AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558800 MtrunA17_Chr8g0378721 92.439 529 40 0 1 529 1 529 0.0 1031
Msa0558800 MtrunA17_Chr8g0378671 87.121 528 65 2 1 527 1 526 0.0 967
Msa0558800 MtrunA17_Chr8g0378701 88.220 382 45 0 1 382 15 396 0.0 715
Msa0558800 MtrunA17_Chr8g0378691 90.411 146 14 0 382 527 9 154 9.08e-91 275
Msa0558800 MtrunA17_Chr4g0027961 36.211 475 254 17 78 527 89 539 3.31e-84 271
Msa0558800 MtrunA17_Chr3g0136771 28.306 431 255 12 67 465 84 492 1.44e-45 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558800 AT4G25650.1 64.103 468 159 3 69 527 67 534 0.0 667
Msa0558800 AT4G25650.2 61.100 491 159 4 69 527 67 557 0.0 654
Msa0558800 AT3G44880.1 34.733 524 275 20 43 527 39 534 6.15e-85 273
Msa0558800 AT2G24820.1 27.533 454 268 12 49 465 50 479 3.15e-46 170
Msa0558800 AT1G44446.4 21.892 370 212 15 85 431 119 434 2.90e-11 66.2
Msa0558800 AT1G44446.1 21.892 370 212 15 85 431 221 536 3.96e-11 65.9

Find 159 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGGTGCAAGTTTATT+TGG 0.156557 4_1:-57815254 None:intergenic
CATTAGGAATTCAAATTAAA+TGG 0.162683 4_1:-57817704 None:intergenic
CAACAAAGAATATAGGAATT+TGG 0.172236 4_1:-57817841 None:intergenic
TCTGAACTTGTTTCATCTTC+AGG 0.212251 4_1:-57813219 None:intergenic
TTGTATTGAGGATCAGTATT+TGG 0.266413 4_1:-57814284 None:intergenic
CACCACATTGAGACTCTTAT+AGG 0.274363 4_1:-57817343 None:intergenic
CAACGGTTTCACAGCAAATC+AGG 0.294043 4_1:+57815178 Msa0558800:CDS
CTGCTGTTGCCGGGACTAAC+AGG 0.295981 4_1:-57815423 None:intergenic
GAAGTGTTCCCACGAATTAA+TGG 0.299892 4_1:-57813117 None:intergenic
CCTGTCCATAAGTTGTTCTC+TGG 0.305227 4_1:-57816335 None:intergenic
ATCCACAGCCCAAAGTTTCT+TGG 0.314198 4_1:-57815462 None:intergenic
AATGAGGGCACTGTTGCTTT+TGG 0.315605 4_1:+57817868 Msa0558800:three_prime_UTR
TCAATCCTTCCTTCAGATAA+AGG 0.315750 4_1:-57813408 None:intergenic
GGAAACAGAGATATTGCTTA+TGG 0.316235 4_1:+57814377 Msa0558800:CDS
CTACTACTGGAATCTGTTAA+TGG 0.328223 4_1:-57813174 None:intergenic
AACAAAGAATATAGGAATTT+GGG 0.330074 4_1:-57817840 None:intergenic
CAAATTCCTATATTCTTTGT+TGG 0.340214 4_1:+57817842 Msa0558800:three_prime_UTR
TATAGCAAGATGTTAGCATT+AGG 0.350375 4_1:-57817720 None:intergenic
ACCTCCCAGAGAACAACTTA+TGG 0.350458 4_1:+57816330 Msa0558800:CDS
CCGTCCTTTACTAGCGTAAT+GGG 0.353585 4_1:+57814356 Msa0558800:CDS
GGGATGTATGTTGCTTTGTT+TGG 0.359314 4_1:+57817779 Msa0558800:three_prime_UTR
CCAAATCAGTCTGCTGTTGC+CGG 0.371564 4_1:-57815433 None:intergenic
GGTGCTTCCCAAGAAACTTT+GGG 0.374338 4_1:+57815454 Msa0558800:CDS
GTAGTTACCGGAGGTCCTTC+AGG 0.376463 4_1:-57813513 None:intergenic
CACGTGAAGGTTACTACTAC+TGG 0.379514 4_1:-57813187 None:intergenic
ATGTTAAATGATTTAGCTTA+GGG 0.379749 4_1:-57812934 None:intergenic
TGGGGATTGATGTTGTTATA+TGG 0.385364 4_1:+57813325 Msa0558800:CDS
AATGTTAAATGATTTAGCTT+AGG 0.390329 4_1:-57812935 None:intergenic
AGAATGGTATCGTGTGGTTT+TGG 0.391412 4_1:+57814261 Msa0558800:CDS
ATCATATCAGTTGCTTCAGT+TGG 0.398957 4_1:+57817381 Msa0558800:CDS
AAGGCAGATGCTCTTGTGAT+TGG 0.399532 4_1:+57816229 Msa0558800:CDS
CTCTGGGAGGTGTAGGAGGA+AGG 0.400762 4_1:-57816318 None:intergenic
CCGGCAACAGCAGACTGATT+TGG 0.404958 4_1:+57815433 Msa0558800:CDS
AAGGACGGATCATCAATTTC+TGG 0.405521 4_1:-57814341 None:intergenic
ATTCATCCAACAAAGAATAT+AGG 0.408603 4_1:-57817848 None:intergenic
TGGTGCTTCCCAAGAAACTT+TGG 0.411359 4_1:+57815453 Msa0558800:CDS
ATACCATTCTGCACAGTACT+TGG 0.413715 4_1:-57814248 None:intergenic
TGAAGGAAGGATTGATCAAT+GGG 0.415631 4_1:+57813416 Msa0558800:CDS
ACAAGAGCATCTGCCTTTGT+TGG 0.416937 4_1:-57816223 None:intergenic
AAACATTGCCTTCTGCCAAT+TGG 0.423428 4_1:-57816197 None:intergenic
TCCACAGCCCAAAGTTTCTT+GGG 0.430795 4_1:-57815461 None:intergenic
GTAATAATATCTTTGTATTG+AGG 0.430842 4_1:-57814296 None:intergenic
AGTTCAGAAGAAATTTGCTT+TGG 0.431020 4_1:+57815386 Msa0558800:CDS
CATCAATTTCTGGTATGAAT+GGG 0.432152 4_1:-57814331 None:intergenic
AGCTACAACAAGAAATTCAA+TGG 0.435956 4_1:+57817437 Msa0558800:CDS
TCATCAATTTCTGGTATGAA+TGG 0.439816 4_1:-57814332 None:intergenic
TCCCAAGAAACTTTGGGCTG+TGG 0.443485 4_1:+57815460 Msa0558800:CDS
TGTTCCCTTCTGCAAAGTAA+TGG 0.446881 4_1:-57812985 None:intergenic
AAGAAATTCAATGGTTGTGT+TGG 0.446962 4_1:+57817446 Msa0558800:CDS
AATATGCAATTTCAGGTATG+AGG 0.448521 4_1:+57814934 Msa0558800:intron
CAATATGTGATCTTGACAAA+AGG 0.457440 4_1:+57813280 Msa0558800:CDS
CTGTCCATAAGTTGTTCTCT+GGG 0.462546 4_1:-57816334 None:intergenic
TATTCTTTGTTGGATGAATG+AGG 0.464146 4_1:+57817852 Msa0558800:three_prime_UTR
ATATGTGGTTCAAGTGCTAT+TGG 0.474819 4_1:-57813045 None:intergenic
