AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168430 MtrunA17_Chr1g0184851 94.828 232 3 1 1 232 1 223 3.43e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168430 AT5G43680.1 38.655 238 117 5 1 231 1 216 1.37e-45 152
Msa0168430 AT5G43680.2 38.655 238 117 5 1 231 1 216 1.37e-45 152

Find 98 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCACTCATATTTGATTT+TGG 0.082085 1_4:+51018024 None:intergenic
TCAGAAAGAACATGGTAATT+TGG 0.155371 1_4:-51024129 Msa0168430:five_prime_UTR
CATAGTTCAAGAAGCAATTT+TGG 0.174077 1_4:-51018090 Msa0168430:CDS
CAGAAAGAACATGGTAATTT+GGG 0.216346 1_4:-51024128 Msa0168430:five_prime_UTR
ACTTTGCATATTTAATGATT+TGG 0.278446 1_4:+51018890 None:intergenic
GTTACCAGTTCTTGTTCTTC+AGG 0.295064 1_4:-51017849 Msa0168430:three_prime_UTR
AATTGCATGAAAGATTTCTA+TGG 0.297115 1_4:+51024246 None:intergenic
TAGAAAGACAAGATTAATCT+AGG 0.299773 1_4:-51024155 Msa0168430:five_prime_UTR
TTATTCACCCCAGCATATTC+AGG 0.302866 1_4:+51019041 None:intergenic
TGCCGATGAACCATTCTTTA+CGG 0.317344 1_4:+51018830 None:intergenic
TTAGGTTCATAAGGAACTTC+AGG 0.325877 1_4:-51019307 Msa0168430:intron
AGCAACTGCTTATGCAAGTT+TGG 0.332765 1_4:-51018865 Msa0168430:CDS
GAGGCCATTCGTCATGAAAT+TGG 0.333625 1_4:-51019267 Msa0168430:CDS
AAGATAAAGAGAAGAAAAGT+TGG 0.334439 1_4:-51024098 Msa0168430:five_prime_UTR
AGCTAGCCTCCCTGCTGTTC+TGG 0.335117 1_4:+51019834 None:intergenic
TGGAGAAATATTTCTGTTGC+TGG 0.344609 1_4:-51019994 Msa0168430:CDS
TACATGGGAATATATGATTA+AGG 0.362365 1_4:-51021584 Msa0168430:intron
GGAGCTACTGCTGCTGTGAT+TGG 0.363534 1_4:-51019972 Msa0168430:intron
GATATCATTGGCAAATCCTT+TGG 0.363620 1_4:+51019856 None:intergenic
TAAGTTTATATTATAGCCTT+AGG 0.385991 1_4:+51024198 None:intergenic
CCAGTTTCTGCTGAAAATAC+TGG 0.392588 1_4:-51018756 Msa0168430:CDS
CTGTCCTGAAGAACAAGAAC+TGG 0.402531 1_4:+51017845 None:intergenic
ATTATAGCCTTAGGATGGAT+TGG 0.406189 1_4:+51024207 None:intergenic
AGAAGAAAAGTTGGGAATCA+AGG 0.406381 1_4:-51024089 Msa0168430:five_prime_UTR
AGCAGGGAGGCTAGCTGGAC+GGG 0.426637 1_4:-51019827 Msa0168430:CDS
GAAAGATTTCTATGGTTTGA+AGG 0.434429 1_4:+51024254 None:intergenic
AGGCTAGCTGGACGGGCAGT+TGG 0.440898 1_4:-51019820 Msa0168430:CDS
GATGAACCATTCTTTACGGC+AGG 0.443796 1_4:+51018834 None:intergenic
TTATCATGCCTCCGAGTTGA+TGG 0.457366 1_4:+51019219 None:intergenic
AATGGAACCTTTAGATTACA+TGG 0.459024 1_4:-51021600 Msa0168430:five_prime_UTR
GGCAGTTGGATATGTACAAT+TGG 0.468263 1_4:-51019806 Msa0168430:CDS
AGAACAGCAGGGAGGCTAGC+TGG 0.471150 1_4:-51019832 Msa0168430:CDS
TTATAGCCTTAGGATGGATT+GGG 0.473441 1_4:+51024208 None:intergenic
TCAAGAACACTGAACAATGC+TGG 0.476922 1_4:-51020027 Msa0168430:exon
TGCATATTTAATGATTTGGA+TGG 0.478378 1_4:+51018894 None:intergenic
CCTGCTGTTCTGGATATCAT+TGG 0.485428 1_4:+51019844 None:intergenic
AGCATATCATTCATAAATCC+TGG 0.488462 1_4:-51019243 Msa0168430:CDS
TTCTTGAGTGAGATTTCTGT+TGG 0.492774 1_4:+51020043 None:intergenic
GAAGTTGAGGATGTTAAAGT+TGG 0.493213 1_4:-51018798 Msa0168430:CDS
GGAGAAATATTTCTGTTGCT+GGG 0.498165 1_4:-51019993 Msa0168430:CDS
CAAAATCAAATATGAGTGAG+AGG 0.500227 1_4:-51018023 Msa0168430:exon
AATCTAAAGGTTCCATTGAC+CGG 0.502359 1_4:+51021606 None:intergenic
CCAATGATATCCAGAACAGC+AGG 0.503283 1_4:-51019844 Msa0168430:CDS
TCAGAGACTTAGCCGGTCAA+TGG 0.506574 1_4:-51021618 Msa0168430:five_prime_UTR
AGATAAAGAGAAGAAAAGTT+GGG 0.509028 1_4:-51024097 Msa0168430:five_prime_UTR
TTTATATTATAGCCTTAGGA+TGG 0.515236 1_4:+51024202 None:intergenic
TGCTTATGCAAGTTTGGCAC+AGG 0.516642 1_4:-51018859 Msa0168430:CDS
GACAGAAAACCTGAATATGC+TGG 0.517261 1_4:-51019050 Msa0168430:CDS
GGCAAATAGCACTGAAGTTG+AGG 0.519368 1_4:-51018811 Msa0168430:CDS
CAGGCCCCTGCCGTAAAGAA+TGG 0.521256 1_4:-51018840 Msa0168430:CDS
AGAAAGACAAGATTAATCTA+GGG 0.522172 1_4:-51024154 Msa0168430:five_prime_UTR
TATATTCCCATGTAATCTAA+AGG 0.522858 1_4:+51021593 None:intergenic
CTGGACTCTTACCAAATCGC+GGG 0.532450 1_4:-51018737 Msa0168430:CDS
CAAGAACACTGAACAATGCT+GGG 0.533552 1_4:-51020026 Msa0168430:exon
TGCCTCCGAGTTGATGGGCC+AGG 0.534429 1_4:+51019225 None:intergenic
CTCAATATCCTCTCATACCA+AGG 0.536160 1_4:-51019018 Msa0168430:intron
CACTCTACATTGATCAGCAT+CGG 0.536375 1_4:-51020103 Msa0168430:five_prime_UTR
AAATCACCCAATCCATCCTA+AGG 0.539087 1_4:-51024214 Msa0168430:five_prime_UTR
ACAGAAAACCTGAATATGCT+GGG 0.542451 1_4:-51019049 Msa0168430:CDS
TGAACCATTCTTTACGGCAG+GGG 0.552034 1_4:+51018836 None:intergenic
ACCAGCAAAATTATAGAAGT+AGG 0.554330 1_4:+51020077 None:intergenic
CAGCAGGGAGGCTAGCTGGA+CGG 0.554377 1_4:-51019828 Msa0168430:CDS
GAGTGAGATTTCTGTTGGAG+AGG 0.555526 1_4:+51020048 None:intergenic
TATCATGCCTCCGAGTTGAT+GGG 0.558095 1_4:+51019220 None:intergenic
GTATTAGGAGCTGATTTGAA+AGG 0.559557 1_4:-51018119 Msa0168430:intron
GGAAACAATGGCACAGCTAG+AGG 0.560838 1_4:-51019286 Msa0168430:CDS
GCTTCCAATTTCATGACGAA+TGG 0.565267 1_4:+51019263 None:intergenic
AGATTTCTATGGTTTGAAGG+TGG 0.576776 1_4:+51024257 None:intergenic
CTAGGGTTTCAGAAAGAACA+TGG 0.576985 1_4:-51024137 Msa0168430:five_prime_UTR
TGCCGTAAAGAATGGTTCAT+CGG 0.578762 1_4:-51018832 Msa0168430:CDS
TAACAGAATCAAACTGTCCA+CGG 0.582925 1_4:+51019782 None:intergenic
GACCAGGCATCTATCTCAGA+TGG 0.583124 1_4:-51019192 Msa0168430:intron
