AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0636020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0636020 MtrunA17_Chr4g0021001 98.547 344 5 0 1 344 1 344 0.0 693
Msa0636020 MtrunA17_Chr7g0249531 39.130 115 56 4 1 111 1 105 2.12e-15 76.6
Msa0636020 MtrunA17_Chr7g0249531 27.941 136 92 2 135 265 209 343 2.65e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0636020 AT5G51410.2 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0636020 AT5G51410.1 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0636020 AT5G51410.4 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0636020 AT5G51410.3 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0636020 AT5G51410.5 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0636020 AT3G03340.1 30.526 190 115 5 1 186 1 177 7.93e-17 81.3
Msa0636020 AT3G03340.1 35.220 159 78 7 116 263 198 342 1.50e-14 74.7
Msa0636020 AT3G03340.2 30.526 190 115 5 1 186 79 255 1.80e-16 80.5
Msa0636020 AT3G03340.2 35.220 159 78 7 116 263 276 420 2.64e-14 73.9
Msa0636020 AT5G17440.1 30.159 189 115 5 1 185 1 176 3.48e-16 79.3
Msa0636020 AT5G17440.1 33.846 130 71 3 117 241 199 318 2.87e-13 70.9
Msa0636020 AT5G17440.2 35.345 116 65 3 1 114 1 108 6.28e-16 77.4
Msa0636020 AT3G03340.3 30.526 190 115 5 1 186 1 177 7.42e-16 77.8
Msa0636020 AT3G03340.3 35.537 121 61 4 116 230 198 307 7.07e-13 68.9

Find 147 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCATCAATATTATTAA+TGG 0.112591 4_3:+25752276 Msa0636020:three_prime_UTR
CTTCTGTAGTTATGCTTAAT+AGG 0.142913 4_3:-25752062 None:intergenic
TAAGCAATAGTGGTAGTTTA+AGG 0.186323 4_3:-25753556 None:intergenic
TTGTAACTTCTCTCATAAAT+TGG 0.249696 4_3:+25752328 Msa0636020:three_prime_UTR
CTGTTAAAGAGTGTTAAATT+TGG 0.258347 4_3:+25753090 Msa0636020:three_prime_UTR
GCAAGATCGGCTTCAAATTT+AGG 0.292888 4_3:-25750955 None:intergenic
GAGTGTTAAATTTGGTGTTC+AGG 0.317319 4_3:+25753098 Msa0636020:three_prime_UTR
ACTGTCATTGAACTGGGCTT+TGG 0.322946 4_3:+25753002 Msa0636020:three_prime_UTR
CTGTCATTGAACTGGGCTTT+GGG 0.325212 4_3:+25753003 Msa0636020:three_prime_UTR
TCTTCTCTTGTTTGAGCTGT+TGG 0.326625 4_3:+25753445 Msa0636020:three_prime_UTR
TTCTGTAGTTATGCTTAATA+GGG 0.331026 4_3:-25752061 None:intergenic
TTTAATTGCTAGATAGCTTC+TGG 0.331096 4_3:+25753149 Msa0636020:three_prime_UTR
GGAAGTTTGTGGTTTCTATA+TGG 0.332001 4_3:+25749102 Msa0636020:CDS
CTCCGAAATGAAATACTATA+AGG 0.335764 4_3:+25753475 Msa0636020:three_prime_UTR
TGTTTGAATTGAACATTCAT+AGG 0.337016 4_3:+25752910 Msa0636020:three_prime_UTR
GACTGGAAAATACAGGTATT+TGG 0.338145 4_3:+25752932 Msa0636020:three_prime_UTR
TTCCTTATAGTATTTCATTT+CGG 0.342310 4_3:-25753477 None:intergenic
GGAGAAAATAAAGAACCTTC+TGG 0.354149 4_3:+25751211 Msa0636020:CDS
TCAAAACGTTTGATAAATCT+TGG 0.369243 4_3:+25753285 Msa0636020:three_prime_UTR
GTTGAATCTCTTGGTGAAGC+TGG 0.375956 4_3:+25751239 Msa0636020:CDS
TATTACCTTGAGGGAAAGAT+TGG 0.378519 4_3:+25752535 Msa0636020:three_prime_UTR
GACGGAGTGATTCAAGTGAT+AGG 0.379473 4_3:+25751850 Msa0636020:CDS
GAGTATGAGTACCATGGATT+CGG 0.383739 4_3:-25752747 None:intergenic
GCACGTATGCATCATGCCTT+GGG 0.388877 4_3:-25750933 None:intergenic
ATTGTGCGATTGGAGGTAAT+TGG 0.394665 4_3:+25753058 Msa0636020:three_prime_UTR
AAGCAATAGTGGTAGTTTAA+GGG 0.397561 4_3:-25753555 None:intergenic
TTCTTGCGGTGCTGTGTTGT+GGG 0.398348 4_3:-25748813 None:intergenic
GGTAAATAACCGCGTCGTGA+TGG 0.398405 4_3:+25753186 Msa0636020:three_prime_UTR
ATCTTACTGAATTTGTTGTT+AGG 0.399949 4_3:+25752718 Msa0636020:three_prime_UTR
CAATATTATTAATGGAGAAA+AGG 0.410537 4_3:+25752284 Msa0636020:three_prime_UTR
CTCGACGAACTCATGGGTTC+AGG 0.418323 4_3:+25748944 Msa0636020:CDS
ATCTGAACAGTTGTCTGTCC+TGG 0.430404 4_3:+25751187 Msa0636020:CDS
GTGATTGTCATTGCCGCAAA+AGG 0.430567 4_3:+25752474 Msa0636020:three_prime_UTR
ATTTCTGATACAAATTAACT+TGG 0.432186 4_3:-25752962 None:intergenic
AGTTATGTTACATTCTCAAC+TGG 0.432864 4_3:+25753259 Msa0636020:three_prime_UTR
CTGGAACAAGTTGAATCTCT+TGG 0.435647 4_3:+25751230 Msa0636020:CDS
TGGGACGATAAGGAAGTTTG+TGG 0.435949 4_3:+25749091 Msa0636020:CDS
GGCACGTATGCATCATGCCT+TGG 0.438040 4_3:-25750934 None:intergenic
TGTGAATCTTATTACCTTGA+GGG 0.445694 4_3:+25752526 Msa0636020:three_prime_UTR
AGCTCTCCTCGACGAACTCA+TGG 0.445844 4_3:+25748937 Msa0636020:CDS
AGTATGAGTACCATGGATTC+GGG 0.446576 4_3:-25752746 None:intergenic
ATTCCGTACGAGTTACCAAT+TGG 0.447374 4_3:-25752835 None:intergenic
ATTACCTATATCTTCTAAAC+CGG 0.448487 4_3:-25752697 None:intergenic
TTGAATTGTGTTGTTAGCTA+TGG 0.449439 4_3:+25748904 Msa0636020:exon
CAGCATTTATAAACCTGTGC+TGG 0.451398 4_3:-25752630 None:intergenic
CTCACAAAACTGAGCAAGAT+CGG 0.453847 4_3:-25750968 None:intergenic
GGTAATCGAGATCGAGGAAG+GGG 0.456957 4_3:+25751966 Msa0636020:CDS
AATATTATTAATGGAGAAAA+GGG 0.457945 4_3:+25752285 Msa0636020:three_prime_UTR
AATGAAATCACGCAAGATAA+GGG 0.459719 4_3:-25753400 None:intergenic
GTAAATAACCGCGTCGTGAT+GGG 0.462868 4_3:+25753187 Msa0636020:three_prime_UTR
