Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588880 | XP_003604502.1 | 92.982 | 114 | 8 | 0 | 1 | 114 | 1 | 114 | 7.18e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055030 | Msa0588880 | 0.829440 | 5.141441e-55 | -8.615850e-47 |
| Msa0099350 | Msa0588880 | -0.837732 | 4.369917e-57 | -8.615850e-47 |
| Msa0099430 | Msa0588880 | -0.838959 | 2.108797e-57 | -8.615850e-47 |
| Msa0138840 | Msa0588880 | 0.807230 | 5.594640e-50 | -8.615850e-47 |
| Msa0138850 | Msa0588880 | 0.805320 | 1.412764e-49 | -8.615850e-47 |
| Msa0138870 | Msa0588880 | 0.821470 | 3.969150e-53 | -8.615850e-47 |
| Msa0146210 | Msa0588880 | 0.807997 | 3.845942e-50 | -8.615850e-47 |
| Msa0148000 | Msa0588880 | -0.841894 | 3.602562e-58 | -8.615850e-47 |
| Msa0173120 | Msa0588880 | 0.806795 | 6.916887e-50 | -8.615850e-47 |
| Msa0186030 | Msa0588880 | 0.814570 | 1.440696e-51 | -8.615850e-47 |
| Msa0224210 | Msa0588880 | 0.824403 | 8.223800e-54 | -8.615850e-47 |
| Msa0390790 | Msa0588880 | 0.827426 | 1.574825e-54 | -8.615850e-47 |
| Msa0242720 | Msa0588880 | 0.817402 | 3.359265e-52 | -8.615850e-47 |
| Msa0320160 | Msa0588880 | 0.802323 | 5.924649e-49 | -8.615850e-47 |
| Msa0322200 | Msa0588880 | 0.810459 | 1.140438e-50 | -8.615850e-47 |
| Msa0336680 | Msa0588880 | 0.800993 | 1.110319e-48 | -8.615850e-47 |
| Msa0537210 | Msa0588880 | 0.822986 | 1.766189e-53 | -8.615850e-47 |
| Msa0546880 | Msa0588880 | 0.991747 | 2.554312e-189 | -8.615850e-47 |
| Msa0588880 | Msa0593600 | 0.832795 | 7.709363e-56 | -8.615850e-47 |
| Msa0588880 | Msa0633630 | 0.829830 | 4.133123e-55 | -8.615850e-47 |
| Msa0588880 | Msa0672090 | 0.823755 | 1.167439e-53 | -8.615850e-47 |
| Msa0588880 | Msa0791780 | -0.819237 | 1.290669e-52 | -8.615850e-47 |
| Msa0588880 | Msa1018210 | -0.801694 | 7.980749e-49 | -8.615850e-47 |
| Msa0588880 | Msa1087630 | 0.807215 | 5.635883e-50 | -8.615850e-47 |
| Msa0588880 | Msa1165660 | 0.803321 | 3.686526e-49 | -8.615850e-47 |
| Msa0588880 | Msa1179340 | 0.841891 | 3.609320e-58 | -8.615850e-47 |
| Msa0588880 | Msa1186670 | 0.812075 | 5.087439e-51 | -8.615850e-47 |
| Msa0588880 | Msa1218190 | 0.821106 | 4.817027e-53 | -8.615850e-47 |
| Msa0588880 | Msa1233090 | 0.836615 | 8.435511e-57 | -8.615850e-47 |
| Msa0588880 | Msa1275220 | 0.839782 | 1.289210e-57 | -8.615850e-47 |
| Msa0588880 | Msa1313720 | 0.820928 | 5.291534e-53 | -8.615850e-47 |
| Msa0588880 | Msa1366470 | 0.800277 | 1.554537e-48 | -8.615850e-47 |
| Msa0588880 | Msa1373990 | 0.807034 | 6.154490e-50 | -8.615850e-47 |
| Msa0588880 | Msa1402160 | 0.813231 | 2.842539e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588880 | MtrunA17_Chr4g0005151 | 92.982 | 114 | 8 | 0 | 1 | 114 | 1 | 114 | 6.61e-75 | 217 |
| Msa0588880 | MtrunA17_Chr7g0243451 | 80.392 | 102 | 20 | 0 | 1 | 102 | 1 | 102 | 6.38e-58 | 174 |