TGAATGTGCAATAGGTCCAA+AGG 0.583719 1_4:-51019872 Msa0168430:intron
TACCATCTGAGATAGATGCC+TGG 0.593353 1_4:+51019190 None:intergenic
AGAAAGAACATGGTAATTTG+GGG 0.593387 1_4:-51024127 Msa0168430:five_prime_UTR
TCATTCATCATAAGTATCAA+AGG 0.596158 1_4:-51024044 Msa0168430:intron
TAAATCCTGGCCCATCAACT+CGG 0.600125 1_4:-51019230 Msa0168430:CDS
TCAATAAACCTTGGTATGAG+AGG 0.600322 1_4:+51019010 None:intergenic
AAAATCAAATATGAGTGAGA+GGG 0.605811 1_4:-51018022 Msa0168430:exon
CTTCAGGACAGAAAATCTCA+AGG 0.613401 1_4:-51017833 Msa0168430:three_prime_UTR
ATGAACCATTCTTTACGGCA+GGG 0.614087 1_4:+51018835 None:intergenic
AACAGAATCAAACTGTCCAC+GGG 0.614960 1_4:+51019783 None:intergenic
TAAGGAACTTCAGGAAACAA+TGG 0.628004 1_4:-51019298 Msa0168430:CDS
GAAAGAACATGGTAATTTGG+GGG 0.628157 1_4:-51024126 Msa0168430:five_prime_UTR
ACTGGACTCTTACCAAATCG+CGG 0.630502 1_4:-51018738 Msa0168430:CDS
ATGGAACCTTTAGATTACAT+GGG 0.638090 1_4:-51021599 Msa0168430:five_prime_UTR
AGAGGTAGCTCATAATGCAA+AGG 0.639899 1_4:-51018063 Msa0168430:CDS
TTGAAGGTGGAAGAAGATGA+TGG 0.642881 1_4:+51024270 None:intergenic
GCAGCGATCTCAAGTTAACC+AGG 0.643061 1_4:-51019758 Msa0168430:intron
GAGGCATGATAATCTTGACC+AGG 0.644493 1_4:-51019208 Msa0168430:CDS
GGTGCATTCAGAGACTTAGC+CGG 0.651354 1_4:-51021625 Msa0168430:five_prime_UTR
TGGACTCTTACCAAATCGCG+GGG 0.678679 1_4:-51018736 Msa0168430:CDS
CAATGATATCCAGAACAGCA+GGG 0.689974 1_4:-51019843 Msa0168430:CDS
CAGAAAACCTGAATATGCTG+GGG 0.698864 1_4:-51019048 Msa0168430:CDS
ATCCTGGCCCATCAACTCGG+AGG 0.708372 1_4:-51019227 Msa0168430:CDS
GGATATGTACAATTGGCCCG+TGG 0.725712 1_4:-51019799 Msa0168430:CDS
TGATATCCAGAACAGCAGGG+AGG 0.762499 1_4:-51019840 Msa0168430:CDS
GGACTCTTACCAAATCGCGG+GGG 0.774422 1_4:-51018735 Msa0168430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATATAAAATAAATA+GGG + chr1_4:51020753-51020772 None:intergenic 0.0%
!! AATTTATATATAAAATAAAT+AGG + chr1_4:51020754-51020773 None:intergenic 0.0%
!! ATTTAAAAATAAAATAGACA+TGG + chr1_4:51019701-51019720 None:intergenic 10.0%
!! ATTAGAATAAAATAAAGTAT+TGG + chr1_4:51020176-51020195 None:intergenic 10.0%
!! AAATAATTAATTAATGTACT+TGG + chr1_4:51020720-51020739 None:intergenic 10.0%
!!! ATTTTCGATTTAATTTTTTT+TGG - chr1_4:51021627-51021646 Msa0168430:five_prime_UTR 10.0%
!!! AAAAAAGATTATGATTTTTT+TGG - chr1_4:51022531-51022550 Msa0168430:intron 10.0%
!!! TTTTTTTTAAAAAAAATGGA+AGG + chr1_4:51022684-51022703 Msa0168440:CDS 10.0%
!!! GTTTGTGTATTTTAAATTAT+GGG - chr1_4:51018416-51018435 Msa0168430:intron 15.0%
!!! TCTAATGATGTATATTTTAA+GGG + chr1_4:51020336-51020355 None:intergenic 15.0%
!!! ATCTAATGATGTATATTTTA+AGG + chr1_4:51020337-51020356 None:intergenic 15.0%
!! AATTATTATCAAGCATATAA+TGG + chr1_4:51020530-51020549 None:intergenic 15.0%
!!! AATTTTAGTATAAAGAGTAA+TGG - chr1_4:51020546-51020565 Msa0168430:intron 15.0%
!! AGTCATTAACAATTAATATT+AGG + chr1_4:51022390-51022409 None:intergenic 15.0%
!!! TTTAAAATGAATTTTTTCCA+TGG + chr1_4:51022459-51022478 None:intergenic 15.0%
!!! ACTATATTTTGTTATTCAAA+AGG - chr1_4:51023639-51023658 Msa0168430:intron 15.0%
!!! AAACAATTTTTATAATCTTC+TGG + chr1_4:51023738-51023757 None:intergenic 15.0%
!! ACTAATAAATAATGAAAAGA+AGG + chr1_4:51023787-51023806 None:intergenic 15.0%
!! ATTATTTATTAGTAAATGCA+CGG - chr1_4:51023794-51023813 Msa0168430:intron 15.0%
!!! GAAAAATTAAGGTATTATTT+AGG + chr1_4:51024053-51024072 None:intergenic 15.0%
!!! GTAGTTTTTGTTTGTTTTTA+CGG + chr1_4:51017751-51017770 None:intergenic 20.0%
!! TAAGTTTATATTATAGCCTT+AGG + chr1_4:51017850-51017869 None:intergenic 20.0%
!! TCAATCATTCATACATAATT+AGG + chr1_4:51018248-51018267 None:intergenic 20.0%
!! ATTATTATTAGCTGTTACAT+GGG + chr1_4:51018333-51018352 None:intergenic 20.0%
!!! GGTTTGTGTATTTTAAATTA+TGG - chr1_4:51018415-51018434 Msa0168430:intron 20.0%
!! AATATATAGATGTGATGAAT+GGG + chr1_4:51018737-51018756 None:intergenic 20.0%
!!! TATGATTTTGAATTTGAACA+GGG + chr1_4:51018767-51018786 None:intergenic 20.0%
!!! ATATGATTTTGAATTTGAAC+AGG + chr1_4:51018768-51018787 None:intergenic 20.0%
!!! CATTCATTACTTTGTTTTAT+TGG - chr1_4:51019671-51019690 Msa0168430:intron 20.0%
!! TACATCCTGTTTATTTAATT+AGG - chr1_4:51019874-51019893 Msa0168430:intron 20.0%
!! TATGTAATTAGTCATAGAAT+CGG - chr1_4:51020594-51020613 Msa0168430:intron 20.0%
!!! ATATAATATAATTTTGCCCT+TGG + chr1_4:51021295-51021314 None:intergenic 20.0%
!! TCATTATAATTAACATCTAC+AGG + chr1_4:51021674-51021693 None:intergenic 20.0%
!! TGTTAAATCAGTAAAAAATG+TGG - chr1_4:51021794-51021813 Msa0168430:intron 20.0%
!! GTTAAATCAGTAAAAAATGT+GGG - chr1_4:51021795-51021814 Msa0168430:intron 20.0%
!! TTTCTTCATTTAGAAATTTC+AGG + chr1_4:51022489-51022508 None:intergenic 20.0%
!!! TTATGATTTTTTTGGCATTT+TGG - chr1_4:51022539-51022558 Msa0168430:intron 20.0%
!!! CAAGTAAGATTTTAAAAGTT+AGG - chr1_4:51022609-51022628 Msa0168430:intron 20.0%
!! GTACATACTATAAAATTATC+AGG + chr1_4:51023071-51023090 Msa0168440:CDS 20.0%
!!! ACGTGTATATATTTATTTCT+AGG - chr1_4:51023114-51023133 Msa0168430:intron 20.0%
!! ACTTTGCATATTTAATGATT+TGG + chr1_4:51023158-51023177 Msa0168440:CDS 20.0%
!! AATAATTTAGATTACAGCTA+GGG + chr1_4:51023854-51023873 None:intergenic 20.0%
!! CTGTAATCTAAATTATTGAT+GGG - chr1_4:51023857-51023876 Msa0168430:intron 20.0%
