:intron 40.0%
CGAGTATAATGGTAGTCAAG+AGG + chr1_3:56495107-56495126 None:intergenic 40.0%
!!! GCAGCTGCTGATATTTTTTG+TGG - chr1_3:56495154-56495173 Msa0127240:intron 40.0%
AATCAAATGCAGCAACAACC+AGG + chr1_3:56495310-56495329 None:intergenic 40.0%
CGAGGAAATGCATGAATATG+AGG + chr1_3:56495376-56495395 None:intergenic 40.0%
! ACCTTTCCTTTTGAATACCG+TGG - chr1_3:56495684-56495703 Msa0127240:intron 40.0%
! CCTTTCCTTTTGAATACCGT+GGG - chr1_3:56495685-56495704 Msa0127240:intron 40.0%
TCTAAAGATTGCTGTGACAC+TGG + chr1_3:56495796-56495815 None:intergenic 40.0%
TCAGGATTACATAGACAGCA+TGG - chr1_3:56495886-56495905 Msa0127240:CDS 40.0%
GATTACATAGACAGCATGGA+AGG - chr1_3:56495890-56495909 Msa0127240:CDS 40.0%
TTCAGCCTATATCTGTGATG+CGG - chr1_3:56495937-56495956 Msa0127240:CDS 40.0%
GTAGATGCCACTATTGTCTC+TGG + chr1_3:56489806-56489825 None:intergenic 45.0%
! TTGTGACTTGTGTGTGTGAG+TGG + chr1_3:56489919-56489938 None:intergenic 45.0%
GTATCTTGGCTACGTAGGTT+GGG + chr1_3:56490005-56490024 None:intergenic 45.0%
TGTGTCTTTGCGAAACGTGT+GGG + chr1_3:56490211-56490230 None:intergenic 45.0%
ATGTGTCTTTGCGAAACGTG+TGG + chr1_3:56490212-56490231 None:intergenic 45.0%
AGACACATAGCCACAAGGTT+CGG - chr1_3:56490224-56490243 Msa0127240:CDS 45.0%
GTTTCCGACATGAGTACCAA+CGG - chr1_3:56490271-56490290 Msa0127240:intron 45.0%
CTAACCGTTGGTACTCATGT+CGG + chr1_3:56490278-56490297 None:intergenic 45.0%
CTGCATAAGCACTTGTGAGA+TGG + chr1_3:56490539-56490558 None:intergenic 45.0%
AAGCTCAAGCCAATCCAACT+AGG - chr1_3:56490564-56490583 Msa0127240:intron 45.0%
CATTATGGGCCTAGTTGGAT+TGG + chr1_3:56490576-56490595 None:intergenic 45.0%
TAGCACATTATGGGCCTAGT+TGG + chr1_3:56490581-56490600 None:intergenic 45.0%
TGTAAGACAGACTTGGGACT+TGG - chr1_3:56490655-56490674 Msa0127240:intron 45.0%
GTAAGACAGACTTGGGACTT+GGG - chr1_3:56490656-56490675 Msa0127240:intron 45.0%
TCGTATATCAAGGGGCTGTT+TGG + chr1_3:56491021-56491040 None:intergenic 45.0%
AGGTTCTACATGGGTCATGT+GGG - chr1_3:56491203-56491222 Msa0127240:CDS 45.0%
ACTTTCATGCCAGCACCAAA+AGG - chr1_3:56491305-56491324 Msa0127240:intron 45.0%
!! GGAAATAGTCCTTTTGGTGC+TGG + chr1_3:56491317-56491336 None:intergenic 45.0%
! TCCGGAGGAAATAGTCCTTT+TGG + chr1_3:56491323-56491342 None:intergenic 45.0%
TTCGGTCCTCGATAATGTTC+AGG + chr1_3:56491347-56491366 None:intergenic 45.0%
GTCAACTGCAGTTGAACTCT+TGG - chr1_3:56491406-56491425 Msa0127240:intron 45.0%
GCAGTTGAACTCTTGGATCA+AGG - chr1_3:56491413-56491432 Msa0127240:intron 45.0%
