Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546880 | XP_003604502.1 | 92.982 | 114 | 8 | 0 | 1 | 114 | 1 | 114 | 7.18e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546880 | G7JJG3 | 92.982 | 114 | 8 | 0 | 1 | 114 | 1 | 114 | 3.43e-71 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055030 | Msa0546880 | 0.825710 | 4.041100e-54 | -8.615850e-47 |
| Msa0099350 | Msa0546880 | -0.830535 | 2.780396e-55 | -8.615850e-47 |
| Msa0099430 | Msa0546880 | -0.831645 | 1.484561e-55 | -8.615850e-47 |
| Msa0138830 | Msa0546880 | 0.801607 | 8.314913e-49 | -8.615850e-47 |
| Msa0138840 | Msa0546880 | 0.808014 | 3.813827e-50 | -8.615850e-47 |
| Msa0138850 | Msa0546880 | 0.806356 | 8.560448e-50 | -8.615850e-47 |
| Msa0138870 | Msa0546880 | 0.824204 | 9.163544e-54 | -8.615850e-47 |
| Msa0146210 | Msa0546880 | 0.802320 | 5.933991e-49 | -8.615850e-47 |
| Msa0148000 | Msa0546880 | -0.837473 | 5.091047e-57 | -8.615850e-47 |
| Msa0186030 | Msa0546880 | 0.804762 | 1.848852e-49 | -8.615850e-47 |
| Msa0224210 | Msa0546880 | 0.819647 | 1.040835e-52 | -8.615850e-47 |
| Msa0390790 | Msa0546880 | 0.823453 | 1.374324e-53 | -8.615850e-47 |
| Msa0242720 | Msa0546880 | 0.819943 | 8.903648e-53 | -8.615850e-47 |
| Msa0320160 | Msa0546880 | 0.812044 | 5.168102e-51 | -8.615850e-47 |
| Msa0322200 | Msa0546880 | 0.809618 | 1.730970e-50 | -8.615850e-47 |
| Msa0537210 | Msa0546880 | 0.824423 | 8.138924e-54 | -8.615850e-47 |
| Msa0546880 | Msa0588880 | 0.991747 | 2.554312e-189 | -8.615850e-47 |
| Msa0546880 | Msa0593600 | 0.832233 | 1.062509e-55 | -8.615850e-47 |
| Msa0546880 | Msa0633630 | 0.829186 | 5.927646e-55 | -8.615850e-47 |
| Msa0546880 | Msa0672090 | 0.822234 | 2.642015e-53 | -8.615850e-47 |
| Msa0546880 | Msa0791780 | -0.813301 | 2.743600e-51 | -8.615850e-47 |
| Msa0546880 | Msa1165660 | 0.802609 | 5.172000e-49 | -8.615850e-47 |
| Msa0546880 | Msa1179340 | 0.843289 | 1.535963e-58 | -8.615850e-47 |
| Msa0546880 | Msa1186670 | 0.810380 | 1.186264e-50 | -8.615850e-47 |
| Msa0546880 | Msa1218190 | 0.822820 | 1.930091e-53 | -8.615850e-47 |
| Msa0546880 | Msa1233090 | 0.829957 | 3.847721e-55 | -8.615850e-47 |
| Msa0546880 | Msa1275220 | 0.841375 | 4.935499e-58 | -8.615850e-47 |
| Msa0546880 | Msa1313720 | 0.819972 | 8.771660e-53 | -8.615850e-47 |
| Msa0546880 | Msa1366470 | 0.800028 | 1.746564e-48 | -8.615850e-47 |
| Msa0546880 | Msa1373990 | 0.801356 | 9.361049e-49 | -8.615850e-47 |
| Msa0546880 | Msa1402160 | 0.803271 | 3.774313e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546880 | MtrunA17_Chr4g0005151 | 92.982 | 114 | 8 | 0 | 1 | 114 | 1 | 114 | 6.61e-75 | 217 |