! AATTGCATGAAAGATTTCTA+TGG + chr1_4:51017802-51017821 None:intergenic 25.0%
!! TTTATATTATAGCCTTAGGA+TGG + chr1_4:51017846-51017865 None:intergenic 25.0%
! TAGAAAGACAAGATTAATCT+AGG - chr1_4:51017890-51017909 Msa0168430:three_prime_UTR 25.0%
! AGAAAGACAAGATTAATCTA+GGG - chr1_4:51017891-51017910 Msa0168430:three_prime_UTR 25.0%
! AAGATAAAGAGAAGAAAAGT+TGG - chr1_4:51017947-51017966 Msa0168430:three_prime_UTR 25.0%
! AGATAAAGAGAAGAAAAGTT+GGG - chr1_4:51017948-51017967 Msa0168430:three_prime_UTR 25.0%
! TCATTCATCATAAGTATCAA+AGG - chr1_4:51018001-51018020 Msa0168430:three_prime_UTR 25.0%
! ATCTATGAATGTGAAAATCT+TGG - chr1_4:51018091-51018110 Msa0168430:CDS 25.0%
! TTATTATTAGCTGTTACATG+GGG + chr1_4:51018332-51018351 None:intergenic 25.0%
! CATTATTATTAGCTGTTACA+TGG + chr1_4:51018334-51018353 None:intergenic 25.0%
! AATCTTCCTTACATATTTGT+TGG + chr1_4:51018630-51018649 None:intergenic 25.0%
! GAATATATAGATGTGATGAA+TGG + chr1_4:51018738-51018757 None:intergenic 25.0%
!! ATGATTTTGAATTTGAACAG+GGG + chr1_4:51018766-51018785 None:intergenic 25.0%
! TCATCTAACTGAAAATCAAT+CGG - chr1_4:51019492-51019511 Msa0168430:intron 25.0%
!! TGAATTTTCATAGTACAAAC+AGG - chr1_4:51019516-51019535 Msa0168430:intron 25.0%
!! TATGTGTTTTCATATTGGAA+AGG + chr1_4:51019583-51019602 None:intergenic 25.0%
!! ACTTGTATGTGTTTTCATAT+TGG + chr1_4:51019588-51019607 None:intergenic 25.0%
!! TTTTGTGGACAAAAAATAAC+AGG + chr1_4:51019782-51019801 None:intergenic 25.0%
! TGCTTCCTAATTAAATAAAC+AGG + chr1_4:51019882-51019901 None:intergenic 25.0%
! TGTTTATTTAATTAGGAAGC+AGG - chr1_4:51019881-51019900 Msa0168430:intron 25.0%
! GTTTATTTAATTAGGAAGCA+GGG - chr1_4:51019882-51019901 Msa0168430:intron 25.0%
! ACCAAATGAAATTCTTAGTA+AGG - chr1_4:51019984-51020003 Msa0168430:CDS 25.0%
! CCAAATGAAATTCTTAGTAA+GGG - chr1_4:51019985-51020004 Msa0168430:CDS 25.0%
! AAAATATATGCAATTGTGGT+AGG + chr1_4:51020024-51020043 None:intergenic 25.0%
!! TACCACAATTGCATATATTT+TGG - chr1_4:51020023-51020042 Msa0168430:exon 25.0%
! CTAATATGAATAAGAAGAAC+CGG - chr1_4:51020191-51020210 Msa0168430:intron 25.0%
! TAATTTCTGTAAAACCTTTC+CGG + chr1_4:51020213-51020232 None:intergenic 25.0%
! AATCAAGTAAATTCTTAAGC+TGG - chr1_4:51020266-51020285 Msa0168430:intron 25.0%
! TATATTCCCATGTAATCTAA+AGG + chr1_4:51020455-51020474 None:intergenic 25.0%
! TACATGGGAATATATGATTA+AGG - chr1_4:51020461-51020480 Msa0168430:intron 25.0%
!! TCAAAAGGGTCTTATATTTA+GGG + chr1_4:51020656-51020675 None:intergenic 25.0%
!! GACAATTTCTTTTCTCAAAA+GGG + chr1_4:51020670-51020689 None:intergenic 25.0%
!! AGACAATTTCTTTTCTCAAA+AGG + chr1_4:51020671-51020690 None:intergenic 25.0%
! ATGTACTTGGAAATATCAAA+GGG + chr1_4:51020707-51020726 None:intergenic 25.0%
! AATGTACTTGGAAATATCAA+AGG + chr1_4:51020708-51020727 None:intergenic 25.0%
!! TAAAATAAATAGGGGTATGT+TGG + chr1_4:51020744-51020763 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+GGG + chr1_4:51020821-51020840 None:intergenic 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG + chr1_4:51020822-51020841 None:intergenic 25.0%
!! AACTAAACCATGATTTTACT+AGG - chr1_4:51020950-51020969 Msa0168430:intron 25.0%
!! GCTTTTATAGTATACTACAT+TGG - chr1_4:51021154-51021173 Msa0168430:intron 25.0%
!! TTTGTGTTTTATCCCAATTT+TGG - chr1_4:51021372-51021391 Msa0168430:intron 25.0%
!! TTGTGTTTTATCCCAATTTT+GGG - chr1_4:51021373-51021392 Msa0168430:intron 25.0%
! TATACCTGAAAAAGATTCAA+CGG + chr1_4:51021431-51021450 None:intergenic 25.0%
!!! TTACTGATTTAACAGAAACA+TGG + chr1_4:51021788-51021807 None:intergenic 25.0%
! GTATCATCTAATTTGAAAAG+TGG + chr1_4:51021846-51021865 None:intergenic 25.0%
! CTTCAGAATCAAATATTATC+TGG + chr1_4:51021912-51021931 None:intergenic 25.0%
! CAGATAATATTTGATTCTGA+AGG - chr1_4:51021910-51021929 Msa0168430:intron 25.0%
! TCTTACTTCTGTTTATCATA+AGG - chr1_4:51022110-51022129 Msa0168430:intron 25.0%
!! AATGCTTTAAATTGCTTATC+CGG - chr1_4:51022146-51022165 Msa0168430:intron 25.0%
!!! TTATAAGTTGATCGTAGAAA+GGG + chr1_4:51022319-51022338 None:intergenic 25.0%
!!! ATTATAAGTTGATCGTAGAA+AGG + chr1_4:51022320-51022339 None:intergenic 25.0%
! ATGACTTAATGTGTTACATT+TGG - chr1_4:51022404-51022423 Msa0168430:intron 25.0%
! TTGGTTTCTTGCTAAAAAAT+TGG - chr1_4:51022423-51022442 Msa0168430:intron 25.0%
! AAATTGGCAAAATATAACCA+TGG - chr1_4:51022439-51022458 Msa0168430:intron 25.0%
!! ACCAACATATGTTGTATTTT+AGG - chr1_4:51022720-51022739 Msa0168430:intron 25.0%
! ACCTAAAATACAACATATGT+TGG + chr1_4:51022724-51022743 Msa0168440:CDS 25.0%
!!! TGTTGTATTTTAGGTTCATA+AGG - chr1_4:51022729-51022748 Msa0168430:intron 25.0%
! AACATGGTTATACAAAATCT+CGG + chr1_4:51022950-51022969 Msa0168440:intron 25.0%
! TGCAACAATAAACAATAACA+TGG + chr1_4:51022966-51022985 Msa0168440:intron 25.0%
!! TAAAATTATCAGGTTGTATC+TGG + chr1_4:51023061-51023080 Msa0168440:CDS 25.0%
!! TGCATATTTAATGATTTGGA+TGG + chr1_4:51023154-51023173 Msa0168440:CDS 25.0%
!!! AATAATTTTTGCTGTGTAGT+TGG - chr1_4:51023337-51023356 Msa0168430:intron 25.0%
! GATATCAGACAATCATATTA+AGG + chr1_4:51023367-51023386 Msa0168440:CDS 25.0%
!!! ATTTTGTTATTCAAAAGGTC+CGG - chr1_4:51023644-51023663 Msa0168430:intron 25.0%
! TTCGTTCATTGTTTATACTT+TGG - chr1_4:51023689-51023708 Msa0168430:intron 25.0%