ACTCTTGGATCAAGGACATG+AGG - chr1_3:56491421-56491440 Msa0127240:intron 45.0%
AACAAAGGGGGTCAAATTGG+AGG - chr1_3:56492002-56492021 Msa0127240:intron 45.0%
! TAGATTTTCGCTTCCCGGTT+GGG - chr1_3:56492175-56492194 Msa0127240:CDS 45.0%
ATCACGCAATCAGAGCAGTA+TGG + chr1_3:56492273-56492292 None:intergenic 45.0%
TACTGCTCTGATTGCGTGAT+TGG - chr1_3:56492273-56492292 Msa0127240:intron 45.0%
! TCAACAAGAGCTCTGACAAC+TGG + chr1_3:56492445-56492464 None:intergenic 45.0%
AGAGCTCTTGTTGATCCAGA+TGG - chr1_3:56492451-56492470 Msa0127240:CDS 45.0%
TTGATCCAGATGGTGCATTG+AGG - chr1_3:56492461-56492480 Msa0127240:CDS 45.0%
TGATCCAGATGGTGCATTGA+GGG - chr1_3:56492462-56492481 Msa0127240:CDS 45.0%
ATGGTGCATTGAGGGACATA+CGG - chr1_3:56492470-56492489 Msa0127240:CDS 45.0%
TGTGCATGCACATGTGCAAT+GGG + chr1_3:56492598-56492617 None:intergenic 45.0%
ATGTGCATGCACATGTGCAA+TGG + chr1_3:56492599-56492618 None:intergenic 45.0%
ACACATGCACCCACATACAA+AGG - chr1_3:56492634-56492653 Msa0127240:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG - chr1_3:56492643-56492662 Msa0127240:intron 45.0%
ACACATGCACCCACATACAA+AGG - chr1_3:56492634-56492653 Msa0127240:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG - chr1_3:56492643-56492662 Msa0127240:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG - chr1_3:56492797-56492816 Msa0127240:intron 45.0%
AGGCGGAATACTGACAAACA+TGG + chr1_3:56492860-56492879 None:intergenic 45.0%
!!! TGCAGGTTAGCTTTTCAGAC+TGG - chr1_3:56492921-56492940 Msa0127240:intron 45.0%
!! GACTGGTTTATGTCCAAAGG+TGG - chr1_3:56492938-56492957 Msa0127240:intron 45.0%
! GTCAATAAACCCAAGGGCAT+AGG + chr1_3:56493002-56493021 None:intergenic 45.0%
ATTGTTTGCCACTAAGACCG+AGG - chr1_3:56493063-56493082 Msa0127240:CDS 45.0%
ACCTTTCAGCATCCGCAAAA+GGG + chr1_3:56493092-56493111 None:intergenic 45.0%
AACCTTTCAGCATCCGCAAA+AGG + chr1_3:56493093-56493112 None:intergenic 45.0%
GGGCCACTCAAATAAACATC+TGG + chr1_3:56493118-56493137 None:intergenic 45.0%
CTGTGATGTACTTCCGGATA+GGG + chr1_3:56493138-56493157 None:intergenic 45.0%
TCTGTGATGTACTTCCGGAT+AGG + chr1_3:56493139-56493158 None:intergenic 45.0%
! CGGAAGTACATCACAGATAG+AGG - chr1_3:56493142-56493161 Msa0127240:CDS 45.0%
GCTGAAACAGGTTCCATCTA+AGG - chr1_3:56493245-56493264 Msa0127240:intron 45.0%
GAAACAGGTTCCATCTAAGG+TGG - chr1_3:56493248-56493267 Msa0127240:intron 45.0%
! AACAGGTTCCATCTAAGGTG+GGG - chr1_3:56493250-56493269 Msa0127240:intron 45.0%
!! GATGGGAGCACTTATGTTAC+AGG - chr1_3:56493304-56493323 Msa0127240:intron 45.0%