| Msa0546880 | MtrunA17_Chr7g0243451 | 80.392 | 102 | 20 | 0 | 1 | 102 | 1 | 102 | 6.38e-58 | 174 |
| Msa0546880 | MtrunA17_Chr4g0005161 | 56.863 | 102 | 44 | 0 | 1 | 102 | 1 | 102 | 2.16e-39 | 127 |
| Msa0546880 | MtrunA17_Chr7g0238011 | 44.660 | 103 | 57 | 0 | 1 | 103 | 1 | 103 | 1.22e-29 | 103 |
| Msa0546880 | MtrunA17_Chr4g0071771 | 46.078 | 102 | 55 | 0 | 1 | 102 | 1 | 102 | 2.73e-26 | 94.4 |
| Msa0546880 | MtrunA17_Chr4g0071761 | 41.748 | 103 | 60 | 0 | 1 | 103 | 1 | 103 | 1.02e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546880 | AT3G51660.1 | 59.223 | 103 | 42 | 0 | 1 | 103 | 1 | 103 | 1.60e-41 | 133 |
| Msa0546880 | AT5G01650.2 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 4.26e-40 | 130 |
| Msa0546880 | AT5G01650.3 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 4.26e-40 | 130 |
| Msa0546880 | AT5G01650.4 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 7.40e-40 | 129 |
| Msa0546880 | AT5G01650.1 | 55.882 | 102 | 45 | 0 | 1 | 102 | 1 | 102 | 1.12e-39 | 128 |
| Msa0546880 | AT5G57170.2 | 46.078 | 102 | 55 | 0 | 1 | 102 | 1 | 102 | 2.61e-26 | 94.7 |
| Msa0546880 | AT5G57170.1 | 46.078 | 102 | 55 | 0 | 1 | 102 | 1 | 102 | 5.63e-26 | 94.0 |
Find 23 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACCAACGTTAATTTAGA+TGG | 0.290910 | 4_1:-39364354 | Msa0546880:CDS |
| CAGTACCATTGGCACAATAT+TGG | 0.301904 | 4_1:-39362868 | Msa0546880:CDS |
| ACTGCTGTTTCCACAATCAT+AGG | 0.405897 | 4_1:-39364297 | Msa0546880:CDS |
| TCAAAAGCATCACTACAGTT+TGG | 0.409372 | 4_1:+39362767 | None:intergenic |
| TCTCAAAGTCTTTGACATCA+TGG | 0.431478 | 4_1:-39362811 | Msa0546880:CDS |
| GAAGAGTGACATACCTTGTC+GGG | 0.442658 | 4_1:+39364270 | None:intergenic |
| GTTCTAGCTTGATCAAAGAT+AGG | 0.446427 | 4_1:+39364318 | None:intergenic |
| GTTTGTGATGGTTCTATTGA+AGG | 0.461686 | 4_1:-39362991 | Msa0546880:CDS |
| TGTTCTTGGTATAGAGAGGT+TGG | 0.461721 | 4_1:+39362842 | None:intergenic |
| AACAAAGAACCAGCTGCATA+TGG | 0.465591 | 4_1:-39362942 | Msa0546880:CDS |
| TTTGTGATGGTTCTATTGAA+GGG | 0.504158 | 4_1:-39362990 | Msa0546880:CDS |
| TAACGTTGGTAGAGATGTAA+AGG | 0.513197 | 4_1:+39364364 | None:intergenic |
| ATATGGTGAACTAGTTTCAA+TGG | 0.521191 | 4_1:-39362925 | Msa0546880:CDS |
| AAGAATCTAATCAGTACCAT+TGG | 0.529298 | 4_1:-39362879 | Msa0546880:CDS |
| GGATTCCAATATTGTGCCAA+TGG | 0.539625 | 4_1:+39362863 | None:intergenic |
| ATCTTGTTCTTGGTATAGAG+AGG | 0.571975 | 4_1:+39362838 | None:intergenic |
| ACTAGTTCACCATATGCAGC+TGG | 0.580662 | 4_1:+39362933 | None:intergenic |
| TTGTGATGGTTCTATTGAAG+GGG | 0.584227 | 4_1:-39362989 | Msa0546880:CDS |
| TATGGTGAACTAGTTTCAAT+GGG | 0.596371 | 4_1:-39362924 | Msa0546880:CDS |