! CAATAATTTAGATTACAGCT+AGG + chr1_4:51023855-51023874 None:intergenic 25.0%
! GCTGTAATCTAAATTATTGA+TGG - chr1_4:51023856-51023875 Msa0168430:intron 25.0%
!!! TCTCACTCATATTTGATTTT+GGG + chr1_4:51024023-51024042 None:intergenic 25.0%
! AAAATCAAATATGAGTGAGA+GGG - chr1_4:51024023-51024042 Msa0168430:intron 25.0%
! GCTAACATCTAGAAAAATTA+AGG + chr1_4:51024064-51024083 None:intergenic 25.0%
!!! TAGTGTATATTTTAGCTTGA+AGG - chr1_4:51024111-51024130 Msa0168430:five_prime_UTR 25.0%
!!! ATATTTTAGCTTGAAGGTAT+TGG - chr1_4:51024117-51024136 Msa0168430:five_prime_UTR 25.0%
GAAAGATTTCTATGGTTTGA+AGG + chr1_4:51017794-51017813 None:intergenic 30.0%
TCAGAAAGAACATGGTAATT+TGG - chr1_4:51017916-51017935 Msa0168430:three_prime_UTR 30.0%
CAGAAAGAACATGGTAATTT+GGG - chr1_4:51017917-51017936 Msa0168430:three_prime_UTR 30.0%
AGAAAGAACATGGTAATTTG+GGG - chr1_4:51017918-51017937 Msa0168430:three_prime_UTR 30.0%
AATAATGAGGAATAAGGGAA+GGG + chr1_4:51018033-51018052 None:intergenic 30.0%
AAATAATGAGGAATAAGGGA+AGG + chr1_4:51018034-51018053 None:intergenic 30.0%
! TCCCTTATTCCTCATTATTT+TGG - chr1_4:51018034-51018053 Msa0168430:CDS 30.0%
CCCAAAATAATGAGGAATAA+GGG + chr1_4:51018038-51018057 None:intergenic 30.0%
! CCCTTATTCCTCATTATTTT+GGG - chr1_4:51018035-51018054 Msa0168430:CDS 30.0%
TCCCAAAATAATGAGGAATA+AGG + chr1_4:51018039-51018058 None:intergenic 30.0%
!!! TCCTCATTATTTTGGGATTA+AGG - chr1_4:51018042-51018061 Msa0168430:CDS 30.0%
!!! CCTCATTATTTTGGGATTAA+GGG - chr1_4:51018043-51018062 Msa0168430:CDS 30.0%
! ATGTTGTTTAGATGTCTAAC+AGG - chr1_4:51018285-51018304 Msa0168430:intron 30.0%
TTTAGATGTCTAACAGGTTA+AGG - chr1_4:51018291-51018310 Msa0168430:intron 30.0%
TTAGATGTCTAACAGGTTAA+GGG - chr1_4:51018292-51018311 Msa0168430:intron 30.0%
CAGCTAATAATAATGATCTC+AGG - chr1_4:51018339-51018358 Msa0168430:intron 30.0%
ACAATCAACATCACAAAACA+TGG + chr1_4:51018392-51018411 None:intergenic 30.0%
!! TTTTGTGATGTTGATTGTAC+TGG - chr1_4:51018394-51018413 Msa0168430:intron 30.0%
TTATTCAATTAAGTACCAGC+AGG - chr1_4:51018844-51018863 Msa0168430:CDS 30.0%
! AACTTTCAGTAACGATTTTG+TGG - chr1_4:51018929-51018948 Msa0168430:intron 30.0%
TTATCAAGTCAAGGATTGTT+TGG + chr1_4:51019105-51019124 None:intergenic 30.0%
!! GATTGATTTTCAGTTAGATG+AGG + chr1_4:51019493-51019512 None:intergenic 30.0%
CAAAGTAATGAATGAAGAGT+AGG + chr1_4:51019665-51019684 None:intergenic 30.0%
! TGAAGGTGAAACATATTTTG+TGG + chr1_4:51019797-51019816 None:intergenic 30.0%
!!! TGTTTCACCTTCACTTTTTT+AGG - chr1_4:51019804-51019823 Msa0168430:CDS 30.0%
AGGTTATCCTAAAAAAGTGA+AGG + chr1_4:51019814-51019833 None:intergenic 30.0%
GCATGATCAAACTCATAAAA+AGG + chr1_4:51019834-51019853 None:intergenic 30.0%
CCCTTACTAAGAATTTCATT+TGG + chr1_4:51019988-51020007 None:intergenic 30.0%
CTCCAAAATATATGCAATTG+TGG + chr1_4:51020028-51020047 None:intergenic 30.0%
!! AGTGAAGTTCAAAGTGTTTT+GGG - chr1_4:51020073-51020092 Msa0168430:five_prime_UTR 30.0%
CATGATATGTTAGGTTTAGT+GGG - chr1_4:51020117-51020136 Msa0168430:intron 30.0%
!! AGTGATAAGTTGATGTTTGT+AGG - chr1_4:51020399-51020418 Msa0168430:intron 30.0%
AATGGAACCTTTAGATTACA+TGG - chr1_4:51020445-51020464 Msa0168430:intron 30.0%
ATGGAACCTTTAGATTACAT+GGG - chr1_4:51020446-51020465 Msa0168430:intron 30.0%
TAAGGTGAAGAGATTAGTAA+AGG - chr1_4:51020479-51020498 Msa0168430:intron 30.0%
! CTCAAAAGGGTCTTATATTT+AGG + chr1_4:51020657-51020676 None:intergenic 30.0%
TGTACTTGGAAATATCAAAG+GGG + chr1_4:51020706-51020725 None:intergenic 30.0%
!!! ATTCCCGTTATTTTTCCAAA+AGG - chr1_4:51020894-51020913 Msa0168430:intron 30.0%
!!! TTCCCGTTATTTTTCCAAAA+GGG - chr1_4:51020895-51020914 Msa0168430:intron 30.0%
AAAGTCTTAGGTATCAGTTA+CGG - chr1_4:51021100-51021119 Msa0168430:intron 30.0%
TACTATAAAAGCTTTGCAAG+TGG + chr1_4:51021146-51021165 None:intergenic 30.0%
!!! GTTGAATCTTTTTCAGGTAT+AGG - chr1_4:51021430-51021449 Msa0168430:intron 30.0%
AACAGAAACATGGAAAGAAA+AGG + chr1_4:51021778-51021797 None:intergenic 30.0%
! TCCTACTTCTATAATTTTGC+TGG - chr1_4:51021967-51021986 Msa0168430:intron 30.0%
ACCAGCAAAATTATAGAAGT+AGG + chr1_4:51021971-51021990 None:intergenic 30.0%
CGATCAACTTATAATTCACA+TGG - chr1_4:51022325-51022344 Msa0168430:intron 30.0%
TTAGGAACATCATAACATCA+AGG - chr1_4:51022627-51022646 Msa0168430:intron 30.0%
AGCATATCATTCATAAATCC+TGG - chr1_4:51022802-51022821 Msa0168430:intron 30.0%
TTTATAGTATGTACTGCTCT+AGG - chr1_4:51023077-51023096 Msa0168430:intron 30.0%
GTTGAGAAAAAATCTATCAC+AGG + chr1_4:51023462-51023481 Msa0168440:CDS 30.0%
TTCAATACATGCTTATGTAC+AGG - chr1_4:51023549-51023568 Msa0168430:intron 30.0%
! TGTTTATACTTTGGCTCATT+TGG - chr1_4:51023698-51023717 Msa0168430:intron 30.0%
! ATCTGATTTGAAACAAGCTT+TGG - chr1_4:51023901-51023920 Msa0168430:intron 30.0%
! AAACAAGCTTTGGTTGTATT+AGG - chr1_4:51023911-51023930 Msa0168430:intron 30.0%
! CATAGTTCAAGAAGCAATTT+TGG - chr1_4:51023955-51023974 Msa0168430:intron 30.0%
!! CTCACTCATATTTGATTTTG+GGG + chr1_4:51024022-51024041 None:intergenic 30.0%
!! CTCTCACTCATATTTGATTT+TGG + chr1_4:51024024-51024043 None:intergenic 30.0%
CAAAATCAAATATGAGTGAG+AGG - chr1_4:51024022-51024041 Msa0168430:intron 30.0%
!! GAATGCTTGTGTTTTTAACT+AGG - chr1_4:51024234-51024253 Msa0168430:five_prime_UTR 30.0%
! ATCGCTACGTATATCATTTT+TGG + chr1_4:51024279-51024298 None:intergenic 30.0%