| Msa0588880 | MtrunA17_Chr4g0005161 | 56.863 | 102 | 44 | 0 | 1 | 102 | 1 | 102 | 2.16e-39 | 127 |
| Msa0588880 | MtrunA17_Chr7g0238011 | 44.660 | 103 | 57 | 0 | 1 | 103 | 1 | 103 | 1.22e-29 | 103 |
| Msa0588880 | MtrunA17_Chr4g0071771 | 46.078 | 102 | 55 | 0 | 1 | 102 | 1 | 102 | 2.73e-26 | 94.4 |
| Msa0588880 | MtrunA17_Chr4g0071761 | 41.748 | 103 | 60 | 0 | 1 | 103 | 1 | 103 | 1.02e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588880 | AT3G51660.1 | 59.223 | 103 | 42 | 0 | 1 | 103 | 1 | 103 | 1.60e-41 | 133 |
| Msa0588880 | AT5G01650.2 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 4.26e-40 | 130 |
| Msa0588880 | AT5G01650.3 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 4.26e-40 | 130 |
| Msa0588880 | AT5G01650.4 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 7.40e-40 | 129 |
| Msa0588880 | AT5G01650.1 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 1.12e-39 | 128 |
| Msa0588880 | AT5G57170.2 | 46.078 | 102 | 55 | 0 | 1 | 102 | 1 | 102 | 2.61e-26 | 94.7 |
| Msa0588880 | AT5G57170.1 | 46.078 | 102 | 55 | 0 | 1 | 102 | 1 | 102 | 5.63e-26 | 94.0 |
Find 23 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACCAACGTTAATTTAGA+TGG | 0.290910 | 4_2:+11351729 | Msa0588880:CDS |
| CAGTACCATTGGCACAATAT+TGG | 0.301904 | 4_2:+11353215 | Msa0588880:CDS |
| ACTGCTGTTTCCACAATCAT+AGG | 0.405897 | 4_2:+11351786 | Msa0588880:CDS |
| TCAAAAGCATCACTACAGTT+TGG | 0.409372 | 4_2:-11353316 | None:intergenic |
| TCTCAAAGTCTTTGACATCA+TGG | 0.431478 | 4_2:+11353272 | Msa0588880:CDS |
| GAAGAGTGACATACCTTGTC+GGG | 0.442658 | 4_2:-11351813 | None:intergenic |
| GTTCTAGCTTGATCAAAGAT+AGG | 0.446427 | 4_2:-11351765 | None:intergenic |
| GTTTGTGATGGTTCTATTGA+AGG | 0.461686 | 4_2:+11353092 | Msa0588880:intron |
| TGTTCTTGGTATAGAGAGGT+TGG | 0.461721 | 4_2:-11353241 | None:intergenic |
| AACAAAGAACCAGCTGCATA+TGG | 0.465591 | 4_2:+11353141 | Msa0588880:CDS |
| TTTGTGATGGTTCTATTGAA+GGG | 0.504158 | 4_2:+11353093 | Msa0588880:CDS |
| TAACGTTGGTAGAGATGTAA+AGG | 0.513197 | 4_2:-11351719 | None:intergenic |
| ATATGGTGAACTAGTTTCAA+TGG | 0.521191 | 4_2:+11353158 | Msa0588880:CDS |
| AAGAATCTAATCAGTACCAT+TGG | 0.529298 | 4_2:+11353204 | Msa0588880:CDS |
| GGATTCCAATATTGTGCCAA+TGG | 0.539625 | 4_2:-11353220 | None:intergenic |
| ATCTTGTTCTTGGTATAGAG+AGG | 0.571975 | 4_2:-11353245 | None:intergenic |
| ACTAGTTCACCATATGCAGC+TGG | 0.580662 | 4_2:-11353150 | None:intergenic |
| TTGTGATGGTTCTATTGAAG+GGG | 0.584227 | 4_2:+11353094 | Msa0588880:CDS |
| TATGGTGAACTAGTTTCAAT+GGG | 0.596371 | 4_2:+11353159 | Msa0588880:CDS |
| AGAAGAGTGACATACCTTGT+CGG | 0.618285 | 4_2:-11351814 | None:intergenic |
| GGTGAACTAGTTTCAATGGG+TGG | 0.635436 | 4_2:+11353162 | Msa0588880:CDS |
