AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0892570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892570 MtrunA17_Chr6g0475211 89.195 472 50 1 1 471 1 472 0.0 807
Msa0892570 MtrunA17_Chr6g0475211 90.323 93 7 1 532 622 442 534 3.48e-45 168
Msa0892570 MtrunA17_Chr3g0078341 84.534 472 68 3 1 471 1 468 0.0 787
Msa0892570 MtrunA17_Chr3g0078341 97.590 83 2 0 540 622 448 530 8.66e-45 167
Msa0892570 MtrunA17_Chr6g0482641 58.868 265 80 5 140 403 46 282 3.41e-100 307
Msa0892570 MtrunA17_Chr6g0476071 45.581 215 69 7 241 451 3 173 1.06e-45 159
Msa0892570 MtrunA17_Chr6g0476081 72.727 77 20 1 540 616 11 86 7.92e-31 115
Msa0892570 MtrunA17_Chr6g0450581 32.895 228 111 5 217 440 29 218 4.27e-27 112
Msa0892570 MtrunA17_Chr6g0450581 38.028 142 78 3 488 619 166 307 3.02e-18 85.9
Msa0892570 MtrunA17_Chr1g0149081 45.299 117 61 1 335 451 22 135 2.93e-24 99.0
Msa0892570 MtrunA17_Chr7g0223571 59.091 88 29 2 541 622 1 87 5.71e-24 96.7
Msa0892570 MtrunA17_Chr1g0149091 60.000 75 27 1 542 613 23 97 1.87e-23 95.1
Msa0892570 MtrunA17_Chr1g0149901 60.000 75 27 1 542 613 130 204 1.87e-21 93.2
Msa0892570 MtrunA17_Chr1g0149901 50.000 92 44 1 332 423 20 109 1.67e-19 87.4
Msa0892570 MtrunA17_Chr6g0450541 51.807 83 37 1 540 619 7 89 3.17e-21 88.6
Msa0892570 MtrunA17_Chr1g0149891 60.000 75 27 1 542 613 257 331 1.02e-20 94.0
Msa0892570 MtrunA17_Chr1g0149891 44.348 115 55 2 316 423 124 236 5.44e-19 88.6
Msa0892570 MtrunA17_Chr6g0482631 48.718 117 15 3 541 614 1 115 2.70e-20 86.7
Msa0892570 MtrunA17_Chr1g0159581 49.398 83 39 1 540 619 123 205 1.92e-17 81.3
Msa0892570 MtrunA17_Chr1g0159581 47.619 84 41 2 345 425 30 113 5.14e-15 74.3
Msa0892570 MtrunA17_Chr6g0450531 36.036 111 55 3 321 428 19 116 2.58e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892570 AT5G51740.1 51.752 371 154 5 105 471 31 380 1.66e-126 380
Msa0892570 AT5G51740.1 70.213 94 24 3 532 622 350 442 7.41e-31 126
Msa0892570 AT5G51740.2 51.752 371 154 5 105 471 74 423 3.81e-126 381
Msa0892570 AT5G51740.2 70.213 94 24 3 532 622 393 485 1.26e-30 126
Msa0892570 AT5G51740.3 53.429 350 139 4 105 451 74 402 5.18e-126 378

Find 145 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACCTGGGTATTTGAATT+TGG 0.109281 6_1:+73051469 Msa0892570:CDS
TCCTAAGAGGTTAGGGAAAA+TGG 0.112500 6_1:+73051637 Msa0892570:CDS
GCAATCTGGGTATTTGAATT+TGG 0.114800 6_1:+73051376 Msa0892570:CDS
ATGAGGTTCTTGATGATAAA+TGG 0.155660 6_1:+73052251 Msa0892570:CDS
TCCAAAGGTGTTAGCTTTAA+TGG 0.157644 6_1:+73051692 Msa0892570:CDS
TGGATTGAATTGGGAGATTT+TGG 0.167567 6_1:+73052336 Msa0892570:CDS
TCTAAAGATGCTAGCTTTAA+TGG 0.175399 6_1:+73051401 Msa0892570:CDS
AACAAAGGTGCTAACTTTAA+TGG 0.183185 6_1:+73051494 Msa0892570:CDS
TGTCAAGGTGGTAACTTTAA+TGG 0.209828 6_1:+73051593 Msa0892570:CDS
GCTCTTGAGTTATCTCGTTT+TGG 0.223589 6_1:-73053410 None:intergenic
CAATCTGGGTATTTGAATTT+GGG 0.238019 6_1:+73051377 Msa0892570:CDS
TAAGGATTTGATATGTTAAT+AGG 0.244723 6_1:+73055415 Msa0892570:three_prime_UTR
TTGAGATAAATAAGAATATT+GGG 0.260342 6_1:+73051663 Msa0892570:CDS
TTTGAGATAAATAAGAATAT+TGG 0.272846 6_1:+73051662 Msa0892570:CDS
ATCCTAACTCTCACACTTTC+AGG 0.275058 6_1:-73052055 None:intergenic
ATGAATAGTGTGGGAGAAAA+TGG 0.276100 6_1:-73051146 None:intergenic
GGATTCTGAAACCAATTCTT+TGG 0.281604 6_1:-73051836 None:intergenic
GCAGAGATAGCAACTATTAT+TGG 0.282923 6_1:+73052448 Msa0892570:CDS
GGTTCAGAAGAGTAGGAAAA+AGG 0.286020 6_1:+73052273 Msa0892570:CDS
AAATGTGTTCGCTTCGTATA+AGG 0.292798 6_1:-73051935 None:intergenic
TCATCTTCGGCATTCCTTCC+TGG 0.301531 6_1:+73053667 Msa0892570:CDS
CGCATTTGGATGGATTGAAT+TGG 0.304915 6_1:+73052326 Msa0892570:CDS
AAACCTGGGTATTTGAATTT+GGG 0.315099 6_1:+73051470 Msa0892570:CDS
TGTGTATGTAAATGTGAATT+TGG 0.317129 6_1:+73055382 Msa0892570:three_prime_UTR
CCATCCAAATGCGACGTATA+AGG 0.317832 6_1:-73052316 None:intergenic
AACCAATTCTTTGGCCCTCT+TGG 0.319495 6_1:-73051827 None:intergenic
TGGTGTTGAAGGATTTCTTT+AGG 0.322830 6_1:+73055276 Msa0892570:CDS
TCTTCAATTCCTAAGAGGTT+AGG 0.330856 6_1:+73051629 Msa0892570:CDS
TGGGAAGATAGTCGTGTTTA+CGG 0.331309 6_1:+73052399 Msa0892570:CDS
CCAAAGGTGTTAGCTTTAAT+GGG 0.339118 6_1:+73051693 Msa0892570:CDS
ACAAAGGTGCTAACTTTAAT+GGG 0.341306 6_1:+73051495 Msa0892570:CDS
TTTCTTGGTTCTTTCAATCA+TGG 0.343833 6_1:+73051253 Msa0892570:exon
GACATAGTGTTGACAATATC+AGG 0.345694 6_1:-73052916 None:intergenic
AAGAGATGGAGAAGAGTCTT+GGG 0.345827 6_1:+73051972 Msa0892570:CDS
CTAAAGATGCTAGCTTTAAT+GGG 0.347058 6_1:+73051402 Msa0892570:CDS
ACACTTTCAGGATGCATTGC+AGG 0.348683 6_1:-73052043 None:intergenic
GCAACCTTATACGTCGCATT+TGG 0.350333 6_1:+73052312 Msa0892570:CDS
GTCAAGGTGGTAACTTTAAT+GGG 0.361635 6_1:+73051594 Msa0892570:CDS
AGACTCTTCTCCATCTCTTT+CGG 0.364887 6_1:-73051968 None:intergenic
TCTTCGATTTCTAATAGATT+AGG 0.367132 6_1:+73051530 Msa0892570:CDS