AGATTTCTATGGTTTGAAGG+TGG + chr1_4:51017791-51017810 None:intergenic 35.0%
! TTATAGCCTTAGGATGGATT+GGG + chr1_4:51017840-51017859 None:intergenic 35.0%
! ATTATAGCCTTAGGATGGAT+TGG + chr1_4:51017841-51017860 None:intergenic 35.0%
GAAAGAACATGGTAATTTGG+GGG - chr1_4:51017919-51017938 Msa0168430:three_prime_UTR 35.0%
AGAAGAAAAGTTGGGAATCA+AGG - chr1_4:51017956-51017975 Msa0168430:three_prime_UTR 35.0%
CCCTTAATCCCAAAATAATG+AGG + chr1_4:51018046-51018065 None:intergenic 35.0%
TGGGATTAAGGGTTTGAATT+TGG - chr1_4:51018054-51018073 Msa0168430:CDS 35.0%
GGGATTAAGGGTTTGAATTT+GGG - chr1_4:51018055-51018074 Msa0168430:CDS 35.0%
!! AAGGGTTTGAATTTGGGTTT+TGG - chr1_4:51018061-51018080 Msa0168430:CDS 35.0%
!! AGGGTTTGAATTTGGGTTTT+GGG - chr1_4:51018062-51018081 Msa0168430:CDS 35.0%
TAGATGTCTAACAGGTTAAG+GGG - chr1_4:51018293-51018312 Msa0168430:intron 35.0%
TCGAATATGTCAAAGCGAAA+TGG + chr1_4:51018509-51018528 None:intergenic 35.0%
AAGCAGAGTTTGAAGAAGAA+AGG + chr1_4:51018558-51018577 None:intergenic 35.0%
CACTTGCCAACAAATATGTA+AGG - chr1_4:51018621-51018640 Msa0168430:intron 35.0%
ATAGATGTGATGAATGGGAA+TGG + chr1_4:51018732-51018751 None:intergenic 35.0%
TTCCCAACGCAATTTACAAA+CGG - chr1_4:51018882-51018901 Msa0168430:CDS 35.0%
TTCCGTTTGTAAATTGCGTT+GGG + chr1_4:51018887-51018906 None:intergenic 35.0%
!! ACTGAAAGTTTGTTAGCTCT+TGG + chr1_4:51018919-51018938 None:intergenic 35.0%
! CTAAAACGCGTTTTTCGTTT+TGG + chr1_4:51019060-51019079 None:intergenic 35.0%
TGTGAAATACTCAAGGTAAG+TGG + chr1_4:51019132-51019151 None:intergenic 35.0%
!!! ATTTTAGCTTCTGTCAAGTG+TGG + chr1_4:51019246-51019265 None:intergenic 35.0%
!!! TGTTTTGAGAATTTCTGCAC+CGG + chr1_4:51019394-51019413 None:intergenic 35.0%
CCATTGATCTCAGAATGTAA+TGG + chr1_4:51019617-51019636 None:intergenic 35.0%
!! CCATTACATTCTGAGATCAA+TGG - chr1_4:51019614-51019633 Msa0168430:intron 35.0%
! TGAATGAAGAGTAGGTTGAA+GGG + chr1_4:51019657-51019676 None:intergenic 35.0%
! ATGAATGAAGAGTAGGTTGA+AGG + chr1_4:51019658-51019677 None:intergenic 35.0%
TGAAATTCTTAGTAAGGGTG+TGG - chr1_4:51019990-51020009 Msa0168430:CDS 35.0%
!! CAGTGAAGTTCAAAGTGTTT+TGG - chr1_4:51020072-51020091 Msa0168430:five_prime_UTR 35.0%
GGAGACAAATGATAGATAGT+AGG - chr1_4:51020094-51020113 Msa0168430:five_prime_UTR 35.0%
GATAGTAGGCATGATATGTT+AGG - chr1_4:51020108-51020127 Msa0168430:five_prime_UTR 35.0%
GCATGATATGTTAGGTTTAG+TGG - chr1_4:51020116-51020135 Msa0168430:five_prime_UTR 35.0%
GATAACTATAAACAGCTTGC+CGG + chr1_4:51020154-51020173 None:intergenic 35.0%
ATGAATAAGAAGAACCGGAA+AGG - chr1_4:51020196-51020215 Msa0168430:intron 35.0%
AATCTAAAGGTTCCATTGAC+CGG + chr1_4:51020442-51020461 None:intergenic 35.0%
! AAGGGTCTTATATTTAGGGA+CGG + chr1_4:51020652-51020671 None:intergenic 35.0%
!! TGGCCCTTTTGGAAAAATAA+CGG + chr1_4:51020901-51020920 None:intergenic 35.0%
TCCAAAAGGGCCATATAATT+AGG - chr1_4:51020908-51020927 Msa0168430:intron 35.0%
CCAAAAGGGCCATATAATTA+GGG - chr1_4:51020909-51020928 Msa0168430:intron 35.0%
TACCTCCATCCCTAATTATA+TGG + chr1_4:51020921-51020940 None:intergenic 35.0%
! ACCATGATTTTACTAGGTTG+TGG - chr1_4:51020956-51020975 Msa0168430:intron 35.0%
ACCACAACCTAGTAAAATCA+TGG + chr1_4:51020960-51020979 None:intergenic 35.0%
AAAAGATACTTTCTCTGCCT+AGG + chr1_4:51020990-51021009 None:intergenic 35.0%
TAGAAGCTAAGACAATTCTC+CGG - chr1_4:51021068-51021087 Msa0168430:intron 35.0%
ATTGGCATAACGAATCATGT+TGG - chr1_4:51021172-51021191 Msa0168430:intron 35.0%
TTGGCATAACGAATCATGTT+GGG - chr1_4:51021173-51021192 Msa0168430:intron 35.0%
TAACCCACATCCAAATGATT+TGG - chr1_4:51021196-51021215 Msa0168430:intron 35.0%
!! ATCGATCAGTTGTTTTACCA+AGG - chr1_4:51021275-51021294 Msa0168430:intron 35.0%
!! TCGATCAGTTGTTTTACCAA+GGG - chr1_4:51021276-51021295 Msa0168430:intron 35.0%
CTCAATGAGTTCCCAAAATT+GGG + chr1_4:51021387-51021406 None:intergenic 35.0%
TGAAAAAGATTCAACGGAGT+GGG + chr1_4:51021425-51021444 None:intergenic 35.0%
!!! TTTTCAGGTATAGGCCATTT+TGG - chr1_4:51021439-51021458 Msa0168430:intron 35.0%
!!! TAGGCCATTTTGGAGTTATT+CGG - chr1_4:51021449-51021468 Msa0168430:intron 35.0%
! CTAGTACATTTTCTCCTCAA+AGG + chr1_4:51021743-51021762 None:intergenic 35.0%
TTCTTGAGTGAGATTTCTGT+TGG + chr1_4:51022005-51022024 None:intergenic 35.0%
! ACAATGCTGGGATTTTCATT+TGG - chr1_4:51022031-51022050 Msa0168430:intron 35.0%
! TGGAGAAATATTTCTGTTGC+TGG - chr1_4:51022051-51022070 Msa0168430:intron 35.0%
! GGAGAAATATTTCTGTTGCT+GGG - chr1_4:51022052-51022071 Msa0168430:intron 35.0%
! CCTATTGCACATTCATTTTC+CGG + chr1_4:51022168-51022187 None:intergenic 35.0%
GATATCATTGGCAAATCCTT+TGG + chr1_4:51022192-51022211 None:intergenic 35.0%
TAACAGAATCAAACTGTCCA+CGG + chr1_4:51022266-51022285 None:intergenic 35.0%
AAAGTGAATCGCATGTAGTT+GGG + chr1_4:51022568-51022587 Msa0168440:CDS 35.0%
!! GACTTTACCACGTTTTAGTA+TGG + chr1_4:51022662-51022681 Msa0168440:CDS 35.0%
TTAGGTTCATAAGGAACTTC+AGG - chr1_4:51022738-51022757 Msa0168430:intron 35.0%
TAAGGAACTTCAGGAAACAA+TGG - chr1_4:51022747-51022766 Msa0168430:intron 35.0%
CAAAATCTCGGCAATTGTAT+CGG + chr1_4:51022938-51022957 Msa0168440:intron 35.0%
ACAGAAAACCTGAATATGCT+GGG - chr1_4:51022996-51023015 Msa0168430:intron 35.0%