AAATGAAATCACGCAAGATA+AGG 0.465458 4_3:-25753401 None:intergenic
TCAGAATTTAAATTCAAAAG+AGG 0.469798 4_3:+25752132 Msa0636020:three_prime_UTR
CAAACAAGTTATTGTGCGAT+TGG 0.474312 4_3:+25753048 Msa0636020:three_prime_UTR
CATTAATAATATTGATGAAA+GGG 0.479290 4_3:-25752275 None:intergenic
TTTCTTGCGGTGCTGTGTTG+TGG 0.480632 4_3:-25748814 None:intergenic
TATCGAGAAATTCCACTACT+TGG 0.481237 4_3:-25752105 None:intergenic
AGAAGTGAGTTGGGACGATA+AGG 0.483654 4_3:+25749081 Msa0636020:CDS
ACTCGGATCGTGAAAGATCT+CGG 0.487797 4_3:+25751928 Msa0636020:CDS
GCAGAGACAGGTACCACAAT+CGG 0.490454 4_3:+25752024 Msa0636020:CDS
ATAATCACAGGTGATGGACT+TGG 0.491646 4_3:+25751085 Msa0636020:intron
TGTCCAATTGGTAACTCGTA+CGG 0.493034 4_3:+25752832 Msa0636020:three_prime_UTR
TCACTCCGTCTCTTTCTCTC+AGG 0.493705 4_3:-25751837 None:intergenic
TGATTGTCATTGCCGCAAAA+GGG 0.496260 4_3:+25752475 Msa0636020:three_prime_UTR
AGAAGAGCGAAGAAAACAAA+AGG 0.502735 4_3:+25751806 Msa0636020:CDS
GCTGTCAGTGGTGGCGGTGG+TGG 0.503620 4_3:-25751158 None:intergenic
GTCAACACGCGCAGTGATCT+CGG 0.505201 4_3:+25749151 Msa0636020:CDS
TAGTGGTCATATGCATACTT+TGG 0.505395 4_3:+25753308 Msa0636020:three_prime_UTR
GCGAAGAAAACAAAAGGAGC+AGG 0.514193 4_3:+25751812 Msa0636020:CDS
CTCGGATCGTGAAAGATCTC+GGG 0.514400 4_3:+25751929 Msa0636020:CDS
ATCGAGATAGGCAGCGTGAT+AGG 0.514417 4_3:+25751892 Msa0636020:CDS
ATCTCTTGGTGAAGCTGGGA+AGG 0.515528 4_3:+25751244 Msa0636020:CDS
ACGGAGTGATTCAAGTGATA+GGG 0.516868 4_3:+25751851 Msa0636020:CDS
GTCATTGCCGCAAAAGGGGA+TGG 0.516933 4_3:+25752480 Msa0636020:three_prime_UTR
GGGTTACAAAGAAGTGAGTT+GGG 0.517957 4_3:+25749072 Msa0636020:CDS
GATACAAATTAACTTGGCAA+AGG 0.519130 4_3:-25752956 None:intergenic
TTGAATCTCTTGGTGAAGCT+GGG 0.520092 4_3:+25751240 Msa0636020:CDS
ATACAAATTAACTTGGCAAA+GGG 0.523536 4_3:-25752955 None:intergenic
GGAAAGCAGCATGTTGGCTA+TGG 0.524490 4_3:+25751613 Msa0636020:CDS
GAATTGAACATTCATAGGAC+TGG 0.525227 4_3:+25752915 Msa0636020:three_prime_UTR
GGGGTTACAAAGAAGTGAGT+TGG 0.527552 4_3:+25749071 Msa0636020:CDS
CTTATAGTATTTCATTTCGG+AGG 0.528339 4_3:-25753474 None:intergenic
TAAATACAGATAGAGCGAAA+GGG 0.528911 4_3:+25748759 Msa0636020:five_prime_UTR
GAGGTAATCGAGATCGAGGA+AGG 0.532185 4_3:+25751964 Msa0636020:CDS
GAGATTCAACTTGTTCCAGA+AGG 0.534767 4_3:-25751226 None:intergenic
AAGTTGATATAAACCAGCAC+AGG 0.535092 4_3:+25752617 Msa0636020:three_prime_UTR
TTCATAGGACTGGAAAATAC+AGG 0.535322 4_3:+25752925 Msa0636020:three_prime_UTR
ATAAATACAGATAGAGCGAA+AGG 0.540993 4_3:+25748758 Msa0636020:five_prime_UTR
TTAGGCATTTCCCGAATCCA+TGG 0.541017 4_3:+25752736 Msa0636020:three_prime_UTR
ACAAGTTATTGTGCGATTGG+AGG 0.541084 4_3:+25753051 Msa0636020:three_prime_UTR
AGCTGAAGCTCTTATGAGAA+AGG 0.541211 4_3:+25751274 Msa0636020:CDS
CTTCTGGACATGATATGTGC+AGG 0.542392 4_3:+25753165 Msa0636020:three_prime_UTR
CTTGACTGAGGAAGAAAGAA+GGG 0.550258 4_3:+25749051 Msa0636020:CDS
CCATTAATAATATTGATGAA+AGG 0.552598 4_3:-25752276 None:intergenic
ACTTGACTGAGGAAGAAAGA+AGG 0.553452 4_3:+25749050 Msa0636020:CDS
GATTGCTAAGGAGAAGGCTA+AGG 0.554953 4_3:+25751752 Msa0636020:intron
CGTTTGATAAATCTTGGTAG+TGG 0.556650 4_3:+25753291 Msa0636020:three_prime_UTR
TCAGCTGTCAGTGGTGGCGG+TGG 0.557872 4_3:-25751161 None:intergenic
GGAAGAAGAAAGATTGACTC+GGG 0.558620 4_3:+25751773 Msa0636020:CDS
AGAACTCAGTCTCATGTCGC+AGG 0.559633 4_3:+25751592 Msa0636020:CDS
GAAAGATCTCGGGAATATGA+AGG 0.563627 4_3:+25751939 Msa0636020:CDS
GACATTGAACTACAATCTGA+AGG 0.563713 4_3:+25752672 Msa0636020:three_prime_UTR
ATGTGAATCTTATTACCTTG+AGG 0.567214 4_3:+25752525 Msa0636020:three_prime_UTR
GCAGCATGTTGGCTATGGTA+TGG 0.570060 4_3:+25751618 Msa0636020:CDS
TCTCGGGAATATGAAGGTAG+AGG 0.580782 4_3:+25751945 Msa0636020:CDS
AAATACAGATAGAGCGAAAG+GGG 0.581320 4_3:+25748760 Msa0636020:five_prime_UTR
TTATAGTATTTCATTTCGGA+GGG 0.584383 4_3:-25753473 None:intergenic
ATTAATGGAGAAAAGGGTCG+AGG 0.584758 4_3:+25752291 Msa0636020:three_prime_UTR
CTATTAAGCATAACTACAGA+AGG 0.587485 4_3:+25752063 Msa0636020:CDS
GTTGTGTTTGCTCCAAGTAG+TGG 0.588205 4_3:+25752093 Msa0636020:three_prime_UTR
AAATACCAATCTTTCCCTCA+AGG 0.593035 4_3:-25752540 None:intergenic
GCTCTCCTCGACGAACTCAT+GGG 0.594522 4_3:+25748938 Msa0636020:CDS
GAACTACAATCTGAAGGCAC+CGG 0.594986 4_3:+25752678 Msa0636020:three_prime_UTR
AATTGGTAACTCGTACGGAA+TGG 0.596682 4_3:+25752837 Msa0636020:three_prime_UTR
GATTGTCATTGCCGCAAAAG+GGG 0.597028 4_3:+25752476 Msa0636020:three_prime_UTR
AACGTGATCTGCTCCGATTG+TGG 0.597216 4_3:-25752037 None:intergenic
TGACTTCATAAATGAATACA+AGG 0.598021 4_3:+25751645 Msa0636020:CDS
AGGAAGAAGAAAGATTGACT+CGG 0.603218 4_3:+25751772 Msa0636020:CDS
GGTAGAGGTAATCGAGATCG+AGG 0.605352 4_3:+25751960 Msa0636020:CDS
GTCGCAGGAAAGCAGCATGT+TGG 0.607800 4_3:+25751607 Msa0636020:CDS
GGCACCGGTTTAGAAGATAT+AGG 0.609877 4_3:+25752693 Msa0636020:three_prime_UTR
AGGTAATCGAGATCGAGGAA+GGG 0.610688 4_3:+25751965 Msa0636020:CDS
AATGCTTCAGGAGAAGAAGA+TGG 0.611727 4_3:+25751519 Msa0636020:CDS
ATCGTGATAAAGATCGAGAT+AGG 0.617765 4_3:+25751880 Msa0636020:CDS