| AGAAGAGTGACATACCTTGT+CGG | 0.618285 | 4_1:+39364269 | None:intergenic |
| GGTGAACTAGTTTCAATGGG+TGG | 0.635436 | 4_1:-39362921 | Msa0546880:CDS |
| TTGGTAGAGATGTAAAGGCA+AGG | 0.650566 | 4_1:+39364369 | None:intergenic |
| AATCATAGGAAAACCCGACA+AGG | 0.692062 | 4_1:-39364283 | Msa0546880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAACTAATTTCAAT+GGG | - | chr4_1:39363386-39363405 | Msa0546880:intron | 10.0% |
| !! | TTAAATAAACTAATTTCAAT+GGG | - | chr4_1:39363386-39363405 | Msa0546880:intron | 10.0% |
| !!! | CACAAAATTAATATGAATTT+TGG | - | chr4_1:39362977-39362996 | Msa0546880:CDS | 15.0% |
| !!! | ATTTATTTCTCAAAATCAAA+TGG | - | chr4_1:39363287-39363306 | Msa0546880:intron | 15.0% |
| !! | GTTAAATAAACTAATTTCAA+TGG | - | chr4_1:39363385-39363404 | Msa0546880:intron | 15.0% |
| !! | AAATAAAAAAGAATTTCACT+TGG | + | chr4_1:39363721-39363740 | None:intergenic | 15.0% |
| !!! | CACAAAATTAATATGAATTT+TGG | - | chr4_1:39362977-39362996 | Msa0546880:CDS | 15.0% |
| !!! | ATTTATTTCTCAAAATCAAA+TGG | - | chr4_1:39363287-39363306 | Msa0546880:intron | 15.0% |
| !! | GTTAAATAAACTAATTTCAA+TGG | - | chr4_1:39363385-39363404 | Msa0546880:intron | 15.0% |
| !! | AAATAAAAAAGAATTTCACT+TGG | + | chr4_1:39363721-39363740 | None:intergenic | 15.0% |
| !!! | ATTTTGGATTTTGTTGATTA+TGG | - | chr4_1:39362993-39363012 | Msa0546880:CDS | 20.0% |
| !!! | TTGTTATTTTCAAACGATAT+TGG | + | chr4_1:39364194-39364213 | None:intergenic | 20.0% |
| !!! | ATTTTGGATTTTGTTGATTA+TGG | - | chr4_1:39362993-39363012 | Msa0546880:CDS | 20.0% |
| !!! | TTGTTATTTTCAAACGATAT+TGG | + | chr4_1:39364194-39364213 | None:intergenic | 20.0% |
| !! | TTTTCCATCTAAATTAACGT+TGG | + | chr4_1:39362804-39362823 | None:intergenic | 25.0% |
| !! | TGTTTTACAAATAAAGCTTG+TGG | - | chr4_1:39362914-39362933 | Msa0546880:CDS | 25.0% |
| !! | ACTGATTCATAATGTTTGAT+TGG | - | chr4_1:39363062-39363081 | Msa0546880:intron | 25.0% |
| ! | AAGTAAGTAAATAGCCAAAT+TGG | - | chr4_1:39363832-39363851 | Msa0546880:intron | 25.0% |
| ! | CCTCTAATGATAAAAATTGA+TGG | + | chr4_1:39363951-39363970 | None:intergenic | 25.0% |
| !! | CCATCAATTTTTATCATTAG+AGG | - | chr4_1:39363948-39363967 | Msa0546880:intron | 25.0% |
| ! | ACATACATAGTGATATTTCA+AGG | - | chr4_1:39363981-39364000 | Msa0546880:intron | 25.0% |
| !!! | ATACCATGCAATTTAGTTTT+GGG | + | chr4_1:39364032-39364051 | None:intergenic | 25.0% |
| !!! | TATACCATGCAATTTAGTTT+TGG | + | chr4_1:39364033-39364052 | None:intergenic | 25.0% |
| ! | GCATGGTATAAAAATTTATG+AGG | - | chr4_1:39364043-39364062 | Msa0546880:intron | 25.0% |