TCAATAAACCTTGGTATGAG+AGG + chr1_4:51023038-51023057 Msa0168440:CDS 35.0%
TGTATCTGGTCAATAAACCT+TGG + chr1_4:51023047-51023066 Msa0168440:CDS 35.0%
GAAGTTGAGGATGTTAAAGT+TGG - chr1_4:51023247-51023266 Msa0168430:intron 35.0%
TTGTGATCCTGTGATGTTTA+TGG - chr1_4:51023510-51023529 Msa0168430:intron 35.0%
AAGAAAGCCATAAACATCAC+AGG + chr1_4:51023520-51023539 Msa0168440:CDS 35.0%
CAAGCAAAAACCTTAACTTC+CGG + chr1_4:51023666-51023685 None:intergenic 35.0%
!! GTATTAGGAGCTGATTTGAA+AGG - chr1_4:51023926-51023945 Msa0168430:intron 35.0%
! AGTTCAAGAAGCAATTTTGG+AGG - chr1_4:51023958-51023977 Msa0168430:intron 35.0%
TTGAAGGTGGAAGAAGATGA+TGG + chr1_4:51017778-51017797 None:intergenic 40.0%
AAATCACCCAATCCATCCTA+AGG - chr1_4:51017831-51017850 Msa0168430:three_prime_UTR 40.0%
CTAGGGTTTCAGAAAGAACA+TGG - chr1_4:51017908-51017927 Msa0168430:three_prime_UTR 40.0%
AATGGCTCTCATCTTACACA+CGG + chr1_4:51018491-51018510 None:intergenic 40.0%
!! TGATCGTTTACAGAGTATCG+TGG + chr1_4:51018601-51018620 None:intergenic 40.0%
ATGTGATGAATGGGAATGGA+AGG + chr1_4:51018728-51018747 None:intergenic 40.0%
AAATCCTCTTCATATCCTGC+TGG + chr1_4:51018862-51018881 None:intergenic 40.0%
CTTCCGTTTGTAAATTGCGT+TGG + chr1_4:51018888-51018907 None:intergenic 40.0%
AGTGGTGGTTTATCAAGTCA+AGG + chr1_4:51019114-51019133 None:intergenic 40.0%
GAAATACTCAAGGTAAGTGG+TGG + chr1_4:51019129-51019148 None:intergenic 40.0%
CGAAGCATGTGAAATACTCA+AGG + chr1_4:51019139-51019158 None:intergenic 40.0%
!!! TGTTGATTTTGAACCGAGCT+CGG + chr1_4:51019325-51019344 None:intergenic 40.0%
TTGTTAAGTCACGGCTAAAG+CGG + chr1_4:51019440-51019459 None:intergenic 40.0%
TTTAGCCGTGACTTAACAAC+CGG - chr1_4:51019441-51019460 Msa0168430:intron 40.0%
TTAAGCCGGTTGTTAAGTCA+CGG + chr1_4:51019449-51019468 None:intergenic 40.0%
TGAAGGGAAAATGAGATGGA+TGG + chr1_4:51019641-51019660 None:intergenic 40.0%
AGGTTGAAGGGAAAATGAGA+TGG + chr1_4:51019645-51019664 None:intergenic 40.0%
!!! ACAGAGAGTGGTCTAGTTTT+TGG - chr1_4:51019943-51019962 Msa0168430:intron 40.0%
!!! CAGAGAGTGGTCTAGTTTTT+GGG - chr1_4:51019944-51019963 Msa0168430:intron 40.0%
! TTTGGGTGAAAGTGTGTAAC+AGG - chr1_4:51019961-51019980 Msa0168430:intron 40.0%
GGCATTGCTATATATTGCGA+CGG + chr1_4:51020315-51020334 None:intergenic 40.0%
ACACTAACCCTCTCTCTTAA+AGG - chr1_4:51020811-51020830 Msa0168430:intron 40.0%
!! GGCCCTTTTGGAAAAATAAC+GGG + chr1_4:51020900-51020919 None:intergenic 40.0%
! CCCTAATTATATGGCCCTTT+TGG + chr1_4:51020912-51020931 None:intergenic 40.0%
AAGGGCCATATAATTAGGGA+TGG - chr1_4:51020913-51020932 Msa0168430:intron 40.0%
AGAAGCTAAGACAATTCTCC+GGG - chr1_4:51021069-51021088 Msa0168430:intron 40.0%
TTAGGTATCAGTTACGGTGT+AGG - chr1_4:51021106-51021125 Msa0168430:intron 40.0%
GTGCCAAATCATTTGGATGT+GGG + chr1_4:51021202-51021221 None:intergenic 40.0%
TGTGCCAAATCATTTGGATG+TGG + chr1_4:51021203-51021222 None:intergenic 40.0%
TTTGCGTGTGCCAAATCATT+TGG + chr1_4:51021209-51021228 None:intergenic 40.0%
GCTCAATGAGTTCCCAAAAT+TGG + chr1_4:51021388-51021407 None:intergenic 40.0%
CTGAAAAAGATTCAACGGAG+TGG + chr1_4:51021426-51021445 None:intergenic 40.0%
! CACTCCGTTGAATCTTTTTC+AGG - chr1_4:51021424-51021443 Msa0168430:intron 40.0%
TAACTCTAGACACTGTGATC+TGG + chr1_4:51021477-51021496 None:intergenic 40.0%
! AGATCACAGTGTCTAGAGTT+AGG - chr1_4:51021476-51021495 Msa0168430:intron 40.0%
AGGAGGTTAAACTACAACTG+AGG + chr1_4:51021505-51021524 None:intergenic 40.0%
TCAGCCACATGTTACAAAGA+GGG + chr1_4:51021528-51021547 None:intergenic 40.0%
ATCAGCCACATGTTACAAAG+AGG + chr1_4:51021529-51021548 None:intergenic 40.0%
CACTCTACATTGATCAGCAT+CGG - chr1_4:51021942-51021961 Msa0168430:intron 40.0%
TCAAGAACACTGAACAATGC+TGG - chr1_4:51022018-51022037 Msa0168430:intron 40.0%
CAAGAACACTGAACAATGCT+GGG - chr1_4:51022019-51022038 Msa0168430:intron 40.0%
CCGGAAAATGAATGTGCAAT+AGG - chr1_4:51022165-51022184 Msa0168430:intron 40.0%
TGAATGTGCAATAGGTCCAA+AGG - chr1_4:51022173-51022192 Msa0168430:intron 40.0%
CAATGATATCCAGAACAGCA+GGG - chr1_4:51022202-51022221 Msa0168430:intron 40.0%
GGCAGTTGGATATGTACAAT+TGG - chr1_4:51022239-51022258 Msa0168430:intron 40.0%
AACAGAATCAAACTGTCCAC+GGG + chr1_4:51022265-51022284 None:intergenic 40.0%
CAAAGTGAATCGCATGTAGT+TGG + chr1_4:51022569-51022588 Msa0168440:CDS 40.0%
!! TACCACGTTTTAGTATGGAC+AGG + chr1_4:51022657-51022676 Msa0168440:CDS 40.0%
GCTTCCAATTTCATGACGAA+TGG + chr1_4:51022785-51022804 Msa0168440:CDS 40.0%
GACAGAAAACCTGAATATGC+TGG - chr1_4:51022995-51023014 Msa0168430:intron 40.0%
CAGAAAACCTGAATATGCTG+GGG - chr1_4:51022997-51023016 Msa0168430:intron 40.0%
TTATTCACCCCAGCATATTC+AGG + chr1_4:51023007-51023026 Msa0168440:intron 40.0%
CTCAATATCCTCTCATACCA+AGG - chr1_4:51023027-51023046 Msa0168430:intron 40.0%
AGCAACTGCTTATGCAAGTT+TGG - chr1_4:51023180-51023199 Msa0168430:intron 40.0%
ATGAACCATTCTTTACGGCA+GGG + chr1_4:51023213-51023232 Msa0168440:intron 40.0%
TGCCGTAAAGAATGGTTCAT+CGG - chr1_4:51023213-51023232 Msa0168430:intron 40.0%
TGCCGATGAACCATTCTTTA+CGG + chr1_4:51023218-51023237 Msa0168440:intron 40.0%
! CCAGTATTTTCAGCAGAAAC+TGG + chr1_4:51023292-51023311 Msa0168440:intron 40.0%
CCAGTTTCTGCTGAAAATAC+TGG - chr1_4:51023289-51023308 Msa0168430:intron 40.0%
TTATTATTACCCCCGCGATT+TGG + chr1_4:51023322-51023341 Msa0168440:CDS 40.0%