AGCCAAGAGGGCCAAAGAAT+TGG 0.368828 6_1:+73051825 Msa0892570:CDS
AAGAAAACGAGCAGAATTAC+TGG 0.372401 6_1:+73055195 Msa0892570:CDS
CCCATTAAAGCTAACACCTT+TGG 0.373919 6_1:-73051693 None:intergenic
CTTCAATTCCTAAGAGGTTA+GGG 0.379836 6_1:+73051630 Msa0892570:CDS
GATTGCAAAATTCTGTTACT+AGG 0.384217 6_1:-73051359 None:intergenic
CCTAAGAGGTTAGGGAAAAT+GGG 0.389385 6_1:+73051638 Msa0892570:CDS
TGGTGGCATTTCCCACAGTT+GGG 0.400111 6_1:-73055351 None:intergenic
CATCTTCTCAGCACTGTGTC+TGG 0.400313 6_1:-73052839 None:intergenic
GCTTCAGAAAATTCTGTGTT+TGG 0.406389 6_1:+73052151 Msa0892570:CDS
AGAGGAAAGCTTGTTCTTGA+TGG 0.407337 6_1:+73051287 Msa0892570:CDS
CATCAAGAACCTCATCTTCC+CGG 0.410729 6_1:-73052243 None:intergenic
GAATTTGGTTTCATTTACTA+AGG 0.415874 6_1:+73055397 Msa0892570:three_prime_UTR
AAGGGAAAGTTGGAGGGAAT+TGG 0.419080 6_1:+73052218 Msa0892570:CDS
GCATTTGGATGGATTGAATT+GGG 0.421702 6_1:+73052327 Msa0892570:CDS
GGGAAGATAGTCGTGTTTAC+GGG 0.423649 6_1:+73052400 Msa0892570:CDS
AGAGAAGGACATGGTGTTGA+AGG 0.427494 6_1:+73055265 Msa0892570:CDS
TTTACATACACAGACAAGTA+TGG 0.429888 6_1:-73055371 None:intergenic
AGAATTGGTTTCAGAATCCT+AGG 0.434255 6_1:+73051840 Msa0892570:CDS
ACTGAAAATGAAGGGAAAGT+TGG 0.438682 6_1:+73052208 Msa0892570:CDS
AGGGGAAAGGGGAAGAAGAA+TGG 0.443081 6_1:-73051040 None:intergenic
GTTGAAGAGAGGGTTGAGTA+AGG 0.449933 6_1:+73052102 Msa0892570:CDS
TGGTTCTTTCAATCATGGCT+TGG 0.451356 6_1:+73051258 Msa0892570:exon
ACCTAAAGTCTACGAAAAGT+TGG 0.458356 6_1:+73055117 Msa0892570:CDS
TGAGGTTCTTGATGATAAAT+GGG 0.460396 6_1:+73052252 Msa0892570:CDS
TTTGGTGGTGAAGGATCCTA+TGG 0.460965 6_1:+73052354 Msa0892570:CDS
TATTTCGCTACTCATCCATC+TGG 0.461058 6_1:+73055172 Msa0892570:CDS
CCGTTGCTGTGTATCATCTT+CGG 0.462884 6_1:+73053654 Msa0892570:CDS
GGTTTCAAAATTCTCGAACT+AGG 0.469095 6_1:-73051452 None:intergenic
ATGGTGGCATTTCCCACAGT+TGG 0.471425 6_1:-73055352 None:intergenic
AAAGAGATGGAGAAGAGTCT+TGG 0.473631 6_1:+73051971 Msa0892570:CDS
AATAATTACCTTCTGGAGAA+AGG 0.473771 6_1:-73052958 None:intergenic
ATCTAAAAGCTTAGAATCGC+AGG 0.475247 6_1:-73055149 None:intergenic
AGAATTACTGGCTCAAGCTC+AGG 0.477979 6_1:+73055207 Msa0892570:CDS
AGAAGATGACAAAGAATATG+TGG 0.484136 6_1:+73052854 Msa0892570:CDS
ATTGGTGTAGTGGTAGGTTC+TGG 0.484373 6_1:+73051872 Msa0892570:CDS
AAGTTGGAGGGAATTGGCAC+CGG 0.485472 6_1:+73052224 Msa0892570:CDS
CCTTATACGTCGCATTTGGA+TGG 0.493369 6_1:+73052316 Msa0892570:CDS
AATAATAAGAATATTAGAGT+TGG 0.496382 6_1:+73051569 Msa0892570:CDS
TTTACTTGTGAAAGGGGAAA+GGG 0.498033 6_1:-73051052 None:intergenic
AATCCTAGGCATGTTATGAT+TGG 0.503650 6_1:+73051854 Msa0892570:CDS
AATGCAACACTCAGCATGCC+AGG 0.503686 6_1:-73053685 None:intergenic
GTTATTGATTGAAGCATGAA+AGG 0.505204 6_1:-73051172 None:intergenic
CAAGTCCATACAAGGCATCC+AGG 0.512539 6_1:-73053453 None:intergenic
ATCCTGAAAGTGTGAGAGTT+AGG 0.512578 6_1:+73052053 Msa0892570:CDS
AATGCATTGACTGAAAATGA+AGG 0.512873 6_1:+73052199 Msa0892570:CDS
CCTAAAGTCTACGAAAAGTT+GGG 0.514744 6_1:+73055118 Msa0892570:CDS
TTATCGAAGCGTTGAAGAGA+GGG 0.518421 6_1:+73052092 Msa0892570:CDS
AATATTAGAGTTGGTTGTCA+AGG 0.519986 6_1:+73051578 Msa0892570:CDS
GGTGGCATTTCCCACAGTTG+GGG 0.529653 6_1:-73055350 None:intergenic
ATAAATGGGTTCAGAAGAGT+AGG 0.531439 6_1:+73052266 Msa0892570:CDS
AGTTGGAGGGAATTGGCACC+GGG 0.532756 6_1:+73052225 Msa0892570:CDS
TGAAAGGAAGATGAATAGTG+TGG 0.534353 6_1:-73051156 None:intergenic
TGAGATAAATAAGAATATTG+GGG 0.535578 6_1:+73051664 Msa0892570:CDS
TGCCACACGTGGATCGTAGC+CGG 0.536111 6_1:-73055095 None:intergenic
ATTAGAGTTGGTTGTCAAGG+TGG 0.541340 6_1:+73051581 Msa0892570:CDS
CTTCCCACCAGGTAAGCAAA+AGG 0.542507 6_1:-73052383 None:intergenic
GATAAATAAGAATATTGGGG+TGG 0.543034 6_1:+73051667 Msa0892570:CDS
AATATTGGGGTGGGTTCCAA+AGG 0.550451 6_1:+73051677 Msa0892570:CDS
TACAGCTACCTTTCTCCAGA+AGG 0.550544 6_1:+73052950 Msa0892570:CDS
CTTCTATTAGTTGCATCCGC+CGG 0.553436 6_1:+73055076 Msa0892570:CDS
GAAAATGAAGGGAAAGTTGG+AGG 0.559808 6_1:+73052211 Msa0892570:CDS
GAGCGAGTTTGAGAAGATGA+AGG 0.561104 6_1:+73051997 Msa0892570:CDS
AAGCAAAAGGCATTAACCAT+AGG 0.561244 6_1:-73052370 None:intergenic
ATAAATAAGAATATTGGGGT+GGG 0.563572 6_1:+73051668 Msa0892570:CDS
TTTAGGAGATTAGACAAAAG+GGG 0.565002 6_1:+73051737 Msa0892570:CDS
GTTATGATTGGTGTAGTGGT+AGG 0.565631 6_1:+73051866 Msa0892570:CDS
ACACCAATCATAACATGCCT+AGG 0.568681 6_1:-73051857 None:intergenic
GAAATTGAAGCTGATTACAT+TGG 0.569179 6_1:+73055052 Msa0892570:CDS
TATTTGAATTTGGGTAACAA+AGG 0.571172 6_1:+73051479 Msa0892570:CDS
GGTTGAGTAAGGAGAATGTG+TGG 0.571308 6_1:+73052113 Msa0892570:CDS
CTGTGTTTGGTGAAGAAAGT+GGG 0.573793 6_1:+73052164 Msa0892570:CDS
AGGTGTGTGATTTATAAAGA+AGG 0.577421 6_1:-73051098 None:intergenic
ACTGGCTCAAGCTCAGGTGA+TGG 0.577941 6_1:+73055213 Msa0892570:CDS
TCTGTGTTTGGTGAAGAAAG+TGG 0.579845 6_1:+73052163 Msa0892570:CDS