CTGAAGGAAGGATTGATCAA+TGG 0.475748 4_1:+57813415 Msa0558800:CDS
TATCTAACTCTTCAATTGAC+AGG 0.476177 4_1:-57815154 None:intergenic
TGCTTTCATTCGCGTTGTCA+CGG 0.476403 4_1:+57817472 Msa0558800:CDS
GAAACAGAGATATTGCTTAT+GGG 0.479650 4_1:+57814378 Msa0558800:CDS
TGCACCTTCTGATGAAACTA+AGG 0.483654 4_1:+57815265 Msa0558800:CDS
GAATGGAGAGGAAAATATAG+TGG 0.487849 4_1:+57816292 Msa0558800:CDS
GATTGATGTTGTTATATGGT+GGG 0.490033 4_1:+57813329 Msa0558800:CDS
TTGGTACTTAAGAGGAGCGT+TGG 0.490914 4_1:+57817630 Msa0558800:three_prime_UTR
GATAATGAAACTAGAGGCTC+AGG 0.491540 4_1:-57812912 None:intergenic
CAACACTTCCATTAATTCGT+GGG 0.491754 4_1:+57813109 Msa0558800:CDS
TCATATCAGTTGCTTCAGTT+GGG 0.492517 4_1:+57817382 Msa0558800:CDS
TGATTGCAAGTTCATTCCTC+AGG 0.492594 4_1:+57813485 Msa0558800:CDS
TCCGTCCTTTACTAGCGTAA+TGG 0.492928 4_1:+57814355 Msa0558800:CDS
CAAATCAGTCTGCTGTTGCC+GGG 0.495892 4_1:-57815432 None:intergenic
ATACACACACATAACAAAGT+TGG 0.497222 4_1:-57817567 None:intergenic
ATTTGTATTCCTGTTAGTCC+CGG 0.500956 4_1:+57815414 Msa0558800:CDS
GGATTGATGTTGTTATATGG+TGG 0.502833 4_1:+57813328 Msa0558800:CDS
TGGATGTTGGTCAAGCCAAT+TGG 0.502926 4_1:+57816182 Msa0558800:CDS
GTTACCTTAGTTTCATCAGA+AGG 0.511824 4_1:-57815269 None:intergenic
GATTGTTGCCACAATGAAGC+AGG 0.513141 4_1:+57817404 Msa0558800:CDS
GATAAAGGTGCTAATCTATG+AGG 0.517916 4_1:-57813393 None:intergenic
TTGTTCCATTACTTTGCAGA+AGG 0.519568 4_1:+57812980 Msa0558800:five_prime_UTR
TGTGCATATGTAGTATGTGC+AGG 0.520193 4_1:-57814980 None:intergenic
GGCACCTCCTGAAGGACCTC+CGG 0.521757 4_1:+57813506 Msa0558800:CDS
AATATGTGATCTTGACAAAA+GGG 0.523473 4_1:+57813281 Msa0558800:CDS
TCAACACTTCCATTAATTCG+TGG 0.523749 4_1:+57813108 Msa0558800:CDS
AAATGGTTAAAGAAGTATGC+AGG 0.524010 4_1:+57816259 Msa0558800:CDS
AGTTGTTCTCTGGGAGGTGT+AGG 0.528179 4_1:-57816325 None:intergenic
CCTCATGCTAAGAAAGTGAT+GGG 0.530068 4_1:+57813306 Msa0558800:CDS
TCTGGGAGGTGTAGGAGGAA+GGG 0.530338 4_1:-57816317 None:intergenic
AGATCACATATTGGCATCAA+AGG 0.530584 4_1:-57813270 None:intergenic
TTCTGTTGTGGAACATGTGA+AGG 0.532955 4_1:+57817757 Msa0558800:three_prime_UTR
GTTTCCCATTACGCTAGTAA+AGG 0.533694 4_1:-57814360 None:intergenic
CTGGAATCTGTTAATGGAGA+AGG 0.535723 4_1:-57813168 None:intergenic
AACTCTTACAATTCACCGTA+TGG 0.536185 4_1:-57817311 None:intergenic
TAGCACCTTTATCTGAAGGA+AGG 0.536409 4_1:+57813403 Msa0558800:CDS
ATGCAGGTGATCAAGTTGAA+TGG 0.536676 4_1:+57816275 Msa0558800:CDS
GTTTCACAGCAAATCAGGGT+TGG 0.537857 4_1:+57815183 Msa0558800:CDS
AACGGTTTCACAGCAAATCA+GGG 0.544637 4_1:+57815179 Msa0558800:CDS
AGATTAGCACCTTTATCTGA+AGG 0.544881 4_1:+57813399 Msa0558800:CDS
ATGAACACTCCAAAACCAAA+AGG 0.547696 4_1:+57815013 Msa0558800:CDS
ATTCCTCAGGCACCTCCTGA+AGG 0.548802 4_1:+57813498 Msa0558800:CDS
AGGTTACAGTGTGTGTATCA+TGG 0.551337 4_1:+57813441 Msa0558800:CDS
ATTCTTTGTTGGATGAATGA+GGG 0.551696 4_1:+57817853 Msa0558800:three_prime_UTR
TTCACATGTTCCACAACAGA+AGG 0.552489 4_1:-57817755 None:intergenic
CCAGAGAACAACTTATGGAC+AGG 0.552971 4_1:+57816335 Msa0558800:CDS
TGGAGATTAATTTCAGCGAA+AGG 0.555282 4_1:-57817547 None:intergenic
AGGTGCTAATCTATGAGGAC+AGG 0.558789 4_1:-57813388 None:intergenic
TGCCACAATGAAGCAGGGTG+TGG 0.560699 4_1:+57817410 Msa0558800:CDS
TGTTCTCTGGGAGGTGTAGG+AGG 0.562948 4_1:-57816322 None:intergenic
ATTGAAGAGTTAGATATCAA+CGG 0.563093 4_1:+57815161 Msa0558800:CDS
TTGACAAAATTGTACCGCGA+TGG 0.563874 4_1:+57815484 Msa0558800:CDS
ATCAATTTCTGGTATGAATG+GGG 0.563979 4_1:-57814330 None:intergenic
ACCTCATGCTAAGAAAGTGA+TGG 0.565040 4_1:+57813305 Msa0558800:CDS
TACAGTGTGTGTATCATGGT+TGG 0.568463 4_1:+57813445 Msa0558800:CDS
GAAAGGCGTGGTTGTAGTCA+TGG 0.570529 4_1:-57817530 None:intergenic
GAAGGATTGATCAATGGGGT+AGG 0.572052 4_1:+57813421 Msa0558800:CDS
GTATATGCATAAAAGATGCT+TGG 0.572412 4_1:-57815227 None:intergenic
TACCCAAGTACTGTGCAGAA+TGG 0.574247 4_1:+57814245 Msa0558800:CDS
TTGCAGAAGGGAACAAACAA+TGG 0.574838 4_1:+57812993 Msa0558800:exon
CCCATCACTTTCTTAGCATG+AGG 0.575414 4_1:-57813306 None:intergenic
CAAGTTCAGAGAAATTTGAC+TGG 0.578841 4_1:+57813232 Msa0558800:CDS
GTGAAAGCTGATAGAGAAGG+AGG 0.578869 4_1:+57815119 Msa0558800:intron
CCCATTACGCTAGTAAAGGA+CGG 0.582016 4_1:-57814356 None:intergenic
AGTACCAATAAAACAAGTAA+CGG 0.587278 4_1:-57817615 None:intergenic
CATACTACATATGCACACTA+CGG 0.590698 4_1:+57814986 Msa0558800:CDS
GGCAATGTTTGTGCCAACAA+AGG 0.593457 4_1:+57816210 Msa0558800:CDS
TACCATTCTGCACAGTACTT+GGG 0.594856 4_1:-57814247 None:intergenic
CGTGGTTGTAGTCATGGTAA+CGG 0.596317 4_1:-57817524 None:intergenic
GGTTCTGATTGAAAACCTCA+TGG 0.598068 4_1:+57814955 Msa0558800:CDS