TCTGTAGTTATGCTTAATAG+GGG 0.619225 4_3:-25752060 None:intergenic
GGTATGTGGTTCGTTTCTCG+TGG 0.623915 4_3:+25751552 Msa0636020:CDS
ATGGCACTCTGTGAGGTATG+TGG 0.625178 4_3:+25751538 Msa0636020:CDS
ATGGAGAAAAGGGTCGAGGT+AGG 0.633613 4_3:+25752295 Msa0636020:three_prime_UTR
GGAGACACTTAATACTGAGA+AGG 0.634366 4_3:+25751462 Msa0636020:CDS
TGAACAGTTGTCTGTCCTGG+AGG 0.636803 4_3:+25751190 Msa0636020:CDS
AGGATCCTGAGAGAAAGAGA+CGG 0.640354 4_3:+25751832 Msa0636020:CDS
AATTATGAGTATGAGTACCA+TGG 0.643720 4_3:-25752753 None:intergenic
GTGTTGACGAAGAGATCGTG+AGG 0.645071 4_3:-25749136 None:intergenic
TTGTTTCTCCCATCACGACG+CGG 0.647983 4_3:-25753195 None:intergenic
ACGAGAACGTCTTAATCAAG+AGG 0.649224 4_3:+25751127 Msa0636020:CDS
ATGGTTTCTAGGTTGAGGAA+CGG 0.651338 4_3:+25751990 Msa0636020:CDS
GAAGAAGATGGCACTCTGTG+AGG 0.661944 4_3:+25751531 Msa0636020:CDS
AGAACGTCTTAATCAAGAGG+TGG 0.666877 4_3:+25751130 Msa0636020:CDS
TTTGTATCTAGGGTTTCTTG+CGG 0.666965 4_3:-25748827 None:intergenic
TTCAGCTCGAAACTTGACTG+AGG 0.672653 4_3:+25749039 Msa0636020:intron
TTGACTGAGGAAGAAAGAAG+GGG 0.676867 4_3:+25749052 Msa0636020:CDS
CACGTATGCATCATGCCTTG+GGG 0.690040 4_3:-25750932 None:intergenic
GTAATCGAGATCGAGGAAGG+GGG 0.692537 4_3:+25751967 Msa0636020:CDS
TAGGTACAGAGATAGAGACT+CGG 0.703615 4_3:+25751911 Msa0636020:CDS
AATACAGATAGAGCGAAAGG+GGG 0.716335 4_3:+25748761 Msa0636020:five_prime_UTR
TGTTGACGAAGAGATCGTGA+GGG 0.727468 4_3:-25749135 None:intergenic
CTGAACCCATGAGTTCGTCG+AGG 0.733418 4_3:-25748943 None:intergenic
TTGGATAGAAGAGTAAAACG+TGG 0.775215 4_3:+25751104 Msa0636020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTATATTAAATATA+TGG + chr4_3:25749936-25749955 Msa0636020:intron 0.0%
!! AATTATTTATAAGTATGTTA+AGG + chr4_3:25749351-25749370 Msa0636020:intron 10.0%
!! ATAAATGTATAGATTAATTT+AGG - chr4_3:25751681-25751700 None:intergenic 10.0%
!!! AATTTAGAATTTTGTATCTA+GGG - chr4_3:25748840-25748859 None:intergenic 15.0%
!!! TAATTTAGAATTTTGTATCT+AGG - chr4_3:25748841-25748860 None:intergenic 15.0%
!! GTTCAAAAAATTATTAATCT+TGG + chr4_3:25749991-25750010 Msa0636020:intron 15.0%
!! AAGGTTAACAAAAAAAATTA+GGG - chr4_3:25750521-25750540 None:intergenic 15.0%
!! AAAGGTTAACAAAAAAAATT+AGG - chr4_3:25750522-25750541 None:intergenic 15.0%
!! TTGACATTCAAATTTAATAT+GGG - chr4_3:25750558-25750577 None:intergenic 15.0%
!! ATTGACATTCAAATTTAATA+TGG - chr4_3:25750559-25750578 None:intergenic 15.0%
!!! CTTATATAAATATGTGTTTT+TGG + chr4_3:25752175-25752194 Msa0636020:intron 15.0%
!! CATTAATAATATTGATGAAA+GGG - chr4_3:25752278-25752297 None:intergenic 15.0%
!! AATATTATTAATGGAGAAAA+GGG + chr4_3:25752285-25752304 Msa0636020:three_prime_UTR 15.0%
!!! ATTAAATAGTTTGAGATTTC+TGG + chr4_3:25750314-25750333 Msa0636020:intron 20.0%
!! AAAAAATTAGGGTATACTTA+CGG - chr4_3:25750510-25750529 None:intergenic 20.0%
!!! AAGGATAAGAAACTTTTAAA+GGG - chr4_3:25750656-25750675 None:intergenic 20.0%
!!! AAAGGATAAGAAACTTTTAA+AGG - chr4_3:25750657-25750676 None:intergenic 20.0%
!!! GCATTTTATGCTTTATTTAT+CGG - chr4_3:25750821-25750840 None:intergenic 20.0%
!! GAAATCAAAAAACAATTTAC+TGG - chr4_3:25750843-25750862 None:intergenic 20.0%
!!! ATTAACACTTTTTCATTTTG+AGG - chr4_3:25751502-25751521 None:intergenic 20.0%
!! AATGAAATCATTCTTGAAAT+TGG + chr4_3:25751703-25751722 Msa0636020:intron 20.0%
!! TCAGAATTTAAATTCAAAAG+AGG + chr4_3:25752132-25752151 Msa0636020:three_prime_UTR 20.0%
!! CACATATTTATATAAGTCTT+GGG - chr4_3:25752171-25752190 None:intergenic 20.0%
!! ACACATATTTATATAAGTCT+TGG - chr4_3:25752172-25752191 None:intergenic 20.0%
!! CCATTAATAATATTGATGAA+AGG - chr4_3:25752279-25752298 None:intergenic 20.0%
!! CCTTTCATCAATATTATTAA+TGG + chr4_3:25752276-25752295 Msa0636020:three_prime_UTR 20.0%
!! CAATATTATTAATGGAGAAA+AGG + chr4_3:25752284-25752303 Msa0636020:three_prime_UTR 20.0%
!! AGTAATGAAACATACAAAAA+AGG - chr4_3:25752587-25752606 None:intergenic 20.0%
!!! ACTCATACTCATAATTTTAT+TGG + chr4_3:25752760-25752779 Msa0636020:three_prime_UTR 20.0%
!!! CTCATACTCATAATTTTATT+GGG + chr4_3:25752761-25752780 Msa0636020:three_prime_UTR 20.0%
!!! TCATACTCATAATTTTATTG+GGG + chr4_3:25752762-25752781 Msa0636020:three_prime_UTR 20.0%
!!! TTTTTTTTTTTTTACGGATG+AGG - chr4_3:25752870-25752889 None:intergenic 20.0%
!! ATTTCTGATACAAATTAACT+TGG - chr4_3:25752965-25752984 None:intergenic 20.0%
!! TTCCTTATAGTATTTCATTT+CGG - chr4_3:25753480-25753499 None:intergenic 20.0%
! AAATGTTACAAATGAGAATG+AGG + chr4_3:25749250-25749269 Msa0636020:intron 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr4_3:25749452-25749471 None:intergenic 25.0%
!!! TGCAATGTTTTTGAAAATCA+CGG - chr4_3:25749691-25749710 None:intergenic 25.0%
!!! TTTGACTTTTTGTTCGTATT+TGG + chr4_3:25749866-25749885 Msa0636020:intron 25.0%
!!! TTTTTGTTCGTATTTGGAAT+AGG + chr4_3:25749872-25749891 Msa0636020:intron 25.0%
!! TAAGATATTTAGAGTTGAAG+AGG - chr4_3:25750151-25750170 None:intergenic 25.0%
!!! AATTTCATGACTTGTTCAAT+TGG + chr4_3:25750576-25750595 Msa0636020:intron 25.0%