| TTGGTAGAGATGTAAAGGCA+AGG | 0.650566 | 4_2:-11351714 | None:intergenic |
| AATCATAGGAAAACCCGACA+AGG | 0.692062 | 4_2:+11351800 | Msa0588880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAACTAATTTCAAT+GGG | + | chr4_2:11352318-11352337 | Msa0588880:intron | 10.0% |
| !! | TTAAATAAACTAATTTCAAT+GGG | + | chr4_2:11352318-11352337 | Msa0588880:intron | 10.0% |
| !!! | CACAAAATTAATATGAATTT+TGG | + | chr4_2:11351909-11351928 | Msa0588880:intron | 15.0% |
| !!! | ATTTATTTCTCAAAATCAAA+TGG | + | chr4_2:11352219-11352238 | Msa0588880:intron | 15.0% |
| !! | GTTAAATAAACTAATTTCAA+TGG | + | chr4_2:11352317-11352336 | Msa0588880:intron | 15.0% |
| !! | AAATAAAAAAGAATTTCACT+TGG | - | chr4_2:11352653-11352672 | None:intergenic | 15.0% |
| !!! | CACAAAATTAATATGAATTT+TGG | + | chr4_2:11351909-11351928 | Msa0588880:intron | 15.0% |
| !!! | ATTTATTTCTCAAAATCAAA+TGG | + | chr4_2:11352219-11352238 | Msa0588880:intron | 15.0% |
| !! | GTTAAATAAACTAATTTCAA+TGG | + | chr4_2:11352317-11352336 | Msa0588880:intron | 15.0% |
| !! | AAATAAAAAAGAATTTCACT+TGG | - | chr4_2:11352653-11352672 | None:intergenic | 15.0% |
| !!! | ATTTTGGATTTTGTTGATTA+TGG | + | chr4_2:11351925-11351944 | Msa0588880:intron | 20.0% |
| !!! | TTGTTATTTTCAAACGATAT+TGG | - | chr4_2:11353126-11353145 | None:intergenic | 20.0% |
| !!! | ATTTTGGATTTTGTTGATTA+TGG | + | chr4_2:11351925-11351944 | Msa0588880:intron | 20.0% |
| !!! | TTGTTATTTTCAAACGATAT+TGG | - | chr4_2:11353126-11353145 | None:intergenic | 20.0% |
| !! | TTTTCCATCTAAATTAACGT+TGG | - | chr4_2:11351736-11351755 | None:intergenic | 25.0% |
| !! | TGTTTTACAAATAAAGCTTG+TGG | + | chr4_2:11351846-11351865 | Msa0588880:intron | 25.0% |
| !! | ACTGATTCATAATGTTTGAT+TGG | + | chr4_2:11351994-11352013 | Msa0588880:intron | 25.0% |
| ! | AAGTAAGTAAATAGCCAAAT+TGG | + | chr4_2:11352764-11352783 | Msa0588880:intron | 25.0% |
| ! | CCTCTAATGATAAAAATTGA+TGG | - | chr4_2:11352883-11352902 | None:intergenic | 25.0% |
| !! | CCATCAATTTTTATCATTAG+AGG | + | chr4_2:11352880-11352899 | Msa0588880:intron | 25.0% |
| ! | ACATACATAGTGATATTTCA+AGG | + | chr4_2:11352913-11352932 | Msa0588880:intron | 25.0% |
| !!! | ATACCATGCAATTTAGTTTT+GGG | - | chr4_2:11352964-11352983 | None:intergenic | 25.0% |
| !!! | TATACCATGCAATTTAGTTT+TGG | - | chr4_2:11352965-11352984 | None:intergenic | 25.0% |
| ! | GCATGGTATAAAAATTTATG+AGG | + | chr4_2:11352975-11352994 | Msa0588880:intron | 25.0% |
| ! | TTGAGAAAAAATCTTGTTCT+TGG | - | chr4_2:11353258-11353277 | None:intergenic | 25.0% |
| !! | TTTTCCATCTAAATTAACGT+TGG | - | chr4_2:11351736-11351755 | None:intergenic | 25.0% |
| !! | TGTTTTACAAATAAAGCTTG+TGG | + | chr4_2:11351846-11351865 | Msa0588880:intron | 25.0% |
| !! | ACTGATTCATAATGTTTGAT+TGG | + | chr4_2:11351994-11352013 | Msa0588880:intron | 25.0% |