CAGGTTCATCATCCACGTGA+AGG 0.603801 4_1:-57813200 None:intergenic
TATGCATAAAAGATGCTTGG+TGG 0.606284 4_1:-57815224 None:intergenic
TGTTCCATTACTTTGCAGAA+GGG 0.607145 4_1:+57812981 Msa0558800:five_prime_UTR
ATTAATTTCAGCGAAAGGCG+TGG 0.609911 4_1:-57817542 None:intergenic
TCTTCAATTGACAGGTCAAG+TGG 0.615205 4_1:-57815146 None:intergenic
AATACAAAGATATTATTACA+AGG 0.616833 4_1:+57814300 Msa0558800:CDS
AACCACACCCTGCTTCATTG+TGG 0.629575 4_1:-57817412 None:intergenic
GGGATAGAAATGAGAATGCA+TGG 0.630522 4_1:+57813349 Msa0558800:CDS
TGGTCAAGCCAATTGGCAGA+AGG 0.632277 4_1:+57816189 Msa0558800:CDS
TCCATAAGTTGTTCTCTGGG+AGG 0.632920 4_1:-57816331 None:intergenic
TCTGTTGTGGAACATGTGAA+GGG 0.634943 4_1:+57817758 Msa0558800:three_prime_UTR
CTTAGGGATAATGAAACTAG+AGG 0.635581 4_1:-57812918 None:intergenic
GGTCCTTCAGGAGGTGCCTG+AGG 0.637367 4_1:-57813501 None:intergenic
CAGTAGTAGTAACCTTCACG+TGG 0.639581 4_1:+57813188 Msa0558800:CDS
TACGTATCTTCTCCATGTTG+AGG 0.640030 4_1:+57815545 Msa0558800:CDS
GAACAGGTACTGGAGCCATA+CGG 0.641416 4_1:+57817296 Msa0558800:intron
CTATAAGAGTCTCAATGTGG+TGG 0.643278 4_1:+57817344 Msa0558800:CDS
GTGCATATGTAGTATGTGCA+GGG 0.644617 4_1:-57814979 None:intergenic
TTTCATTCGCGTTGTCACGG+TGG 0.645969 4_1:+57817475 Msa0558800:CDS
TAAAAGAAATTACCTCAACA+TGG 0.650469 4_1:-57815557 None:intergenic
TCAATTTCTGGTATGAATGG+GGG 0.651927 4_1:-57814329 None:intergenic
ACAGTGAAAGCTGATAGAGA+AGG 0.655364 4_1:+57815116 Msa0558800:intron
GGTGATCAAGTTGAATGGAG+AGG 0.656464 4_1:+57816280 Msa0558800:CDS
TAGTATGTGCAGGGTCCATG+AGG 0.657402 4_1:-57814970 None:intergenic
TCACATGTTCCACAACAGAA+GGG 0.659757 4_1:-57817754 None:intergenic
GGAGCGTTGGAACATTTGTG+TGG 0.668212 4_1:+57817643 Msa0558800:three_prime_UTR
TGTTAATGGAGAAGGTGACA+AGG 0.682450 4_1:-57813160 None:intergenic
CTGTTGTGGAACATGTGAAG+GGG 0.699583 4_1:+57817759 Msa0558800:three_prime_UTR
GTTACCGGAGGTCCTTCAGG+AGG 0.700851 4_1:-57813510 None:intergenic
AATTTGACTGGTACTCACAG+TGG 0.710936 4_1:+57813244 Msa0558800:CDS
ATTGTTGCCACAATGAAGCA+GGG 0.715859 4_1:+57817405 Msa0558800:CDS
CTCATGCTAAGAAAGTGATG+GGG 0.722487 4_1:+57813307 Msa0558800:CDS
AGCCTATAAGAGTCTCAATG+TGG 0.722672 4_1:+57817341 Msa0558800:CDS
CTGTGCAGAATGGTATCGTG+TGG 0.742797 4_1:+57814255 Msa0558800:CDS
GAAGGAAGGATTGATCAATG+GGG 0.799393 4_1:+57813417 Msa0558800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAATATTGATTTTTTTAA+TGG - chr4_1:57813072-57813091 None:intergenic 10.0%
!! AAAACAAATAAAAATTCAAA+GGG - chr4_1:57814728-57814747 None:intergenic 10.0%
!! TAAAACAAATAAAAATTCAA+AGG - chr4_1:57814729-57814748 None:intergenic 10.0%
!! TAAAAATACCTTTATATAAA+AGG + chr4_1:57814783-57814802 Msa0558800:intron 10.0%
!!! TAAATGAATAATTTTTTAAC+AGG + chr4_1:57814813-57814832 Msa0558800:intron 10.0%
!!! TTTTATAATATACAAATCAT+TGG + chr4_1:57815575-57815594 Msa0558800:intron 10.0%
!!! ATATTAATGATTTTATATCA+AGG + chr4_1:57816991-57817010 Msa0558800:intron 10.0%
!!! TTTTATATTTGACAAATTAT+AGG - chr4_1:57817229-57817248 None:intergenic 10.0%
!! AAAAAATTATTAATTGCATT+TGG + chr4_1:57817268-57817287 Msa0558800:intron 10.0%
!! TCCATATATTCAATTATTAT+CGG - chr4_1:57813933-57813952 None:intergenic 15.0%
!! AATACAAAGATATTATTACA+AGG + chr4_1:57814300-57814319 Msa0558800:CDS 15.0%
!!! CATTTTTCATAATATAAGTA+AGG - chr4_1:57815313-57815332 None:intergenic 15.0%
!! TTGATAGGAAAAAAAAATAA+TGG + chr4_1:57816162-57816181 Msa0558800:intron 15.0%
!!! ACAAATTTTAAAGTAAAAAC+AGG - chr4_1:57816789-57816808 None:intergenic 15.0%
!!! ATGTTAAATGATTTAGCTTA+GGG - chr4_1:57812937-57812956 None:intergenic 20.0%
!!! AATGTTAAATGATTTAGCTT+AGG - chr4_1:57812938-57812957 None:intergenic 20.0%
!! ACCGATAATAATTGAATATA+TGG + chr4_1:57813929-57813948 Msa0558800:intron 20.0%
!! GTAATAATATCTTTGTATTG+AGG - chr4_1:57814299-57814318 None:intergenic 20.0%
!! ATTTAACTCGTAATTTCTTA+GGG - chr4_1:57814663-57814682 None:intergenic 20.0%
!! TATTTAACTCGTAATTTCTT+AGG - chr4_1:57814664-57814683 None:intergenic 20.0%
!! AAATACCTTTATATAAAAGG+TGG + chr4_1:57814786-57814805 Msa0558800:intron 20.0%
!!! TAAAAGATCTGTGATTTTAT+AGG + chr4_1:57814845-57814864 Msa0558800:intron 20.0%
!!! AAAAGATCTGTGATTTTATA+GGG + chr4_1:57814846-57814865 Msa0558800:intron 20.0%
!! GTGTCATATATAAAACAAAT+AGG - chr4_1:57815076-57815095 None:intergenic 20.0%
!!! TGGATAATATTTTTCTTCAA+CGG - chr4_1:57815645-57815664 None:intergenic 20.0%
!! TTTCTTCTGATTACTTTATT+AGG + chr4_1:57815724-57815743 Msa0558800:intron 20.0%
!! GATATAATTACTAAAATGCT+TGG + chr4_1:57815786-57815805 Msa0558800:intron 20.0%
!!! GAAAAAAAAATAATGGATGT+TGG + chr4_1:57816169-57816188 Msa0558800:CDS 20.0%