!!! ATTTCATGACTTGTTCAATT+GGG + chr4_3:25750577-25750596 Msa0636020:intron 25.0%
! TGACAAAGTAAAATATGCAA+AGG - chr4_3:25750675-25750694 None:intergenic 25.0%
!! ATATTTTACTTTGTCATGCA+TGG + chr4_3:25750679-25750698 Msa0636020:intron 25.0%
!! TTTTTAATGTAGAATGAGGA+TGG - chr4_3:25751019-25751038 None:intergenic 25.0%
!!! ACTGTTTTTAATGTAGAATG+AGG - chr4_3:25751023-25751042 None:intergenic 25.0%
! AATAGTATACACAAGGAAAA+GGG - chr4_3:25751319-25751338 None:intergenic 25.0%
! AATCATCAATAGTATACACA+AGG - chr4_3:25751326-25751345 None:intergenic 25.0%
!!! CTCGTGAATTTATTTTTTTG+CGG + chr4_3:25751421-25751440 Msa0636020:intron 25.0%
!!! TCGTGAATTTATTTTTTTGC+GGG + chr4_3:25751422-25751441 Msa0636020:intron 25.0%
! TGACTTCATAAATGAATACA+AGG + chr4_3:25751645-25751664 Msa0636020:CDS 25.0%
! TTCTGTAGTTATGCTTAATA+GGG - chr4_3:25752064-25752083 None:intergenic 25.0%
! ATATAAGTCTTGGGATATTA+AGG - chr4_3:25752162-25752181 None:intergenic 25.0%
!! TTAAGTTTTCTCATCATCAA+AGG + chr4_3:25752202-25752221 Msa0636020:intron 25.0%
!! TAAGTTTTCTCATCATCAAA+GGG + chr4_3:25752203-25752222 Msa0636020:intron 25.0%
! TTGTAACTTCTCTCATAAAT+TGG + chr4_3:25752328-25752347 Msa0636020:three_prime_UTR 25.0%
! ATTACCTATATCTTCTAAAC+CGG - chr4_3:25752700-25752719 None:intergenic 25.0%
!!! ATCTTACTGAATTTGTTGTT+AGG + chr4_3:25752718-25752737 Msa0636020:three_prime_UTR 25.0%
! TGTTTGAATTGAACATTCAT+AGG + chr4_3:25752910-25752929 Msa0636020:three_prime_UTR 25.0%
!! ATACAAATTAACTTGGCAAA+GGG - chr4_3:25752958-25752977 None:intergenic 25.0%
!!! CTGTTAAAGAGTGTTAAATT+TGG + chr4_3:25753090-25753109 Msa0636020:three_prime_UTR 25.0%
! TCAAAACGTTTGATAAATCT+TGG + chr4_3:25753285-25753304 Msa0636020:three_prime_UTR 25.0%
! TTATAGTATTTCATTTCGGA+GGG - chr4_3:25753476-25753495 None:intergenic 25.0%
ATAAATACAGATAGAGCGAA+AGG + chr4_3:25748758-25748777 Msa0636020:five_prime_UTR 30.0%
TAAATACAGATAGAGCGAAA+GGG + chr4_3:25748759-25748778 Msa0636020:five_prime_UTR 30.0%
! TTGAATTGTGTTGTTAGCTA+TGG + chr4_3:25748904-25748923 Msa0636020:exon 30.0%
CTAAAATAAGCCAATCCAAA+CGG - chr4_3:25749289-25749308 None:intergenic 30.0%
AACTTATGAACTATGAAGCA+TGG + chr4_3:25749391-25749410 Msa0636020:intron 30.0%
TATTCATAAGCTATGAAGCA+CGG - chr4_3:25749560-25749579 None:intergenic 30.0%
TTCATAAGCTCAATCTAAAC+AGG + chr4_3:25749644-25749663 Msa0636020:intron 30.0%
!! GCAATGTTTTTGAAAATCAC+GGG - chr4_3:25749690-25749709 None:intergenic 30.0%
TGAATTGACACAAAATTCCA+TGG - chr4_3:25749734-25749753 None:intergenic 30.0%
ACGAACAAAAAGTCAAAGAT+TGG - chr4_3:25749863-25749882 None:intergenic 30.0%
TAATACAGTAATTGACACCT+AGG - chr4_3:25750076-25750095 None:intergenic 30.0%
AAGTTCATTCTGTTTCATGT+AGG - chr4_3:25750107-25750126 None:intergenic 30.0%
CTTATTAACTGTGATAGCTT+TGG + chr4_3:25750167-25750186 Msa0636020:intron 30.0%
!! CTTACTTTTCTTTCAACTTC+GGG - chr4_3:25750259-25750278 None:intergenic 30.0%
!! GCTTACTTTTCTTTCAACTT+CGG - chr4_3:25750260-25750279 None:intergenic 30.0%
!! TTAGTTTTCAGACAGTAATC+AGG - chr4_3:25750382-25750401 None:intergenic 30.0%
!! TTTCATGACTTGTTCAATTG+GGG + chr4_3:25750578-25750597 Msa0636020:intron 30.0%
!! CTTTTAAAGGGAAGCAATAT+TGG - chr4_3:25750644-25750663 None:intergenic 30.0%
AACATATGCCTCTGATAATT+TGG + chr4_3:25750710-25750729 Msa0636020:intron 30.0%
! CTTTATTTATCGGCATATCA+TGG - chr4_3:25750811-25750830 None:intergenic 30.0%
AAACTCAGTTACACATTTAC+GGG - chr4_3:25750865-25750884 None:intergenic 30.0%
GAAACTCAGTTACACATTTA+CGG - chr4_3:25750866-25750885 None:intergenic 30.0%
!! TGTTTTCTGGTAATAATCAC+AGG + chr4_3:25751073-25751092 Msa0636020:intron 30.0%
CAATAGTATACACAAGGAAA+AGG - chr4_3:25751320-25751339 None:intergenic 30.0%
ACAAGTTCATTTCTACGATT+GGG - chr4_3:25751366-25751385 None:intergenic 30.0%
!!! CGTGAATTTATTTTTTTGCG+GGG + chr4_3:25751423-25751442 Msa0636020:intron 30.0%
!! TGAAAAAGTGTTAATGCTTC+AGG + chr4_3:25751507-25751526 Msa0636020:CDS 30.0%
! ATCTTCTTTTCAGATTGCTA+AGG + chr4_3:25751740-25751759 Msa0636020:intron 30.0%
TCTGTAGTTATGCTTAATAG+GGG - chr4_3:25752063-25752082 None:intergenic 30.0%
CTTCTGTAGTTATGCTTAAT+AGG - chr4_3:25752065-25752084 None:intergenic 30.0%
CTATTAAGCATAACTACAGA+AGG + chr4_3:25752063-25752082 Msa0636020:CDS 30.0%
! CTTTCTTTACATGCATTTTC+TGG + chr4_3:25752407-25752426 Msa0636020:three_prime_UTR 30.0%
ATGTGAATCTTATTACCTTG+AGG + chr4_3:25752525-25752544 Msa0636020:three_prime_UTR 30.0%
TGTGAATCTTATTACCTTGA+GGG + chr4_3:25752526-25752545 Msa0636020:three_prime_UTR 30.0%
AATTATGAGTATGAGTACCA+TGG - chr4_3:25752756-25752775 None:intergenic 30.0%
! AGTAAAACTGCTAAGTTTTG+AGG - chr4_3:25752810-25752829 None:intergenic 30.0%
!! CAGTTTTACTTTTGTCCAAT+TGG + chr4_3:25752820-25752839 Msa0636020:three_prime_UTR 30.0%
! GATACAAATTAACTTGGCAA+AGG - chr4_3:25752959-25752978 None:intergenic 30.0%
ATGAAAAACTGTCATTGAAC+TGG + chr4_3:25752995-25753014 Msa0636020:three_prime_UTR 30.0%
TGAAAAACTGTCATTGAACT+GGG + chr4_3:25752996-25753015 Msa0636020:three_prime_UTR 30.0%