| ! | TTGAGAAAAAATCTTGTTCT+TGG | + | chr4_1:39364326-39364345 | None:intergenic | 25.0% |
| !! | TTTTCCATCTAAATTAACGT+TGG | + | chr4_1:39362804-39362823 | None:intergenic | 25.0% |
| !! | TGTTTTACAAATAAAGCTTG+TGG | - | chr4_1:39362914-39362933 | Msa0546880:CDS | 25.0% |
| !! | ACTGATTCATAATGTTTGAT+TGG | - | chr4_1:39363062-39363081 | Msa0546880:intron | 25.0% |
| ! | AAGTAAGTAAATAGCCAAAT+TGG | - | chr4_1:39363832-39363851 | Msa0546880:intron | 25.0% |
| ! | CCTCTAATGATAAAAATTGA+TGG | + | chr4_1:39363951-39363970 | None:intergenic | 25.0% |
| !! | CCATCAATTTTTATCATTAG+AGG | - | chr4_1:39363948-39363967 | Msa0546880:intron | 25.0% |
| ! | ACATACATAGTGATATTTCA+AGG | - | chr4_1:39363981-39364000 | Msa0546880:intron | 25.0% |
| !!! | ATACCATGCAATTTAGTTTT+GGG | + | chr4_1:39364032-39364051 | None:intergenic | 25.0% |
| !!! | TATACCATGCAATTTAGTTT+TGG | + | chr4_1:39364033-39364052 | None:intergenic | 25.0% |
| ! | GCATGGTATAAAAATTTATG+AGG | - | chr4_1:39364043-39364062 | Msa0546880:intron | 25.0% |
| ! | TTGAGAAAAAATCTTGTTCT+TGG | + | chr4_1:39364326-39364345 | None:intergenic | 25.0% |
| TCTACCAACGTTAATTTAGA+TGG | - | chr4_1:39362797-39362816 | Msa0546880:CDS | 30.0% | |
| CAAATAAAGCTTGTGGAATT+TGG | - | chr4_1:39362921-39362940 | Msa0546880:CDS | 30.0% | |
| GTTGTGTGAAAATCCTTTAA+GGG | - | chr4_1:39362950-39362969 | Msa0546880:CDS | 30.0% | |
| ! | AATTTTGTGTCAACCCTTAA+AGG | + | chr4_1:39362966-39362985 | None:intergenic | 30.0% |
| !! | CATAATGTTTGATTGGTTTC+TGG | - | chr4_1:39363069-39363088 | Msa0546880:intron | 30.0% |
| !! | TGATTGGTTTCTGGTATAAT+TGG | - | chr4_1:39363078-39363097 | Msa0546880:intron | 30.0% |
| ! | TGACAAGTTTTCTACAGAAA+AGG | + | chr4_1:39363217-39363236 | None:intergenic | 30.0% |
| ! | TGCTCTTTGATGCAATTTTT+AGG | - | chr4_1:39363494-39363513 | Msa0546880:intron | 30.0% |
| ! | GCTCTTTGATGCAATTTTTA+GGG | - | chr4_1:39363495-39363514 | Msa0546880:intron | 30.0% |
| !!! | CAATTTAGTTTTGGGTTATG+TGG | + | chr4_1:39364024-39364043 | None:intergenic | 30.0% |
| TAACCCAAAACTAAATTGCA+TGG | - | chr4_1:39364026-39364045 | Msa0546880:intron | 30.0% | |
| ! | GTAATTTTTGCAGTTTGTGA+TGG | - | chr4_1:39364148-39364167 | Msa0546880:intron | 30.0% |
| ! | TTTGTGATGGTTCTATTGAA+GGG | - | chr4_1:39364161-39364180 | Msa0546880:intron | 30.0% |
| ! | ATATGGTGAACTAGTTTCAA+TGG | - | chr4_1:39364226-39364245 | Msa0546880:intron | 30.0% |
| ! | TATGGTGAACTAGTTTCAAT+GGG | - | chr4_1:39364227-39364246 | Msa0546880:intron | 30.0% |
| AAGAATCTAATCAGTACCAT+TGG | - | chr4_1:39364272-39364291 | Msa0546880:intron | 30.0% | |
| TCTACCAACGTTAATTTAGA+TGG | - | chr4_1:39362797-39362816 | Msa0546880:CDS | 30.0% | |