!! CTTAAAACTTCACATATTAA+AGG - chr4_1:57816432-57816451 None:intergenic 20.0%
!!! AATATGTGAAGTTTTAAGTA+TGG + chr4_1:57816434-57816453 Msa0558800:intron 20.0%
!!! CTATTAATTTGATACATTGA+AGG - chr4_1:57816851-57816870 None:intergenic 20.0%
!! GAAAATAATAACTCTATTGA+AGG + chr4_1:57816956-57816975 Msa0558800:intron 20.0%
!! CATTAGGAATTCAAATTAAA+TGG - chr4_1:57817707-57817726 None:intergenic 20.0%
!! AACAAAGAATATAGGAATTT+GGG - chr4_1:57817843-57817862 None:intergenic 20.0%
!!! GATTTTTTTAATGGGATATG+TGG - chr4_1:57813063-57813082 None:intergenic 25.0%
! AATATGTGATCTTGACAAAA+GGG + chr4_1:57813281-57813300 Msa0558800:CDS 25.0%
! ATAACTTAACAATTGAATGC+AGG + chr4_1:57813625-57813644 Msa0558800:intron 25.0%
! AATGAGATAACAAATAACTC+AGG + chr4_1:57813663-57813682 Msa0558800:intron 25.0%
! ATGAGATAACAAATAACTCA+GGG + chr4_1:57813664-57813683 Msa0558800:intron 25.0%
!!! TTGTTTTGATGCATTTACTT+TGG + chr4_1:57814171-57814190 Msa0558800:intron 25.0%
!! TTTCTTTTGTAGAACTCTAA+TGG + chr4_1:57814431-57814450 Msa0558800:intron 25.0%
!! TTCTTTTGTAGAACTCTAAT+GGG + chr4_1:57814432-57814451 Msa0558800:intron 25.0%
!! GTCATTGATAATTGATTGAT+AGG + chr4_1:57814551-57814570 Msa0558800:intron 25.0%
!!! AAGCAAATACTATGGTTTTT+TGG - chr4_1:57814890-57814909 None:intergenic 25.0%
! AAAAAACCATAGTATTTGCT+TGG + chr4_1:57814889-57814908 Msa0558800:intron 25.0%
! AATATACCAAGCAAATACTA+TGG - chr4_1:57814898-57814917 None:intergenic 25.0%
! TTTGTTGAATATGCAATTTC+AGG + chr4_1:57814927-57814946 Msa0558800:intron 25.0%
!! TATCATATATGCATACCTTT+TGG - chr4_1:57815031-57815050 None:intergenic 25.0%
! ATTGAAGAGTTAGATATCAA+CGG + chr4_1:57815161-57815180 Msa0558800:CDS 25.0%
!! AATGTGCAACAAATTTTATG+TGG + chr4_1:57815329-57815348 Msa0558800:intron 25.0%
!! ATGTGCAACAAATTTTATGT+GGG + chr4_1:57815330-57815349 Msa0558800:intron 25.0%
!! TTTTCATGTTAGACAAAACT+TGG + chr4_1:57815509-57815528 Msa0558800:CDS 25.0%
! TAAAAGAAATTACCTCAACA+TGG - chr4_1:57815560-57815579 None:intergenic 25.0%
! ATATTGTTATGTAACAGTAC+TGG - chr4_1:57815665-57815684 None:intergenic 25.0%
! CTTCTTGAATTATGAAAGAT+TGG + chr4_1:57815911-57815930 Msa0558800:intron 25.0%
!!! TTGTGATTGGTTTTAGAAAA+TGG + chr4_1:57816242-57816261 Msa0558800:CDS 25.0%
! CATATGATTGCATTTAAACA+TGG + chr4_1:57816365-57816384 Msa0558800:intron 25.0%
! GTCAATTCAAATAAGAAAAG+TGG - chr4_1:57816662-57816681 None:intergenic 25.0%
!!! CTTTTGACTTGAATTTTGAA+TGG + chr4_1:57816681-57816700 Msa0558800:intron 25.0%
!!! AATTTGTTGTAATAGTCACT+TGG + chr4_1:57816802-57816821 Msa0558800:intron 25.0%
! TATTTCGATACATTGAACTA+TGG + chr4_1:57817051-57817070 Msa0558800:intron 25.0%
! AAATTCTTCACTTCAAATCA+CGG - chr4_1:57817187-57817206 None:intergenic 25.0%
! AGTACCAATAAAACAAGTAA+CGG - chr4_1:57817618-57817637 None:intergenic 25.0%
!!! TTGTTTTATTGGTACTTAAG+AGG + chr4_1:57817622-57817641 Msa0558800:three_prime_UTR 25.0%
! CAACAAAGAATATAGGAATT+TGG - chr4_1:57817844-57817863 None:intergenic 25.0%
! CAAATTCCTATATTCTTTGT+TGG + chr4_1:57817842-57817861 Msa0558800:three_prime_UTR 25.0%
! ATTCATCCAACAAAGAATAT+AGG - chr4_1:57817851-57817870 None:intergenic 25.0%
AATGGAACAAGAGAAAAAAG+TGG - chr4_1:57812970-57812989 None:intergenic 30.0%
! CTTTTGTCAAGATCACATAT+TGG - chr4_1:57813282-57813301 None:intergenic 30.0%
CAATATGTGATCTTGACAAA+AGG + chr4_1:57813280-57813299 Msa0558800:CDS 30.0%
GATTGATGTTGTTATATGGT+GGG + chr4_1:57813329-57813348 Msa0558800:CDS 30.0%
!! TATCATGGTTGGTGTTTTAA+TGG + chr4_1:57813456-57813475 Msa0558800:CDS 30.0%
AATGCAGGAATAGAATTAGA+TGG + chr4_1:57813640-57813659 Msa0558800:intron 30.0%
!! GATGTTTTATTGCTATTACG+TGG + chr4_1:57813798-57813817 Msa0558800:intron 30.0%
ATTGGATTTGATGTTTGTGT+CGG - chr4_1:57813889-57813908 None:intergenic 30.0%
TACAAATCTAAACGTGTTCT+CGG - chr4_1:57814039-57814058 None:intergenic 30.0%
GCAACTAGAAGAAATTTAGT+TGG - chr4_1:57814069-57814088 None:intergenic 30.0%
TTGTATTGAGGATCAGTATT+TGG - chr4_1:57814287-57814306 None:intergenic 30.0%
!! ATCAATTTCTGGTATGAATG+GGG - chr4_1:57814333-57814352 None:intergenic 30.0%
!! CATCAATTTCTGGTATGAAT+GGG - chr4_1:57814334-57814353 None:intergenic 30.0%
!! TCATCAATTTCTGGTATGAA+TGG - chr4_1:57814335-57814354 None:intergenic 30.0%
GAAACAGAGATATTGCTTAT+GGG + chr4_1:57814378-57814397 Msa0558800:CDS 30.0%
AACTCAAACACATCTGTATA+TGG + chr4_1:57814503-57814522 Msa0558800:intron 30.0%
! AGTCTCCACCTTTTATATAA+AGG - chr4_1:57814794-57814813 None:intergenic 30.0%
! AATATGCAATTTCAGGTATG+AGG + chr4_1:57814934-57814953 Msa0558800:intron 30.0%
!!! ATATGCATACCTTTTGGTTT+TGG - chr4_1:57815025-57815044 None:intergenic 30.0%
