AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123980 MtrunA17_Chr1g0184851 94.828 232 3 1 1 232 1 223 3.43e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123980 AT5G43680.1 38.655 238 117 5 1 231 1 216 1.37e-45 152
Msa0123980 AT5G43680.2 38.655 238 117 5 1 231 1 216 1.37e-45 152

Find 98 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCACTCATATTTGATTT+TGG 0.082085 1_3:+51370191 None:intergenic
TCAGAAAGAACATGGTAATT+TGG 0.155371 1_3:-51376335 Msa0123980:five_prime_UTR
AATGGAACCTTTAGATTATA+TGG 0.165860 1_3:-51373707 Msa0123980:five_prime_UTR
CATAGTTCAAGAAGCAATTT+TGG 0.174077 1_3:-51370257 Msa0123980:CDS
CAGAAAGAACATGGTAATTT+GGG 0.216346 1_3:-51376334 Msa0123980:five_prime_UTR
ACTTTGCATATTTAATGATT+TGG 0.278446 1_3:+51370997 None:intergenic
GTTACCAGTTCTTGTTCTTC+AGG 0.295064 1_3:-51370014 Msa0123980:three_prime_UTR
AATTGCATGAAAGATTTCTA+TGG 0.297115 1_3:+51376451 None:intergenic
TAGAAAGACAAGATTAATCT+AGG 0.299773 1_3:-51376361 Msa0123980:five_prime_UTR
TTATTCACCCCAGCATATTC+AGG 0.302866 1_3:+51371148 None:intergenic
TGCCGATGAACCATTCTTTA+CGG 0.317344 1_3:+51370937 None:intergenic
TTAGGTTCATAAGGAACTTC+AGG 0.325877 1_3:-51371413 Msa0123980:intron
AGCAACTGCTTATGCAAGTT+TGG 0.332765 1_3:-51370972 Msa0123980:CDS
GAGGCCATTCGTCATGAAAT+TGG 0.333625 1_3:-51371373 Msa0123980:CDS
AAGATAAAGAGAAGAAAAGT+TGG 0.334439 1_3:-51376304 Msa0123980:five_prime_UTR
AGCTAGCCTCCCTGCTGTTC+TGG 0.335117 1_3:+51371941 None:intergenic
TGGAGAAATATTTCTGTTGC+TGG 0.344609 1_3:-51372101 Msa0123980:CDS
GGAGCTACTGCTGCTGTGAT+TGG 0.363534 1_3:-51372079 Msa0123980:intron
GATATCATTGGCAAATCCTT+TGG 0.363620 1_3:+51371963 None:intergenic
TATATGGGAATATATGATTA+AGG 0.370421 1_3:-51373691 Msa0123980:intron
TAAGTTTATATTATAGCCTT+AGG 0.385991 1_3:+51376404 None:intergenic
CCAGTTTCTGCTGAAAATAC+TGG 0.392588 1_3:-51370863 Msa0123980:CDS
CTGTCCTGAAGAACAAGAAC+TGG 0.402531 1_3:+51370010 None:intergenic
ATTATAGCCTTAGGATGGAT+TGG 0.406189 1_3:+51376413 None:intergenic
AGAAGAAAAGTTGGGAATCA+AGG 0.406381 1_3:-51376295 Msa0123980:five_prime_UTR
AGCAGGGAGGCTAGCTGGAC+GGG 0.426637 1_3:-51371934 Msa0123980:CDS
ATGGAACCTTTAGATTATAT+GGG 0.430532 1_3:-51373706 Msa0123980:five_prime_UTR
GAAAGATTTCTATGGTTTGA+AGG 0.434429 1_3:+51376459 None:intergenic
AGGCTAGCTGGACGGGCAGT+TGG 0.440898 1_3:-51371927 Msa0123980:CDS
GATGAACCATTCTTTACGGC+AGG 0.443796 1_3:+51370941 None:intergenic
TTATCATGCCTCCGAGTTGA+TGG 0.457366 1_3:+51371325 None:intergenic
GGCAGTTGGATATGTACAAT+TGG 0.468263 1_3:-51371913 Msa0123980:CDS
AGAACAGCAGGGAGGCTAGC+TGG 0.471150 1_3:-51371939 Msa0123980:CDS
TTATAGCCTTAGGATGGATT+GGG 0.473441 1_3:+51376414 None:intergenic
TCAAGAACACTGAACAATGC+TGG 0.476922 1_3:-51372134 Msa0123980:exon
TGCATATTTAATGATTTGGA+TGG 0.478378 1_3:+51371001 None:intergenic
CCTGCTGTTCTGGATATCAT+TGG 0.485428 1_3:+51371951 None:intergenic
AATCTAAAGGTTCCATTGAC+CGG 0.486347 1_3:+51373713 None:intergenic
AGCATATCATTCATAAATCC+TGG 0.488462 1_3:-51371349 Msa0123980:CDS
TTCTTGAGTGAGATTTCTGT+TGG 0.492774 1_3:+51372150 None:intergenic
GAAGTTGAGGATGTTAAAGT+TGG 0.493213 1_3:-51370905 Msa0123980:CDS
GGAGAAATATTTCTGTTGCT+GGG 0.498165 1_3:-51372100 Msa0123980:CDS
CAAAATCAAATATGAGTGAG+AGG 0.500227 1_3:-51370190 Msa0123980:exon
CCAATGATATCCAGAACAGC+AGG 0.503283 1_3:-51371951 Msa0123980:CDS
TCAGAGACTTAGCCGGTCAA+TGG 0.506574 1_3:-51373725 Msa0123980:five_prime_UTR
AGATAAAGAGAAGAAAAGTT+GGG 0.509028 1_3:-51376303 Msa0123980:five_prime_UTR
TTTATATTATAGCCTTAGGA+TGG 0.515236 1_3:+51376408 None:intergenic
TGCTTATGCAAGTTTGGCAC+AGG 0.516642 1_3:-51370966 Msa0123980:CDS
GACAGAAAACCTGAATATGC+TGG 0.517261 1_3:-51371157 Msa0123980:CDS
GGCAAATAGCACTGAAGTTG+AGG 0.519368 1_3:-51370918 Msa0123980:CDS
CAGGCCCCTGCCGTAAAGAA+TGG 0.521256 1_3:-51370947 Msa0123980:CDS
AGAAAGACAAGATTAATCTA+GGG 0.522172 1_3:-51376360 Msa0123980:five_prime_UTR
CTGGACTCTTACCAAATCGC+GGG 0.532450 1_3:-51370844 Msa0123980:CDS
CAAGAACACTGAACAATGCT+GGG 0.533552 1_3:-51372133 Msa0123980:exon
TGCCTCCGAGTTGATGGGCC+AGG 0.534429 1_3:+51371331 None:intergenic
TATATTCCCATATAATCTAA+AGG 0.535260 1_3:+51373700 None:intergenic
CTCAATATCCTCTCATACCA+AGG 0.536160 1_3:-51371125 Msa0123980:intron
CACTCTACATTGATCAGCAT+CGG 0.536375 1_3:-51372210 Msa0123980:five_prime_UTR
AAATCACCCAATCCATCCTA+AGG 0.539087 1_3:-51376420 Msa0123980:five_prime_UTR
ACAGAAAACCTGAATATGCT+GGG 0.542451 1_3:-51371156 Msa0123980:CDS
TGAACCATTCTTTACGGCAG+GGG 0.552034 1_3:+51370943 None:intergenic
ACCAGCAAAATTATAGAAGT+AGG 0.554330 1_3:+51372184 None:intergenic
CAGCAGGGAGGCTAGCTGGA+CGG 0.554377 1_3:-51371935 Msa0123980:CDS
GAGTGAGATTTCTGTTGGAG+AGG 0.555526 1_3:+51372155 None:intergenic
TATCATGCCTCCGAGTTGAT+GGG 0.558095 1_3:+51371326 None:intergenic
GTATTAGGAGCTGATTTGAA+AGG 0.559557 1_3:-51370286 Msa0123980:intron
GGAAACAATGGCACAGCTAG+AGG 0.560838 1_3:-51371392 Msa0123980:CDS
GCTTCCAATTTCATGACGAA+TGG 0.565267 1_3:+51371369 None:intergenic
AGATTTCTATGGTTTGAAGG+TGG 0.576776 1_3:+51376462 None:intergenic
CTAGGGTTTCAGAAAGAACA+TGG 0.576985 1_3:-51376343 Msa0123980:five_prime_UTR
TGCCGTAAAGAATGGTTCAT+CGG 0.578762 1_3:-51370939 Msa0123980:CDS
TAACAGAATCAAACTGTCCA+CGG 0.582925 1_3:+51371889 None:intergenic
GACCAGGCATCTATCTCAGA+TGG 0.583124 1_3:-51371298 Msa0123980:intron