| ! | AAGTAAGTAAATAGCCAAAT+TGG | + | chr4_2:11352764-11352783 | Msa0588880:intron | 25.0% |
| ! | CCTCTAATGATAAAAATTGA+TGG | - | chr4_2:11352883-11352902 | None:intergenic | 25.0% |
| !! | CCATCAATTTTTATCATTAG+AGG | + | chr4_2:11352880-11352899 | Msa0588880:intron | 25.0% |
| ! | ACATACATAGTGATATTTCA+AGG | + | chr4_2:11352913-11352932 | Msa0588880:intron | 25.0% |
| !!! | ATACCATGCAATTTAGTTTT+GGG | - | chr4_2:11352964-11352983 | None:intergenic | 25.0% |
| !!! | TATACCATGCAATTTAGTTT+TGG | - | chr4_2:11352965-11352984 | None:intergenic | 25.0% |
| ! | GCATGGTATAAAAATTTATG+AGG | + | chr4_2:11352975-11352994 | Msa0588880:intron | 25.0% |
| ! | TTGAGAAAAAATCTTGTTCT+TGG | - | chr4_2:11353258-11353277 | None:intergenic | 25.0% |
| TCTACCAACGTTAATTTAGA+TGG | + | chr4_2:11351729-11351748 | Msa0588880:CDS | 30.0% | |
| CAAATAAAGCTTGTGGAATT+TGG | + | chr4_2:11351853-11351872 | Msa0588880:intron | 30.0% | |
| GTTGTGTGAAAATCCTTTAA+GGG | + | chr4_2:11351882-11351901 | Msa0588880:intron | 30.0% | |
| ! | AATTTTGTGTCAACCCTTAA+AGG | - | chr4_2:11351898-11351917 | None:intergenic | 30.0% |
| !! | CATAATGTTTGATTGGTTTC+TGG | + | chr4_2:11352001-11352020 | Msa0588880:intron | 30.0% |
| !! | TGATTGGTTTCTGGTATAAT+TGG | + | chr4_2:11352010-11352029 | Msa0588880:intron | 30.0% |
| ! | TGACAAGTTTTCTACAGAAA+AGG | - | chr4_2:11352149-11352168 | None:intergenic | 30.0% |
| ! | TGCTCTTTGATGCAATTTTT+AGG | + | chr4_2:11352426-11352445 | Msa0588880:intron | 30.0% |
| ! | GCTCTTTGATGCAATTTTTA+GGG | + | chr4_2:11352427-11352446 | Msa0588880:intron | 30.0% |
| !!! | CAATTTAGTTTTGGGTTATG+TGG | - | chr4_2:11352956-11352975 | None:intergenic | 30.0% |
| TAACCCAAAACTAAATTGCA+TGG | + | chr4_2:11352958-11352977 | Msa0588880:intron | 30.0% | |
| ! | GTAATTTTTGCAGTTTGTGA+TGG | + | chr4_2:11353080-11353099 | Msa0588880:intron | 30.0% |
| ! | TTTGTGATGGTTCTATTGAA+GGG | + | chr4_2:11353093-11353112 | Msa0588880:CDS | 30.0% |
| ! | ATATGGTGAACTAGTTTCAA+TGG | + | chr4_2:11353158-11353177 | Msa0588880:CDS | 30.0% |
| ! | TATGGTGAACTAGTTTCAAT+GGG | + | chr4_2:11353159-11353178 | Msa0588880:CDS | 30.0% |
| AAGAATCTAATCAGTACCAT+TGG | + | chr4_2:11353204-11353223 | Msa0588880:CDS | 30.0% | |
| TCTACCAACGTTAATTTAGA+TGG | + | chr4_2:11351729-11351748 | Msa0588880:CDS | 30.0% | |
| CAAATAAAGCTTGTGGAATT+TGG | + | chr4_2:11351853-11351872 | Msa0588880:intron | 30.0% | |
| GTTGTGTGAAAATCCTTTAA+GGG | + | chr4_2:11351882-11351901 | Msa0588880:intron | 30.0% | |
| ! | AATTTTGTGTCAACCCTTAA+AGG | - | chr4_2:11351898-11351917 | None:intergenic | 30.0% |
| !! | CATAATGTTTGATTGGTTTC+TGG | + | chr4_2:11352001-11352020 | Msa0588880:intron | 30.0% |
| !! | TGATTGGTTTCTGGTATAAT+TGG | + | chr4_2:11352010-11352029 | Msa0588880:intron | 30.0% |