TATCTAACTCTTCAATTGAC+AGG - chr4_1:57815157-57815176 None:intergenic 30.0%
GTATATGCATAAAAGATGCT+TGG - chr4_1:57815230-57815249 None:intergenic 30.0%
! AGTTCAGAAGAAATTTGCTT+TGG + chr4_1:57815386-57815405 Msa0558800:CDS 30.0%
!! GCGTAATTGATTTTTCATAC+CGG + chr4_1:57815888-57815907 Msa0558800:intron 30.0%
TCTTTCATAATTCAAGAAGC+CGG - chr4_1:57815910-57815929 None:intergenic 30.0%
!! CATCCATTTTTCTTAGTCTT+GGG + chr4_1:57815978-57815997 Msa0558800:intron 30.0%
TCAACAATTCGACCAAAATA+AGG - chr4_1:57816057-57816076 None:intergenic 30.0%
! AAATGGTTAAAGAAGTATGC+AGG + chr4_1:57816259-57816278 Msa0558800:CDS 30.0%
ATACGATTCACATGTATAGT+AGG - chr4_1:57816470-57816489 None:intergenic 30.0%
ATACATTACCATAGTCACTT+TGG - chr4_1:57817100-57817119 None:intergenic 30.0%
ATTGCATTTGGTATTTGAAC+AGG + chr4_1:57817280-57817299 Msa0558800:intron 30.0%
AGCTACAACAAGAAATTCAA+TGG + chr4_1:57817437-57817456 Msa0558800:CDS 30.0%
AAGAAATTCAATGGTTGTGT+TGG + chr4_1:57817446-57817465 Msa0558800:CDS 30.0%
ATACACACACATAACAAAGT+TGG - chr4_1:57817570-57817589 None:intergenic 30.0%
!!! AAAGCCGTTACTTGTTTTAT+TGG + chr4_1:57817611-57817630 Msa0558800:three_prime_UTR 30.0%
TATAGCAAGATGTTAGCATT+AGG - chr4_1:57817723-57817742 None:intergenic 30.0%
TATTCTTTGTTGGATGAATG+AGG + chr4_1:57817852-57817871 Msa0558800:three_prime_UTR 30.0%
ATTCTTTGTTGGATGAATGA+GGG + chr4_1:57817853-57817872 Msa0558800:three_prime_UTR 30.0%
CTTAGGGATAATGAAACTAG+AGG - chr4_1:57812921-57812940 None:intergenic 35.0%
TTGTTCCATTACTTTGCAGA+AGG + chr4_1:57812980-57812999 Msa0558800:five_prime_UTR 35.0%
TGTTCCATTACTTTGCAGAA+GGG + chr4_1:57812981-57813000 Msa0558800:five_prime_UTR 35.0%
ATATGTGGTTCAAGTGCTAT+TGG - chr4_1:57813048-57813067 None:intergenic 35.0%
TCAACACTTCCATTAATTCG+TGG + chr4_1:57813108-57813127 Msa0558800:CDS 35.0%
CAACACTTCCATTAATTCGT+GGG + chr4_1:57813109-57813128 Msa0558800:CDS 35.0%
CTACTACTGGAATCTGTTAA+TGG - chr4_1:57813177-57813196 None:intergenic 35.0%
! TCTGAACTTGTTTCATCTTC+AGG - chr4_1:57813222-57813241 None:intergenic 35.0%
CAAGTTCAGAGAAATTTGAC+TGG + chr4_1:57813232-57813251 Msa0558800:CDS 35.0%
AGATCACATATTGGCATCAA+AGG - chr4_1:57813273-57813292 None:intergenic 35.0%
TGGGGATTGATGTTGTTATA+TGG + chr4_1:57813325-57813344 Msa0558800:CDS 35.0%
GGATTGATGTTGTTATATGG+TGG + chr4_1:57813328-57813347 Msa0558800:CDS 35.0%
!! GATAAAGGTGCTAATCTATG+AGG - chr4_1:57813396-57813415 None:intergenic 35.0%
AGATTAGCACCTTTATCTGA+AGG + chr4_1:57813399-57813418 Msa0558800:CDS 35.0%
TCAATCCTTCCTTCAGATAA+AGG - chr4_1:57813411-57813430 None:intergenic 35.0%
TGAAGGAAGGATTGATCAAT+GGG + chr4_1:57813416-57813435 Msa0558800:CDS 35.0%
!! CAAATAACTCAGGGTATTGT+AGG + chr4_1:57813673-57813692 Msa0558800:intron 35.0%
TTCTTTCCTTGTGTAGCTAA+TGG + chr4_1:57813846-57813865 Msa0558800:intron 35.0%
CTGAATGTAACTACATGTGT+CGG + chr4_1:57813957-57813976 Msa0558800:intron 35.0%
! CGTTTCCATATTTGAAGTGT+CGG + chr4_1:57814003-57814022 Msa0558800:intron 35.0%
!! TCAATTTCTGGTATGAATGG+GGG - chr4_1:57814332-57814351 None:intergenic 35.0%
GGAAACAGAGATATTGCTTA+TGG + chr4_1:57814377-57814396 Msa0558800:CDS 35.0%
AACATGCAAGTTACGATCAT+GGG - chr4_1:57814637-57814656 None:intergenic 35.0%
TAACATGCAAGTTACGATCA+TGG - chr4_1:57814638-57814657 None:intergenic 35.0%
CATACTACATATGCACACTA+CGG + chr4_1:57814986-57815005 Msa0558800:CDS 35.0%
ATGAACACTCCAAAACCAAA+AGG + chr4_1:57815013-57815032 Msa0558800:CDS 35.0%
TATGCATAAAAGATGCTTGG+TGG - chr4_1:57815227-57815246 None:intergenic 35.0%
! TCAGAAGGTGCAAGTTTATT+TGG - chr4_1:57815257-57815276 None:intergenic 35.0%
GTTACCTTAGTTTCATCAGA+AGG - chr4_1:57815272-57815291 None:intergenic 35.0%
ATTTGTATTCCTGTTAGTCC+CGG + chr4_1:57815414-57815433 Msa0558800:CDS 35.0%
CTAACATGAAAAATCCATCG+CGG - chr4_1:57815501-57815520 None:intergenic 35.0%
GATTGAACCAACAAATCAAC+AGG - chr4_1:57815602-57815621 None:intergenic 35.0%
CCAAGACTAAGAAAAATGGA+TGG - chr4_1:57815980-57815999 None:intergenic 35.0%
!! CCATCCATTTTTCTTAGTCT+TGG + chr4_1:57815977-57815996 Msa0558800:intron 35.0%
TCACCCAAGACTAAGAAAAA+TGG - chr4_1:57815984-57816003 None:intergenic 35.0%
!!! GTGAGCAATAGTACTTTTTC+AGG + chr4_1:57816000-57816019 Msa0558800:intron 35.0%
!! TCGTGTTTCCTACCTTATTT+TGG + chr4_1:57816042-57816061 Msa0558800:intron 35.0%
CAATTCGACCAAAATAAGGT+AGG - chr4_1:57816053-57816072 None:intergenic 35.0%
GAATGGAGAGGAAAATATAG+TGG + chr4_1:57816292-57816311 Msa0558800:CDS 35.0%
! TCGCTAGTGCATATCTATTT+TGG + chr4_1:57816527-57816546 Msa0558800:intron 35.0%
! TGTCGTCAATTTTGTATAGC+TGG + chr4_1:57816636-57816655 Msa0558800:intron 35.0%