TGAATGTGCAATAGGTCCAA+AGG 0.583719 1_3:-51371979 Msa0123980:intron
TACCATCTGAGATAGATGCC+TGG 0.593353 1_3:+51371296 None:intergenic
AGAAAGAACATGGTAATTTG+GGG 0.593387 1_3:-51376333 Msa0123980:five_prime_UTR
TCATTCATCATAAGTATCAA+AGG 0.596158 1_3:-51376250 Msa0123980:intron
TAAATCCTGGCCCATCAACT+CGG 0.600125 1_3:-51371336 Msa0123980:CDS
TCAATAAACCTTGGTATGAG+AGG 0.600322 1_3:+51371117 None:intergenic
AAAATCAAATATGAGTGAGA+GGG 0.605811 1_3:-51370189 Msa0123980:exon
CTTCAGGACAGAAAATCTCA+AGG 0.613401 1_3:-51369998 Msa0123980:three_prime_UTR
ATGAACCATTCTTTACGGCA+GGG 0.614087 1_3:+51370942 None:intergenic
AACAGAATCAAACTGTCCAC+GGG 0.614960 1_3:+51371890 None:intergenic
TAAGGAACTTCAGGAAACAA+TGG 0.628004 1_3:-51371404 Msa0123980:CDS
GAAAGAACATGGTAATTTGG+GGG 0.628157 1_3:-51376332 Msa0123980:five_prime_UTR
ACTGGACTCTTACCAAATCG+CGG 0.630502 1_3:-51370845 Msa0123980:CDS
AGAGGTAGCTCATAATGCAA+AGG 0.639899 1_3:-51370230 Msa0123980:CDS
TTGAAGGTGGAAGAAGATGA+TGG 0.642881 1_3:+51376475 None:intergenic
GCAGCGATCTCAAGTTAACC+AGG 0.643061 1_3:-51371865 Msa0123980:intron
GAGGCATGATAATCTTGACC+AGG 0.644493 1_3:-51371314 Msa0123980:CDS
GGTGCATTCAGAGACTTAGC+CGG 0.651354 1_3:-51373732 Msa0123980:five_prime_UTR
TGGACTCTTACCAAATCGCG+GGG 0.678679 1_3:-51370843 Msa0123980:CDS
CAATGATATCCAGAACAGCA+GGG 0.689974 1_3:-51371950 Msa0123980:CDS
CAGAAAACCTGAATATGCTG+GGG 0.698864 1_3:-51371155 Msa0123980:CDS
ATCCTGGCCCATCAACTCGG+AGG 0.708372 1_3:-51371333 Msa0123980:CDS
GGATATGTACAATTGGCCCG+TGG 0.725712 1_3:-51371906 Msa0123980:CDS
TGATATCCAGAACAGCAGGG+AGG 0.762499 1_3:-51371947 Msa0123980:CDS
GGACTCTTACCAAATCGCGG+GGG 0.774422 1_3:-51370842 Msa0123980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATATAAAATAAATA+GGG + chr1_3:51373016-51373035 None:intergenic 0.0%
!! AATTTATATATAAAATAAAT+AGG + chr1_3:51373017-51373036 None:intergenic 0.0%
!!! TTTTTTTTTTTTAAAAAAAA+TGG + chr1_3:51374951-51374970 Msa0123990:CDS 0.0%
!! ATTTAAAAATAAAATAGACA+TGG + chr1_3:51371961-51371980 None:intergenic 10.0%
!! ATTAGAATAAAATAAAGTAT+TGG + chr1_3:51372436-51372455 None:intergenic 10.0%
!! AAATAATTAATTAATGTACT+TGG + chr1_3:51372983-51373002 None:intergenic 10.0%
!!! AAAAAAGATTATGATTTTTT+TGG - chr1_3:51374794-51374813 Msa0123980:intron 10.0%
!!! TTTTTTTTAAAAAAAATGGA+AGG + chr1_3:51374947-51374966 Msa0123990:CDS 10.0%
!!! GTTTGTGTATTTTAAATTAT+GGG - chr1_3:51370645-51370664 Msa0123980:intron 15.0%
!!! TCTAATGATGTATATTTTAA+GGG + chr1_3:51372597-51372616 None:intergenic 15.0%
!!! ATCTAATGATGTATATTTTA+AGG + chr1_3:51372598-51372617 None:intergenic 15.0%
!! AATTATTATCAAGCATATAA+TGG + chr1_3:51372793-51372812 None:intergenic 15.0%
!!! AATTTTAGTATAAAGAGTAA+TGG - chr1_3:51372809-51372828 Msa0123980:intron 15.0%
!! AGTCATTAACAATTAATATT+AGG + chr1_3:51374653-51374672 Msa0123990:CDS 15.0%
!!! TTTAAAATGAATTTTTTCCA+TGG + chr1_3:51374722-51374741 Msa0123990:CDS 15.0%
!!! ACTATATTTTGTTATTCAAA+AGG - chr1_3:51375842-51375861 Msa0123980:intron 15.0%
!!! AAACAATTTTTATAATCTTC+TGG + chr1_3:51375941-51375960 None:intergenic 15.0%
!! ACTAATAAATAATGAAAAGA+AGG + chr1_3:51375990-51376009 None:intergenic 15.0%
!! ATTATTTATTAGTAAATGCA+CGG - chr1_3:51375997-51376016 Msa0123980:intron 15.0%
!!! GAAAAATTAAGGTATTATTT+AGG + chr1_3:51376256-51376275 None:intergenic 15.0%
!!! GTAGTTTTTGTTTGTTTTTA+CGG + chr1_3:51369916-51369935 None:intergenic 20.0%
!! TAAGTTTATATTATAGCCTT+AGG + chr1_3:51370014-51370033 None:intergenic 20.0%
!! TCAATCATTCATACATAATT+AGG + chr1_3:51370412-51370431 None:intergenic 20.0%
!!! GGTTTGTGTATTTTAAATTA+TGG - chr1_3:51370644-51370663 Msa0123980:intron 20.0%
!! AATATATAGATGTGATGAAT+GGG + chr1_3:51371026-51371045 None:intergenic 20.0%
!!! TATGATTTTGAATTTGAACA+GGG + chr1_3:51371056-51371075 None:intergenic 20.0%
!!! ATATGATTTTGAATTTGAAC+AGG + chr1_3:51371057-51371076 None:intergenic 20.0%
!!! CATTCATTACATTGTTTTAT+CGG - chr1_3:51371931-51371950 Msa0123980:CDS 20.0%
!! TACATCCTGTTTATTTAATT+AGG - chr1_3:51372134-51372153 Msa0123980:exon 20.0%
!! TATATTCCCATATAATCTAA+AGG + chr1_3:51372718-51372737 None:intergenic 20.0%
!! TATATGGGAATATATGATTA+AGG - chr1_3:51372724-51372743 Msa0123980:intron 20.0%
!! TATGTAATTAGTCATAGAAT+CGG - chr1_3:51372857-51372876 Msa0123980:intron 20.0%
!!! ATATAATATAATTTTGCCCT+TGG + chr1_3:51373558-51373577 None:intergenic 20.0%
!! TCATTATAATTAACATCTAC+AGG + chr1_3:51373937-51373956 None:intergenic 20.0%
!! TGTTAAATCAGTAAAAAATG+TGG - chr1_3:51374057-51374076 Msa0123980:intron 20.0%
!! GTTAAATCAGTAAAAAATGT+GGG - chr1_3:51374058-51374077 Msa0123980:intron 20.0%
!! TTTCTTCATTTAGAAATTTC+AGG + chr1_3:51374752-51374771 Msa0123990:CDS 20.0%
!!! TTATGATTTTTTTGGCATTT+TGG - chr1_3:51374802-51374821 Msa0123980:intron 20.0%
!!! CAAGTAAGATTTTAAAAGTT+AGG - chr1_3:51374872-51374891 Msa0123980:intron 20.0%
!! GTACATACTATAAAATTATC+AGG + chr1_3:51375334-51375353 Msa0123990:intron 20.0%
!!! ACGTGTATATATTTATTTCT+AGG - chr1_3:51375377-51375396 Msa0123980:intron 20.0%
!! ACTTTGCATATTTAATGATT+TGG + chr1_3:51375421-51375440 Msa0123990:CDS 20.0%
!! CTGTAATCTAAATTATTGAT+GGG - chr1_3:51376060-51376079 Msa0123980:intron 20.0%
! AATTGCATGAAAGATTTCTA+TGG + chr1_3:51369967-51369986 None:intergenic 25.0%
!! TTTATATTATAGCCTTAGGA+TGG + chr1_3:51370010-51370029 None:intergenic 25.0%