TTTAATTGCTAGATAGCTTC+TGG + chr4_3:25753149-25753168 Msa0636020:three_prime_UTR 30.0%
AGTTATGTTACATTCTCAAC+TGG + chr4_3:25753259-25753278 Msa0636020:three_prime_UTR 30.0%
AATGAAATCACGCAAGATAA+GGG - chr4_3:25753403-25753422 None:intergenic 30.0%
AAATGAAATCACGCAAGATA+AGG - chr4_3:25753404-25753423 None:intergenic 30.0%
CTTATAGTATTTCATTTCGG+AGG - chr4_3:25753477-25753496 None:intergenic 30.0%
CTCCGAAATGAAATACTATA+AGG + chr4_3:25753475-25753494 Msa0636020:three_prime_UTR 30.0%
AAATACAGATAGAGCGAAAG+GGG + chr4_3:25748760-25748779 Msa0636020:five_prime_UTR 35.0%
! TTTGTATCTAGGGTTTCTTG+CGG - chr4_3:25748830-25748849 None:intergenic 35.0%
GGAAGTTTGTGGTTTCTATA+TGG + chr4_3:25749102-25749121 Msa0636020:CDS 35.0%
GTTACAAATGAGAATGAGGA+AGG + chr4_3:25749254-25749273 Msa0636020:intron 35.0%
!! TTAACTGTGATAGCTTTGGT+TGG + chr4_3:25750171-25750190 Msa0636020:intron 35.0%
! AACTTCGGGTCATGTATTTT+CGG - chr4_3:25750245-25750264 None:intergenic 35.0%
AAAGGGAAGCAATATTGGTA+CGG - chr4_3:25750639-25750658 None:intergenic 35.0%
TACGCATACCAAATTATCAG+AGG - chr4_3:25750721-25750740 None:intergenic 35.0%
!! TGCTCAGTTTTGTGAGAAAT+TGG + chr4_3:25750975-25750994 Msa0636020:CDS 35.0%
!! CAGTTTTGTGAGAAATTGGT+AGG + chr4_3:25750979-25750998 Msa0636020:intron 35.0%
! CTGATGTTCTTCATGTTTTC+TGG + chr4_3:25751060-25751079 Msa0636020:intron 35.0%
TTGGATAGAAGAGTAAAACG+TGG + chr4_3:25751104-25751123 Msa0636020:CDS 35.0%
GGAGAAAATAAAGAACCTTC+TGG + chr4_3:25751211-25751230 Msa0636020:CDS 35.0%
CAAGTTCATTTCTACGATTG+GGG - chr4_3:25751365-25751384 None:intergenic 35.0%
CACAAGTTCATTTCTACGAT+TGG - chr4_3:25751367-25751386 None:intergenic 35.0%
! TTTTCAGATTGCTAAGGAGA+AGG + chr4_3:25751746-25751765 Msa0636020:intron 35.0%
AGGAAGAAGAAAGATTGACT+CGG + chr4_3:25751772-25751791 Msa0636020:CDS 35.0%
AGAAGAGCGAAGAAAACAAA+AGG + chr4_3:25751806-25751825 Msa0636020:CDS 35.0%
ATCGTGATAAAGATCGAGAT+AGG + chr4_3:25751880-25751899 Msa0636020:CDS 35.0%
TATCGAGAAATTCCACTACT+TGG - chr4_3:25752108-25752127 None:intergenic 35.0%
!!! GATGGTTTACTCTTGTTTTG+AGG + chr4_3:25752498-25752517 Msa0636020:three_prime_UTR 35.0%
TATTACCTTGAGGGAAAGAT+TGG + chr4_3:25752535-25752554 Msa0636020:three_prime_UTR 35.0%
AAATACCAATCTTTCCCTCA+AGG - chr4_3:25752543-25752562 None:intergenic 35.0%
!! AAGTTGATATAAACCAGCAC+AGG + chr4_3:25752617-25752636 Msa0636020:three_prime_UTR 35.0%
GACATTGAACTACAATCTGA+AGG + chr4_3:25752672-25752691 Msa0636020:three_prime_UTR 35.0%
!!! AAAACTGCTAAGTTTTGAGG+TGG - chr4_3:25752807-25752826 None:intergenic 35.0%
GAATTGAACATTCATAGGAC+TGG + chr4_3:25752915-25752934 Msa0636020:three_prime_UTR 35.0%
TTCATAGGACTGGAAAATAC+AGG + chr4_3:25752925-25752944 Msa0636020:three_prime_UTR 35.0%
GACTGGAAAATACAGGTATT+TGG + chr4_3:25752932-25752951 Msa0636020:three_prime_UTR 35.0%
CAAACAAGTTATTGTGCGAT+TGG + chr4_3:25753048-25753067 Msa0636020:three_prime_UTR 35.0%
!! GAGTGTTAAATTTGGTGTTC+AGG + chr4_3:25753098-25753117 Msa0636020:three_prime_UTR 35.0%
CGTTTGATAAATCTTGGTAG+TGG + chr4_3:25753291-25753310 Msa0636020:three_prime_UTR 35.0%
TAGTGGTCATATGCATACTT+TGG + chr4_3:25753308-25753327 Msa0636020:three_prime_UTR 35.0%
!!! GTCGCTCATTTTTATTTTCG+AGG - chr4_3:25753363-25753382 None:intergenic 35.0%
AATACAGATAGAGCGAAAGG+GGG + chr4_3:25748761-25748780 Msa0636020:five_prime_UTR 40.0%
ACTTGACTGAGGAAGAAAGA+AGG + chr4_3:25749050-25749069 Msa0636020:CDS 40.0%
CTTGACTGAGGAAGAAAGAA+GGG + chr4_3:25749051-25749070 Msa0636020:CDS 40.0%
TTGACTGAGGAAGAAAGAAG+GGG + chr4_3:25749052-25749071 Msa0636020:CDS 40.0%
GGGTTACAAAGAAGTGAGTT+GGG + chr4_3:25749072-25749091 Msa0636020:CDS 40.0%
ATGAGAATGAGGAAGGACTT+TGG + chr4_3:25749261-25749280 Msa0636020:intron 40.0%
TGAGAATGAGGAAGGACTTT+GGG + chr4_3:25749262-25749281 Msa0636020:intron 40.0%
TACAAGTGTTAGTGTCGTGT+CGG + chr4_3:25749494-25749513 Msa0636020:intron 40.0%
GTAGTGTGATATTGCATCCA+TGG + chr4_3:25749714-25749733 Msa0636020:intron 40.0%
! CAAAAAGTCAAAGATTGGCC+AGG - chr4_3:25749858-25749877 None:intergenic 40.0%
TAACGTGTTTAAACCGATGC+AGG + chr4_3:25750212-25750231 Msa0636020:intron 40.0%
! ACTTCGGGTCATGTATTTTC+GGG - chr4_3:25750244-25750263 None:intergenic 40.0%
! GTGTTGCTCTTCTATCTATG+TGG + chr4_3:25750448-25750467 Msa0636020:intron 40.0%
GTTAAGCTATCTTAGTGCTG+TGG + chr4_3:25750470-25750489 Msa0636020:intron 40.0%
!!! TCAGTTTTGAGAATTCCCCA+AGG + chr4_3:25750917-25750936 Msa0636020:intron 40.0%
! GCAAGATCGGCTTCAAATTT+AGG - chr4_3:25750958-25750977 None:intergenic 40.0%
CTCACAAAACTGAGCAAGAT+CGG - chr4_3:25750971-25750990 None:intergenic 40.0%
GAACATCAGCATACAAGCAA+AGG - chr4_3:25751049-25751068 None:intergenic 40.0%
CTGGTAATAATCACAGGTGA+TGG + chr4_3:25751079-25751098 Msa0636020:intron 40.0%
!! ATAATCACAGGTGATGGACT+TGG + chr4_3:25751085-25751104 Msa0636020:intron 40.0%
ACGAGAACGTCTTAATCAAG+AGG + chr4_3:25751127-25751146 Msa0636020:CDS 40.0%
AGAACGTCTTAATCAAGAGG+TGG + chr4_3:25751130-25751149 Msa0636020:CDS 40.0%