CATTCAAACCAAAGTGACTA+TGG + chr4_1:57817089-57817108 Msa0558800:intron 35.0%
TTTGGTATTTGAACAGGTAC+TGG + chr4_1:57817286-57817305 Msa0558800:intron 35.0%
AACTCTTACAATTCACCGTA+TGG - chr4_1:57817314-57817333 None:intergenic 35.0%
ATCATATCAGTTGCTTCAGT+TGG + chr4_1:57817381-57817400 Msa0558800:CDS 35.0%
TCATATCAGTTGCTTCAGTT+GGG + chr4_1:57817382-57817401 Msa0558800:CDS 35.0%
TGGAGATTAATTTCAGCGAA+AGG - chr4_1:57817550-57817569 None:intergenic 35.0%
! AATTGTTTTCCCTTCTGTTG+TGG + chr4_1:57817745-57817764 Msa0558800:three_prime_UTR 35.0%
TTGGAAAAATCATGCAGATG+AGG + chr4_1:57817798-57817817 Msa0558800:three_prime_UTR 35.0%
GATAATGAAACTAGAGGCTC+AGG - chr4_1:57812915-57812934 None:intergenic 40.0%
TGTTCCCTTCTGCAAAGTAA+TGG - chr4_1:57812988-57813007 None:intergenic 40.0%
TTGCAGAAGGGAACAAACAA+TGG + chr4_1:57812993-57813012 Msa0558800:exon 40.0%
! GAAGTGTTCCCACGAATTAA+TGG - chr4_1:57813120-57813139 None:intergenic 40.0%
TGTTAATGGAGAAGGTGACA+AGG - chr4_1:57813163-57813182 None:intergenic 40.0%
CTGGAATCTGTTAATGGAGA+AGG - chr4_1:57813171-57813190 None:intergenic 40.0%
AATTTGACTGGTACTCACAG+TGG + chr4_1:57813244-57813263 Msa0558800:CDS 40.0%
ACCTCATGCTAAGAAAGTGA+TGG + chr4_1:57813305-57813324 Msa0558800:CDS 40.0%
CCTCATGCTAAGAAAGTGAT+GGG + chr4_1:57813306-57813325 Msa0558800:CDS 40.0%
CTCATGCTAAGAAAGTGATG+GGG + chr4_1:57813307-57813326 Msa0558800:CDS 40.0%
GGGATAGAAATGAGAATGCA+TGG + chr4_1:57813349-57813368 Msa0558800:CDS 40.0%
TAGCACCTTTATCTGAAGGA+AGG + chr4_1:57813403-57813422 Msa0558800:CDS 40.0%
CTGAAGGAAGGATTGATCAA+TGG + chr4_1:57813415-57813434 Msa0558800:CDS 40.0%
GAAGGAAGGATTGATCAATG+GGG + chr4_1:57813417-57813436 Msa0558800:CDS 40.0%
AGGTTACAGTGTGTGTATCA+TGG + chr4_1:57813441-57813460 Msa0558800:CDS 40.0%
TACAGTGTGTGTATCATGGT+TGG + chr4_1:57813445-57813464 Msa0558800:CDS 40.0%
!!! GGTTGGTGTTTTAATGGATC+AGG + chr4_1:57813462-57813481 Msa0558800:CDS 40.0%
TGATTGCAAGTTCATTCCTC+AGG + chr4_1:57813485-57813504 Msa0558800:CDS 40.0%
TTCTGTCCATTAGCTACACA+AGG - chr4_1:57813855-57813874 None:intergenic 40.0%
CAGCATGTAAGTGTCAGTAT+TGG - chr4_1:57813907-57813926 None:intergenic 40.0%
!! TAGCACCGACACTTCAAATA+TGG - chr4_1:57814011-57814030 None:intergenic 40.0%
!!! AGCAGCTACACATGCTTTTT+TGG - chr4_1:57814225-57814244 None:intergenic 40.0%
TACCATTCTGCACAGTACTT+GGG - chr4_1:57814250-57814269 None:intergenic 40.0%
ATACCATTCTGCACAGTACT+TGG - chr4_1:57814251-57814270 None:intergenic 40.0%
! AGAATGGTATCGTGTGGTTT+TGG + chr4_1:57814261-57814280 Msa0558800:CDS 40.0%
AAGGACGGATCATCAATTTC+TGG - chr4_1:57814344-57814363 None:intergenic 40.0%
GTTTCCCATTACGCTAGTAA+AGG - chr4_1:57814363-57814382 None:intergenic 40.0%
CTCCACATTTGACAAAAGCA+TGG + chr4_1:57814751-57814770 Msa0558800:intron 40.0%
! CACCATGCTTTTGTCAAATG+TGG - chr4_1:57814756-57814775 None:intergenic 40.0%
! GGTTCTGATTGAAAACCTCA+TGG + chr4_1:57814955-57814974 Msa0558800:CDS 40.0%
GTGCATATGTAGTATGTGCA+GGG - chr4_1:57814982-57815001 None:intergenic 40.0%
TGTGCATATGTAGTATGTGC+AGG - chr4_1:57814983-57815002 None:intergenic 40.0%
ACAGTGAAAGCTGATAGAGA+AGG + chr4_1:57815116-57815135 Msa0558800:intron 40.0%
TCTTCAATTGACAGGTCAAG+TGG - chr4_1:57815149-57815168 None:intergenic 40.0%
AACGGTTTCACAGCAAATCA+GGG + chr4_1:57815179-57815198 Msa0558800:CDS 40.0%
TGCACCTTCTGATGAAACTA+AGG + chr4_1:57815265-57815284 Msa0558800:CDS 40.0%
TTGACAAAATTGTACCGCGA+TGG + chr4_1:57815484-57815503 Msa0558800:CDS 40.0%
TACGTATCTTCTCCATGTTG+AGG + chr4_1:57815545-57815564 Msa0558800:CDS 40.0%
!! CATTGGTCCTGTTGATTTGT+TGG + chr4_1:57815592-57815611 Msa0558800:intron 40.0%
TTATGTGCACAATAGCTGCT+AGG + chr4_1:57815812-57815831 Msa0558800:intron 40.0%
AAACATTGCCTTCTGCCAAT+TGG - chr4_1:57816200-57816219 None:intergenic 40.0%
!! ATGCAGGTGATCAAGTTGAA+TGG + chr4_1:57816275-57816294 Msa0558800:CDS 40.0%
CTGTCCATAAGTTGTTCTCT+GGG - chr4_1:57816337-57816356 None:intergenic 40.0%
GAATCACTACCTAGTGTAGT+CGG + chr4_1:57816606-57816625 Msa0558800:intron 40.0%
AGCCTATAAGAGTCTCAATG+TGG + chr4_1:57817341-57817360 Msa0558800:CDS 40.0%
CACCACATTGAGACTCTTAT+AGG - chr4_1:57817346-57817365 None:intergenic 40.0%
CTATAAGAGTCTCAATGTGG+TGG + chr4_1:57817344-57817363 Msa0558800:CDS 40.0%
ATTGTTGCCACAATGAAGCA+GGG + chr4_1:57817405-57817424 Msa0558800:CDS 40.0%
ATTAATTTCAGCGAAAGGCG+TGG - chr4_1:57817545-57817564 None:intergenic 40.0%
TCACATGTTCCACAACAGAA+GGG - chr4_1:57817757-57817776 None:intergenic 40.0%
TTCACATGTTCCACAACAGA+AGG - chr4_1:57817758-57817777 None:intergenic 40.0%
TTCTGTTGTGGAACATGTGA+AGG + chr4_1:57817757-57817776 Msa0558800:three_prime_UTR 40.0%