| ! | TGACAAGTTTTCTACAGAAA+AGG | - | chr4_2:11352149-11352168 | None:intergenic | 30.0% |
| ! | TGCTCTTTGATGCAATTTTT+AGG | + | chr4_2:11352426-11352445 | Msa0588880:intron | 30.0% |
| ! | GCTCTTTGATGCAATTTTTA+GGG | + | chr4_2:11352427-11352446 | Msa0588880:intron | 30.0% |
| !!! | CAATTTAGTTTTGGGTTATG+TGG | - | chr4_2:11352956-11352975 | None:intergenic | 30.0% |
| TAACCCAAAACTAAATTGCA+TGG | + | chr4_2:11352958-11352977 | Msa0588880:intron | 30.0% | |
| ! | GTAATTTTTGCAGTTTGTGA+TGG | + | chr4_2:11353080-11353099 | Msa0588880:intron | 30.0% |
| ! | TTTGTGATGGTTCTATTGAA+GGG | + | chr4_2:11353093-11353112 | Msa0588880:CDS | 30.0% |
| ! | ATATGGTGAACTAGTTTCAA+TGG | + | chr4_2:11353158-11353177 | Msa0588880:CDS | 30.0% |
| ! | TATGGTGAACTAGTTTCAAT+GGG | + | chr4_2:11353159-11353178 | Msa0588880:CDS | 30.0% |
| AAGAATCTAATCAGTACCAT+TGG | + | chr4_2:11353204-11353223 | Msa0588880:CDS | 30.0% | |
| ! | TAACGTTGGTAGAGATGTAA+AGG | - | chr4_2:11351722-11351741 | None:intergenic | 35.0% |
| !! | GTTCTAGCTTGATCAAAGAT+AGG | - | chr4_2:11351768-11351787 | None:intergenic | 35.0% |
| ! | AGCTTGTGGAATTTGGTTTA+AGG | + | chr4_2:11351860-11351879 | Msa0588880:intron | 35.0% |
| GGTTGTGTGAAAATCCTTTA+AGG | + | chr4_2:11351881-11351900 | Msa0588880:intron | 35.0% | |
| AGAAAAGGCAGAGAGTAAAA+GGG | - | chr4_2:11352134-11352153 | None:intergenic | 35.0% | |
| AAATAAGACAGCAGACTAGT+TGG | + | chr4_2:11352365-11352384 | Msa0588880:intron | 35.0% | |
| CTTGGAACAAAGTACAACAT+GGG | - | chr4_2:11352635-11352654 | None:intergenic | 35.0% | |
| ACTTGGAACAAAGTACAACA+TGG | - | chr4_2:11352636-11352655 | None:intergenic | 35.0% | |
| TCTTTGTGCGCAAAGTTAAT+AGG | - | chr4_2:11352735-11352754 | None:intergenic | 35.0% | |
| ! | TTTGCGCACAAAGAATTTTG+CGG | + | chr4_2:11352741-11352760 | Msa0588880:intron | 35.0% |
| !!! | CACAGTTTTGAGTACCAATT+TGG | - | chr4_2:11352781-11352800 | None:intergenic | 35.0% |
| ! | GTTTGTGATGGTTCTATTGA+AGG | + | chr4_2:11353092-11353111 | Msa0588880:intron | 35.0% |
| ! | TTGTGATGGTTCTATTGAAG+GGG | + | chr4_2:11353094-11353113 | Msa0588880:CDS | 35.0% |
| ATCTTGTTCTTGGTATAGAG+AGG | - | chr4_2:11353248-11353267 | None:intergenic | 35.0% | |
| TCTCAAAGTCTTTGACATCA+TGG | + | chr4_2:11353272-11353291 | Msa0588880:CDS | 35.0% | |
| ! | TAACGTTGGTAGAGATGTAA+AGG | - | chr4_2:11351722-11351741 | None:intergenic | 35.0% |
| !! | GTTCTAGCTTGATCAAAGAT+AGG | - | chr4_2:11351768-11351787 | None:intergenic | 35.0% |
| ! | AGCTTGTGGAATTTGGTTTA+AGG | + | chr4_2:11351860-11351879 | Msa0588880:intron | 35.0% |
| GGTTGTGTGAAAATCCTTTA+AGG | + | chr4_2:11351881-11351900 | Msa0588880:intron | 35.0% | |
| AGAAAAGGCAGAGAGTAAAA+GGG | - | chr4_2:11352134-11352153 | None:intergenic | 35.0% | |
| AAATAAGACAGCAGACTAGT+TGG | + | chr4_2:11352365-11352384 | Msa0588880:intron | 35.0% | |