GAGTTTGAGAAGATGAAGGC+GGG 0.581578 6_1:+73052001 Msa0892570:CDS
TTACCCAAATTCAAATACCC+AGG 0.585931 6_1:-73051473 None:intergenic
ATGCATTGACTGAAAATGAA+GGG 0.590623 6_1:+73052200 Msa0892570:CDS
CATAGTCAGAGGTGTAAACT+CGG 0.597056 6_1:-73053382 None:intergenic
GAAAGGAAGATGAATAGTGT+GGG 0.597604 6_1:-73051155 None:intergenic
CAACACTCAGCATGCCAGGA+AGG 0.598535 6_1:-73053681 None:intergenic
GCATGTTATGATTGGTGTAG+TGG 0.600913 6_1:+73051862 Msa0892570:CDS
AGCAACTATTATTGGACATG+AGG 0.602186 6_1:+73052456 Msa0892570:CDS
ATTATCGAAGCGTTGAAGAG+AGG 0.605086 6_1:+73052091 Msa0892570:CDS
ACAGACAAGTGCCCCAACTG+TGG 0.607175 6_1:+73055339 Msa0892570:three_prime_UTR
ATCATGGCTTGGTATAGAAG+AGG 0.608651 6_1:+73051269 Msa0892570:exon
CGAGTTTGAGAAGATGAAGG+CGG 0.609178 6_1:+73052000 Msa0892570:CDS
GAAGATGACAAAGAATATGT+GGG 0.612484 6_1:+73052855 Msa0892570:CDS
GAATTGGCACCGGGAAGATG+AGG 0.612493 6_1:+73052234 Msa0892570:CDS
CAGACAAGTGCCCCAACTGT+GGG 0.616987 6_1:+73055340 Msa0892570:three_prime_UTR
AAAATGAAGGGAAAGTTGGA+GGG 0.619844 6_1:+73052212 Msa0892570:CDS
TGATTAGGTTGGACATGCTG+TGG 0.626030 6_1:+73052816 Msa0892570:intron
ATTTGACTGTAGTATGAGCA+TGG 0.626536 6_1:+73053326 Msa0892570:intron
TTACTTGTGAAAGGGGAAAG+GGG 0.626771 6_1:-73051051 None:intergenic
AACACGACTATCTTCCCACC+AGG 0.637312 6_1:-73052394 None:intergenic
ACAGCAACGGCATTGCACAC+AGG 0.640455 6_1:-73053641 None:intergenic
CGCCGGCTACGATCCACGTG+TGG 0.642188 6_1:+73055093 Msa0892570:CDS
ATATATAAGACTGTAAGAGA+AGG 0.650562 6_1:+73055250 Msa0892570:CDS
AGAGATGGAGAAGAGTCTTG+GGG 0.653875 6_1:+73051973 Msa0892570:CDS
TAGACTTTAGGTGCCACACG+TGG 0.667217 6_1:-73055106 None:intergenic
CCGAAGATGATACACAGCAA+CGG 0.688080 6_1:-73053654 None:intergenic
ACATACACAGACAAGTATGG+TGG 0.691543 6_1:-73055368 None:intergenic
CACACGTGGATCGTAGCCGG+CGG 0.706408 6_1:-73055092 None:intergenic
GTTTGGTGAAGAAAGTGGGA+AGG 0.710512 6_1:+73052168 Msa0892570:CDS
ATAGTGTGGGAGAAAATGGA+AGG 0.715597 6_1:-73051142 None:intergenic
AAGACTGTAAGAGAAGGACA+TGG 0.732952 6_1:+73055256 Msa0892570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATTTATATTTATTA+TGG + chr6_1:73054980-73054999 Msa0892570:intron 0.0%
!!! AATTTTGATTTATCATATAT+TGG + chr6_1:73054194-73054213 Msa0892570:intron 10.0%
!!! AAAATGTACAAATTTAAAAT+TGG - chr6_1:73054641-73054660 None:intergenic 10.0%
!! CTGAAAAATTATAAAAAAAT+TGG - chr6_1:73055028-73055047 None:intergenic 10.0%
!!! CAATTTTTTTATAATTTTTC+AGG + chr6_1:73055026-73055045 Msa0892570:intron 10.0%
!! AATAATAAGAATATTAGAGT+TGG + chr6_1:73051569-73051588 Msa0892570:CDS 15.0%
!!! TTTGAGATAAATAAGAATAT+TGG + chr6_1:73051662-73051681 Msa0892570:CDS 15.0%
!! TTGAGATAAATAAGAATATT+GGG + chr6_1:73051663-73051682 Msa0892570:CDS 15.0%
!!! TTGAAGTTAATAAGAATTTT+AGG + chr6_1:73051762-73051781 Msa0892570:CDS 15.0%
!!! TTTTTATAACTGTGTATTTT+GGG + chr6_1:73051897-73051916 Msa0892570:CDS 15.0%
!!! TTTGATTTGTTTAACTTATT+AGG + chr6_1:73052485-73052504 Msa0892570:intron 15.0%
!! TTTATTAAGCAATATGAAAT+TGG + chr6_1:73054062-73054081 Msa0892570:intron 15.0%
!!! ATTGGAAATTTTATTTTAGT+TGG + chr6_1:73054080-73054099 Msa0892570:intron 15.0%
!! ATAACAATTATAAGTGTTTA+TGG - chr6_1:73054279-73054298 None:intergenic 15.0%
!! ATATTGAAAAGAAGATTAAA+CGG - chr6_1:73054771-73054790 None:intergenic 15.0%
!!! ATTTTAATTATACACAAATG+TGG + chr6_1:73054943-73054962 Msa0892570:intron 15.0%
!!! TTTTTTATAATTTTTCAGGA+TGG + chr6_1:73055030-73055049 Msa0892570:intron 15.0%
!! ATGAAAAAGTTGAAAATTTG+TGG - chr6_1:73051225-73051244 None:intergenic 20.0%
!!! TTTTCATCAATTTAGTTTCT+TGG + chr6_1:73051238-73051257 Msa0892570:five_prime_UTR 20.0%
!! TTCTAATAGATTAGGAAAAA+TGG + chr6_1:73051538-73051557 Msa0892570:CDS 20.0%
!! TCTAATAGATTAGGAAAAAT+GGG + chr6_1:73051539-73051558 Msa0892570:CDS 20.0%
!! TGAGATAAATAAGAATATTG+GGG + chr6_1:73051664-73051683 Msa0892570:CDS 20.0%
!!! GTTTTTATAACTGTGTATTT+TGG + chr6_1:73051896-73051915 Msa0892570:CDS 20.0%
!! TCAAATAAGTTAATCCAAAT+AGG - chr6_1:73052511-73052530 None:intergenic 20.0%
!! TTAAGCTATTTATTCAAACA+AGG + chr6_1:73052733-73052752 Msa0892570:intron 20.0%
!! CACGTTAAATATTAAGATAA+GGG + chr6_1:73053091-73053110 Msa0892570:intron 20.0%
!!! GGACTTTTATTAATTTTTGT+TGG - chr6_1:73053516-73053535 None:intergenic 20.0%
!! CAAATAAAGAAAGAAAACAT+TGG - chr6_1:73053958-73053977 None:intergenic 20.0%
!! TGGTATTCTTGTATAAATTA+AGG - chr6_1:73054137-73054156 None:intergenic 20.0%
!! AAATTCCAATTCGTATTTAT+AGG - chr6_1:73054179-73054198 None:intergenic 20.0%
!! GAATGAAATTAATGCAAATA+TGG - chr6_1:73054391-73054410 None:intergenic 20.0%
!! CCTATACAAATGAATTAATT+TGG - chr6_1:73054546-73054565 None:intergenic 20.0%
!! CCAAATTAATTCATTTGTAT+AGG + chr6_1:73054543-73054562 Msa0892570:intron 20.0%
!! TAAGGATTTGATATGTTAAT+AGG + chr6_1:73055415-73055434 Msa0892570:three_prime_UTR 20.0%