! TAGAAAGACAAGATTAATCT+AGG - chr1_3:51370054-51370073 Msa0123980:three_prime_UTR 25.0%
! AGAAAGACAAGATTAATCTA+GGG - chr1_3:51370055-51370074 Msa0123980:three_prime_UTR 25.0%
! AAGATAAAGAGAAGAAAAGT+TGG - chr1_3:51370111-51370130 Msa0123980:three_prime_UTR 25.0%
! AGATAAAGAGAAGAAAAGTT+GGG - chr1_3:51370112-51370131 Msa0123980:three_prime_UTR 25.0%
! TCATTCATCATAAGTATCAA+AGG - chr1_3:51370165-51370184 Msa0123980:three_prime_UTR 25.0%
! ATCTATGAATGTGAAAATCT+TGG - chr1_3:51370255-51370274 Msa0123980:CDS 25.0%
! ACAAGTTGTAATGTTGTTAT+AGG - chr1_3:51370520-51370539 Msa0123980:intron 25.0%
! TTTGAAGGAAAATTGTGTTA+AGG + chr1_3:51370728-51370747 None:intergenic 25.0%
! GAATATATAGATGTGATGAA+TGG + chr1_3:51371027-51371046 None:intergenic 25.0%
!! ATGATTTTGAATTTGAACAG+GGG + chr1_3:51371055-51371074 None:intergenic 25.0%
!! AACTTTCAGTAACAATTTTG+TGG - chr1_3:51371189-51371208 Msa0123980:intron 25.0%
! TCATCTAACTGAAAATCAAT+CGG - chr1_3:51371752-51371771 Msa0123980:intron 25.0%
!! TATGTGTTTTCATATTGGAA+AGG + chr1_3:51371843-51371862 None:intergenic 25.0%
!! ACTTGTATGTGTTTTCATAT+TGG + chr1_3:51371848-51371867 None:intergenic 25.0%
!! TTTTGTGGACAAAAAATAAC+AGG + chr1_3:51372042-51372061 None:intergenic 25.0%
! TGCTTCCTAATTAAATAAAC+AGG + chr1_3:51372142-51372161 None:intergenic 25.0%
! TGTTTATTTAATTAGGAAGC+AGG - chr1_3:51372141-51372160 Msa0123980:five_prime_UTR 25.0%
! GTTTATTTAATTAGGAAGCA+GGG - chr1_3:51372142-51372161 Msa0123980:five_prime_UTR 25.0%
! ACCAAATGAAATTCTTAGTA+AGG - chr1_3:51372244-51372263 Msa0123980:intron 25.0%
! CCAAATGAAATTCTTAGTAA+GGG - chr1_3:51372245-51372264 Msa0123980:intron 25.0%
! AAAATATATGCAATTGTGGT+AGG + chr1_3:51372284-51372303 None:intergenic 25.0%
!! TACCACAATTGCATATATTT+TGG - chr1_3:51372283-51372302 Msa0123980:intron 25.0%
! TAATTTCTGTAAAACCTTTC+TGG + chr1_3:51372473-51372492 None:intergenic 25.0%
! AATCAAGTAAATTCTTAAGC+TGG - chr1_3:51372527-51372546 Msa0123980:intron 25.0%
! AATGGAACCTTTAGATTATA+TGG - chr1_3:51372708-51372727 Msa0123980:intron 25.0%
! ATGGAACCTTTAGATTATAT+GGG - chr1_3:51372709-51372728 Msa0123980:intron 25.0%
!! TCAAAAGGGTCTTATATTTA+GGG + chr1_3:51372919-51372938 None:intergenic 25.0%
!! GACAATTTCTTTTCTCAAAA+GGG + chr1_3:51372933-51372952 None:intergenic 25.0%
!! AGACAATTTCTTTTCTCAAA+AGG + chr1_3:51372934-51372953 None:intergenic 25.0%
! ATGTACTTGGAAATATCAAA+GGG + chr1_3:51372970-51372989 None:intergenic 25.0%
! AATGTACTTGGAAATATCAA+AGG + chr1_3:51372971-51372990 None:intergenic 25.0%
!! TAAAATAAATAGGGGTATGT+TGG + chr1_3:51373007-51373026 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+GGG + chr1_3:51373084-51373103 None:intergenic 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG + chr1_3:51373085-51373104 None:intergenic 25.0%
!! AACTAAACCATGATTTTACT+AGG - chr1_3:51373213-51373232 Msa0123980:intron 25.0%
!! GCTTTTATAGTATACTACAT+TGG - chr1_3:51373417-51373436 Msa0123980:intron 25.0%
!! TTTGTGTTTTATCCCAATTT+TGG - chr1_3:51373635-51373654 Msa0123980:intron 25.0%
!! TTGTGTTTTATCCCAATTTT+GGG - chr1_3:51373636-51373655 Msa0123980:intron 25.0%
! TATACCTGAAAAAGATTCAA+CGG + chr1_3:51373694-51373713 None:intergenic 25.0%
!!! TTACTGATTTAACAGAAACA+TGG + chr1_3:51374051-51374070 None:intergenic 25.0%
! GTATCATCTAATTTGAAAAG+TGG + chr1_3:51374109-51374128 None:intergenic 25.0%
! CTTCAGAATCAAATATTATC+TGG + chr1_3:51374175-51374194 None:intergenic 25.0%
! CAGATAATATTTGATTCTGA+AGG - chr1_3:51374173-51374192 Msa0123980:intron 25.0%
! TCTTACTTCTGTTTATCATA+AGG - chr1_3:51374373-51374392 Msa0123980:intron 25.0%
!! AATGCTTTAAATTGCTTATC+CGG - chr1_3:51374409-51374428 Msa0123980:intron 25.0%
!!! TTATAAGTTGATCGTAGAAA+GGG + chr1_3:51374582-51374601 None:intergenic 25.0%
!!! ATTATAAGTTGATCGTAGAA+AGG + chr1_3:51374583-51374602 None:intergenic 25.0%
! ATGACTTAATGTGTTACATT+TGG - chr1_3:51374667-51374686 Msa0123980:intron 25.0%
! TTGGTTTCTTGCTAAAAAAT+TGG - chr1_3:51374686-51374705 Msa0123980:intron 25.0%
! AAATTGGCAAAATATAACCA+TGG - chr1_3:51374702-51374721 Msa0123980:intron 25.0%
!! ACCAACATATGTTGTATTTT+AGG - chr1_3:51374984-51375003 Msa0123980:intron 25.0%
! ACCTAAAATACAACATATGT+TGG + chr1_3:51374988-51375007 Msa0123990:CDS 25.0%
!!! TGTTGTATTTTAGGTTCATA+AGG - chr1_3:51374993-51375012 Msa0123980:intron 25.0%
! AACATGGTTATACAAAATCT+CGG + chr1_3:51375213-51375232 Msa0123990:CDS 25.0%
! TGCAACAATAAACAATAACA+TGG + chr1_3:51375229-51375248 Msa0123990:intron 25.0%
!! TAAAATTATCAGGTTGTATC+TGG + chr1_3:51375324-51375343 Msa0123990:intron 25.0%
!! TGCATATTTAATGATTTGGA+TGG + chr1_3:51375417-51375436 Msa0123990:CDS 25.0%
!!! AATAATTTTTGCTGTGTAGT+TGG - chr1_3:51375600-51375619 Msa0123980:intron 25.0%
! GATATCAGACAATCATATTA+AGG + chr1_3:51375630-51375649 Msa0123990:CDS 25.0%
!!! ATTTTGTTATTCAAAAGGTC+CGG - chr1_3:51375847-51375866 Msa0123980:intron 25.0%
! TTCGTTCATTGTTTATACTT+TGG - chr1_3:51375892-51375911 Msa0123980:intron 25.0%
! CAATAATTTAGATTACAGCT+AGG + chr1_3:51376058-51376077 None:intergenic 25.0%
! GCTGTAATCTAAATTATTGA+TGG - chr1_3:51376059-51376078 Msa0123980:intron 25.0%
!!! TCTCACTCATATTTGATTTT+GGG + chr1_3:51376226-51376245 None:intergenic 25.0%
! AAAATCAAATATGAGTGAGA+GGG - chr1_3:51376226-51376245 Msa0123980:intron 25.0%
! GCTAACATCTAGAAAAATTA+AGG + chr1_3:51376267-51376286 None:intergenic 25.0%