| CTTGGAACAAAGTACAACAT+GGG | - | chr4_2:11352635-11352654 | None:intergenic | 35.0% | |
| ACTTGGAACAAAGTACAACA+TGG | - | chr4_2:11352636-11352655 | None:intergenic | 35.0% | |
| TCTTTGTGCGCAAAGTTAAT+AGG | - | chr4_2:11352735-11352754 | None:intergenic | 35.0% | |
| ! | TTTGCGCACAAAGAATTTTG+CGG | + | chr4_2:11352741-11352760 | Msa0588880:intron | 35.0% |
| !!! | CACAGTTTTGAGTACCAATT+TGG | - | chr4_2:11352781-11352800 | None:intergenic | 35.0% |
| ! | GTTTGTGATGGTTCTATTGA+AGG | + | chr4_2:11353092-11353111 | Msa0588880:intron | 35.0% |
| ! | TTGTGATGGTTCTATTGAAG+GGG | + | chr4_2:11353094-11353113 | Msa0588880:CDS | 35.0% |
| ATCTTGTTCTTGGTATAGAG+AGG | - | chr4_2:11353248-11353267 | None:intergenic | 35.0% | |
| TCTCAAAGTCTTTGACATCA+TGG | + | chr4_2:11353272-11353291 | Msa0588880:CDS | 35.0% | |
| TTGGTAGAGATGTAAAGGCA+AGG | - | chr4_2:11351717-11351736 | None:intergenic | 40.0% | |
| !! | ACTGCTGTTTCCACAATCAT+AGG | + | chr4_2:11351786-11351805 | Msa0588880:CDS | 40.0% |
| AATCATAGGAAAACCCGACA+AGG | + | chr4_2:11351800-11351819 | Msa0588880:CDS | 40.0% | |
| AGAAGAGTGACATACCTTGT+CGG | - | chr4_2:11351817-11351836 | None:intergenic | 40.0% | |
| GAAGTGTACACTTCTCTGTT+TGG | + | chr4_2:11352079-11352098 | Msa0588880:intron | 40.0% | |
| CAGAAAAGGCAGAGAGTAAA+AGG | - | chr4_2:11352135-11352154 | None:intergenic | 40.0% | |
| GATAACTTCTATGTGCTGGA+CGG | - | chr4_2:11352690-11352709 | None:intergenic | 40.0% | |
| CCATGATAACTTCTATGTGC+TGG | - | chr4_2:11352694-11352713 | None:intergenic | 40.0% | |
| CCAGCACATAGAAGTTATCA+TGG | + | chr4_2:11352691-11352710 | Msa0588880:intron | 40.0% | |
| ! | CGATGTGATAGTCTTAGAGT+TGG | + | chr4_2:11353025-11353044 | Msa0588880:intron | 40.0% |
| AACAAAGAACCAGCTGCATA+TGG | + | chr4_2:11353141-11353160 | Msa0588880:CDS | 40.0% | |
| CAGTACCATTGGCACAATAT+TGG | + | chr4_2:11353215-11353234 | Msa0588880:CDS | 40.0% | |
| GGATTCCAATATTGTGCCAA+TGG | - | chr4_2:11353223-11353242 | None:intergenic | 40.0% | |
| TGTTCTTGGTATAGAGAGGT+TGG | - | chr4_2:11353244-11353263 | None:intergenic | 40.0% | |
| TTGGTAGAGATGTAAAGGCA+AGG | - | chr4_2:11351717-11351736 | None:intergenic | 40.0% | |
| !! | ACTGCTGTTTCCACAATCAT+AGG | + | chr4_2:11351786-11351805 | Msa0588880:CDS | 40.0% |
| AATCATAGGAAAACCCGACA+AGG | + | chr4_2:11351800-11351819 | Msa0588880:CDS | 40.0% | |
| AGAAGAGTGACATACCTTGT+CGG | - | chr4_2:11351817-11351836 | None:intergenic | 40.0% | |
| GAAGTGTACACTTCTCTGTT+TGG | + | chr4_2:11352079-11352098 | Msa0588880:intron | 40.0% | |
| CAGAAAAGGCAGAGAGTAAA+AGG | - | chr4_2:11352135-11352154 | None:intergenic | 40.0% | |
| GATAACTTCTATGTGCTGGA+CGG | - | chr4_2:11352690-11352709 | None:intergenic | 40.0% | |
| CCATGATAACTTCTATGTGC+TGG | - | chr4_2:11352694-11352713 | None:intergenic | 40.0% | |