!!! ATTTTCTAGTCTAATTTGGT+TGG - chr6_1:73051014-73051033 None:intergenic 25.0%
!!! TGACATTTTCTAGTCTAATT+TGG - chr6_1:73051018-73051037 None:intergenic 25.0%
!! AAATGCTTTTACTTGTGAAA+GGG - chr6_1:73051062-73051081 None:intergenic 25.0%
!! AAAATGCTTTTACTTGTGAA+AGG - chr6_1:73051063-73051082 None:intergenic 25.0%
! TTTGATGAGTTCAAAAATGT+GGG - chr6_1:73051201-73051220 None:intergenic 25.0%
!! TTTTGATGAGTTCAAAAATG+TGG - chr6_1:73051202-73051221 None:intergenic 25.0%
! TATTTGAATTTGGGTAACAA+AGG + chr6_1:73051479-73051498 Msa0892570:CDS 25.0%
! TCTTCGATTTCTAATAGATT+AGG + chr6_1:73051530-73051549 Msa0892570:CDS 25.0%
! ATAAATAAGAATATTGGGGT+GGG + chr6_1:73051668-73051687 Msa0892570:CDS 25.0%
!!! ATTTTAGGAGATTAGACAAA+AGG + chr6_1:73051735-73051754 Msa0892570:CDS 25.0%
!!! TTTTAGGAGATTAGACAAAA+GGG + chr6_1:73051736-73051755 Msa0892570:CDS 25.0%
!! TTTAACTTATTAGGCCTATT+TGG + chr6_1:73052494-73052513 Msa0892570:intron 25.0%
! GAAACAATATATGATATGTC+TGG + chr6_1:73052579-73052598 Msa0892570:intron 25.0%
! AAGAGCAACAAAAATTCAAT+TGG - chr6_1:73053005-73053024 None:intergenic 25.0%
! GACTCATTTCATTGATATAT+AGG + chr6_1:73053036-73053055 Msa0892570:intron 25.0%
! GCACGTTAAATATTAAGATA+AGG + chr6_1:73053090-73053109 Msa0892570:intron 25.0%
! TAAGGGAAAAACATGAAATT+AGG + chr6_1:73053108-73053127 Msa0892570:intron 25.0%
! GAAAAATTATGTGTTTGAGT+TGG - chr6_1:73053302-73053321 None:intergenic 25.0%
!! TTTAAGAAACGGTTACATTT+TGG - chr6_1:73053537-73053556 None:intergenic 25.0%
! TAACCGTTTCTTAAAATCAA+GGG + chr6_1:73053542-73053561 Msa0892570:intron 25.0%
!!! TTCTCCATTTTGTTTTTGTT+TGG + chr6_1:73053747-73053766 Msa0892570:intron 25.0%
! CAAACCAAACAAAAACAAAA+TGG - chr6_1:73053754-73053773 None:intergenic 25.0%
!!! CATTTTGTTTTTGTTTGGTT+TGG + chr6_1:73053752-73053771 Msa0892570:intron 25.0%
! AACAGTGCAAATTATAAAAG+AGG - chr6_1:73053863-73053882 None:intergenic 25.0%
!! TCTTTCTTTATTTGTTGCTA+TGG + chr6_1:73053964-73053983 Msa0892570:intron 25.0%
!!! GTTTGTCATGGTATTTTTTA+TGG - chr6_1:73054157-73054176 None:intergenic 25.0%
! ACAAACCTATAAATACGAAT+TGG + chr6_1:73054171-73054190 Msa0892570:intron 25.0%
! ATTATAAGTGTTTATGGAGA+GGG - chr6_1:73054273-73054292 None:intergenic 25.0%
! AATTATAAGTGTTTATGGAG+AGG - chr6_1:73054274-73054293 None:intergenic 25.0%
! GTAAAGTAGTACAACTTAAT+GGG - chr6_1:73054306-73054325 None:intergenic 25.0%
! TGCAAATATGGATGTAATTT+CGG - chr6_1:73054379-73054398 None:intergenic 25.0%
!! CATTTACATTTGTTTCTTGT+TGG + chr6_1:73054722-73054741 Msa0892570:intron 25.0%
! ATATATAAGACTGTAAGAGA+AGG + chr6_1:73055250-73055269 Msa0892570:CDS 25.0%
! TGTGTATGTAAATGTGAATT+TGG + chr6_1:73055382-73055401 Msa0892570:three_prime_UTR 25.0%
!! GAATTTGGTTTCATTTACTA+AGG + chr6_1:73055397-73055416 Msa0892570:three_prime_UTR 25.0%
!!! AGGTTTTAAATCATCAAAGA+AGG + chr6_1:73055435-73055454 Msa0892570:three_prime_UTR 25.0%
! AATGCTTTTACTTGTGAAAG+GGG - chr6_1:73051061-73051080 None:intergenic 30.0%
AGGTGTGTGATTTATAAAGA+AGG - chr6_1:73051101-73051120 None:intergenic 30.0%
!! GGATGTAGAAAAAGTATTCA+CGG - chr6_1:73051124-73051143 None:intergenic 30.0%
! GTTATTGATTGAAGCATGAA+AGG - chr6_1:73051175-73051194 None:intergenic 30.0%
! TTTCTTGGTTCTTTCAATCA+TGG + chr6_1:73051253-73051272 Msa0892570:exon 30.0%
!! TCTTGATGGTTTTCATAACT+TGG + chr6_1:73051301-73051320 Msa0892570:CDS 30.0%
! TTTTCATAACTTGGCTTCTA+GGG + chr6_1:73051310-73051329 Msa0892570:CDS 30.0%
! AGGCTGAAAAATTGGATTTT+GGG - chr6_1:73051342-73051361 None:intergenic 30.0%
! TAGGCTGAAAAATTGGATTT+TGG - chr6_1:73051343-73051362 None:intergenic 30.0%
GATTGCAAAATTCTGTTACT+AGG - chr6_1:73051362-73051381 None:intergenic 30.0%
! AGTAACAGAATTTTGCAATC+TGG + chr6_1:73051362-73051381 Msa0892570:CDS 30.0%
! GTAACAGAATTTTGCAATCT+GGG + chr6_1:73051363-73051382 Msa0892570:CDS 30.0%
CAATCTGGGTATTTGAATTT+GGG + chr6_1:73051377-73051396 Msa0892570:CDS 30.0%
!! TCTAAAGATGCTAGCTTTAA+TGG + chr6_1:73051401-73051420 Msa0892570:CDS 30.0%
!! CTAAAGATGCTAGCTTTAAT+GGG + chr6_1:73051402-73051421 Msa0892570:CDS 30.0%
AAACCTGGGTATTTGAATTT+GGG + chr6_1:73051470-73051489 Msa0892570:CDS 30.0%
!! AACAAAGGTGCTAACTTTAA+TGG + chr6_1:73051494-73051513 Msa0892570:CDS 30.0%
!! ACAAAGGTGCTAACTTTAAT+GGG + chr6_1:73051495-73051514 Msa0892570:CDS 30.0%
! AATATTAGAGTTGGTTGTCA+AGG + chr6_1:73051578-73051597 Msa0892570:CDS 30.0%
GATAAATAAGAATATTGGGG+TGG + chr6_1:73051667-73051686 Msa0892570:CDS 30.0%
TTTAGGAGATTAGACAAAAG+GGG + chr6_1:73051737-73051756 Msa0892570:CDS 30.0%
! TTAAAATGCTGCACATTTTG+TGG - chr6_1:73051806-73051825 None:intergenic 30.0%
!! AACTGTGTATTTTGGGAATA+TGG + chr6_1:73051904-73051923 Msa0892570:CDS 30.0%
!! AATGCATTGACTGAAAATGA+AGG + chr6_1:73052199-73052218 Msa0892570:CDS 30.0%
!! ATGCATTGACTGAAAATGAA+GGG + chr6_1:73052200-73052219 Msa0892570:CDS 30.0%
! ATGAGGTTCTTGATGATAAA+TGG + chr6_1:73052251-73052270 Msa0892570:CDS 30.0%