!!! TAGTGTATATTTTAGCTTGA+AGG - chr1_3:51376314-51376333 Msa0123980:five_prime_UTR 25.0%
!!! ATATTTTAGCTTGAAGGTAT+TGG - chr1_3:51376320-51376339 Msa0123980:five_prime_UTR 25.0%
GAAAGATTTCTATGGTTTGA+AGG + chr1_3:51369959-51369978 None:intergenic 30.0%
TCAGAAAGAACATGGTAATT+TGG - chr1_3:51370080-51370099 Msa0123980:three_prime_UTR 30.0%
CAGAAAGAACATGGTAATTT+GGG - chr1_3:51370081-51370100 Msa0123980:three_prime_UTR 30.0%
AGAAAGAACATGGTAATTTG+GGG - chr1_3:51370082-51370101 Msa0123980:three_prime_UTR 30.0%
AATAATGAGGAATAAGGGAA+GGG + chr1_3:51370197-51370216 None:intergenic 30.0%
AAATAATGAGGAATAAGGGA+AGG + chr1_3:51370198-51370217 None:intergenic 30.0%
! TCCCTTATTCCTCATTATTT+TGG - chr1_3:51370198-51370217 Msa0123980:CDS 30.0%
CCCAAAATAATGAGGAATAA+GGG + chr1_3:51370202-51370221 None:intergenic 30.0%
! CCCTTATTCCTCATTATTTT+GGG - chr1_3:51370199-51370218 Msa0123980:CDS 30.0%
TCCCAAAATAATGAGGAATA+AGG + chr1_3:51370203-51370222 None:intergenic 30.0%
!!! TCCTCATTATTTTGGGATTA+AGG - chr1_3:51370206-51370225 Msa0123980:CDS 30.0%
!!! CCTCATTATTTTGGGATTAA+GGG - chr1_3:51370207-51370226 Msa0123980:CDS 30.0%
! ATGTTGTTTAGATGTCTAAC+AGG - chr1_3:51370449-51370468 Msa0123980:intron 30.0%
TTTAGATGTCTAACAGGTTA+AGG - chr1_3:51370455-51370474 Msa0123980:intron 30.0%
TTAGATGTCTAACAGGTTAA+GGG - chr1_3:51370456-51370475 Msa0123980:intron 30.0%
TTATTACTAGCCGTAACATA+AGG + chr1_3:51370561-51370580 None:intergenic 30.0%
ACAATCAACATCACAAAACA+TGG + chr1_3:51370621-51370640 None:intergenic 30.0%
!! TTTTGTGATGTTGATTGTAC+TGG - chr1_3:51370623-51370642 Msa0123980:intron 30.0%
! ACAGAATCAGAAGATTTTGA+AGG + chr1_3:51370743-51370762 None:intergenic 30.0%
TCGAATATTTCAAAGCGAAA+TGG + chr1_3:51370798-51370817 None:intergenic 30.0%
AATCTTCCTTACGTATTTGT+TGG + chr1_3:51370919-51370938 None:intergenic 30.0%
AAATACGTAAGGAAGATTCT+GGG - chr1_3:51370921-51370940 Msa0123980:CDS 30.0%
TTATTCAATTAAGTACCAGC+AGG - chr1_3:51371133-51371152 Msa0123980:CDS 30.0%
!! GAAAGTTTGTTAATTGCGTT+GGG + chr1_3:51371176-51371195 None:intergenic 30.0%
!! TGAAAGTTTGTTAATTGCGT+TGG + chr1_3:51371177-51371196 None:intergenic 30.0%
TTATCAAGTCAAGGATTGTT+TGG + chr1_3:51371365-51371384 None:intergenic 30.0%
!! GATTGATTTTCAGTTAGATG+AGG + chr1_3:51371753-51371772 None:intergenic 30.0%
! TGAATTTTCATAGTAGCAAC+AGG - chr1_3:51371776-51371795 Msa0123980:intron 30.0%
CAATGTAATGAATGAAGAGT+AGG + chr1_3:51371925-51371944 None:intergenic 30.0%
! TGAAGGTGAAACATATTTTG+TGG + chr1_3:51372057-51372076 None:intergenic 30.0%
!!! TGTTTCACCTTCACTTTTTT+AGG - chr1_3:51372064-51372083 Msa0123980:intron 30.0%
AGGTTATCCTAAAAAAGTGA+AGG + chr1_3:51372074-51372093 None:intergenic 30.0%
GCATGATCAAACTCATAAAA+AGG + chr1_3:51372094-51372113 None:intergenic 30.0%
CCCTTACTAAGAATTTCATT+TGG + chr1_3:51372248-51372267 None:intergenic 30.0%
CTCCAAAATATATGCAATTG+TGG + chr1_3:51372288-51372307 None:intergenic 30.0%
!! AGTGAAGTTCAAAGTGTTTT+GGG - chr1_3:51372333-51372352 Msa0123980:intron 30.0%
CATGATATGTTAGGTTTAGT+GGG - chr1_3:51372377-51372396 Msa0123980:intron 30.0%
ATGAATAAGAAGAACCAGAA+AGG - chr1_3:51372456-51372475 Msa0123980:intron 30.0%
!! AGTGATAAGTTGATGTTTGT+AGG - chr1_3:51372662-51372681 Msa0123980:intron 30.0%
TAAGGTGAAGAGATTAGTAA+AGG - chr1_3:51372742-51372761 Msa0123980:intron 30.0%
! CTCAAAAGGGTCTTATATTT+AGG + chr1_3:51372920-51372939 None:intergenic 30.0%
TGTACTTGGAAATATCAAAG+GGG + chr1_3:51372969-51372988 None:intergenic 30.0%
!!! ATTCCCGTTATTTTTCCAAA+AGG - chr1_3:51373157-51373176 Msa0123980:intron 30.0%
!!! TTCCCGTTATTTTTCCAAAA+GGG - chr1_3:51373158-51373177 Msa0123980:intron 30.0%
AAAGTCTTAGGTATCAGTTA+CGG - chr1_3:51373363-51373382 Msa0123980:intron 30.0%
TACTATAAAAGCTTTGCAAG+TGG + chr1_3:51373409-51373428 None:intergenic 30.0%
TAACCCATATCCAAATGATT+TGG - chr1_3:51373459-51373478 Msa0123980:intron 30.0%
!!! GTTGAATCTTTTTCAGGTAT+AGG - chr1_3:51373693-51373712 Msa0123980:five_prime_UTR 30.0%
AACAGAAACATGGAAAGAAA+AGG + chr1_3:51374041-51374060 None:intergenic 30.0%
! TCCTACTTCTATAATTTTGC+TGG - chr1_3:51374230-51374249 Msa0123980:intron 30.0%
ACCAGCAAAATTATAGAAGT+AGG + chr1_3:51374234-51374253 None:intergenic 30.0%
CGATCAACTTATAATTCACA+TGG - chr1_3:51374588-51374607 Msa0123980:intron 30.0%
! TCACATGGATTTGTTTCATT+AGG - chr1_3:51374603-51374622 Msa0123980:intron 30.0%
TTAGGAACATCATAACATCA+AGG - chr1_3:51374890-51374909 Msa0123980:intron 30.0%
AGCATATCATTCATAAATCC+TGG - chr1_3:51375066-51375085 Msa0123980:intron 30.0%
TTTATAGTATGTACTGCTCT+AGG - chr1_3:51375340-51375359 Msa0123980:intron 30.0%
TTCAATACATGCATATGTAC+AGG - chr1_3:51375752-51375771 Msa0123980:intron 30.0%
! TGTTTATACTTTGGCTCATT+TGG - chr1_3:51375901-51375920 Msa0123980:intron 30.0%
! ATCTGATTTGAAACAAGCTT+TGG - chr1_3:51376104-51376123 Msa0123980:intron 30.0%
! AAACAAGCTTTGGTTGTATT+AGG - chr1_3:51376114-51376133 Msa0123980:intron 30.0%
! CATAGTTCAAGAAGCAATTT+TGG - chr1_3:51376158-51376177 Msa0123980:intron 30.0%
!! CTCACTCATATTTGATTTTG+GGG + chr1_3:51376225-51376244 None:intergenic 30.0%
!! CTCTCACTCATATTTGATTT+TGG + chr1_3:51376227-51376246 None:intergenic 30.0%
CAAAATCAAATATGAGTGAG+AGG - chr1_3:51376225-51376244 Msa0123980:intron 30.0%
!! GAATGCTTGTGTTTTTAACT+AGG - chr1_3:51376439-51376458 Msa0123980:five_prime_UTR 30.0%
! ATCGCTACGTATATCATTTT+TGG + chr1_3:51376484-51376503 None:intergenic 30.0%