! ATTTTCTTCTCGGTAGCCTG+AGG + chr1_3:56493431-56493450 None:intergenic 45.0%
GGCTACCGAGAAGAAAATTG+TGG - chr1_3:56493433-56493452 Msa0127240:intron 45.0%
TTTAATTCCAGGGACATCGC+AGG + chr1_3:56493570-56493589 None:intergenic 45.0%
GCGATGTCCCTGGAATTAAA+AGG - chr1_3:56493570-56493589 Msa0127240:intron 45.0%
AAAGGTTACTCCCATCAGAG+TGG - chr1_3:56493588-56493607 Msa0127240:intron 45.0%
ACGAACCCTTACATTCTGGA+TGG - chr1_3:56493832-56493851 Msa0127240:intron 45.0%
AGGCAACTGAAGAAAGCTAC+CGG - chr1_3:56493856-56493875 Msa0127240:intron 45.0%
GCAAGAAAAATCTGCATCGG+GGG + chr1_3:56493902-56493921 None:intergenic 45.0%
CCCTCGATGTAATAGTCTTC+AGG + chr1_3:56493949-56493968 None:intergenic 45.0%
GACTATTACATCGAGGGACA+AGG - chr1_3:56493952-56493971 Msa0127240:CDS 45.0%
CAAGTTGCTTGATGAACCGA+TGG + chr1_3:56494199-56494218 None:intergenic 45.0%
CTCTTATCAGTGCTCGATCA+TGG + chr1_3:56494392-56494411 None:intergenic 45.0%
! TCATTTGGCAAGGGCATGTA+TGG + chr1_3:56494756-56494775 None:intergenic 45.0%
TCGTTGTTCCCATCATCTCA+AGG - chr1_3:56494923-56494942 Msa0127240:intron 45.0%
! TTCACTGGTGTCTTTTGGTC+AGG + chr1_3:56495028-56495047 None:intergenic 45.0%
ATGGTAGTCAAGAGGATGGA+GGG + chr1_3:56495099-56495118 None:intergenic 45.0%
AATGGTAGTCAAGAGGATGG+AGG + chr1_3:56495100-56495119 None:intergenic 45.0%
TATCAGCAGCTGCAAACTTG+AGG + chr1_3:56495147-56495166 None:intergenic 45.0%
! AATGGGGTATCAATTGTCGG+TGG - chr1_3:56495331-56495350 Msa0127240:intron 45.0%
GCTCTATCCTCAGTTGAAAG+TGG + chr1_3:56495638-56495657 None:intergenic 45.0%
CCCACGGTATTCAAAAGGAA+AGG + chr1_3:56495688-56495707 None:intergenic 45.0%
! ATGGAAGGTGCAACCTTATC+CGG - chr1_3:56495905-56495924 Msa0127240:CDS 45.0%
TCAGCCTATATCTGTGATGC+GGG - chr1_3:56495938-56495957 Msa0127240:CDS 45.0%
GAGCTTCTTGCACAGTCTAA+AGG - chr1_3:56495986-56496005 Msa0127240:CDS 45.0%
GGAAGTGATCACTGTACAAG+CGG - chr1_3:56496329-56496348 Msa0127240:five_prime_UTR 45.0%
CTTGTGTGTGTGAGTGGTAG+TGG + chr1_3:56489913-56489932 None:intergenic 50.0%
TTGGGAGGAGATGCTGAGAT+TGG + chr1_3:56489987-56490006 None:intergenic 50.0%
GGTATCTTGGCTACGTAGGT+TGG + chr1_3:56490006-56490025 None:intergenic 50.0%
!! CAAGGGTATCTTGGCTACGT+AGG + chr1_3:56490010-56490029 None:intergenic 50.0%
GTAGCAGAGAGTGAAGTTGC+CGG + chr1_3:56490157-56490176 None:intergenic 50.0%
ACTCGTGCTGGAGATTCTGT+TGG - chr1_3:56490175-56490194 Msa0127240:CDS 50.0%
CGCAAAGACACATAGCCACA+AGG - chr1_3:56490219-56490238 Msa0127240:CDS 50.0%