! TGAGGTTCTTGATGATAAAT+GGG + chr6_1:73052252-73052271 Msa0892570:CDS 30.0%
CAACTGTTTGAGAGATATTA+CGG + chr6_1:73052557-73052576 Msa0892570:intron 30.0%
CTTAAGCGCTTATTTGATAA+AGG + chr6_1:73052690-73052709 Msa0892570:intron 30.0%
AGAAGATGACAAAGAATATG+TGG + chr6_1:73052854-73052873 Msa0892570:CDS 30.0%
GAAGATGACAAAGAATATGT+GGG + chr6_1:73052855-73052874 Msa0892570:CDS 30.0%
! AATAATTACCTTCTGGAGAA+AGG - chr6_1:73052961-73052980 None:intergenic 30.0%
AAGAAGGAATAATTACCTTC+TGG - chr6_1:73052968-73052987 None:intergenic 30.0%
GGTTATAAAGAGAGAAAAGA+AGG - chr6_1:73052984-73053003 None:intergenic 30.0%
! ATAGGTAATGTTTGTTAGAC+AGG + chr6_1:73053054-73053073 Msa0892570:intron 30.0%
ATGAAGTTTAGCTGAATTAG+TGG + chr6_1:73053141-73053160 Msa0892570:intron 30.0%
GTAACCGTTTCTTAAAATCA+AGG + chr6_1:73053541-73053560 Msa0892570:intron 30.0%
!! CAACCCTTGATTTTAAGAAA+CGG - chr6_1:73053548-73053567 None:intergenic 30.0%
TCGTATTTATAGGTTTGTCA+TGG - chr6_1:73054169-73054188 None:intergenic 30.0%
! AAAACATGGTTATGCCATTT+GGG - chr6_1:73054243-73054262 None:intergenic 30.0%
GGTAAAGTAGTACAACTTAA+TGG - chr6_1:73054307-73054326 None:intergenic 30.0%
AATTTGGTCTATCTCATACA+CGG - chr6_1:73054530-73054549 None:intergenic 30.0%
AACCATAATGAGTCTGATTT+CGG + chr6_1:73054663-73054682 Msa0892570:intron 30.0%
!!! GCTTCATTTTAACTTCTTTC+TGG + chr6_1:73054800-73054819 Msa0892570:intron 30.0%
TACACAAATGTGGTGAATTA+TGG + chr6_1:73054953-73054972 Msa0892570:intron 30.0%
GAAATTGAAGCTGATTACAT+TGG + chr6_1:73055052-73055071 Msa0892570:CDS 30.0%
TTTACATACACAGACAAGTA+TGG - chr6_1:73055374-73055393 None:intergenic 30.0%
TTTACTTGTGAAAGGGGAAA+GGG - chr6_1:73051055-73051074 None:intergenic 35.0%
! TTTTACTTGTGAAAGGGGAA+AGG - chr6_1:73051056-73051075 None:intergenic 35.0%
!! TGTAGAAAAAGTATTCACGG+AGG - chr6_1:73051121-73051140 None:intergenic 35.0%
ATGAATAGTGTGGGAGAAAA+TGG - chr6_1:73051149-73051168 None:intergenic 35.0%
GAAAGGAAGATGAATAGTGT+GGG - chr6_1:73051158-73051177 None:intergenic 35.0%
TGAAAGGAAGATGAATAGTG+TGG - chr6_1:73051159-73051178 None:intergenic 35.0%
! GTTTTCATAACTTGGCTTCT+AGG + chr6_1:73051309-73051328 Msa0892570:CDS 35.0%
CTGTTACTAGGCTGAAAAAT+TGG - chr6_1:73051350-73051369 None:intergenic 35.0%
GCAATCTGGGTATTTGAATT+TGG + chr6_1:73051376-73051395 Msa0892570:CDS 35.0%
GGTTTCAAAATTCTCGAACT+AGG - chr6_1:73051455-73051474 None:intergenic 35.0%
!!! AGTTCGAGAATTTTGAAACC+TGG + chr6_1:73051455-73051474 Msa0892570:CDS 35.0%
!!! GTTCGAGAATTTTGAAACCT+GGG + chr6_1:73051456-73051475 Msa0892570:CDS 35.0%
GAAACCTGGGTATTTGAATT+TGG + chr6_1:73051469-73051488 Msa0892570:CDS 35.0%
TTACCCAAATTCAAATACCC+AGG - chr6_1:73051476-73051495 None:intergenic 35.0%
TGTCAAGGTGGTAACTTTAA+TGG + chr6_1:73051593-73051612 Msa0892570:CDS 35.0%
GTCAAGGTGGTAACTTTAAT+GGG + chr6_1:73051594-73051613 Msa0892570:CDS 35.0%
! CGTTTTCTTCAATTCCTAAG+AGG + chr6_1:73051624-73051643 Msa0892570:CDS 35.0%
TCTTCAATTCCTAAGAGGTT+AGG + chr6_1:73051629-73051648 Msa0892570:CDS 35.0%
CTTCAATTCCTAAGAGGTTA+GGG + chr6_1:73051630-73051649 Msa0892570:CDS 35.0%
!! TCCAAAGGTGTTAGCTTTAA+TGG + chr6_1:73051692-73051711 Msa0892570:CDS 35.0%
!! CCAAAGGTGTTAGCTTTAAT+GGG + chr6_1:73051693-73051712 Msa0892570:CDS 35.0%
!!! TAGCTTTAATGGGTTTTCGT+CGG + chr6_1:73051703-73051722 Msa0892570:CDS 35.0%
!! GGATTCTGAAACCAATTCTT+TGG - chr6_1:73051839-73051858 None:intergenic 35.0%
! AGAATTGGTTTCAGAATCCT+AGG + chr6_1:73051840-73051859 Msa0892570:CDS 35.0%
AATCCTAGGCATGTTATGAT+TGG + chr6_1:73051854-73051873 Msa0892570:CDS 35.0%
AAATGTGTTCGCTTCGTATA+AGG - chr6_1:73051938-73051957 None:intergenic 35.0%
GCTTCAGAAAATTCTGTGTT+TGG + chr6_1:73052151-73052170 Msa0892570:CDS 35.0%
ACTGAAAATGAAGGGAAAGT+TGG + chr6_1:73052208-73052227 Msa0892570:CDS 35.0%
AAAATGAAGGGAAAGTTGGA+GGG + chr6_1:73052212-73052231 Msa0892570:CDS 35.0%
! ATAAATGGGTTCAGAAGAGT+AGG + chr6_1:73052266-73052285 Msa0892570:CDS 35.0%
GTTCAGAAGAGTAGGAAAAA+GGG + chr6_1:73052274-73052293 Msa0892570:CDS 35.0%
!! GCATTTGGATGGATTGAATT+GGG + chr6_1:73052327-73052346 Msa0892570:CDS 35.0%
! TGGATTGAATTGGGAGATTT+TGG + chr6_1:73052336-73052355 Msa0892570:CDS 35.0%
! ATTGAATTGGGAGATTTTGG+TGG + chr6_1:73052339-73052358 Msa0892570:CDS 35.0%
!! AAGCAAAAGGCATTAACCAT+AGG - chr6_1:73052373-73052392 None:intergenic 35.0%
GCAGAGATAGCAACTATTAT+TGG + chr6_1:73052448-73052467 Msa0892570:CDS 35.0%
AGCAACTATTATTGGACATG+AGG + chr6_1:73052456-73052475 Msa0892570:CDS 35.0%
!! GACATAGTGTTGACAATATC+AGG - chr6_1:73052919-73052938 None:intergenic 35.0%
! TTTTGACCTTCCCAATGATT+TGG + chr6_1:73053257-73053276 Msa0892570:intron 35.0%
AGGAATAGAGCCAAATCATT+GGG - chr6_1:73053270-73053289 None:intergenic 35.0%
!! ATGTGTTTGAGTTGGTCTTA+AGG - chr6_1:73053294-73053313 None:intergenic 35.0%