AGATTTCTATGGTTTGAAGG+TGG + chr1_3:51369956-51369975 None:intergenic 35.0%
! TTATAGCCTTAGGATGGATT+GGG + chr1_3:51370004-51370023 None:intergenic 35.0%
! ATTATAGCCTTAGGATGGAT+TGG + chr1_3:51370005-51370024 None:intergenic 35.0%
GAAAGAACATGGTAATTTGG+GGG - chr1_3:51370083-51370102 Msa0123980:three_prime_UTR 35.0%
AGAAGAAAAGTTGGGAATCA+AGG - chr1_3:51370120-51370139 Msa0123980:three_prime_UTR 35.0%
CCCTTAATCCCAAAATAATG+AGG + chr1_3:51370210-51370229 None:intergenic 35.0%
TGGGATTAAGGGTTTGAATT+TGG - chr1_3:51370218-51370237 Msa0123980:CDS 35.0%
GGGATTAAGGGTTTGAATTT+GGG - chr1_3:51370219-51370238 Msa0123980:CDS 35.0%
!! AAGGGTTTGAATTTGGGTTT+TGG - chr1_3:51370225-51370244 Msa0123980:CDS 35.0%
!! AGGGTTTGAATTTGGGTTTT+GGG - chr1_3:51370226-51370245 Msa0123980:CDS 35.0%
TAGATGTCTAACAGGTTAAG+GGG - chr1_3:51370457-51370476 Msa0123980:intron 35.0%
! TTTTGTAGTTCTTGCAACGA+CGG + chr1_3:51370498-51370517 None:intergenic 35.0%
! AATGGCTCTCATTTTACACA+CGG + chr1_3:51370780-51370799 None:intergenic 35.0%
!! TGATCGTTTACAGAGTATTG+TGG + chr1_3:51370890-51370909 None:intergenic 35.0%
CATTTGCCAACAAATACGTA+AGG - chr1_3:51370910-51370929 Msa0123980:CDS 35.0%
CAAATACGTAAGGAAGATTC+TGG - chr1_3:51370920-51370939 Msa0123980:CDS 35.0%
AATACGTAAGGAAGATTCTG+GGG - chr1_3:51370922-51370941 Msa0123980:CDS 35.0%
ATGTGATGAATGGGAATGAA+AGG + chr1_3:51371017-51371036 None:intergenic 35.0%
AAATCTTCTTCATATCCTGC+TGG + chr1_3:51371151-51371170 None:intergenic 35.0%
! CTAAAACGCGTTTTTCGTTT+TGG + chr1_3:51371320-51371339 None:intergenic 35.0%
TGTGAAATACTCAAGGTAAG+TGG + chr1_3:51371392-51371411 None:intergenic 35.0%
!!! ATTTTAGCTTCTGTCAAGTG+TGG + chr1_3:51371506-51371525 None:intergenic 35.0%
!!! TGTTTTGAGAATTTCTGCAC+CGG + chr1_3:51371654-51371673 None:intergenic 35.0%
TGCAGAAATTCTCAAAACAC+CGG - chr1_3:51371655-51371674 Msa0123980:intron 35.0%
CCATTGATCTCAGAATGTAA+TGG + chr1_3:51371877-51371896 None:intergenic 35.0%
!! CCATTACATTCTGAGATCAA+TGG - chr1_3:51371874-51371893 Msa0123980:CDS 35.0%
! TGAATGAAGAGTAGGTTGAA+GGG + chr1_3:51371917-51371936 None:intergenic 35.0%
! ATGAATGAAGAGTAGGTTGA+AGG + chr1_3:51371918-51371937 None:intergenic 35.0%
TGAAATTCTTAGTAAGGGTG+TGG - chr1_3:51372250-51372269 Msa0123980:intron 35.0%
!! CAGTGAAGTTCAAAGTGTTT+TGG - chr1_3:51372332-51372351 Msa0123980:intron 35.0%
GATAGTAGGCATGATATGTT+AGG - chr1_3:51372368-51372387 Msa0123980:intron 35.0%
GCATGATATGTTAGGTTTAG+TGG - chr1_3:51372376-51372395 Msa0123980:intron 35.0%
GATAACTATAAACAGCTTGC+CGG + chr1_3:51372414-51372433 None:intergenic 35.0%
AATCTAAAGGTTCCATTGAC+CGG + chr1_3:51372705-51372724 None:intergenic 35.0%
! AAGGGTCTTATATTTAGGGA+CGG + chr1_3:51372915-51372934 None:intergenic 35.0%
TACCTCCATCCCTAATTATA+GGG + chr1_3:51373184-51373203 None:intergenic 35.0%
! ACCATGATTTTACTAGGTTG+TGG - chr1_3:51373219-51373238 Msa0123980:intron 35.0%
ACCACAACCTAGTAAAATCA+TGG + chr1_3:51373223-51373242 None:intergenic 35.0%
AAAAGATACTTTCTCTGCCT+AGG + chr1_3:51373253-51373272 None:intergenic 35.0%
TAGAAGCTAAGACAATTCTC+CGG - chr1_3:51373331-51373350 Msa0123980:intron 35.0%
ATTGGCATAACGAATCATGT+TGG - chr1_3:51373435-51373454 Msa0123980:intron 35.0%
TTGGCATAACGAATCATGTT+GGG - chr1_3:51373436-51373455 Msa0123980:intron 35.0%
GTGCCAAATCATTTGGATAT+GGG + chr1_3:51373465-51373484 None:intergenic 35.0%
TGTGCCAAATCATTTGGATA+TGG + chr1_3:51373466-51373485 None:intergenic 35.0%
!! ATCGATCAGTTGTTTTACCA+AGG - chr1_3:51373538-51373557 Msa0123980:intron 35.0%
!! TCGATCAGTTGTTTTACCAA+GGG - chr1_3:51373539-51373558 Msa0123980:intron 35.0%
CTCAATGAGTTCCCAAAATT+GGG + chr1_3:51373650-51373669 None:intergenic 35.0%
TGAAAAAGATTCAACGGAGT+GGG + chr1_3:51373688-51373707 None:intergenic 35.0%
!!! TTTTCAGGTATAGGCCATTT+TGG - chr1_3:51373702-51373721 Msa0123980:five_prime_UTR 35.0%
!!! TAGGCCATTTTGGAGTTATT+CGG - chr1_3:51373712-51373731 Msa0123980:five_prime_UTR 35.0%
! GAATGTCTTATTGTCCTTTG+AGG - chr1_3:51373989-51374008 Msa0123980:intron 35.0%
! CTAGTACATTTTCTCCTCAA+AGG + chr1_3:51374006-51374025 None:intergenic 35.0%
TTCTTGAGTGAGATTTCTGT+TGG + chr1_3:51374268-51374287 None:intergenic 35.0%
! ACAATGCTGGGATTTTCATT+TGG - chr1_3:51374294-51374313 Msa0123980:intron 35.0%
! TGGAGAAATATTTCTGTTGC+TGG - chr1_3:51374314-51374333 Msa0123980:intron 35.0%
! GGAGAAATATTTCTGTTGCT+GGG - chr1_3:51374315-51374334 Msa0123980:intron 35.0%
! CCTATTGCACATTCATTTTC+CGG + chr1_3:51374431-51374450 None:intergenic 35.0%
GATATCATTGGCAAATCCTT+TGG + chr1_3:51374455-51374474 None:intergenic 35.0%
TAACAGAATCAAACTGTCCA+CGG + chr1_3:51374529-51374548 None:intergenic 35.0%
AAAGTGAATCGCATGTAGTT+GGG + chr1_3:51374831-51374850 Msa0123990:CDS 35.0%
!! GACTTTACCACGTTTTAGTA+TGG + chr1_3:51374925-51374944 Msa0123990:CDS 35.0%
TTAGGTTCATAAGGAACTTC+AGG - chr1_3:51375002-51375021 Msa0123980:intron 35.0%
TAAGGAACTTCAGGAAACAA+TGG - chr1_3:51375011-51375030 Msa0123980:intron 35.0%
CAAAATCTCGGCAATTGTAT+CGG + chr1_3:51375201-51375220 Msa0123990:CDS 35.0%
ACAGAAAACCTGAATATGCT+GGG - chr1_3:51375259-51375278 Msa0123980:intron 35.0%
TCAATAAACCTTGGTATGAG+AGG + chr1_3:51375301-51375320 Msa0123990:intron 35.0%
TGTATCTGGTCAATAAACCT+TGG + chr1_3:51375310-51375329 Msa0123990:intron 35.0%
GAAGTTGAGGATGTTAAAGT+TGG - chr1_3:51375510-51375529 Msa0123980:intron 35.0%