AATATGAAACCCCCTGGGGT+TGG - chr1_3:56490624-56490643 Msa0127240:intron 50.0%
GGTCTCAGGTTCAAATCCTC+CGG - chr1_3:56490677-56490696 Msa0127240:intron 50.0%
GTCTCAGGTTCAAATCCTCC+GGG - chr1_3:56490678-56490697 Msa0127240:intron 50.0%
GGGGGTGGCAATTGAATGTA+TGG + chr1_3:56490725-56490744 None:intergenic 50.0%
ACTAATCTCACCGTCCACTG+GGG + chr1_3:56490745-56490764 None:intergenic 50.0%
GACTAATCTCACCGTCCACT+GGG + chr1_3:56490746-56490765 None:intergenic 50.0%
GAAACTTGGTATCCGGCCTA+AGG + chr1_3:56490785-56490804 None:intergenic 50.0%
!! GGATGAGAACTGGTTTGTGC+TGG - chr1_3:56491171-56491190 Msa0127240:CDS 50.0%
CAGGTTCTACATGGGTCATG+TGG - chr1_3:56491202-56491221 Msa0127240:CDS 50.0%
CCTCGATAATGTTCAGGCTC+CGG + chr1_3:56491341-56491360 None:intergenic 50.0%
! CTAGATTTTCGCTTCCCGGT+TGG - chr1_3:56492174-56492193 Msa0127240:CDS 50.0%
! AGATTTTCGCTTCCCGGTTG+GGG - chr1_3:56492176-56492195 Msa0127240:CDS 50.0%
GCAATGCAATGACATCCCCA+AGG + chr1_3:56492350-56492369 None:intergenic 50.0%
TGGACTCAGTGCAAGAGCTA+CGG + chr1_3:56492425-56492444 None:intergenic 50.0%
ATGTCCCTCAATGCACCATC+TGG + chr1_3:56492469-56492488 None:intergenic 50.0%
ATCCAGTTGCCTATGCCCTT+GGG - chr1_3:56492990-56493009 Msa0127240:CDS 50.0%
! TCCCTTTTGCGGATGCTGAA+AGG - chr1_3:56493088-56493107 Msa0127240:CDS 50.0%
TAGAGGGGGCAGGTATAGTT+CGG - chr1_3:56493159-56493178 Msa0127240:CDS 50.0%
GAAGCCGATGCTTATGTTGC+TGG - chr1_3:56493455-56493474 Msa0127240:intron 50.0%
!! GGTTAGTAGTTTGCTTGCCC+TGG - chr1_3:56493476-56493495 Msa0127240:intron 50.0%
GTTACTCCCATCAGAGTGGA+GGG - chr1_3:56493592-56493611 Msa0127240:intron 50.0%
! CCTTTTCCCTCCACTCTGAT+GGG + chr1_3:56493601-56493620 None:intergenic 50.0%
! TCCTTTTCCCTCCACTCTGA+TGG + chr1_3:56493602-56493621 None:intergenic 50.0%
ACCCTTACATTCTGGATGGC+AGG - chr1_3:56493836-56493855 Msa0127240:intron 50.0%
GCCTGCCATCCAGAATGTAA+GGG + chr1_3:56493840-56493859 None:intergenic 50.0%
TGCCTGCCATCCAGAATGTA+AGG + chr1_3:56493841-56493860 None:intergenic 50.0%
GGCAACTGAAGAAAGCTACC+GGG - chr1_3:56493857-56493876 Msa0127240:intron 50.0%
ATCAGATGTGTTCTGACGCC+AGG - chr1_3:56494726-56494745 Msa0127240:CDS 50.0%
! AAGGGCATGTATGGATCTCC+TGG + chr1_3:56494747-56494766 None:intergenic 50.0%
GATCTTTACCAGGTCCCTCA+CGG + chr1_3:56494997-56495016 None:intergenic 50.0%
CTCTGCCCACGGTATTCAAA+AGG + chr1_3:56495693-56495712 None:intergenic 50.0%
AAAGTTGGAAGCTCTGCCCA+CGG + chr1_3:56495704-56495723 None:intergenic 50.0%