ATTTGACTGTAGTATGAGCA+TGG + chr6_1:73053326-73053345 Msa0892570:intron 35.0%
! CTCTTGAGTTATCTCGTTTT+GGG - chr6_1:73053412-73053431 None:intergenic 35.0%
! AATTATTTTCTGCACAGACC+TGG + chr6_1:73053435-73053454 Msa0892570:CDS 35.0%
CAAGAAACATGAAGGATGTA+TGG - chr6_1:73053576-73053595 None:intergenic 35.0%
AAACGCAACAAGAAACATGA+AGG - chr6_1:73053584-73053603 None:intergenic 35.0%
! GAAGTATTCATTAGCCCAAA+TGG + chr6_1:73054226-73054245 Msa0892570:intron 35.0%
GAAAACATGGTTATGCCATT+TGG - chr6_1:73054244-73054263 None:intergenic 35.0%
TACTAGAGAATTCATGCATC+AGG - chr6_1:73054328-73054347 None:intergenic 35.0%
TATGGATGTAATTTCGGAGT+AGG - chr6_1:73054373-73054392 None:intergenic 35.0%
GACATAGAACAAAGTTCTAC+AGG + chr6_1:73054427-73054446 Msa0892570:intron 35.0%
! ATTTGTTTCTTGTTGGACTG+TGG + chr6_1:73054729-73054748 Msa0892570:intron 35.0%
ACCTAAAGTCTACGAAAAGT+TGG + chr6_1:73055117-73055136 Msa0892570:CDS 35.0%
CCTAAAGTCTACGAAAAGTT+GGG + chr6_1:73055118-73055137 Msa0892570:CDS 35.0%
ATCTAAAAGCTTAGAATCGC+AGG - chr6_1:73055152-73055171 None:intergenic 35.0%
AAGAAAACGAGCAGAATTAC+TGG + chr6_1:73055195-73055214 Msa0892570:CDS 35.0%
! TGGTGTTGAAGGATTTCTTT+AGG + chr6_1:73055276-73055295 Msa0892570:CDS 35.0%
TTACTTGTGAAAGGGGAAAG+GGG - chr6_1:73051054-73051073 None:intergenic 40.0%
ATAGTGTGGGAGAAAATGGA+AGG - chr6_1:73051145-73051164 None:intergenic 40.0%
TGGTTCTTTCAATCATGGCT+TGG + chr6_1:73051258-73051277 Msa0892570:exon 40.0%
!! ATCATGGCTTGGTATAGAAG+AGG + chr6_1:73051269-73051288 Msa0892570:exon 40.0%
! AGAGGAAAGCTTGTTCTTGA+TGG + chr6_1:73051287-73051306 Msa0892570:CDS 40.0%
! ATTAGAGTTGGTTGTCAAGG+TGG + chr6_1:73051581-73051600 Msa0892570:CDS 40.0%
TCCTAAGAGGTTAGGGAAAA+TGG + chr6_1:73051637-73051656 Msa0892570:CDS 40.0%
CCTAAGAGGTTAGGGAAAAT+GGG + chr6_1:73051638-73051657 Msa0892570:CDS 40.0%
CCCATTAAAGCTAACACCTT+TGG - chr6_1:73051696-73051715 None:intergenic 40.0%
!!! CGTCGGTTTCGAAGAATTTT+AGG + chr6_1:73051720-73051739 Msa0892570:CDS 40.0%
! TGCAGCATTTTAAGCCAAGA+GGG + chr6_1:73051813-73051832 Msa0892570:CDS 40.0%
ACACCAATCATAACATGCCT+AGG - chr6_1:73051860-73051879 None:intergenic 40.0%
GCATGTTATGATTGGTGTAG+TGG + chr6_1:73051862-73051881 Msa0892570:CDS 40.0%
GTTATGATTGGTGTAGTGGT+AGG + chr6_1:73051866-73051885 Msa0892570:CDS 40.0%
!! GATTTTGATGCCGAAAGAGA+TGG + chr6_1:73051958-73051977 Msa0892570:CDS 40.0%
AGACTCTTCTCCATCTCTTT+CGG - chr6_1:73051971-73051990 None:intergenic 40.0%
AAAGAGATGGAGAAGAGTCT+TGG + chr6_1:73051971-73051990 Msa0892570:CDS 40.0%
AAGAGATGGAGAAGAGTCTT+GGG + chr6_1:73051972-73051991 Msa0892570:CDS 40.0%
!! AAGATGAAGGCGGGTTTTAA+GGG + chr6_1:73052010-73052029 Msa0892570:CDS 40.0%
! ATCCTGAAAGTGTGAGAGTT+AGG + chr6_1:73052053-73052072 Msa0892570:CDS 40.0%
ATCCTAACTCTCACACTTTC+AGG - chr6_1:73052058-73052077 None:intergenic 40.0%
!! ATTATCGAAGCGTTGAAGAG+AGG + chr6_1:73052091-73052110 Msa0892570:CDS 40.0%
!! TTATCGAAGCGTTGAAGAGA+GGG + chr6_1:73052092-73052111 Msa0892570:CDS 40.0%
! TCTGTGTTTGGTGAAGAAAG+TGG + chr6_1:73052163-73052182 Msa0892570:CDS 40.0%
! CTGTGTTTGGTGAAGAAAGT+GGG + chr6_1:73052164-73052183 Msa0892570:CDS 40.0%
GAAAATGAAGGGAAAGTTGG+AGG + chr6_1:73052211-73052230 Msa0892570:CDS 40.0%
GGTTCAGAAGAGTAGGAAAA+AGG + chr6_1:73052273-73052292 Msa0892570:CDS 40.0%
!! CGCATTTGGATGGATTGAAT+TGG + chr6_1:73052326-73052345 Msa0892570:CDS 40.0%
! GTTAATGCCTTTTGCTTACC+TGG + chr6_1:73052376-73052395 Msa0892570:CDS 40.0%
TGGGAAGATAGTCGTGTTTA+CGG + chr6_1:73052399-73052418 Msa0892570:CDS 40.0%
! AAGTCTTAACACTTGCTGCT+TGG + chr6_1:73052793-73052812 Msa0892570:intron 40.0%
AGCTGAATTAGTGGAACTAG+AGG + chr6_1:73053150-73053169 Msa0892570:intron 40.0%
GCTACACGACTCAATGTATA+GGG - chr6_1:73053229-73053248 None:intergenic 40.0%
TGCTACACGACTCAATGTAT+AGG - chr6_1:73053230-73053249 None:intergenic 40.0%
ATAGAGCCAAATCATTGGGA+AGG - chr6_1:73053266-73053285 None:intergenic 40.0%
CAGGAATAGAGCCAAATCAT+TGG - chr6_1:73053271-73053290 None:intergenic 40.0%
! CATAGTCAGAGGTGTAAACT+CGG - chr6_1:73053385-73053404 None:intergenic 40.0%
!! TTGAGTTATCTCGTTTTGGG+AGG - chr6_1:73053409-73053428 None:intergenic 40.0%
! GCTCTTGAGTTATCTCGTTT+TGG - chr6_1:73053413-73053432 None:intergenic 40.0%
AGTCATACCAAGTCCATACA+AGG - chr6_1:73053464-73053483 None:intergenic 40.0%
TGTCTGTTCAGTGTGTTTGT+TGG + chr6_1:73053929-73053948 Msa0892570:intron 40.0%
TCTCTGATTCTGTTCAGTGT+TGG + chr6_1:73054011-73054030 Msa0892570:intron 40.0%
CTCCGAAATCAGACTCATTA+TGG - chr6_1:73054668-73054687 None:intergenic 40.0%
GAAGATTAAACGGAAACCCT+AGG - chr6_1:73054761-73054780 None:intergenic 40.0%
TAACCAACCATGTTCTGACA+TGG + chr6_1:73054859-73054878 Msa0892570:intron 40.0%
AAAGTAGCCATGTCAGAACA+TGG - chr6_1:73054869-73054888 None:intergenic 40.0%
! CCCAACTTTTCGTAGACTTT+AGG - chr6_1:73055121-73055140 None:intergenic 40.0%