TTGTGATCCTGTGATGTTTA+TGG - chr1_3:51375715-51375734 Msa0123980:intron 35.0%
AAGAAAGCCATAAACATCAC+AGG + chr1_3:51375725-51375744 None:intergenic 35.0%
CAAGCAAAAACCTTAACTTC+CGG + chr1_3:51375869-51375888 None:intergenic 35.0%
!! GTATTAGGAGCTGATTTGAA+AGG - chr1_3:51376129-51376148 Msa0123980:intron 35.0%
! AGTTCAAGAAGCAATTTTGG+AGG - chr1_3:51376161-51376180 Msa0123980:intron 35.0%
TTGAAGGTGGAAGAAGATGA+TGG + chr1_3:51369943-51369962 None:intergenic 40.0%
AAATCACCCAATCCATCCTA+AGG - chr1_3:51369995-51370014 Msa0123980:three_prime_UTR 40.0%
CTAGGGTTTCAGAAAGAACA+TGG - chr1_3:51370072-51370091 Msa0123980:three_prime_UTR 40.0%
TTTGTAGTTCTTGCAACGAC+GGG + chr1_3:51370497-51370516 None:intergenic 40.0%
AAATATTCGACTCTCCTCCA+CGG - chr1_3:51370808-51370827 Msa0123980:intron 40.0%
AAGCAGAGTCTGAAGAAGAA+AGG + chr1_3:51370847-51370866 None:intergenic 40.0%
TATTGTGGCTATTGTATCCG+AGG + chr1_3:51370875-51370894 None:intergenic 40.0%
AGTGGTGGTTTATCAAGTCA+AGG + chr1_3:51371374-51371393 None:intergenic 40.0%
GAAATACTCAAGGTAAGTGG+TGG + chr1_3:51371389-51371408 None:intergenic 40.0%
CGAAGCATGTGAAATACTCA+AGG + chr1_3:51371399-51371418 None:intergenic 40.0%
!!! TGTTGATTTTGAACCGAGCT+CGG + chr1_3:51371585-51371604 None:intergenic 40.0%
TTGTTAAGTCACGGCTAAAG+CGG + chr1_3:51371700-51371719 None:intergenic 40.0%
TTTAGCCGTGACTTAACAAC+CGG - chr1_3:51371701-51371720 Msa0123980:intron 40.0%
TTAAGCCGGTTGTTAAGTCA+CGG + chr1_3:51371709-51371728 None:intergenic 40.0%
TGAAGGGAAAATGAGATGGA+TGG + chr1_3:51371901-51371920 None:intergenic 40.0%
AGGTTGAAGGGAAAATGAGA+TGG + chr1_3:51371905-51371924 None:intergenic 40.0%
!!! ACAGAGAGTGGTCTAGTTTT+TGG - chr1_3:51372203-51372222 Msa0123980:five_prime_UTR 40.0%
!!! CAGAGAGTGGTCTAGTTTTT+GGG - chr1_3:51372204-51372223 Msa0123980:five_prime_UTR 40.0%
! TTTGGGTGAAAGTGTGTAAC+AGG - chr1_3:51372221-51372240 Msa0123980:five_prime_UTR 40.0%
!!! CAAAGTGTTTTGGGAGACAA+AGG - chr1_3:51372342-51372361 Msa0123980:intron 40.0%
GGAGACAAAGGATAGATAGT+AGG - chr1_3:51372354-51372373 Msa0123980:intron 40.0%
GGCATTGCTATATATTGCGA+AGG + chr1_3:51372576-51372595 None:intergenic 40.0%
ACACTAACCCTCTCTCTTAA+AGG - chr1_3:51373074-51373093 Msa0123980:intron 40.0%
!! GGCCCTTTTGGAAAAATAAC+GGG + chr1_3:51373163-51373182 None:intergenic 40.0%
!! GGGCCCTTTTGGAAAAATAA+CGG + chr1_3:51373164-51373183 None:intergenic 40.0%
TCCAAAAGGGCCCTATAATT+AGG - chr1_3:51373171-51373190 Msa0123980:intron 40.0%
CCAAAAGGGCCCTATAATTA+GGG - chr1_3:51373172-51373191 Msa0123980:intron 40.0%
CTACCTCCATCCCTAATTAT+AGG + chr1_3:51373185-51373204 None:intergenic 40.0%
AGAAGCTAAGACAATTCTCC+GGG - chr1_3:51373332-51373351 Msa0123980:intron 40.0%
TTAGGTATCAGTTACGGTGT+AGG - chr1_3:51373369-51373388 Msa0123980:intron 40.0%
TTTGCGTGTGCCAAATCATT+TGG + chr1_3:51373472-51373491 None:intergenic 40.0%
GCTCAATGAGTTCCCAAAAT+TGG + chr1_3:51373651-51373670 None:intergenic 40.0%
CTGAAAAAGATTCAACGGAG+TGG + chr1_3:51373689-51373708 None:intergenic 40.0%
! CACTCCGTTGAATCTTTTTC+AGG - chr1_3:51373687-51373706 Msa0123980:intron 40.0%
TAACTCTAGACACTGTGATC+TGG + chr1_3:51373740-51373759 None:intergenic 40.0%
! AGATCACAGTGTCTAGAGTT+AGG - chr1_3:51373739-51373758 Msa0123980:intron 40.0%
AGGAGGTTAAACTACAACTG+AGG + chr1_3:51373768-51373787 None:intergenic 40.0%
TCAGCCACATGTTACAAAGA+GGG + chr1_3:51373791-51373810 None:intergenic 40.0%
ATCAGCCACATGTTACAAAG+AGG + chr1_3:51373792-51373811 None:intergenic 40.0%
CACTCTACATTGATCAGCAT+CGG - chr1_3:51374205-51374224 Msa0123980:intron 40.0%
TCAAGAACACTGAACAATGC+TGG - chr1_3:51374281-51374300 Msa0123980:intron 40.0%
CAAGAACACTGAACAATGCT+GGG - chr1_3:51374282-51374301 Msa0123980:intron 40.0%
CCGGAAAATGAATGTGCAAT+AGG - chr1_3:51374428-51374447 Msa0123980:intron 40.0%
TGAATGTGCAATAGGTCCAA+AGG - chr1_3:51374436-51374455 Msa0123980:intron 40.0%
CAATGATATCCAGAACAGCA+GGG - chr1_3:51374465-51374484 Msa0123980:intron 40.0%
GGCAGTTGGATATGTACAAT+TGG - chr1_3:51374502-51374521 Msa0123980:intron 40.0%
AACAGAATCAAACTGTCCAC+GGG + chr1_3:51374528-51374547 None:intergenic 40.0%
CAAAGTGAATCGCATGTAGT+TGG + chr1_3:51374832-51374851 Msa0123990:CDS 40.0%
!! TACCACGTTTTAGTATGGAC+AGG + chr1_3:51374920-51374939 Msa0123990:CDS 40.0%
GCTTCCAATTTCATGACGAA+TGG + chr1_3:51375049-51375068 Msa0123990:intron 40.0%
GACAGAAAACCTGAATATGC+TGG - chr1_3:51375258-51375277 Msa0123980:intron 40.0%
CAGAAAACCTGAATATGCTG+GGG - chr1_3:51375260-51375279 Msa0123980:intron 40.0%
TTATTCACCCCAGCATATTC+AGG + chr1_3:51375270-51375289 Msa0123990:intron 40.0%
CTCAATATCCTCTCATACCA+AGG - chr1_3:51375290-51375309 Msa0123980:intron 40.0%
AGCAACTGCTTATGCAAGTT+TGG - chr1_3:51375443-51375462 Msa0123980:intron 40.0%
ATGAACCATTCTTTACGGCA+GGG + chr1_3:51375476-51375495 Msa0123990:CDS 40.0%
TGCCGTAAAGAATGGTTCAT+CGG - chr1_3:51375476-51375495 Msa0123980:intron 40.0%
TGCCGATGAACCATTCTTTA+CGG + chr1_3:51375481-51375500 Msa0123990:CDS 40.0%
! CCAGTATTTTCAGCAGAAAC+TGG + chr1_3:51375555-51375574 Msa0123990:CDS 40.0%
CCAGTTTCTGCTGAAAATAC+TGG - chr1_3:51375552-51375571 Msa0123980:intron 40.0%
TTATTATTACCCCCGCGATT+TGG + chr1_3:51375585-51375604 Msa0123990:CDS 40.0%
TTCAAAAGGTCCGGAAGTTA+AGG - chr1_3:51375856-51375875 Msa0123980:intron 40.0%
AGAGGTAGCTCATAATGCAA+AGG - chr1_3:51376185-51376204 Msa0123980:intron 40.0%