TGAAGTTTGCCTGCCGGATA+AGG + chr1_3:56495921-56495940 None:intergenic 50.0%
ATAGGCTGAAGTTTGCCTGC+CGG + chr1_3:56495927-56495946 None:intergenic 50.0%
CAGCCTATATCTGTGATGCG+GGG - chr1_3:56495939-56495958 Msa0127240:CDS 50.0%
AGCCTATATCTGTGATGCGG+GGG - chr1_3:56495940-56495959 Msa0127240:CDS 50.0%
TTCCCCCGCATCACAGATAT+AGG + chr1_3:56495945-56495964 None:intergenic 50.0%
! GGGAAGAATTGGTGGCATTG+CGG - chr1_3:56495960-56495979 Msa0127240:CDS 50.0%
! AGAATTGGTGGCATTGCGGA+AGG - chr1_3:56495964-56495983 Msa0127240:CDS 50.0%
ATGTCACACGCCCAAAGAAC+AGG + chr1_3:56496130-56496149 None:intergenic 50.0%
GTACAGTGATCACTTCCTCC+AGG + chr1_3:56496326-56496345 None:intergenic 50.0%
! TCTTGGCTACGTAGGTTGGG+AGG + chr1_3:56490002-56490021 None:intergenic 55.0%
TCACTCTCTGCTACTCGTGC+TGG - chr1_3:56490163-56490182 Msa0127240:CDS 55.0%
AGCAACGAAGCCGAACCTTG+TGG + chr1_3:56490237-56490256 None:intergenic 55.0%
GGTTCGGCTTCGTTGCTCTT+TGG - chr1_3:56490240-56490259 Msa0127240:intron 55.0%
ACAACATCTGGCCAACCCCA+GGG + chr1_3:56490638-56490657 None:intergenic 55.0%
TACAACATCTGGCCAACCCC+AGG + chr1_3:56490639-56490658 None:intergenic 55.0%
AGACTTGGGACTTGGGTCTC+AGG - chr1_3:56490663-56490682 Msa0127240:intron 55.0%
ATTCAATTGCCACCCCCCAG+TGG - chr1_3:56490728-56490747 Msa0127240:intron 55.0%
TAATCTCACCGTCCACTGGG+GGG + chr1_3:56490743-56490762 None:intergenic 55.0%
CTAATCTCACCGTCCACTGG+GGG + chr1_3:56490744-56490763 None:intergenic 55.0%
GGACTAATCTCACCGTCCAC+TGG + chr1_3:56490747-56490766 None:intergenic 55.0%
CGATAATGTTCAGGCTCCGG+AGG + chr1_3:56491338-56491357 None:intergenic 55.0%
CCGGAGCCTGAACATTATCG+AGG - chr1_3:56491338-56491357 Msa0127240:intron 55.0%
ATCATTGGAGCTGGGCTTGC+TGG - chr1_3:56491380-56491399 Msa0127240:CDS 55.0%
GATCCAGTTGCCTATGCCCT+TGG - chr1_3:56492989-56493008 Msa0127240:CDS 55.0%
! AACCCAAGGGCATAGGCAAC+TGG + chr1_3:56492995-56493014 None:intergenic 55.0%
AAGGGAAGCCTCGGTCTTAG+TGG + chr1_3:56493074-56493093 None:intergenic 55.0%
! AGACCGAGGCTTCCCTTTTG+CGG - chr1_3:56493077-56493096 Msa0127240:CDS 55.0%
CATCCGCAAAAGGGAAGCCT+CGG + chr1_3:56493083-56493102 None:intergenic 55.0%
ACATCACAGATAGAGGGGGC+AGG - chr1_3:56493149-56493168 Msa0127240:CDS 55.0%
CTCTGCATCCCCACCTTAGA+TGG + chr1_3:56493261-56493280 None:intergenic 55.0%
ATATCAGCCTGCGATGTCCC+TGG - chr1_3:56493560-56493579 Msa0127240:intron 55.0%
GGTTACTCCCATCAGAGTGG+AGG - chr1_3:56493591-56493610 Msa0127240:intron 55.0%
CCCATCAGAGTGGAGGGAAA+AGG - chr1_3:56493598-56493617 Msa0127240:intron 55.0%