TCTGTTGTGGAACATGTGAA+GGG + chr4_1:57817758-57817777 Msa0558800:three_prime_UTR 40.0%
!! GGGATGTATGTTGCTTTGTT+TGG + chr4_1:57817779-57817798 Msa0558800:three_prime_UTR 40.0%
CACGTGAAGGTTACTACTAC+TGG - chr4_1:57813190-57813209 None:intergenic 45.0%
CAGTAGTAGTAACCTTCACG+TGG + chr4_1:57813188-57813207 Msa0558800:CDS 45.0%
CCCATCACTTTCTTAGCATG+AGG - chr4_1:57813309-57813328 None:intergenic 45.0%
AGGTGCTAATCTATGAGGAC+AGG - chr4_1:57813391-57813410 None:intergenic 45.0%
GAAGGATTGATCAATGGGGT+AGG + chr4_1:57813421-57813440 Msa0558800:CDS 45.0%
GTCTTCAAAAGCGACTCGAA+GGG - chr4_1:57813540-57813559 None:intergenic 45.0%
TGTCTTCAAAAGCGACTCGA+AGG - chr4_1:57813541-57813560 None:intergenic 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - chr4_1:57813878-57813897 None:intergenic 45.0%
! TACCCAAGTACTGTGCAGAA+TGG + chr4_1:57814245-57814264 Msa0558800:CDS 45.0%
TCCGTCCTTTACTAGCGTAA+TGG + chr4_1:57814355-57814374 Msa0558800:CDS 45.0%
CCCATTACGCTAGTAAAGGA+CGG - chr4_1:57814359-57814378 None:intergenic 45.0%
CCGTCCTTTACTAGCGTAAT+GGG + chr4_1:57814356-57814375 Msa0558800:CDS 45.0%
GTGAAAGCTGATAGAGAAGG+AGG + chr4_1:57815119-57815138 Msa0558800:intron 45.0%
CAACGGTTTCACAGCAAATC+AGG + chr4_1:57815178-57815197 Msa0558800:CDS 45.0%
GTTTCACAGCAAATCAGGGT+TGG + chr4_1:57815183-57815202 Msa0558800:CDS 45.0%
TGGTGCTTCCCAAGAAACTT+TGG + chr4_1:57815453-57815472 Msa0558800:CDS 45.0%
GGTGCTTCCCAAGAAACTTT+GGG + chr4_1:57815454-57815473 Msa0558800:CDS 45.0%
TCCACAGCCCAAAGTTTCTT+GGG - chr4_1:57815464-57815483 None:intergenic 45.0%
ATCCACAGCCCAAAGTTTCT+TGG - chr4_1:57815465-57815484 None:intergenic 45.0%
TGGATGTTGGTCAAGCCAAT+TGG + chr4_1:57816182-57816201 Msa0558800:CDS 45.0%
GGCAATGTTTGTGCCAACAA+AGG + chr4_1:57816210-57816229 Msa0558800:CDS 45.0%
!! ACAAGAGCATCTGCCTTTGT+TGG - chr4_1:57816226-57816245 None:intergenic 45.0%
AAGGCAGATGCTCTTGTGAT+TGG + chr4_1:57816229-57816248 Msa0558800:CDS 45.0%
!! GGTGATCAAGTTGAATGGAG+AGG + chr4_1:57816280-57816299 Msa0558800:CDS 45.0%
ACCTCCCAGAGAACAACTTA+TGG + chr4_1:57816330-57816349 Msa0558800:CDS 45.0%
TCCATAAGTTGTTCTCTGGG+AGG - chr4_1:57816334-57816353 None:intergenic 45.0%
CCTGTCCATAAGTTGTTCTC+TGG - chr4_1:57816338-57816357 None:intergenic 45.0%
CCAGAGAACAACTTATGGAC+AGG + chr4_1:57816335-57816354 Msa0558800:CDS 45.0%
CAAAAGAAGCCGACTACACT+AGG - chr4_1:57816618-57816637 None:intergenic 45.0%
GATTGTTGCCACAATGAAGC+AGG + chr4_1:57817404-57817423 Msa0558800:CDS 45.0%
TGCTTTCATTCGCGTTGTCA+CGG + chr4_1:57817472-57817491 Msa0558800:CDS 45.0%
CGTGGTTGTAGTCATGGTAA+CGG - chr4_1:57817527-57817546 None:intergenic 45.0%
! TTGGTACTTAAGAGGAGCGT+TGG + chr4_1:57817630-57817649 Msa0558800:three_prime_UTR 45.0%
CTGTTGTGGAACATGTGAAG+GGG + chr4_1:57817759-57817778 Msa0558800:three_prime_UTR 45.0%
!!! AAAATATTGATTTTTTTAAT+GGG - chr4_1:57813071-57813090 None:intergenic 5.0%
!!! AAAGTTTTTTTTTTAATAAA+AGG - chr4_1:57815949-57815968 None:intergenic 5.0%
!! ATTAAAAAAAAAACTTTAAT+AGG + chr4_1:57815952-57815971 Msa0558800:intron 5.0%
!!! TTTTAATTATTTATTTTGAT+AGG + chr4_1:57816147-57816166 Msa0558800:intron 5.0%
CAGGTTCATCATCCACGTGA+AGG - chr4_1:57813203-57813222 None:intergenic 50.0%
GACTCGAAGGGAGTAGTTAC+CGG - chr4_1:57813528-57813547 None:intergenic 50.0%
CTGTGCAGAATGGTATCGTG+TGG + chr4_1:57814255-57814274 Msa0558800:CDS 50.0%
TAGTATGTGCAGGGTCCATG+AGG - chr4_1:57814973-57814992 None:intergenic 50.0%
CAAATCAGTCTGCTGTTGCC+GGG - chr4_1:57815435-57815454 None:intergenic 50.0%
CCAAATCAGTCTGCTGTTGC+CGG - chr4_1:57815436-57815455 None:intergenic 50.0%
TCCCAAGAAACTTTGGGCTG+TGG + chr4_1:57815460-57815479 Msa0558800:CDS 50.0%
GTGCACAATAGCTGCTAGGT+TGG + chr4_1:57815816-57815835 Msa0558800:intron 50.0%
TGGTCAAGCCAATTGGCAGA+AGG + chr4_1:57816189-57816208 Msa0558800:CDS 50.0%
! AGTTGTTCTCTGGGAGGTGT+AGG - chr4_1:57816328-57816347 None:intergenic 50.0%
!! GAACAGGTACTGGAGCCATA+CGG + chr4_1:57817296-57817315 Msa0558800:intron 50.0%
AACCACACCCTGCTTCATTG+TGG - chr4_1:57817415-57817434 None:intergenic 50.0%
TTTCATTCGCGTTGTCACGG+TGG + chr4_1:57817475-57817494 Msa0558800:CDS 50.0%
! GAAAGGCGTGGTTGTAGTCA+TGG - chr4_1:57817533-57817552 None:intergenic 50.0%
!! GGAGCGTTGGAACATTTGTG+TGG + chr4_1:57817643-57817662 Msa0558800:three_prime_UTR 50.0%
ATTCCTCAGGCACCTCCTGA+AGG + chr4_1:57813498-57813517 Msa0558800:CDS 55.0%
GTAGTTACCGGAGGTCCTTC+AGG - chr4_1:57813516-57813535 None:intergenic 55.0%
TCGAAGGGAGTAGTTACCGG+AGG - chr4_1:57813525-57813544 None:intergenic 55.0%
CCGGCAACAGCAGACTGATT+TGG + chr4_1:57815433-57815452 Msa0558800:CDS 55.0%
! TCTGGGAGGTGTAGGAGGAA+GGG - chr4_1:57816320-57816339 None:intergenic 55.0%