GTTACCAGTTCTTGTTCTTC+AGG - chr1_3:51376401-51376420 Msa0123980:five_prime_UTR 40.0%
CTTCAGGACAGAAAATCTCA+AGG - chr1_3:51376417-51376436 Msa0123980:five_prime_UTR 40.0%
TTGTAGTTCTTGCAACGACG+GGG + chr1_3:51370496-51370515 None:intergenic 45.0%
ACAGCCGTGACCTTATGTTA+CGG - chr1_3:51370548-51370567 Msa0123980:intron 45.0%
CTAGCCGTAACATAAGGTCA+CGG + chr1_3:51370555-51370574 None:intergenic 45.0%
GCATCATTCGTGACTCTTTC+GGG + chr1_3:51370698-51370717 None:intergenic 45.0%
CGCATCATTCGTGACTCTTT+CGG + chr1_3:51370699-51370718 None:intergenic 45.0%
CGAAAGAGTCACGAATGATG+CGG - chr1_3:51370697-51370716 Msa0123980:intron 45.0%
!! TTTTCGTTTTGGACAGGGGT+TGG + chr1_3:51371309-51371328 None:intergenic 45.0%
!! GCGTTTTTCGTTTTGGACAG+GGG + chr1_3:51371313-51371332 None:intergenic 45.0%
!! CGCGTTTTTCGTTTTGGACA+GGG + chr1_3:51371314-51371333 None:intergenic 45.0%
!! ACGCGTTTTTCGTTTTGGAC+AGG + chr1_3:51371315-51371334 None:intergenic 45.0%
! AATGGTGACGAACTACATCG+AGG + chr1_3:51371549-51371568 None:intergenic 45.0%
ACAGCTTCTCTGCATAAACG+CGG - chr1_3:51371602-51371621 Msa0123980:intron 45.0%
GAAGATCACTGGTGGTAGTT+TGG + chr1_3:51371630-51371649 None:intergenic 45.0%
! GACTTAACAACCGGCTTAAC+CGG - chr1_3:51371710-51371729 Msa0123980:intron 45.0%
CAGTTAGATGAGGAGAGAAC+CGG + chr1_3:51371743-51371762 None:intergenic 45.0%
! TGTTAGGTTTAGTGGGCAAC+AGG - chr1_3:51372384-51372403 Msa0123980:intron 45.0%
! GGTCTTATATTTAGGGACGG+AGG + chr1_3:51372912-51372931 None:intergenic 45.0%
! CCCTAATTATAGGGCCCTTT+TGG + chr1_3:51373175-51373194 None:intergenic 45.0%
AAGGGCCCTATAATTAGGGA+TGG - chr1_3:51373176-51373195 Msa0123980:intron 45.0%
AGGTTGTGGTAATCACACCT+AGG - chr1_3:51373233-51373252 Msa0123980:intron 45.0%
GGCTCCGAATAACTCCAAAA+TGG + chr1_3:51373719-51373738 None:intergenic 45.0%
ACATGTTACAAAGAGGGAGG+AGG + chr1_3:51373785-51373804 None:intergenic 45.0%
TCCTCCCTCTTTGTAACATG+TGG - chr1_3:51373784-51373803 Msa0123980:intron 45.0%
GAGTGAGATTTCTGTTGGAG+AGG + chr1_3:51374263-51374282 None:intergenic 45.0%
! CCTGCTGTTCTGGATATCAT+TGG + chr1_3:51374467-51374486 None:intergenic 45.0%
CCAATGATATCCAGAACAGC+AGG - chr1_3:51374464-51374483 Msa0123980:intron 45.0%
TGCCTGTCCATACTAAAACG+TGG - chr1_3:51374915-51374934 Msa0123980:intron 45.0%
GAGGCCATTCGTCATGAAAT+TGG - chr1_3:51375042-51375061 Msa0123980:intron 45.0%
TAAATCCTGGCCCATCAACT+CGG - chr1_3:51375079-51375098 Msa0123980:intron 45.0%
!! TATCATGCCTCCGAGTTGAT+GGG + chr1_3:51375092-51375111 Msa0123990:intron 45.0%
! TTATCATGCCTCCGAGTTGA+TGG + chr1_3:51375093-51375112 Msa0123990:intron 45.0%
GAGGCATGATAATCTTGACC+AGG - chr1_3:51375101-51375120 Msa0123980:intron 45.0%
! TACCATCTGAGATAGATGCC+TGG + chr1_3:51375122-51375141 Msa0123990:intron 45.0%
TGCTTATGCAAGTTTGGCAC+AGG - chr1_3:51375449-51375468 Msa0123980:intron 45.0%
TGAACCATTCTTTACGGCAG+GGG + chr1_3:51375475-51375494 Msa0123990:CDS 45.0%
GATGAACCATTCTTTACGGC+AGG + chr1_3:51375477-51375496 Msa0123990:CDS 45.0%
! GGCAAATAGCACTGAAGTTG+AGG - chr1_3:51375497-51375516 Msa0123980:intron 45.0%
ACTGGACTCTTACCAAATCG+CGG - chr1_3:51375570-51375589 Msa0123980:intron 45.0%
!! AGAAGCAATTTTGGAGGCAG+AGG - chr1_3:51376167-51376186 Msa0123980:intron 45.0%
CTGTCCTGAAGAACAAGAAC+TGG + chr1_3:51376408-51376427 None:intergenic 45.0%
!! TTTATATATAAAATAAATAG+GGG + chr1_3:51373015-51373034 None:intergenic 5.0%
TGTGGCTATTGTATCCGAGG+CGG + chr1_3:51370872-51370891 None:intergenic 50.0%
ACGCACGTCTGATTCTTCGT+CGG - chr1_3:51371436-51371455 Msa0123980:intron 50.0%
CTACCACCAGTGATCTTCTC+CGG - chr1_3:51371632-51371651 Msa0123980:intron 50.0%
CTCATCGAGCGACAATTCTC+CGG + chr1_3:51371677-51371696 None:intergenic 50.0%
GAAGTGAGAGAGACAGAGAG+TGG - chr1_3:51372191-51372210 Msa0123980:five_prime_UTR 50.0%
! TAGGTTTAGTGGGCAACAGG+TGG - chr1_3:51372387-51372406 Msa0123980:intron 50.0%
GGTGCATTCAGAGACTTAGC+CGG - chr1_3:51372683-51372702 Msa0123980:intron 50.0%
TCAGAGACTTAGCCGGTCAA+TGG - chr1_3:51372690-51372709 Msa0123980:intron 50.0%
GGCCCTATAATTAGGGATGG+AGG - chr1_3:51373179-51373198 Msa0123980:intron 50.0%
! TATGCGACTAGCCAGTGTCA+CGG - chr1_3:51373292-51373311 Msa0123980:intron 50.0%
CTAAGACTTTCCTCTGTGCC+CGG + chr1_3:51373353-51373372 None:intergenic 50.0%
GTATCAGTTACGGTGTAGGC+AGG - chr1_3:51373373-51373392 Msa0123980:intron 50.0%
GCCACATGTTACAAAGAGGG+AGG + chr1_3:51373788-51373807 None:intergenic 50.0%
CTACTGCTGCTGTGATTGGT+TGG - chr1_3:51374340-51374359 Msa0123980:intron 50.0%
TGATATCCAGAACAGCAGGG+AGG - chr1_3:51374468-51374487 Msa0123980:intron 50.0%
GGATATGTACAATTGGCCCG+TGG - chr1_3:51374509-51374528 Msa0123980:intron 50.0%
GCAGCGATCTCAAGTTAACC+AGG - chr1_3:51374550-51374569 Msa0123980:intron 50.0%
!! TCGTAGAAAGGGAGAGTACC+TGG + chr1_3:51374571-51374590 None:intergenic 50.0%
GGAAACAATGGCACAGCTAG+AGG - chr1_3:51375023-51375042 Msa0123980:intron 50.0%
GACCAGGCATCTATCTCAGA+TGG - chr1_3:51375117-51375136 Msa0123980:intron 50.0%
CTGGACTCTTACCAAATCGC+GGG - chr1_3:51375571-51375590 Msa0123980:intron 50.0%
TGGACTCTTACCAAATCGCG+GGG - chr1_3:51375572-51375591 Msa0123980:intron 50.0%
TATTCGACTCTCCTCCACGG+TGG - chr1_3:51370811-51370830 Msa0123980:intron 55.0%
AAGGAATGCCAGTTCCACCG+TGG + chr1_3:51370828-51370847 None:intergenic 55.0%
GACGAAGAATCAGACGTGCG+TGG + chr1_3:51371437-51371456 None:intergenic 55.0%