CGAACTCGTTGGAGTTCCTG+TGG - chr1_3:56493640-56493659 Msa0127240:intron 55.0%
CTGAGTTGCACTGTGACCAC+AGG + chr1_3:56493659-56493678 None:intergenic 55.0%
! CTGCATCGGGGGTATAGAGA+AGG + chr1_3:56493891-56493910 None:intergenic 55.0%
GGCCAATCTCTGTACCGTGA+GGG - chr1_3:56494980-56494999 Msa0127240:intron 55.0%
GTCCCTCACGGTACAGAGAT+TGG + chr1_3:56494985-56495004 None:intergenic 55.0%
GCAGCTGCAAACTTGAGGTC+TGG + chr1_3:56495142-56495161 None:intergenic 55.0%
AAGGTGCAACCTTATCCGGC+AGG - chr1_3:56495909-56495928 Msa0127240:CDS 55.0%
CTGTGATGCGGGGGAAGAAT+TGG - chr1_3:56495949-56495968 Msa0127240:CDS 55.0%
TGATGCGGGGGAAGAATTGG+TGG - chr1_3:56495952-56495971 Msa0127240:CDS 55.0%
AACATCTGGCCAACCCCAGG+GGG + chr1_3:56490636-56490655 None:intergenic 60.0%
CAACATCTGGCCAACCCCAG+GGG + chr1_3:56490637-56490656 None:intergenic 60.0%
AATTGCCACCCCCCAGTGGA+CGG - chr1_3:56490732-56490751 Msa0127240:intron 60.0%
TTCTTCGCCTTGCTGGGGCT+AGG - chr1_3:56491929-56491948 Msa0127240:intron 60.0%
! CGTGTAATGGAGCCCCAACC+GGG + chr1_3:56492191-56492210 None:intergenic 60.0%
! CCGTGTAATGGAGCCCCAAC+CGG + chr1_3:56492192-56492211 None:intergenic 60.0%
CCGGTTGGGGCTCCATTACA+CGG - chr1_3:56492189-56492208 Msa0127240:CDS 60.0%
CGGTTGGGGCTCCATTACAC+GGG - chr1_3:56492190-56492209 Msa0127240:CDS 60.0%
ACTCGTGCGTGTGCCACCTT+TGG + chr1_3:56492954-56492973 None:intergenic 60.0%
CGGCCAATCTCTGTACCGTG+AGG - chr1_3:56494979-56494998 Msa0127240:intron 60.0%
TCTCTGTACCGTGAGGGACC+TGG - chr1_3:56494986-56495005 Msa0127240:intron 60.0%
TTCGCCTTGCTGGGGCTAGG+TGG - chr1_3:56491932-56491951 Msa0127240:intron 65.0%
TCGCCTTGCTGGGGCTAGGT+GGG - chr1_3:56491933-56491952 Msa0127240:intron 65.0%
TTGCTGGGGCTAGGTGGGTG+CGG - chr1_3:56491938-56491957 Msa0127240:intron 65.0%
TCTCACCGTCCACTGGGGGG+TGG + chr1_3:56490740-56490759 None:intergenic 70.0%
GCACCCACCTAGCCCCAGCA+AGG + chr1_3:56491939-56491958 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56489766 56496379 56489766 ID=Msa0127240;Name=Msa0127240
chr1_3 mRNA 56489766 56496379 56489766 ID=Msa0127240-mRNA-1;Parent=Msa0127240;Name=Msa0127240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=364|1|1|1|1|1|14|325|579
chr1_3 exon 56489766 56490255 56489766 ID=Msa0127240-mRNA-1:exon:17899;Parent=Msa0127240-mRNA-1
chr1_3 exon 56491064 56491228 56491064 ID=Msa0127240-mRNA-1:exon:17898;Parent=Msa0127240-mRNA-1
chr1_3 exon 56491342 56491414 56491342 ID=Msa0127240-mRNA-1:exon:17897;Parent=Msa0127240-mRNA-1