TTCAAAAGGTCCGGAAGTTA+AGG - chr1_4:51023653-51023672 Msa0168430:intron 40.0%
AGAGGTAGCTCATAATGCAA+AGG - chr1_4:51023982-51024001 Msa0168430:intron 40.0%
GTTACCAGTTCTTGTTCTTC+AGG - chr1_4:51024196-51024215 Msa0168430:five_prime_UTR 40.0%
CTTCAGGACAGAAAATCTCA+AGG - chr1_4:51024212-51024231 Msa0168430:five_prime_UTR 40.0%
ACATATTCGACTCTCCTCCA+CGG - chr1_4:51018519-51018538 Msa0168430:intron 45.0%
TATCGTGGCTATTGTATCCG+AGG + chr1_4:51018586-51018605 None:intergenic 45.0%
AGTACCAGCAGGATATGAAG+AGG - chr1_4:51018855-51018874 Msa0168430:CDS 45.0%
!! TTTTCGTTTTGGACAGGGGT+TGG + chr1_4:51019049-51019068 None:intergenic 45.0%
!! GCGTTTTTCGTTTTGGACAG+GGG + chr1_4:51019053-51019072 None:intergenic 45.0%
!! CGCGTTTTTCGTTTTGGACA+GGG + chr1_4:51019054-51019073 None:intergenic 45.0%
!! ACGCGTTTTTCGTTTTGGAC+AGG + chr1_4:51019055-51019074 None:intergenic 45.0%
! AATGGTGACGAACTACATCG+AGG + chr1_4:51019289-51019308 None:intergenic 45.0%
ACAGCTTCTCTGCATAAACG+CGG - chr1_4:51019342-51019361 Msa0168430:intron 45.0%
GAAGATCACTGGTGGTAGTT+TGG + chr1_4:51019370-51019389 None:intergenic 45.0%
TTCATCGAGCGACAATTCTC+TGG + chr1_4:51019417-51019436 None:intergenic 45.0%
! GACTTAACAACCGGCTTAAC+CGG - chr1_4:51019450-51019469 Msa0168430:intron 45.0%
CAGTTAGATGAGGAGAGAAC+CGG + chr1_4:51019483-51019502 None:intergenic 45.0%
! TGTTAGGTTTAGTGGGCAAC+AGG - chr1_4:51020124-51020143 Msa0168430:intron 45.0%
! GGTCTTATATTTAGGGACGG+AGG + chr1_4:51020649-51020668 None:intergenic 45.0%
GGCCATATAATTAGGGATGG+AGG - chr1_4:51020916-51020935 Msa0168430:intron 45.0%
AGGTTGTGGTAATCACACCT+AGG - chr1_4:51020970-51020989 Msa0168430:intron 45.0%
GGCTCCGAATAACTCCAAAA+TGG + chr1_4:51021456-51021475 None:intergenic 45.0%
ACATGTTACAAAGAGGGAGG+AGG + chr1_4:51021522-51021541 None:intergenic 45.0%
TCCTCCCTCTTTGTAACATG+TGG - chr1_4:51021521-51021540 Msa0168430:intron 45.0%
GAGTGAGATTTCTGTTGGAG+AGG + chr1_4:51022000-51022019 None:intergenic 45.0%
! CCTGCTGTTCTGGATATCAT+TGG + chr1_4:51022204-51022223 None:intergenic 45.0%
CCAATGATATCCAGAACAGC+AGG - chr1_4:51022201-51022220 Msa0168430:intron 45.0%
TGCCTGTCCATACTAAAACG+TGG - chr1_4:51022652-51022671 Msa0168430:intron 45.0%
GAGGCCATTCGTCATGAAAT+TGG - chr1_4:51022778-51022797 Msa0168430:intron 45.0%
TAAATCCTGGCCCATCAACT+CGG - chr1_4:51022815-51022834 Msa0168430:intron 45.0%
!! TATCATGCCTCCGAGTTGAT+GGG + chr1_4:51022828-51022847 Msa0168440:CDS 45.0%
! TTATCATGCCTCCGAGTTGA+TGG + chr1_4:51022829-51022848 Msa0168440:CDS 45.0%
GAGGCATGATAATCTTGACC+AGG - chr1_4:51022837-51022856 Msa0168430:intron 45.0%
! TACCATCTGAGATAGATGCC+TGG + chr1_4:51022858-51022877 Msa0168440:CDS 45.0%
TGCTTATGCAAGTTTGGCAC+AGG - chr1_4:51023186-51023205 Msa0168430:intron 45.0%
TGAACCATTCTTTACGGCAG+GGG + chr1_4:51023212-51023231 Msa0168440:intron 45.0%
GATGAACCATTCTTTACGGC+AGG + chr1_4:51023214-51023233 Msa0168440:intron 45.0%
! GGCAAATAGCACTGAAGTTG+AGG - chr1_4:51023234-51023253 Msa0168430:intron 45.0%
ACTGGACTCTTACCAAATCG+CGG - chr1_4:51023307-51023326 Msa0168430:intron 45.0%
!! AGAAGCAATTTTGGAGGCAG+AGG - chr1_4:51023964-51023983 Msa0168430:intron 45.0%
CTGTCCTGAAGAACAAGAAC+TGG + chr1_4:51024203-51024222 None:intergenic 45.0%
!! TTTATATATAAAATAAATAG+GGG + chr1_4:51020752-51020771 None:intergenic 5.0%
!!! GTTTTTTTTTTTAAAAAAAA+TGG + chr1_4:51022688-51022707 Msa0168440:CDS 5.0%
ACGCACGTCTGATTCTTCGT+CGG - chr1_4:51019176-51019195 Msa0168430:intron 50.0%
CTACCACCAGTGATCTTCTC+CGG - chr1_4:51019372-51019391 Msa0168430:intron 50.0%
GAAGTGAGAGAGACAGAGAG+TGG - chr1_4:51019931-51019950 Msa0168430:intron 50.0%
! TAGGTTTAGTGGGCAACAGG+TGG - chr1_4:51020127-51020146 Msa0168430:intron 50.0%
GGTGCATTCAGAGACTTAGC+CGG - chr1_4:51020420-51020439 Msa0168430:intron 50.0%
TCAGAGACTTAGCCGGTCAA+TGG - chr1_4:51020427-51020446 Msa0168430:intron 50.0%
! TATGCGACTAGCCAGTGTCA+CGG - chr1_4:51021029-51021048 Msa0168430:intron 50.0%
CTAAGACTTTCCTCTGTGCC+CGG + chr1_4:51021090-51021109 None:intergenic 50.0%
GTATCAGTTACGGTGTAGGC+AGG - chr1_4:51021110-51021129 Msa0168430:intron 50.0%
GCCACATGTTACAAAGAGGG+AGG + chr1_4:51021525-51021544 None:intergenic 50.0%
CTACTGCTGCTGTGATTGGT+TGG - chr1_4:51022077-51022096 Msa0168430:intron 50.0%
TGATATCCAGAACAGCAGGG+AGG - chr1_4:51022205-51022224 Msa0168430:intron 50.0%
GGATATGTACAATTGGCCCG+TGG - chr1_4:51022246-51022265 Msa0168430:intron 50.0%
GCAGCGATCTCAAGTTAACC+AGG - chr1_4:51022287-51022306 Msa0168430:intron 50.0%
!! TCGTAGAAAGGGAGAGTACC+TGG + chr1_4:51022308-51022327 None:intergenic 50.0%
GGAAACAATGGCACAGCTAG+AGG - chr1_4:51022759-51022778 Msa0168430:intron 50.0%
GACCAGGCATCTATCTCAGA+TGG - chr1_4:51022853-51022872 Msa0168430:intron 50.0%
CTGGACTCTTACCAAATCGC+GGG - chr1_4:51023308-51023327 Msa0168430:intron 50.0%
TGGACTCTTACCAAATCGCG+GGG - chr1_4:51023309-51023328 Msa0168430:intron 50.0%
TATTCGACTCTCCTCCACGG+TGG - chr1_4:51018522-51018541 Msa0168430:intron 55.0%
AAGGAATGCCAGTTCCACCG+TGG + chr1_4:51018539-51018558 None:intergenic 55.0%
CAAACTCTGCTTCACCGCCT+CGG - chr1_4:51018566-51018585 Msa0168430:intron 55.0%
CGTGGCTATTGTATCCGAGG+CGG + chr1_4:51018583-51018602 None:intergenic 55.0%
GACGAAGAATCAGACGTGCG+TGG + chr1_4:51019177-51019196 None:intergenic 55.0%