! TGTTCTCTGGGAGGTGTAGG+AGG - chr4_1:57816325-57816344 None:intergenic 55.0%
TGCCACAATGAAGCAGGGTG+TGG + chr4_1:57817410-57817429 Msa0558800:CDS 55.0%
GTTACCGGAGGTCCTTCAGG+AGG - chr4_1:57813513-57813532 None:intergenic 60.0%
CTGCTGTTGCCGGGACTAAC+AGG - chr4_1:57815426-57815445 None:intergenic 60.0%
! CTCTGGGAGGTGTAGGAGGA+AGG - chr4_1:57816321-57816340 None:intergenic 60.0%
!! GGTCCTTCAGGAGGTGCCTG+AGG - chr4_1:57813504-57813523 None:intergenic 65.0%
GGCACCTCCTGAAGGACCTC+CGG + chr4_1:57813506-57813525 Msa0558800:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 57812899 57817888 57812899 ID=Msa0558800;Name=Msa0558800
chr4_1 mRNA 57812899 57817888 57812899 ID=Msa0558800-mRNA-1;Parent=Msa0558800;Name=Msa0558800-mRNA-1;_AED=0.34;_eAED=0.34;_QI=113|1|1|1|1|1|7|331|529
chr4_1 exon 57812899 57813527 57812899 ID=Msa0558800-mRNA-1:exon:17555;Parent=Msa0558800-mRNA-1
chr4_1 exon 57814212 57814399 57814212 ID=Msa0558800-mRNA-1:exon:17556;Parent=Msa0558800-mRNA-1
chr4_1 exon 57814949 57815034 57814949 ID=Msa0558800-mRNA-1:exon:17557;Parent=Msa0558800-mRNA-1
chr4_1 exon 57815120 57815286 57815120 ID=Msa0558800-mRNA-1:exon:17558;Parent=Msa0558800-mRNA-1
chr4_1 exon 57815378 57815566 57815378 ID=Msa0558800-mRNA-1:exon:17559;Parent=Msa0558800-mRNA-1
chr4_1 exon 57816169 57816356 57816169 ID=Msa0558800-mRNA-1:exon:17560;Parent=Msa0558800-mRNA-1
chr4_1 exon 57817302 57817888 57817302 ID=Msa0558800-mRNA-1:exon:17561;Parent=Msa0558800-mRNA-1
chr4_1 five_prime_UTR 57812899 57813011 57812899 ID=Msa0558800-mRNA-1:five_prime_utr;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57813012 57813527 57813012 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57814212 57814399 57814212 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57814949 57815034 57814949 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57815120 57815286 57815120 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57815378 57815566 57815378 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57816169 57816356 57816169 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 CDS 57817302 57817557 57817302 ID=Msa0558800-mRNA-1:cds;Parent=Msa0558800-mRNA-1
chr4_1 three_prime_UTR 57817558 57817888 57817558 ID=Msa0558800-mRNA-1:three_prime_utr;Parent=Msa0558800-mRNA-1
Gene Sequence

>Msa0558800

ATGGAAGCTTTTTCTGTTAGTTCACTTCACATACCAATAGCACTTGAACCACATATCCCATTAAAAAAATCAATATTTTCGAACTCACAATTGCATTCAACACTTCCATTAATTCGTGGGAACACTTCAAAATTCAAGCTTTTCACTGCCTTGTCACCTTCTCCATTAACAGATTCCAGTAGTAGTAACCTTCACGTGGATGATGAACCTGAAGATGAAACAAGTTCAGAGAAATTTGACTGGTACTCACAGTGGTATCCTTTGATGCCAATATGTGATCTTGACAAAAGGGCACCTCATGCTAAGAAAGTGATGGGGATTGATGTTGTTATATGGTGGGATAGAAATGAGAATGCATGGCAAGTTTTTGATGATGCCTGTCCTCATAGATTAGCACCTTTATCTGAAGGAAGGATTGATCAATGGGGTAGGTTACAGTGTGTGTATCATGGTTGGTGTTTTAATGGATCAGGTGATTGCAAGTTCATTCCTCAGGCACCTCCTGAAGGACCTCCGATTCATACGTCCAAAAAAGCATGTGTAGCTGCTTACCCAAGTACTGTGCAGAATGGTATCGTGTGGTTTTGGCCAAATACTGATCCTCAATACAAAGATATTATTACAAGGAAAACACCCCCATTCATACCAGAAATTGATGATCCGTCCTTTACTAGCGTAATGGGAAACAGAGATATTGCTTATGGGTATGAGGTTCTGATTGAAAACCTCATGGACCCTGCACATACTACATATGCACACTACGGAATAATGAACACTCCAAAACCAAAAGTGAAAGCTGATAGAGAAGGAGGAAGACCACTTGACCTGTCAATTGAAGAGTTAGATATCAACGGTTTCACAGCAAATCAGGGTTGGAGCAAAAGCAAGTTTATGCCACCAAGCATCTTTTATGCATATACTGATCCAAATAAACTTGCACCTTCTGATGAAACTAAGAATTCATCAGTTCAGAAGAAATTTGCTTTGGTCTTTATTTGTATTCCTGTTAGTCCCGGCAACAGCAGACTGATTTGGTGCTTCCCAAGAAACTTTGGGCTGTGGATTGACAAAATTGTACCGCGATGGATTTTTCATGTTAGACAAAACTTGGTTCTAGATTCAGATACGTATCTTCTCCATGTTGAGGAAAAAAAAATAATGGATGTTGGTCAAGCCAATTGGCAGAAGGCAATGTTTGTGCCAACAAAGGCAGATGCTCTTGTGATTGGTTTTAGAAAATGGTTAAAGAAGTATGCAGGTGATCAAGTTGAATGGAGAGGAAAATATAGTGGAGCCCTTCCTCCTACACCTCCCAGAGAACAACTTATGGACAGGTACTGGAGCCATACGGTGAATTGTAAGAGTTGCAATTTAGCCTATAAGAGTCTCAATGTGGTGGAAGTGATGCTGCAGATCATATCAGTTGCTTCAGTTGGGATTGTTGCCACAATGAAGCAGGGTGTGGTTTCAGCTACAACAAGAAATTCAATGGTTGTGTTGGCAGTGCTTTCATTCGCGTTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTACCATGACTACAACCACGCCTTTCGCTGA

Protein sequence

>Msa0558800

MEAFSVSSLHIPIALEPHIPLKKSIFSNSQLHSTLPLIRGNTSKFKLFTALSPSPLTDSSSSNLHVDDEPEDETSSEKFDWYSQWYPLMPICDLDKRAPHAKKVMGIDVVIWWDRNENAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPIHTSKKACVAAYPSTVQNGIVWFWPNTDPQYKDIITRKTPPFIPEIDDPSFTSVMGNRDIAYGYEVLIENLMDPAHTTYAHYGIMNTPKPKVKADREGGRPLDLSIEELDINGFTANQGWSKSKFMPPSIFYAYTDPNKLAPSDETKNSSVQKKFALVFICIPVSPGNSRLIWCFPRNFGLWIDKIVPRWIFHVRQNLVLDSDTYLLHVEEKKIMDVGQANWQKAMFVPTKADALVIGFRKWLKKYAGDQVEWRGKYSGALPPTPPREQLMDRYWSHTVNCKSCNLAYKSLNVVEVMLQIISVASVGIVATMKQGVVSATTRNSMVVLAVLSFALSRWLAHFIYKNFRYHDYNHAFR*