!! TCAGATTTTTCAGCTGTCAG+TGG - chr4_3:25751173-25751192 None:intergenic 40.0%
!!! GGTTCTTTATTTTCTCCTCC+AGG - chr4_3:25751208-25751227 None:intergenic 40.0%
! GAGATTCAACTTGTTCCAGA+AGG - chr4_3:25751229-25751248 None:intergenic 40.0%
! CTGGAACAAGTTGAATCTCT+TGG + chr4_3:25751230-25751249 Msa0636020:CDS 40.0%
TTGAATCTCTTGGTGAAGCT+GGG + chr4_3:25751240-25751259 Msa0636020:CDS 40.0%
AGCTGAAGCTCTTATGAGAA+AGG + chr4_3:25751274-25751293 Msa0636020:CDS 40.0%
TATACACAAGGAAAAGGGTG+TGG - chr4_3:25751314-25751333 None:intergenic 40.0%
ATTCACGAGAATCTCAGTCA+CGG - chr4_3:25751410-25751429 None:intergenic 40.0%
!! TTGCGGGGTATTTTTCTTTC+AGG + chr4_3:25751438-25751457 Msa0636020:intron 40.0%
GGAGACACTTAATACTGAGA+AGG + chr4_3:25751462-25751481 Msa0636020:CDS 40.0%
AATGCTTCAGGAGAAGAAGA+TGG + chr4_3:25751519-25751538 Msa0636020:CDS 40.0%
! GGAAGAAGAAAGATTGACTC+GGG + chr4_3:25751773-25751792 Msa0636020:CDS 40.0%
!! AAGATTGACTCGGGAAAAAG+AGG + chr4_3:25751782-25751801 Msa0636020:CDS 40.0%
ACGGAGTGATTCAAGTGATA+GGG + chr4_3:25751851-25751870 Msa0636020:CDS 40.0%
TAGGTACAGAGATAGAGACT+CGG + chr4_3:25751911-25751930 Msa0636020:CDS 40.0%
GAAAGATCTCGGGAATATGA+AGG + chr4_3:25751939-25751958 Msa0636020:CDS 40.0%
! ATGGTTTCTAGGTTGAGGAA+CGG + chr4_3:25751990-25752009 Msa0636020:CDS 40.0%
AGGTTGAGGAACGGAAAAAA+TGG + chr4_3:25751999-25752018 Msa0636020:CDS 40.0%
GAAAAAATGGAAGCAGAGAC+AGG + chr4_3:25752012-25752031 Msa0636020:CDS 40.0%
!! AAAGCTCTGAGATGGGAAAA+AGG - chr4_3:25752237-25752256 None:intergenic 40.0%
!! TCTCAAGAAAGCTCTGAGAT+GGG - chr4_3:25752244-25752263 None:intergenic 40.0%
ATTAATGGAGAAAAGGGTCG+AGG + chr4_3:25752291-25752310 Msa0636020:three_prime_UTR 40.0%
TGATTGTCATTGCCGCAAAA+GGG + chr4_3:25752475-25752494 Msa0636020:three_prime_UTR 40.0%
CAGCATTTATAAACCTGTGC+TGG - chr4_3:25752633-25752652 None:intergenic 40.0%
AGTATGAGTACCATGGATTC+GGG - chr4_3:25752749-25752768 None:intergenic 40.0%
GAGTATGAGTACCATGGATT+CGG - chr4_3:25752750-25752769 None:intergenic 40.0%
! TGTCCAATTGGTAACTCGTA+CGG + chr4_3:25752832-25752851 Msa0636020:three_prime_UTR 40.0%
ATTCCGTACGAGTTACCAAT+TGG - chr4_3:25752838-25752857 None:intergenic 40.0%
! AATTGGTAACTCGTACGGAA+TGG + chr4_3:25752837-25752856 Msa0636020:three_prime_UTR 40.0%
ACAAGTTATTGTGCGATTGG+AGG + chr4_3:25753051-25753070 Msa0636020:three_prime_UTR 40.0%
ATTGTGCGATTGGAGGTAAT+TGG + chr4_3:25753058-25753077 Msa0636020:three_prime_UTR 40.0%
! TCTTCTCTTGTTTGAGCTGT+TGG + chr4_3:25753445-25753464 Msa0636020:three_prime_UTR 40.0%
! CGATCGATTTATCGAGTGAG+TGG - chr4_3:25748998-25749017 None:intergenic 45.0%
TTCAGCTCGAAACTTGACTG+AGG + chr4_3:25749039-25749058 Msa0636020:intron 45.0%
GGGGTTACAAAGAAGTGAGT+TGG + chr4_3:25749071-25749090 Msa0636020:CDS 45.0%
! AGAAGTGAGTTGGGACGATA+AGG + chr4_3:25749081-25749100 Msa0636020:CDS 45.0%
TGGGACGATAAGGAAGTTTG+TGG + chr4_3:25749091-25749110 Msa0636020:CDS 45.0%
TGTTGACGAAGAGATCGTGA+GGG - chr4_3:25749138-25749157 None:intergenic 45.0%
TGAAGCATGGATACAGACAC+TGG + chr4_3:25749404-25749423 Msa0636020:intron 45.0%
GATTAGGTGTGTCCTGTAGT+CGG - chr4_3:25749527-25749546 None:intergenic 45.0%
TATGAAGCACGGATACTCCT+CGG - chr4_3:25749549-25749568 None:intergenic 45.0%
! GGGCTGCAGTTGATTTCAAA+GGG - chr4_3:25749670-25749689 None:intergenic 45.0%
TCAACCTAGACAGTCAATCC+TGG + chr4_3:25749771-25749790 Msa0636020:intron 45.0%
TTTGCCAGGATTGACTGTCT+AGG - chr4_3:25749778-25749797 None:intergenic 45.0%
ATGGGTAGCATACGCTCAAA+AGG - chr4_3:25750540-25750559 None:intergenic 45.0%
! GACTTGTTCAATTGGGGCTA+TGG + chr4_3:25750584-25750603 Msa0636020:intron 45.0%
TTGGTACGGTGCACTTCTAA+TGG - chr4_3:25750625-25750644 None:intergenic 45.0%
ACAATAGAGCAACCATGTGC+AGG - chr4_3:25750761-25750780 None:intergenic 45.0%
GAATGAGGATGGCAACAGAT+AGG - chr4_3:25751008-25751027 None:intergenic 45.0%
!! GATTTTTCAGCTGTCAGTGG+TGG - chr4_3:25751170-25751189 None:intergenic 45.0%
ATCTGAACAGTTGTCTGTCC+TGG + chr4_3:25751187-25751206 Msa0636020:CDS 45.0%
GTTGAATCTCTTGGTGAAGC+TGG + chr4_3:25751239-25751258 Msa0636020:CDS 45.0%
!! CGGGGTATTTTTCTTTCAGG+TGG + chr4_3:25751441-25751460 Msa0636020:intron 45.0%
GATTGCTAAGGAGAAGGCTA+AGG + chr4_3:25751752-25751771 Msa0636020:intron 45.0%
GCGAAGAAAACAAAAGGAGC+AGG + chr4_3:25751812-25751831 Msa0636020:CDS 45.0%
AGGATCCTGAGAGAAAGAGA+CGG + chr4_3:25751832-25751851 Msa0636020:CDS 45.0%
GACGGAGTGATTCAAGTGAT+AGG + chr4_3:25751850-25751869 Msa0636020:CDS 45.0%
ACTCGGATCGTGAAAGATCT+CGG + chr4_3:25751928-25751947 Msa0636020:CDS 45.0%
TCTCGGGAATATGAAGGTAG+AGG + chr4_3:25751945-25751964 Msa0636020:CDS 45.0%
AGGTAATCGAGATCGAGGAA+GGG + chr4_3:25751965-25751984 Msa0636020:CDS 45.0%
GTTGTGTTTGCTCCAAGTAG+TGG + chr4_3:25752093-25752112 Msa0636020:three_prime_UTR 45.0%
!! GTCTCAAGAAAGCTCTGAGA+TGG - chr4_3:25752245-25752264 None:intergenic 45.0%
GTGATTGTCATTGCCGCAAA+AGG + chr4_3:25752474-25752493 Msa0636020:three_prime_UTR 45.0%
GATTGTCATTGCCGCAAAAG+GGG + chr4_3:25752476-25752495 Msa0636020:three_prime_UTR 45.0%