CTCGGCGTGTTTGGCGAAAA+TGG + chr1_4:51019307-51019326 None:intergenic 55.0%
TCTGCACCGGAGAAGATCAC+TGG + chr1_4:51019381-51019400 None:intergenic 55.0%
! CGGTGTTGAACCGGTTAAGC+CGG + chr1_4:51019463-51019482 None:intergenic 55.0%
! CGGCTTAACCGGTTCAACAC+CGG - chr1_4:51019461-51019480 Msa0168430:intron 55.0%
! GGAGAGAACCGGTGTTGAAC+CGG + chr1_4:51019472-51019491 None:intergenic 55.0%
! TTAGTGGGCAACAGGTGGTC+CGG - chr1_4:51020132-51020151 Msa0168430:intron 55.0%
GCCAGTGTCACGGTAAAGTG+AGG - chr1_4:51021039-51021058 Msa0168430:intron 55.0%
GCCTCACTTTACCGTGACAC+TGG + chr1_4:51021043-51021062 None:intergenic 55.0%
AGACAATTCTCCGGGCACAG+AGG - chr1_4:51021077-51021096 Msa0168430:intron 55.0%
CGGGCACAGAGGAAAGTCTT+AGG - chr1_4:51021088-51021107 Msa0168430:intron 55.0%
TTACGGTGTAGGCAGGCAGT+GGG - chr1_4:51021117-51021136 Msa0168430:intron 55.0%
GGAGCTACTGCTGCTGTGAT+TGG - chr1_4:51022073-51022092 Msa0168430:intron 55.0%
GGACTCTTACCAAATCGCGG+GGG - chr1_4:51023310-51023329 Msa0168430:intron 55.0%
ACTCTCCTCCACGGTGGAAC+TGG - chr1_4:51018528-51018547 Msa0168430:intron 60.0%
GAATGCCAGTTCCACCGTGG+AGG + chr1_4:51018536-51018555 None:intergenic 60.0%
TTCGCCAAACACGCCGAGCT+CGG - chr1_4:51019309-51019328 Msa0168430:intron 60.0%
TGAACCGAGCTCGGCGTGTT+TGG + chr1_4:51019316-51019335 None:intergenic 60.0%
GCACCGGAGAAGATCACTGG+TGG + chr1_4:51019378-51019397 None:intergenic 60.0%
GTTACGGTGTAGGCAGGCAG+TGG - chr1_4:51021116-51021135 Msa0168430:intron 60.0%
TACGGTGTAGGCAGGCAGTG+GGG - chr1_4:51021118-51021137 Msa0168430:intron 60.0%
! AGCTAGCCTCCCTGCTGTTC+TGG + chr1_4:51022214-51022233 None:intergenic 60.0%
AGAACAGCAGGGAGGCTAGC+TGG - chr1_4:51022213-51022232 Msa0168430:intron 60.0%
ATCCTGGCCCATCAACTCGG+AGG - chr1_4:51022818-51022837 Msa0168430:intron 60.0%
CAGGCCCCTGCCGTAAAGAA+TGG - chr1_4:51023205-51023224 Msa0168430:intron 60.0%
! CAGCAGGGAGGCTAGCTGGA+CGG - chr1_4:51022217-51022236 Msa0168430:intron 65.0%
! AGCAGGGAGGCTAGCTGGAC+GGG - chr1_4:51022218-51022237 Msa0168430:intron 65.0%
! AGGCTAGCTGGACGGGCAGT+TGG - chr1_4:51022225-51022244 Msa0168430:intron 65.0%
!! TGCCTCCGAGTTGATGGGCC+AGG + chr1_4:51022823-51022842 Msa0168440:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51017737 51024330 51017737 ID=Msa0168430;Name=Msa0168430
chr1_4 mRNA 51017737 51024330 51017737 ID=Msa0168430-mRNA-1;Parent=Msa0168430;Name=Msa0168430-mRNA-1;_AED=0.20;_eAED=0.20;_QI=450|0.85|0.87|1|0.71|0.62|8|294|232
chr1_4 exon 51017737 51018134 51017737 ID=Msa0168430-mRNA-1:exon:15033;Parent=Msa0168430-mRNA-1
chr1_4 exon 51018709 51018931 51018709 ID=Msa0168430-mRNA-1:exon:15032;Parent=Msa0168430-mRNA-1
chr1_4 exon 51019019 51019074 51019019 ID=Msa0168430-mRNA-1:exon:15031;Parent=Msa0168430-mRNA-1
chr1_4 exon 51019193 51019325 51019193 ID=Msa0168430-mRNA-1:exon:15030;Parent=Msa0168430-mRNA-1
chr1_4 exon 51019759 51019880 51019759 ID=Msa0168430-mRNA-1:exon:15029;Parent=Msa0168430-mRNA-1
chr1_4 exon 51019973 51020135 51019973 ID=Msa0168430-mRNA-1:exon:15028;Parent=Msa0168430-mRNA-1
chr1_4 exon 51021585 51021646 51021585 ID=Msa0168430-mRNA-1:exon:15027;Parent=Msa0168430-mRNA-1
chr1_4 exon 51024045 51024330 51024045 ID=Msa0168430-mRNA-1:exon:15026;Parent=Msa0168430-mRNA-1
chr1_4 five_prime_UTR 51024045 51024330 51024045 ID=Msa0168430-mRNA-1:five_prime_utr;Parent=Msa0168430-mRNA-1
chr1_4 five_prime_UTR 51021585 51021646 51021585 ID=Msa0168430-mRNA-1:five_prime_utr;Parent=Msa0168430-mRNA-1
chr1_4 five_prime_UTR 51020034 51020135 51020034 ID=Msa0168430-mRNA-1:five_prime_utr;Parent=Msa0168430-mRNA-1
chr1_4 CDS 51019973 51020033 51019973 ID=Msa0168430-mRNA-1:cds;Parent=Msa0168430-mRNA-1
chr1_4 CDS 51019759 51019880 51019759 ID=Msa0168430-mRNA-1:cds;Parent=Msa0168430-mRNA-1
chr1_4 CDS 51019193 51019325 51019193 ID=Msa0168430-mRNA-1:cds;Parent=Msa0168430-mRNA-1
chr1_4 CDS 51019019 51019074 51019019 ID=Msa0168430-mRNA-1:cds;Parent=Msa0168430-mRNA-1
chr1_4 CDS 51018709 51018931 51018709 ID=Msa0168430-mRNA-1:cds;Parent=Msa0168430-mRNA-1
chr1_4 CDS 51018031 51018134 51018031 ID=Msa0168430-mRNA-1:cds;Parent=Msa0168430-mRNA-1
chr1_4 three_prime_UTR 51017737 51018030 51017737 ID=Msa0168430-mRNA-1:three_prime_utr;Parent=Msa0168430-mRNA-1
Gene Sequence

>Msa0168430

ATGCTGGGATTTTCATTTGGAGAAATATTTCTGTTGCTGGGAGCTACTGCTGCTGTGATTGGTCCAAAGGATTTGCCAATGATATCCAGAACAGCAGGGAGGCTAGCTGGACGGGCAGTTGGATATGTACAATTGGCCCGTGGACAGTTTGATTCTGTTATGCAGCGATCTCAAGTTAACCAGGTTCATAAGGAACTTCAGGAAACAATGGCACAGCTAGAGGCCATTCGTCATGAAATTGGAAGCATATCATTCATAAATCCTGGCCCATCAACTCGGAGGCATGATAATCTTGACCAGGCATCTATCTCAGATGACGACAGAAAACCTGAATATGCTGGGGTGAATAACTCAATATCCTCTCATACCAAGGATTCAACTTCATTGCCATCCAAATCATTAAATATGCAAAGTCAAGCAACTGCTTATGCAAGTTTGGCACAGGCCCCTGCCGTAAAGAATGGTTCATCGGCAAATAGCACTGAAGTTGAGGATGTTAAAGTTGGTCTGCAGCTTATTGTCATGCCAGTTTCTGCTGAAAATACTGGACTCTTACCAAATCGCGGGGGTAATAATAATTTTTGCTGTGTAGTTGGAGCTGATTTGAAAGGATCTGACATAGTTCAAGAAGCAATTTTGGAGGCAGAGGTAGCTCATAATGCAAAGGAATTCTTTTCACAGCCCCAAAATCAAATATGA
Protein sequence

>Msa0168430

MLGFSFGEIFLLLGATAAVIGPKDLPMISRTAGRLAGRAVGYVQLARGQFDSVMQRSQVNQVHKELQETMAQLEAIRHEIGSISFINPGPSTRRHDNLDQASISDDDRKPEYAGVNNSISSHTKDSTSLPSKSLNMQSQATAYASLAQAPAVKNGSSANSTEVEDVKVGLQLIVMPVSAENTGLLPNRGGNNNFCCVVGADLKGSDIVQEAILEAEVAHNAKEFFSQPQNQI*