| CAAATAAAGCTTGTGGAATT+TGG | - | chr4_1:39362921-39362940 | Msa0546880:CDS | 30.0% | |
| GTTGTGTGAAAATCCTTTAA+GGG | - | chr4_1:39362950-39362969 | Msa0546880:CDS | 30.0% | |
| ! | AATTTTGTGTCAACCCTTAA+AGG | + | chr4_1:39362966-39362985 | None:intergenic | 30.0% |
| !! | CATAATGTTTGATTGGTTTC+TGG | - | chr4_1:39363069-39363088 | Msa0546880:intron | 30.0% |
| !! | TGATTGGTTTCTGGTATAAT+TGG | - | chr4_1:39363078-39363097 | Msa0546880:intron | 30.0% |
| ! | TGACAAGTTTTCTACAGAAA+AGG | + | chr4_1:39363217-39363236 | None:intergenic | 30.0% |
| ! | TGCTCTTTGATGCAATTTTT+AGG | - | chr4_1:39363494-39363513 | Msa0546880:intron | 30.0% |
| ! | GCTCTTTGATGCAATTTTTA+GGG | - | chr4_1:39363495-39363514 | Msa0546880:intron | 30.0% |
| !!! | CAATTTAGTTTTGGGTTATG+TGG | + | chr4_1:39364024-39364043 | None:intergenic | 30.0% |
| TAACCCAAAACTAAATTGCA+TGG | - | chr4_1:39364026-39364045 | Msa0546880:intron | 30.0% | |
| ! | GTAATTTTTGCAGTTTGTGA+TGG | - | chr4_1:39364148-39364167 | Msa0546880:intron | 30.0% |
| ! | TTTGTGATGGTTCTATTGAA+GGG | - | chr4_1:39364161-39364180 | Msa0546880:intron | 30.0% |
| ! | ATATGGTGAACTAGTTTCAA+TGG | - | chr4_1:39364226-39364245 | Msa0546880:intron | 30.0% |
| ! | TATGGTGAACTAGTTTCAAT+GGG | - | chr4_1:39364227-39364246 | Msa0546880:intron | 30.0% |
| AAGAATCTAATCAGTACCAT+TGG | - | chr4_1:39364272-39364291 | Msa0546880:intron | 30.0% | |
| ! | TAACGTTGGTAGAGATGTAA+AGG | + | chr4_1:39362790-39362809 | None:intergenic | 35.0% |
| !! | GTTCTAGCTTGATCAAAGAT+AGG | + | chr4_1:39362836-39362855 | None:intergenic | 35.0% |
| ! | AGCTTGTGGAATTTGGTTTA+AGG | - | chr4_1:39362928-39362947 | Msa0546880:CDS | 35.0% |
| GGTTGTGTGAAAATCCTTTA+AGG | - | chr4_1:39362949-39362968 | Msa0546880:CDS | 35.0% | |
| AGAAAAGGCAGAGAGTAAAA+GGG | + | chr4_1:39363202-39363221 | None:intergenic | 35.0% | |
| AAATAAGACAGCAGACTAGT+TGG | - | chr4_1:39363433-39363452 | Msa0546880:intron | 35.0% | |
| CTTGGAACAAAGTACAACAT+GGG | + | chr4_1:39363703-39363722 | None:intergenic | 35.0% | |
| ACTTGGAACAAAGTACAACA+TGG | + | chr4_1:39363704-39363723 | None:intergenic | 35.0% | |
| TCTTTGTGCGCAAAGTTAAT+AGG | + | chr4_1:39363803-39363822 | None:intergenic | 35.0% | |
| ! | TTTGCGCACAAAGAATTTTG+CGG | - | chr4_1:39363809-39363828 | Msa0546880:intron | 35.0% |
| !!! | CACAGTTTTGAGTACCAATT+TGG | + | chr4_1:39363849-39363868 | None:intergenic | 35.0% |
| ! | GTTTGTGATGGTTCTATTGA+AGG | - | chr4_1:39364160-39364179 | Msa0546880:intron | 35.0% |
| ! | TTGTGATGGTTCTATTGAAG+GGG | - | chr4_1:39364162-39364181 | Msa0546880:intron | 35.0% |
| ATCTTGTTCTTGGTATAGAG+AGG | + | chr4_1:39364316-39364335 | None:intergenic | 35.0% | |