| CCAGCACATAGAAGTTATCA+TGG | + | chr4_2:11352691-11352710 | Msa0588880:intron | 40.0% | |
| ! | CGATGTGATAGTCTTAGAGT+TGG | + | chr4_2:11353025-11353044 | Msa0588880:intron | 40.0% |
| AACAAAGAACCAGCTGCATA+TGG | + | chr4_2:11353141-11353160 | Msa0588880:CDS | 40.0% | |
| CAGTACCATTGGCACAATAT+TGG | + | chr4_2:11353215-11353234 | Msa0588880:CDS | 40.0% | |
| GGATTCCAATATTGTGCCAA+TGG | - | chr4_2:11353223-11353242 | None:intergenic | 40.0% | |
| TGTTCTTGGTATAGAGAGGT+TGG | - | chr4_2:11353244-11353263 | None:intergenic | 40.0% | |
| ! | GTCGGGTTTTCCTATGATTG+TGG | - | chr4_2:11351799-11351818 | None:intergenic | 45.0% |
| GAAGAGTGACATACCTTGTC+GGG | - | chr4_2:11351816-11351835 | None:intergenic | 45.0% | |
| ! | TAAGACAGCAGACTAGTTGG+AGG | + | chr4_2:11352368-11352387 | Msa0588880:intron | 45.0% |
| ! | TTGGAGGCTTTTCTGTCTGT+AGG | + | chr4_2:11352384-11352403 | Msa0588880:intron | 45.0% |
| GGGTTATGTGGCATTGTTGT+AGG | - | chr4_2:11352944-11352963 | None:intergenic | 45.0% | |
| ACTAGTTCACCATATGCAGC+TGG | - | chr4_2:11353153-11353172 | None:intergenic | 45.0% | |
| ! | GGTGAACTAGTTTCAATGGG+TGG | + | chr4_2:11353162-11353181 | Msa0588880:CDS | 45.0% |
| ! | GTCGGGTTTTCCTATGATTG+TGG | - | chr4_2:11351799-11351818 | None:intergenic | 45.0% |
| GAAGAGTGACATACCTTGTC+GGG | - | chr4_2:11351816-11351835 | None:intergenic | 45.0% | |
| ! | TAAGACAGCAGACTAGTTGG+AGG | + | chr4_2:11352368-11352387 | Msa0588880:intron | 45.0% |
| ! | TTGGAGGCTTTTCTGTCTGT+AGG | + | chr4_2:11352384-11352403 | Msa0588880:intron | 45.0% |
| GGGTTATGTGGCATTGTTGT+AGG | - | chr4_2:11352944-11352963 | None:intergenic | 45.0% | |
| ACTAGTTCACCATATGCAGC+TGG | - | chr4_2:11353153-11353172 | None:intergenic | 45.0% | |
| ! | GGTGAACTAGTTTCAATGGG+TGG | + | chr4_2:11353162-11353181 | Msa0588880:CDS | 45.0% |
| !!! | TTTTTATTGTATAAATATAA+TGG | + | chr4_2:11352292-11352311 | Msa0588880:intron | 5.0% |
| !!! | TTTTTATTGTATAAATATAA+TGG | + | chr4_2:11352292-11352311 | Msa0588880:intron | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 11351711 | 11353326 | 11351711 | ID=Msa0588880;Name=Msa0588880 |
| chr4_2 | mRNA | 11351711 | 11353326 | 11351711 | ID=Msa0588880-mRNA-1;Parent=Msa0588880;Name=Msa0588880-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0|1|1|1|2|0|114 |
| chr4_2 | exon | 11351711 | 11351821 | 11351711 | ID=Msa0588880-mRNA-1:exon:3289;Parent=Msa0588880-mRNA-1 |
| chr4_2 | exon | 11353093 | 11353326 | 11353093 | ID=Msa0588880-mRNA-1:exon:3290;Parent=Msa0588880-mRNA-1 |
| chr4_2 | CDS | 11351711 | 11351821 | 11351711 | ID=Msa0588880-mRNA-1:cds;Parent=Msa0588880-mRNA-1 |
| chr4_2 | CDS | 11353093 | 11353326 | 11353093 | ID=Msa0588880-mRNA-1:cds;Parent=Msa0588880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