TATTTCGCTACTCATCCATC+TGG + chr6_1:73055172-73055191 Msa0892570:CDS 40.0%
AAGACTGTAAGAGAAGGACA+TGG + chr6_1:73055256-73055275 Msa0892570:CDS 40.0%
ACATACACAGACAAGTATGG+TGG - chr6_1:73055371-73055390 None:intergenic 40.0%
! CCCATTTTCCCTAACCTCTT+AGG - chr6_1:73051641-73051660 None:intergenic 45.0%
! AATATTGGGGTGGGTTCCAA+AGG + chr6_1:73051677-73051696 Msa0892570:CDS 45.0%
! GTGCAGCATTTTAAGCCAAG+AGG + chr6_1:73051812-73051831 Msa0892570:CDS 45.0%
AACCAATTCTTTGGCCCTCT+TGG - chr6_1:73051830-73051849 None:intergenic 45.0%
ATTGGTGTAGTGGTAGGTTC+TGG + chr6_1:73051872-73051891 Msa0892570:CDS 45.0%
AGAGATGGAGAAGAGTCTTG+GGG + chr6_1:73051973-73051992 Msa0892570:CDS 45.0%
GAGCGAGTTTGAGAAGATGA+AGG + chr6_1:73051997-73052016 Msa0892570:CDS 45.0%
CGAGTTTGAGAAGATGAAGG+CGG + chr6_1:73052000-73052019 Msa0892570:CDS 45.0%
GAGTTTGAGAAGATGAAGGC+GGG + chr6_1:73052001-73052020 Msa0892570:CDS 45.0%
!! GAAGATGAAGGCGGGTTTTA+AGG + chr6_1:73052009-73052028 Msa0892570:CDS 45.0%
!!! AGATGAAGGCGGGTTTTAAG+GGG + chr6_1:73052011-73052030 Msa0892570:CDS 45.0%
ACACTTTCAGGATGCATTGC+AGG - chr6_1:73052046-73052065 None:intergenic 45.0%
GTTGAAGAGAGGGTTGAGTA+AGG + chr6_1:73052102-73052121 Msa0892570:CDS 45.0%
GGTTGAGTAAGGAGAATGTG+TGG + chr6_1:73052113-73052132 Msa0892570:CDS 45.0%
! GTTTGGTGAAGAAAGTGGGA+AGG + chr6_1:73052168-73052187 Msa0892570:CDS 45.0%
AAGGGAAAGTTGGAGGGAAT+TGG + chr6_1:73052218-73052237 Msa0892570:CDS 45.0%
CATCAAGAACCTCATCTTCC+CGG - chr6_1:73052246-73052265 None:intergenic 45.0%
GCAACCTTATACGTCGCATT+TGG + chr6_1:73052312-73052331 Msa0892570:CDS 45.0%
CCATCCAAATGCGACGTATA+AGG - chr6_1:73052319-73052338 None:intergenic 45.0%
CCTTATACGTCGCATTTGGA+TGG + chr6_1:73052316-73052335 Msa0892570:CDS 45.0%
!!! TTGGGAGATTTTGGTGGTGA+AGG + chr6_1:73052345-73052364 Msa0892570:CDS 45.0%
!! TTTGGTGGTGAAGGATCCTA+TGG + chr6_1:73052354-73052373 Msa0892570:CDS 45.0%
! AATGCCTTTTGCTTACCTGG+TGG + chr6_1:73052379-73052398 Msa0892570:CDS 45.0%
! ATGCCTTTTGCTTACCTGGT+GGG + chr6_1:73052380-73052399 Msa0892570:CDS 45.0%
GGGAAGATAGTCGTGTTTAC+GGG + chr6_1:73052400-73052419 Msa0892570:CDS 45.0%
! ACACTTGCTGCTTGGTGATT+AGG + chr6_1:73052801-73052820 Msa0892570:intron 45.0%
! TTGCTGCTTGGTGATTAGGT+TGG + chr6_1:73052805-73052824 Msa0892570:intron 45.0%
!! TGATTAGGTTGGACATGCTG+TGG + chr6_1:73052816-73052835 Msa0892570:intron 45.0%
TACAGCTACCTTTCTCCAGA+AGG + chr6_1:73052950-73052969 Msa0892570:CDS 45.0%
!! GTTTGAGTTGGTCTTAAGGC+AGG - chr6_1:73053290-73053309 None:intergenic 45.0%
!! TTTTGGGAGGTCATAGTCAG+AGG - chr6_1:73053396-73053415 None:intergenic 45.0%
CCGAAGATGATACACAGCAA+CGG - chr6_1:73053657-73053676 None:intergenic 45.0%
CCGTTGCTGTGTATCATCTT+CGG + chr6_1:73053654-73053673 Msa0892570:CDS 45.0%
! TTTTCTTGCGTTTGCGTGTC+AGG + chr6_1:73053722-73053741 Msa0892570:CDS 45.0%
!! GAGAGGGCATTACGAAAACA+TGG - chr6_1:73054257-73054276 None:intergenic 45.0%
!! TTGGACTGTGGATTAGTCCT+AGG + chr6_1:73054741-73054760 Msa0892570:intron 45.0%
!! TGGACTGTGGATTAGTCCTA+GGG + chr6_1:73054742-73054761 Msa0892570:intron 45.0%
TAGCCATGTCAGAACATGGT+TGG - chr6_1:73054865-73054884 None:intergenic 45.0%
CTTCTATTAGTTGCATCCGC+CGG + chr6_1:73055076-73055095 Msa0892570:CDS 45.0%
! TCTGCTCGTTTTCTTCCAGA+TGG - chr6_1:73055190-73055209 None:intergenic 45.0%
!! AGAATTACTGGCTCAAGCTC+AGG + chr6_1:73055207-73055226 Msa0892570:CDS 45.0%
! AGAGAAGGACATGGTGTTGA+AGG + chr6_1:73055265-73055284 Msa0892570:CDS 45.0%
!! TGAAAAATTATAAAAAAATT+GGG - chr6_1:73055027-73055046 None:intergenic 5.0%
AGGGGAAAGGGGAAGAAGAA+TGG - chr6_1:73051043-73051062 None:intergenic 50.0%
AGCCAAGAGGGCCAAAGAAT+TGG + chr6_1:73051825-73051844 Msa0892570:CDS 50.0%
AAGTTGGAGGGAATTGGCAC+CGG + chr6_1:73052224-73052243 Msa0892570:CDS 50.0%
CTTCCCACCAGGTAAGCAAA+AGG - chr6_1:73052386-73052405 None:intergenic 50.0%
AACACGACTATCTTCCCACC+AGG - chr6_1:73052397-73052416 None:intergenic 50.0%
CATCTTCTCAGCACTGTGTC+TGG - chr6_1:73052842-73052861 None:intergenic 50.0%
ACAGACCTGGATGCCTTGTA+TGG + chr6_1:73053448-73053467 Msa0892570:intron 50.0%
! CAAGTCCATACAAGGCATCC+AGG - chr6_1:73053456-73053475 None:intergenic 50.0%
CTGGATGCCTTGTATGGACT+TGG + chr6_1:73053454-73053473 Msa0892570:intron 50.0%
TCATCTTCGGCATTCCTTCC+TGG + chr6_1:73053667-73053686 Msa0892570:CDS 50.0%
AATGCAACACTCAGCATGCC+AGG - chr6_1:73053688-73053707 None:intergenic 50.0%
! TAGACTTTAGGTGCCACACG+TGG - chr6_1:73055109-73055128 None:intergenic 50.0%
TGGTGGCATTTCCCACAGTT+GGG - chr6_1:73055354-73055373 None:intergenic 50.0%
ATGGTGGCATTTCCCACAGT+TGG - chr6_1:73055355-73055374 None:intergenic 50.0%
AGTTGGAGGGAATTGGCACC+GGG + chr6_1:73052225-73052244 Msa0892570:CDS 55.0%
! GAATTGGCACCGGGAAGATG+AGG + chr6_1:73052234-73052253 Msa0892570:CDS 55.0%
AGGAAAAAGGGTCACGAGCG+TGG + chr6_1:73052286-73052305 Msa0892570:CDS 55.0%