| TCTCAAAGTCTTTGACATCA+TGG | - | chr4_1:39364340-39364359 | Msa0546880:CDS | 35.0% | |
| ! | TAACGTTGGTAGAGATGTAA+AGG | + | chr4_1:39362790-39362809 | None:intergenic | 35.0% |
| !! | GTTCTAGCTTGATCAAAGAT+AGG | + | chr4_1:39362836-39362855 | None:intergenic | 35.0% |
| ! | AGCTTGTGGAATTTGGTTTA+AGG | - | chr4_1:39362928-39362947 | Msa0546880:CDS | 35.0% |
| GGTTGTGTGAAAATCCTTTA+AGG | - | chr4_1:39362949-39362968 | Msa0546880:CDS | 35.0% | |
| AGAAAAGGCAGAGAGTAAAA+GGG | + | chr4_1:39363202-39363221 | None:intergenic | 35.0% | |
| AAATAAGACAGCAGACTAGT+TGG | - | chr4_1:39363433-39363452 | Msa0546880:intron | 35.0% | |
| CTTGGAACAAAGTACAACAT+GGG | + | chr4_1:39363703-39363722 | None:intergenic | 35.0% | |
| ACTTGGAACAAAGTACAACA+TGG | + | chr4_1:39363704-39363723 | None:intergenic | 35.0% | |
| TCTTTGTGCGCAAAGTTAAT+AGG | + | chr4_1:39363803-39363822 | None:intergenic | 35.0% | |
| ! | TTTGCGCACAAAGAATTTTG+CGG | - | chr4_1:39363809-39363828 | Msa0546880:intron | 35.0% |
| !!! | CACAGTTTTGAGTACCAATT+TGG | + | chr4_1:39363849-39363868 | None:intergenic | 35.0% |
| ! | GTTTGTGATGGTTCTATTGA+AGG | - | chr4_1:39364160-39364179 | Msa0546880:intron | 35.0% |
| ! | TTGTGATGGTTCTATTGAAG+GGG | - | chr4_1:39364162-39364181 | Msa0546880:intron | 35.0% |
| ATCTTGTTCTTGGTATAGAG+AGG | + | chr4_1:39364316-39364335 | None:intergenic | 35.0% | |
| TCTCAAAGTCTTTGACATCA+TGG | - | chr4_1:39364340-39364359 | Msa0546880:CDS | 35.0% | |
| TTGGTAGAGATGTAAAGGCA+AGG | + | chr4_1:39362785-39362804 | None:intergenic | 40.0% | |
| !! | ACTGCTGTTTCCACAATCAT+AGG | - | chr4_1:39362854-39362873 | Msa0546880:CDS | 40.0% |
| AATCATAGGAAAACCCGACA+AGG | - | chr4_1:39362868-39362887 | Msa0546880:CDS | 40.0% | |
| AGAAGAGTGACATACCTTGT+CGG | + | chr4_1:39362885-39362904 | None:intergenic | 40.0% | |
| GAAGTGTACACTTCTCTGTT+TGG | - | chr4_1:39363147-39363166 | Msa0546880:intron | 40.0% | |
| CAGAAAAGGCAGAGAGTAAA+AGG | + | chr4_1:39363203-39363222 | None:intergenic | 40.0% | |
| GATAACTTCTATGTGCTGGA+CGG | + | chr4_1:39363758-39363777 | None:intergenic | 40.0% | |
| CCATGATAACTTCTATGTGC+TGG | + | chr4_1:39363762-39363781 | None:intergenic | 40.0% | |
| CCAGCACATAGAAGTTATCA+TGG | - | chr4_1:39363759-39363778 | Msa0546880:intron | 40.0% | |
| ! | CGATGTGATAGTCTTAGAGT+TGG | - | chr4_1:39364093-39364112 | Msa0546880:intron | 40.0% |
| AACAAAGAACCAGCTGCATA+TGG | - | chr4_1:39364209-39364228 | Msa0546880:intron | 40.0% | |
| CAGTACCATTGGCACAATAT+TGG | - | chr4_1:39364283-39364302 | Msa0546880:intron | 40.0% | |
| GGATTCCAATATTGTGCCAA+TGG | + | chr4_1:39364291-39364310 | None:intergenic | 40.0% | |