chr1_3 exon 56492159 56492287 56492159 ID=Msa0127240-mRNA-1:exon:17896;Parent=Msa0127240-mRNA-1
chr1_3 exon 56492422 56492578 56492422 ID=Msa0127240-mRNA-1:exon:17895;Parent=Msa0127240-mRNA-1
chr1_3 exon 56492669 56492711 56492669 ID=Msa0127240-mRNA-1:exon:17894;Parent=Msa0127240-mRNA-1
chr1_3 exon 56492803 56492890 56492803 ID=Msa0127240-mRNA-1:exon:17893;Parent=Msa0127240-mRNA-1
chr1_3 exon 56492975 56493219 56492975 ID=Msa0127240-mRNA-1:exon:17892;Parent=Msa0127240-mRNA-1
chr1_3 exon 56493641 56493745 56493641 ID=Msa0127240-mRNA-1:exon:17891;Parent=Msa0127240-mRNA-1
chr1_3 exon 56493900 56493973 56493900 ID=Msa0127240-mRNA-1:exon:17890;Parent=Msa0127240-mRNA-1
chr1_3 exon 56494122 56494194 56494122 ID=Msa0127240-mRNA-1:exon:17889;Parent=Msa0127240-mRNA-1
chr1_3 exon 56494353 56494487 56494353 ID=Msa0127240-mRNA-1:exon:17888;Parent=Msa0127240-mRNA-1
chr1_3 exon 56494703 56494827 56494703 ID=Msa0127240-mRNA-1:exon:17887;Parent=Msa0127240-mRNA-1
chr1_3 exon 56495853 56496379 56495853 ID=Msa0127240-mRNA-1:exon:17886;Parent=Msa0127240-mRNA-1
chr1_3 five_prime_UTR 56496016 56496379 56496016 ID=Msa0127240-mRNA-1:five_prime_utr;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56495853 56496015 56495853 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56494703 56494827 56494703 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56494353 56494487 56494353 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56494122 56494194 56494122 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56493900 56493973 56493900 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56493641 56493745 56493641 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56492975 56493219 56492975 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56492803 56492890 56492803 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56492669 56492711 56492669 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56492422 56492578 56492422 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56492159 56492287 56492159 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56491342 56491414 56491342 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56491064 56491228 56491064 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 CDS 56490091 56490255 56490091 ID=Msa0127240-mRNA-1:cds;Parent=Msa0127240-mRNA-1
chr1_3 three_prime_UTR 56489766 56490090 56489766 ID=Msa0127240-mRNA-1:three_prime_utr;Parent=Msa0127240-mRNA-1