GGAAAAAGGGTCACGAGCGT+GGG + chr6_1:73052287-73052306 Msa0892570:CDS 55.0%
ACAGCAACGGCATTGCACAC+AGG - chr6_1:73053644-73053663 None:intergenic 55.0%
CAACACTCAGCATGCCAGGA+AGG - chr6_1:73053684-73053703 None:intergenic 55.0%
! ACTGGCTCAAGCTCAGGTGA+TGG + chr6_1:73055213-73055232 Msa0892570:CDS 55.0%
ACAGACAAGTGCCCCAACTG+TGG + chr6_1:73055339-73055358 Msa0892570:three_prime_UTR 55.0%
CAGACAAGTGCCCCAACTGT+GGG + chr6_1:73055340-73055359 Msa0892570:three_prime_UTR 55.0%
GGTGGCATTTCCCACAGTTG+GGG - chr6_1:73055353-73055372 None:intergenic 55.0%
TGCCACACGTGGATCGTAGC+CGG - chr6_1:73055098-73055117 None:intergenic 60.0%
CACACGTGGATCGTAGCCGG+CGG - chr6_1:73055095-73055114 None:intergenic 65.0%
! CGCCGGCTACGATCCACGTG+TGG + chr6_1:73055093-73055112 Msa0892570:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 73051004 73055472 73051004 ID=Msa0892570;Name=Msa0892570
chr6_1 mRNA 73051004 73055472 73051004 ID=Msa0892570-mRNA-1;Parent=Msa0892570;Name=Msa0892570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=268|0.25|0.6|0.6|1|1|5|175|622
chr6_1 exon 73051004 73052477 73051004 ID=Msa0892570-mRNA-1:exon:12465;Parent=Msa0892570-mRNA-1
chr6_1 exon 73052823 73052971 73052823 ID=Msa0892570-mRNA-1:exon:12466;Parent=Msa0892570-mRNA-1
chr6_1 exon 73053338 73053464 73053338 ID=Msa0892570-mRNA-1:exon:12467;Parent=Msa0892570-mRNA-1
chr6_1 exon 73053607 73053743 73053607 ID=Msa0892570-mRNA-1:exon:12468;Parent=Msa0892570-mRNA-1
chr6_1 exon 73055048 73055472 73055048 ID=Msa0892570-mRNA-1:exon:12469;Parent=Msa0892570-mRNA-1
chr6_1 five_prime_UTR 73051004 73051271 73051004 ID=Msa0892570-mRNA-1:five_prime_utr;Parent=Msa0892570-mRNA-1
chr6_1 CDS 73051272 73052477 73051272 ID=Msa0892570-mRNA-1:cds;Parent=Msa0892570-mRNA-1
chr6_1 CDS 73052823 73052971 73052823 ID=Msa0892570-mRNA-1:cds;Parent=Msa0892570-mRNA-1
chr6_1 CDS 73053338 73053464 73053338 ID=Msa0892570-mRNA-1:cds;Parent=Msa0892570-mRNA-1
chr6_1 CDS 73053607 73053743 73053607 ID=Msa0892570-mRNA-1:cds;Parent=Msa0892570-mRNA-1
chr6_1 CDS 73055048 73055297 73055048 ID=Msa0892570-mRNA-1:cds;Parent=Msa0892570-mRNA-1
chr6_1 three_prime_UTR 73055298 73055472 73055298 ID=Msa0892570-mRNA-1:three_prime_utr;Parent=Msa0892570-mRNA-1
Gene Sequence

>Msa0892570

ATGGCTTGGTATAGAAGAGGAAAGCTTGTTCTTGATGGTTTTCATAACTTGGCTTCTAGGGTTTCATCCCAAAATCCAATTTTTCAGCCTAGTAACAGAATTTTGCAATCTGGGTATTTGAATTTGGGTTCTAAAGATGCTAGCTTTAATGGGTTTTCTTCGTTTTCTTCAATTTTTCAACCTAGTTCGAGAATTTTGAAACCTGGGTATTTGAATTTGGGTAACAAAGGTGCTAACTTTAATGGGTTTTCTTCATTTTCTTCGATTTCTAATAGATTAGGAAAAATGGGTTTTGAAAATAATAAGAATATTAGAGTTGGTTGTCAAGGTGGTAACTTTAATGGGTTTTCTTCGTTTTCTTCAATTCCTAAGAGGTTAGGGAAAATGGGTTTTGAGATAAATAAGAATATTGGGGTGGGTTCCAAAGGTGTTAGCTTTAATGGGTTTTCGTCGGTTTCGAAGAATTTTAGGAGATTAGACAAAAGGGGTTTTGAAGTTAATAAGAATTTTAGGAGATTTTACTATGTTGATCCACAAAATGTGCAGCATTTTAAGCCAAGAGGGCCAAAGAATTGGTTTCAGAATCCTAGGCATGTTATGATTGGTGTAGTGGTAGGTTCTGGTGTTTTTATAACTGTGTATTTTGGGAATATGGAAACTGTTCCTTATACGAAGCGAACACATTTGATTTTGATGCCGAAAGAGATGGAGAAGAGTCTTGGGGAGAGCGAGTTTGAGAAGATGAAGGCGGGTTTTAAGGGGAAATTGTTACCTGCAATGCATCCTGAAAGTGTGAGAGTTAGGATGATAGCGAATGATATTATCGAAGCGTTGAAGAGAGGGTTGAGTAAGGAGAATGTGTGGAGTGATATAGATTATGCTTCAGAAAATTCTGTGTTTGGTGAAGAAAGTGGGAAGGAGACGATTAATGCATTGACTGAAAATGAAGGGAAAGTTGGAGGGAATTGGCACCGGGAAGATGAGGTTCTTGATGATAAATGGGTTCAGAAGAGTAGGAAAAAGGGTCACGAGCGTGGGTCGCAACCTTATACGTCGCATTTGGATGGATTGAATTGGGAGATTTTGGTGGTGAAGGATCCTATGGTTAATGCCTTTTGCTTACCTGGTGGGAAGATAGTCGTGTTTACGGGTTTGCTTGAACATTTTAGAAGTGATGCAGAGATAGCAACTATTATTGGACATGAGGTTGGACATGCTGTGGCCAGACACAGTGCTGAGAAGATGACAAAGAATATGTGGGTTTTAATTCTAAACATCGTACTTTATCAATTCGTCACACCTGATATTGTCAACACTATGTCATCGCTTTTGTTACAGCTACCTTTCTCCAGAAGTATGAGCATGGTTGTCAAACTCGTTAGTCAACTCGTAGATTCAGCCGAGTTTACACCTCTGACTATGACCTCCCAAAACGAGATAACTCAAGAGCAGAATTATTTTCTGCACAGACCTGGATGCCTTTATAATACAATTCTAATTGCAACTATTTCTTATTCCTGTGTGCAATGCCGTTGCTGTGTATCATCTTCGGCATTCCTTCCTGGCATGCTGAGTGTTGCATTGTGTTTCATCGCTTTTTTCTTGCGTTTGCGTGTCAGGATGGAAATTGAAGCTGATTACATTGGTCTTCTATTAGTTGCATCCGCCGGCTACGATCCACGTGTGGCACCTAAAGTCTACGAAAAGTTGGGAAAAATCTCCTGCGATTCTAAGCTTTTAGATTATTTCGCTACTCATCCATCTGGAAGAAAACGAGCAGAATTACTGGCTCAAGCTCAGGTGATGGATGAAGCTCTTACTATATATAAGACTGTAAGAGAAGGACATGGTGTTGAAGGATTTCTTTAG

Protein sequence

>Msa0892570

MAWYRRGKLVLDGFHNLASRVSSQNPIFQPSNRILQSGYLNLGSKDASFNGFSSFSSIFQPSSRILKPGYLNLGNKGANFNGFSSFSSISNRLGKMGFENNKNIRVGCQGGNFNGFSSFSSIPKRLGKMGFEINKNIGVGSKGVSFNGFSSVSKNFRRLDKRGFEVNKNFRRFYYVDPQNVQHFKPRGPKNWFQNPRHVMIGVVVGSGVFITVYFGNMETVPYTKRTHLILMPKEMEKSLGESEFEKMKAGFKGKLLPAMHPESVRVRMIANDIIEALKRGLSKENVWSDIDYASENSVFGEESGKETINALTENEGKVGGNWHREDEVLDDKWVQKSRKKGHERGSQPYTSHLDGLNWEILVVKDPMVNAFCLPGGKIVVFTGLLEHFRSDAEIATIIGHEVGHAVARHSAEKMTKNMWVLILNIVLYQFVTPDIVNTMSSLLLQLPFSRSMSMVVKLVSQLVDSAEFTPLTMTSQNEITQEQNYFLHRPGCLYNTILIATISYSCVQCRCCVSSSAFLPGMLSVALCFIAFFLRLRVRMEIEADYIGLLLVASAGYDPRVAPKVYEKLGKISCDSKLLDYFATHPSGRKRAELLAQAQVMDEALTIYKTVREGHGVEGFL*