CTCGGCGTGTTTGGCGAAAA+TGG + chr1_3:51371567-51371586 None:intergenic 55.0%
TCTGCACCGGAGAAGATCAC+TGG + chr1_3:51371641-51371660 None:intergenic 55.0%
! CGGTGTTGAACCGGTTAAGC+CGG + chr1_3:51371723-51371742 None:intergenic 55.0%
! CGGCTTAACCGGTTCAACAC+CGG - chr1_3:51371721-51371740 Msa0123980:intron 55.0%
! GGAGAGAACCGGTGTTGAAC+CGG + chr1_3:51371732-51371751 None:intergenic 55.0%
! TTAGTGGGCAACAGGTGGTC+CGG - chr1_3:51372392-51372411 Msa0123980:intron 55.0%
GCCAGTGTCACGGTAAAGTG+AGG - chr1_3:51373302-51373321 Msa0123980:intron 55.0%
GCCTCACTTTACCGTGACAC+TGG + chr1_3:51373306-51373325 None:intergenic 55.0%
AGACAATTCTCCGGGCACAG+AGG - chr1_3:51373340-51373359 Msa0123980:intron 55.0%
CGGGCACAGAGGAAAGTCTT+AGG - chr1_3:51373351-51373370 Msa0123980:intron 55.0%
TTACGGTGTAGGCAGGCAGT+GGG - chr1_3:51373380-51373399 Msa0123980:intron 55.0%
GGAGCTACTGCTGCTGTGAT+TGG - chr1_3:51374336-51374355 Msa0123980:intron 55.0%
GGACTCTTACCAAATCGCGG+GGG - chr1_3:51375573-51375592 Msa0123980:intron 55.0%
ACTCTCCTCCACGGTGGAAC+TGG - chr1_3:51370817-51370836 Msa0123980:CDS 60.0%
GAATGCCAGTTCCACCGTGG+AGG + chr1_3:51370825-51370844 None:intergenic 60.0%
TTCGCCAAACACGCCGAGCT+CGG - chr1_3:51371569-51371588 Msa0123980:intron 60.0%
TGAACCGAGCTCGGCGTGTT+TGG + chr1_3:51371576-51371595 None:intergenic 60.0%
GCACCGGAGAAGATCACTGG+TGG + chr1_3:51371638-51371657 None:intergenic 60.0%
GTTACGGTGTAGGCAGGCAG+TGG - chr1_3:51373379-51373398 Msa0123980:intron 60.0%
TACGGTGTAGGCAGGCAGTG+GGG - chr1_3:51373381-51373400 Msa0123980:intron 60.0%
! AGCTAGCCTCCCTGCTGTTC+TGG + chr1_3:51374477-51374496 None:intergenic 60.0%
AGAACAGCAGGGAGGCTAGC+TGG - chr1_3:51374476-51374495 Msa0123980:intron 60.0%
ATCCTGGCCCATCAACTCGG+AGG - chr1_3:51375082-51375101 Msa0123980:intron 60.0%
CAGGCCCCTGCCGTAAAGAA+TGG - chr1_3:51375468-51375487 Msa0123980:intron 60.0%
CAGACTCTGCTTCGCCGCCT+CGG - chr1_3:51370855-51370874 Msa0123980:CDS 65.0%
! CAGCAGGGAGGCTAGCTGGA+CGG - chr1_3:51374480-51374499 Msa0123980:intron 65.0%
! AGCAGGGAGGCTAGCTGGAC+GGG - chr1_3:51374481-51374500 Msa0123980:intron 65.0%
! AGGCTAGCTGGACGGGCAGT+TGG - chr1_3:51374488-51374507 Msa0123980:intron 65.0%
!! TGCCTCCGAGTTGATGGGCC+AGG + chr1_3:51375087-51375106 Msa0123990:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51369902 51376535 51369902 ID=Msa0123980;Name=Msa0123980
chr1_3 mRNA 51369902 51376535 51369902 ID=Msa0123980-mRNA-1;Parent=Msa0123980;Name=Msa0123980-mRNA-1;_AED=0.20;_eAED=0.20;_QI=449|0.85|0.87|1|0.71|0.62|8|296|232
chr1_3 exon 51369902 51370301 51369902 ID=Msa0123980-mRNA-1:exon:15708;Parent=Msa0123980-mRNA-1
chr1_3 exon 51370816 51371038 51370816 ID=Msa0123980-mRNA-1:exon:15707;Parent=Msa0123980-mRNA-1
chr1_3 exon 51371126 51371181 51371126 ID=Msa0123980-mRNA-1:exon:15706;Parent=Msa0123980-mRNA-1
chr1_3 exon 51371299 51371431 51371299 ID=Msa0123980-mRNA-1:exon:15705;Parent=Msa0123980-mRNA-1
chr1_3 exon 51371866 51371987 51371866 ID=Msa0123980-mRNA-1:exon:15704;Parent=Msa0123980-mRNA-1
chr1_3 exon 51372080 51372242 51372080 ID=Msa0123980-mRNA-1:exon:15703;Parent=Msa0123980-mRNA-1
chr1_3 exon 51373692 51373753 51373692 ID=Msa0123980-mRNA-1:exon:15702;Parent=Msa0123980-mRNA-1
chr1_3 exon 51376251 51376535 51376251 ID=Msa0123980-mRNA-1:exon:15701;Parent=Msa0123980-mRNA-1
chr1_3 five_prime_UTR 51376251 51376535 51376251 ID=Msa0123980-mRNA-1:five_prime_utr;Parent=Msa0123980-mRNA-1
chr1_3 five_prime_UTR 51373692 51373753 51373692 ID=Msa0123980-mRNA-1:five_prime_utr;Parent=Msa0123980-mRNA-1
chr1_3 five_prime_UTR 51372141 51372242 51372141 ID=Msa0123980-mRNA-1:five_prime_utr;Parent=Msa0123980-mRNA-1
chr1_3 CDS 51372080 51372140 51372080 ID=Msa0123980-mRNA-1:cds;Parent=Msa0123980-mRNA-1
chr1_3 CDS 51371866 51371987 51371866 ID=Msa0123980-mRNA-1:cds;Parent=Msa0123980-mRNA-1
chr1_3 CDS 51371299 51371431 51371299 ID=Msa0123980-mRNA-1:cds;Parent=Msa0123980-mRNA-1
chr1_3 CDS 51371126 51371181 51371126 ID=Msa0123980-mRNA-1:cds;Parent=Msa0123980-mRNA-1
chr1_3 CDS 51370816 51371038 51370816 ID=Msa0123980-mRNA-1:cds;Parent=Msa0123980-mRNA-1
chr1_3 CDS 51370198 51370301 51370198 ID=Msa0123980-mRNA-1:cds;Parent=Msa0123980-mRNA-1
chr1_3 three_prime_UTR 51369902 51370197 51369902 ID=Msa0123980-mRNA-1:three_prime_utr;Parent=Msa0123980-mRNA-1
Gene Sequence

>Msa0123980

ATGCTGGGATTTTCATTTGGAGAAATATTTCTGTTGCTGGGAGCTACTGCTGCTGTGATTGGTCCAAAGGATTTGCCAATGATATCCAGAACAGCAGGGAGGCTAGCTGGACGGGCAGTTGGATATGTACAATTGGCCCGTGGACAGTTTGATTCTGTTATGCAGCGATCTCAAGTTAACCAGGTTCATAAGGAACTTCAGGAAACAATGGCACAGCTAGAGGCCATTCGTCATGAAATTGGAAGCATATCATTCATAAATCCTGGCCCATCAACTCGGAGGCATGATAATCTTGACCAGGCATCTATCTCAGATGACGACAGAAAACCTGAATATGCTGGGGTGAATAACTCAATATCCTCTCATACCAAGGATTCAACTTCATTGCCATCCAAATCATTAAATATGCAAAGTCAAGCAACTGCTTATGCAAGTTTGGCACAGGCCCCTGCCGTAAAGAATGGTTCATCGGCAAATAGCACTGAAGTTGAGGATGTTAAAGTTGGTCTGCAGCTTATTGTCATGCCAGTTTCTGCTGAAAATACTGGACTCTTACCAAATCGCGGGGGTAATAATAATTTTTGCTGTGTAGTTGGAGCTGATTTGAAAGGATCTGACATAGTTCAAGAAGCAATTTTGGAGGCAGAGGTAGCTCATAATGCAAAGGAATTCTTTTCACAGCCCCAAAATCAAATATGA
Protein sequence

>Msa0123980

MLGFSFGEIFLLLGATAAVIGPKDLPMISRTAGRLAGRAVGYVQLARGQFDSVMQRSQVNQVHKELQETMAQLEAIRHEIGSISFINPGPSTRRHDNLDQASISDDDRKPEYAGVNNSISSHTKDSTSLPSKSLNMQSQATAYASLAQAPAVKNGSSANSTEVEDVKVGLQLIVMPVSAENTGLLPNRGGNNNFCCVVGADLKGSDIVQEAILEAEVAHNAKEFFSQPQNQI*