! GAGTAAACCATCCCCTTTTG+CGG - chr4_3:25752490-25752509 None:intergenic 45.0%
! GAACTACAATCTGAAGGCAC+CGG + chr4_3:25752678-25752697 Msa0636020:three_prime_UTR 45.0%
!! GGCACCGGTTTAGAAGATAT+AGG + chr4_3:25752693-25752712 Msa0636020:three_prime_UTR 45.0%
TTAGGCATTTCCCGAATCCA+TGG + chr4_3:25752736-25752755 Msa0636020:three_prime_UTR 45.0%
ACTGTCATTGAACTGGGCTT+TGG + chr4_3:25753002-25753021 Msa0636020:three_prime_UTR 45.0%
CTGTCATTGAACTGGGCTTT+GGG + chr4_3:25753003-25753022 Msa0636020:three_prime_UTR 45.0%
CTTCTGGACATGATATGTGC+AGG + chr4_3:25753165-25753184 Msa0636020:three_prime_UTR 45.0%
GTAAATAACCGCGTCGTGAT+GGG + chr4_3:25753187-25753206 Msa0636020:three_prime_UTR 45.0%
!!! AAGTTTTTTTTTTTTTTTTA+CGG - chr4_3:25752876-25752895 None:intergenic 5.0%
!! TTCTTGCGGTGCTGTGTTGT+GGG - chr4_3:25748816-25748835 None:intergenic 50.0%
!! TTTCTTGCGGTGCTGTGTTG+TGG - chr4_3:25748817-25748836 None:intergenic 50.0%
! GTGTTGACGAAGAGATCGTG+AGG - chr4_3:25749139-25749158 None:intergenic 50.0%
GACTTTGGGTCCGTTTGGAT+TGG + chr4_3:25749276-25749295 Msa0636020:intron 50.0%
TACAGGACACACCTAATCCG+AGG + chr4_3:25749529-25749548 Msa0636020:intron 50.0%
! CGGGCTGCAGTTGATTTCAA+AGG - chr4_3:25749671-25749690 None:intergenic 50.0%
CCTGGCAAATCCCAAAGTAG+CGG + chr4_3:25749789-25749808 Msa0636020:intron 50.0%
! TCAGGCTGATCCGCTACTTT+GGG - chr4_3:25749802-25749821 None:intergenic 50.0%
!! AAAGTAGCGGATCAGCCTGA+GGG + chr4_3:25749802-25749821 Msa0636020:intron 50.0%
AGGTAGTCAATCCCGGATAG+CGG - chr4_3:25750056-25750075 None:intergenic 50.0%
CTATCCGGGATTGACTACCT+AGG + chr4_3:25750056-25750075 Msa0636020:intron 50.0%
GACACCTAGGTAGTCAATCC+CGG - chr4_3:25750063-25750082 None:intergenic 50.0%
CACGTATGCATCATGCCTTG+GGG - chr4_3:25750935-25750954 None:intergenic 50.0%
GCACGTATGCATCATGCCTT+GGG - chr4_3:25750936-25750955 None:intergenic 50.0%
TGAGGATGGCAACAGATAGG+TGG - chr4_3:25751005-25751024 None:intergenic 50.0%
! TTTTCAGCTGTCAGTGGTGG+CGG - chr4_3:25751167-25751186 None:intergenic 50.0%
TGAACAGTTGTCTGTCCTGG+AGG + chr4_3:25751190-25751209 Msa0636020:CDS 50.0%
ATCTCTTGGTGAAGCTGGGA+AGG + chr4_3:25751244-25751263 Msa0636020:CDS 50.0%
GAAGAAGATGGCACTCTGTG+AGG + chr4_3:25751531-25751550 Msa0636020:CDS 50.0%
ATGGCACTCTGTGAGGTATG+TGG + chr4_3:25751538-25751557 Msa0636020:CDS 50.0%
GGTATGTGGTTCGTTTCTCG+TGG + chr4_3:25751552-25751571 Msa0636020:CDS 50.0%
AGAACTCAGTCTCATGTCGC+AGG + chr4_3:25751592-25751611 Msa0636020:CDS 50.0%
! GGAAAGCAGCATGTTGGCTA+TGG + chr4_3:25751613-25751632 Msa0636020:CDS 50.0%
! GCAGCATGTTGGCTATGGTA+TGG + chr4_3:25751618-25751637 Msa0636020:CDS 50.0%
TCACTCCGTCTCTTTCTCTC+AGG - chr4_3:25751840-25751859 None:intergenic 50.0%
ATCGAGATAGGCAGCGTGAT+AGG + chr4_3:25751892-25751911 Msa0636020:CDS 50.0%
CTCGGATCGTGAAAGATCTC+GGG + chr4_3:25751929-25751948 Msa0636020:CDS 50.0%
GGTAGAGGTAATCGAGATCG+AGG + chr4_3:25751960-25751979 Msa0636020:CDS 50.0%
GAGGTAATCGAGATCGAGGA+AGG + chr4_3:25751964-25751983 Msa0636020:CDS 50.0%
GGTAATCGAGATCGAGGAAG+GGG + chr4_3:25751966-25751985 Msa0636020:CDS 50.0%
GTAATCGAGATCGAGGAAGG+GGG + chr4_3:25751967-25751986 Msa0636020:CDS 50.0%
GCAGAGACAGGTACCACAAT+CGG + chr4_3:25752024-25752043 Msa0636020:CDS 50.0%
AACGTGATCTGCTCCGATTG+TGG - chr4_3:25752040-25752059 None:intergenic 50.0%
ATGGAGAAAAGGGTCGAGGT+AGG + chr4_3:25752295-25752314 Msa0636020:three_prime_UTR 50.0%
GGTAAATAACCGCGTCGTGA+TGG + chr4_3:25753186-25753205 Msa0636020:three_prime_UTR 50.0%
! TTGTTTCTCCCATCACGACG+CGG - chr4_3:25753198-25753217 None:intergenic 50.0%
AGCTCTCCTCGACGAACTCA+TGG + chr4_3:25748937-25748956 Msa0636020:CDS 55.0%
GCTCTCCTCGACGAACTCAT+GGG + chr4_3:25748938-25748957 Msa0636020:CDS 55.0%
CTGAACCCATGAGTTCGTCG+AGG - chr4_3:25748946-25748965 None:intergenic 55.0%
CTCGACGAACTCATGGGTTC+AGG + chr4_3:25748944-25748963 Msa0636020:CDS 55.0%
GTCAACACGCGCAGTGATCT+CGG + chr4_3:25749151-25749170 Msa0636020:CDS 55.0%
GGAAGGACTTTGGGTCCGTT+TGG + chr4_3:25749271-25749290 Msa0636020:intron 55.0%
GCACGGATACTCCTCGGATT+AGG - chr4_3:25749543-25749562 None:intergenic 55.0%
!! CCGCTACTTTGGGATTTGCC+AGG - chr4_3:25749792-25749811 None:intergenic 55.0%
CTCAGGCTGATCCGCTACTT+TGG - chr4_3:25749803-25749822 None:intergenic 55.0%
!! CAAAGTAGCGGATCAGCCTG+AGG + chr4_3:25749801-25749820 Msa0636020:intron 55.0%
CAGCCTGAGGGAAATTGCGA+CGG + chr4_3:25749814-25749833 Msa0636020:intron 55.0%
TCTCCGTCGCAATTTCCCTC+AGG - chr4_3:25749820-25749839 None:intergenic 55.0%
TGAGGGAAATTGCGACGGAG+AGG + chr4_3:25749819-25749838 Msa0636020:intron 55.0%
AGAGGATTTCGTCGCGATCC+TGG + chr4_3:25749837-25749856 Msa0636020:intron 55.0%
! AGATCCCGCTACCCCACTTT+TGG + chr4_3:25750014-25750033 Msa0636020:intron 55.0%
!! GATCCCGCTACCCCACTTTT+GGG + chr4_3:25750015-25750034 Msa0636020:intron 55.0%
!! ATCCCGCTACCCCACTTTTG+GGG + chr4_3:25750016-25750035 Msa0636020:intron 55.0%
AGCAGTCGACCCCAAAAGTG+GGG - chr4_3:25750028-25750047 None:intergenic 55.0%
GAGCAGTCGACCCCAAAAGT+GGG - chr4_3:25750029-25750048 None:intergenic 55.0%