Gene Sequence

>Msa0127240

ATGATGACTTCTTTAATTCATTGTCCGGCAACTTCACTCTCTGCTACTCGTGCTGGAGATTCTGTTGGTTTCTTTGTTCCCACACGTTTCGCAAAGACACATAGCCACAAGGTTCGGCTTCGTTGCTCTTTGGATTCTAATGTTTCCGACATGAGTACCAACGCACCAAAAGGACTATTTCCTCCGGAGCCTGAACATTATCGAGGACCGAAGCTTAAAGTTGCTATCATTGGAGCTGGGCTTGCTGGCATGTCAACTGCAGTTGAACTCTTGGATCAAGGACATGAGGTGGATATATACGAGTCAAGATCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGATAAACGCGGAAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGACTATTGAAAAAGGTGGGTGCGGATAACAATCTACTTGTGAAGGATCACACTCACACCTTTGTAAACAAAGGGGGTCAAATTGGAGAACTAGATTTTCGCTTCCCGGTTGGGGCTCCATTACACGGGATAAATGCATTTTTAACCACAAATCAGCTTAAGACTTATGATAAGGCTAGAAATGCCGTAGCTCTTGCACTGAGTCCAGTTGTCAGAGCTCTTGTTGATCCAGATGGTGCATTGAGGGACATACGGAATTTGGATAGTGTTAGCTTTTCAGACTGGTTTATGTCCAAAGGTGGCACACGCACGAGTATTCAAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTGATAATATCAGTGCCCGTTGCATGCTCACCATATTTGCATTGTTTGCCACTAAGACCGAGGCTTCCCTTTTGCGGATGCTGAAAGGTTCACCAGATGTTTATTTGAGTGGCCCTATCCGGAAGTACATCACAGATAGAGGGGGCAGGTTCCATCTAAGGTGGGGATGCAGAGAAGTACTTTATGATAAATCTGCTGATGGGAGCACTTATGTTACAGGACTTTCCTTGTCAAAGGCTACCGAGAAGAAAATTGTGGAAGCCGATGCTTATGTTGCTGCCTGCGATGTCCCTGGAATTAAAAGGTTACTCCCATCAGAGTGGAGGGAAAAGGAGTTTTTCAATAACATATACGAACTCGTTGGAGTTCCTGTGGTCACAGTGCAACTCAGATACAATGGTTGGGTAACTGAATTGCAGAATCTAGAAATGTCAAGGCAACTGAAGAAAGCTACCGGGTTAGACAACCTTCTCTATACCCCCGATGCAGATTTTTCTTGCTTTGCAGATCTTGCACTTGCATCTCCTGAAGACTATTACATCGAGGGACAAGGATCATTACTCCAATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTGCCAAATGAAGAAATTATTTCAAGAGTAGCGAAACAGGTTATATCGTTGTTCCCATCATCTCAAGGTTTAGAAGTGACTTGGTCATCTGTTGTTAAAATCGGCCAATCTCTGTACCGTGAGGGACCTGGTAAAGATCCATTTAGACCTGACCAAAAGACACCAGTGAAAAATTTCTTTCTTTCTGGCTCTTACACAAAACAGGATTACATAGACAGCATGGAAGGTGCAACCTTATCCGGCAGGCAAACTTCAGCCTATATCTGTGATGCGGGGGAAGAATTGGTGGCATTGCGGAAGGAGCTTCTTGCACAGTCTAAAGGCGACATTAAATTTACAAATACTAAAGATGAGTTGAGTCTAGTATAA

Protein sequence

>Msa0127240

MMTSLIHCPATSLSATRAGDSVGFFVPTRFAKTHSHKVRLRCSLDSNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADNNLLVKDHTHTFVNKGGQIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGALRDIRNLDSVSFSDWFMSKGGTRTSIQKMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDRGGRFHLRWGCREVLYDKSADGSTYVTGLSLSKATEKKIVEADAYVAACDVPGIKRLLPSEWREKEFFNNIYELVGVPVVTVQLRYNGWVTELQNLEMSRQLKKATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVAKQVISLFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQTSAYICDAGEELVALRKELLAQSKGDIKFTNTKDELSLV*