TTTCGGGCAAGCTCCTGCAT+CGG - chr4_3:25750228-25750247 None:intergenic 55.0%
TAGAGCAACCATGTGCAGGC+AGG - chr4_3:25750757-25750776 None:intergenic 55.0%
GGCACGTATGCATCATGCCT+TGG - chr4_3:25750937-25750956 None:intergenic 55.0%
GTCGCAGGAAAGCAGCATGT+TGG + chr4_3:25751607-25751626 Msa0636020:CDS 55.0%
GAGGAAGGGGGATGGTTTCT+AGG + chr4_3:25751979-25751998 Msa0636020:CDS 55.0%
! GGGGGATGGTTTCTAGGTTG+AGG + chr4_3:25751985-25752004 Msa0636020:CDS 55.0%
GTCATTGCCGCAAAAGGGGA+TGG + chr4_3:25752480-25752499 Msa0636020:three_prime_UTR 55.0%
GTCGGTGCATGTCCGACTAC+AGG + chr4_3:25749512-25749531 Msa0636020:intron 60.0%
GACCCCAAAAGTGGGGTAGC+GGG - chr4_3:25750021-25750040 None:intergenic 60.0%
CGACCCCAAAAGTGGGGTAG+CGG - chr4_3:25750022-25750041 None:intergenic 60.0%
GGAGCAGTCGACCCCAAAAG+TGG - chr4_3:25750030-25750049 None:intergenic 60.0%
ATGTGCAGGCAGGCAACTGC+AGG - chr4_3:25750747-25750766 None:intergenic 60.0%
TGCAGTTGCCTGCCTGCACA+TGG + chr4_3:25750746-25750765 Msa0636020:intron 60.0%
TCGAGATCGAGGAAGGGGGA+TGG + chr4_3:25751971-25751990 Msa0636020:CDS 60.0%
! GTCAATCCCGGATAGCGGCG+CGG - chr4_3:25750051-25750070 None:intergenic 65.0%
!! TCAGCTGTCAGTGGTGGCGG+TGG - chr4_3:25751164-25751183 None:intergenic 65.0%
GACTGCTCCGCGCCGCTATC+CGG + chr4_3:25750041-25750060 Msa0636020:intron 70.0%
ACTGCTCCGCGCCGCTATCC+GGG + chr4_3:25750042-25750061 Msa0636020:intron 70.0%
!! GCTGTCAGTGGTGGCGGTGG+TGG - chr4_3:25751161-25751180 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 25748723 25753567 25748723 ID=Msa0636020;Name=Msa0636020
chr4_3 mRNA 25748723 25753567 25748723 ID=Msa0636020-mRNA-1;Parent=Msa0636020;Name=Msa0636020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=200|1|1|1|0.85|0.75|8|1379|344
chr4_3 exon 25748723 25748965 25748723 ID=Msa0636020-mRNA-1:exon:6455;Parent=Msa0636020-mRNA-1
chr4_3 exon 25749044 25749172 25749044 ID=Msa0636020-mRNA-1:exon:6456;Parent=Msa0636020-mRNA-1
chr4_3 exon 25750234 25750273 25750234 ID=Msa0636020-mRNA-1:exon:6457;Parent=Msa0636020-mRNA-1
chr4_3 exon 25750921 25750996 25750921 ID=Msa0636020-mRNA-1:exon:6458;Parent=Msa0636020-mRNA-1
chr4_3 exon 25751095 25751295 25751095 ID=Msa0636020-mRNA-1:exon:6459;Parent=Msa0636020-mRNA-1
chr4_3 exon 25751460 25751666 25751460 ID=Msa0636020-mRNA-1:exon:6460;Parent=Msa0636020-mRNA-1
chr4_3 exon 25751753 25752153 25751753 ID=Msa0636020-mRNA-1:exon:6461;Parent=Msa0636020-mRNA-1
chr4_3 exon 25752251 25753567 25752251 ID=Msa0636020-mRNA-1:exon:6462;Parent=Msa0636020-mRNA-1
chr4_3 five_prime_UTR 25748723 25748922 25748723 ID=Msa0636020-mRNA-1:five_prime_utr;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25748923 25748965 25748923 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25749044 25749172 25749044 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25750234 25750273 25750234 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25750921 25750996 25750921 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25751095 25751295 25751095 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25751460 25751666 25751460 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 CDS 25751753 25752091 25751753 ID=Msa0636020-mRNA-1:cds;Parent=Msa0636020-mRNA-1
chr4_3 three_prime_UTR 25752092 25752153 25752092 ID=Msa0636020-mRNA-1:three_prime_utr;Parent=Msa0636020-mRNA-1
chr4_3 three_prime_UTR 25752251 25753567 25752251 ID=Msa0636020-mRNA-1:three_prime_utr;Parent=Msa0636020-mRNA-1
Gene Sequence

>Msa0636020

ATGGACGCTCAAAGAGCTCTCCTCGACGAACTCATGGGTTCAGCTCGAAACTTGACTGAGGAAGAAAGAAGGGGTTACAAAGAAGTGAGTTGGGACGATAAGGAAGTTTGTGGTTTCTATATGGTTCGCTTTTGCCCTCACGATCTCTTCGTCAACACGCGCAGTGATCTCGGAGCTTGCCCGAAAATACATGACCCGAAGTTGAAAGAAAATTTTGAGAATTCCCCAAGGCATGATGCATACGTGCCTAAATTTGAAGCCGATCTTGCTCAGTTTTGTGAGAAATTGGTGATGGACTTGGATAGAAGAGTAAAACGTGGACGAGAACGTCTTAATCAAGAGGTGGAGCTACCACCACCGCCACCACTGACAGCTGAAAAATCTGAACAGTTGTCTGTCCTGGAGGAGAAAATAAAGAACCTTCTGGAACAAGTTGAATCTCTTGGTGAAGCTGGGAAGGTTGATGAAGCTGAAGCTCTTATGAGAAAGGTGGAGACACTTAATACTGAGAAGGCAGTCTTAACACAACCTCAAAATGAAAAAGTGTTAATGCTTCAGGAGAAGAAGATGGCACTCTGTGAGGTATGTGGTTCGTTTCTCGTGGCAAATGATGCTGCAGAAAGAACTCAGTCTCATGTCGCAGGAAAGCAGCATGTTGGCTATGGTATGGTTCGTGACTTCATAAATGAATACAAGATTGCTAAGGAGAAGGCTAAGGAAGAAGAAAGATTGACTCGGGAAAAAGAGGTAGAAGAGCGAAGAAAACAAAAGGAGCAGGATCCTGAGAGAAAGAGACGGAGTGATTCAAGTGATAGGGAGAAATATCGTGATAAAGATCGAGATAGGCAGCGTGATAGGTACAGAGATAGAGACTCGGATCGTGAAAGATCTCGGGAATATGAAGGTAGAGGTAATCGAGATCGAGGAAGGGGGATGGTTTCTAGGTTGAGGAACGGAAAAAATGGAAGCAGAGACAGGTACCACAATCGGAGCAGATCACGTTCCCCTATTAAGCATAACTACAGAAGGTCTTGA

Protein sequence

>Msa0636020

MDAQRALLDELMGSARNLTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGACPKIHDPKLKENFENSPRHDAYVPKFEADLAQFCEKLVMDLDRRVKRGRERLNQEVELPPPPPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNTEKAVLTQPQNEKVLMLQEKKMALCEVCGSFLVANDAAERTQSHVAGKQHVGYGMVRDFINEYKIAKEKAKEEERLTREKEVEERRKQKEQDPERKRRSDSSDREKYRDKDRDRQRDRYRDRDSDRERSREYEGRGNRDRGRGMVSRLRNGKNGSRDRYHNRSRSRSPIKHNYRRS*