| TGTTCTTGGTATAGAGAGGT+TGG | + | chr4_1:39364312-39364331 | None:intergenic | 40.0% | |
| TTGGTAGAGATGTAAAGGCA+AGG | + | chr4_1:39362785-39362804 | None:intergenic | 40.0% | |
| !! | ACTGCTGTTTCCACAATCAT+AGG | - | chr4_1:39362854-39362873 | Msa0546880:CDS | 40.0% |
| AATCATAGGAAAACCCGACA+AGG | - | chr4_1:39362868-39362887 | Msa0546880:CDS | 40.0% | |
| AGAAGAGTGACATACCTTGT+CGG | + | chr4_1:39362885-39362904 | None:intergenic | 40.0% | |
| GAAGTGTACACTTCTCTGTT+TGG | - | chr4_1:39363147-39363166 | Msa0546880:intron | 40.0% | |
| CAGAAAAGGCAGAGAGTAAA+AGG | + | chr4_1:39363203-39363222 | None:intergenic | 40.0% | |
| GATAACTTCTATGTGCTGGA+CGG | + | chr4_1:39363758-39363777 | None:intergenic | 40.0% | |
| CCATGATAACTTCTATGTGC+TGG | + | chr4_1:39363762-39363781 | None:intergenic | 40.0% | |
| CCAGCACATAGAAGTTATCA+TGG | - | chr4_1:39363759-39363778 | Msa0546880:intron | 40.0% | |
| ! | CGATGTGATAGTCTTAGAGT+TGG | - | chr4_1:39364093-39364112 | Msa0546880:intron | 40.0% |
| AACAAAGAACCAGCTGCATA+TGG | - | chr4_1:39364209-39364228 | Msa0546880:intron | 40.0% | |
| CAGTACCATTGGCACAATAT+TGG | - | chr4_1:39364283-39364302 | Msa0546880:intron | 40.0% | |
| GGATTCCAATATTGTGCCAA+TGG | + | chr4_1:39364291-39364310 | None:intergenic | 40.0% | |
| TGTTCTTGGTATAGAGAGGT+TGG | + | chr4_1:39364312-39364331 | None:intergenic | 40.0% | |
| ! | GTCGGGTTTTCCTATGATTG+TGG | + | chr4_1:39362867-39362886 | None:intergenic | 45.0% |
| GAAGAGTGACATACCTTGTC+GGG | + | chr4_1:39362884-39362903 | None:intergenic | 45.0% | |
| ! | TAAGACAGCAGACTAGTTGG+AGG | - | chr4_1:39363436-39363455 | Msa0546880:intron | 45.0% |
| ! | TTGGAGGCTTTTCTGTCTGT+AGG | - | chr4_1:39363452-39363471 | Msa0546880:intron | 45.0% |
| GGGTTATGTGGCATTGTTGT+AGG | + | chr4_1:39364012-39364031 | None:intergenic | 45.0% | |
| ACTAGTTCACCATATGCAGC+TGG | + | chr4_1:39364221-39364240 | None:intergenic | 45.0% | |
| ! | GGTGAACTAGTTTCAATGGG+TGG | - | chr4_1:39364230-39364249 | Msa0546880:intron | 45.0% |
| ! | GTCGGGTTTTCCTATGATTG+TGG | + | chr4_1:39362867-39362886 | None:intergenic | 45.0% |
| GAAGAGTGACATACCTTGTC+GGG | + | chr4_1:39362884-39362903 | None:intergenic | 45.0% | |
| ! | TAAGACAGCAGACTAGTTGG+AGG | - | chr4_1:39363436-39363455 | Msa0546880:intron | 45.0% |
| ! | TTGGAGGCTTTTCTGTCTGT+AGG | - | chr4_1:39363452-39363471 | Msa0546880:intron | 45.0% |
| GGGTTATGTGGCATTGTTGT+AGG | + | chr4_1:39364012-39364031 | None:intergenic | 45.0% | |
| ACTAGTTCACCATATGCAGC+TGG | + | chr4_1:39364221-39364240 | None:intergenic | 45.0% | |
| ! | GGTGAACTAGTTTCAATGGG+TGG | - | chr4_1:39364230-39364249 | Msa0546880:intron | 45.0% |
| !!! | TTTTTATTGTATAAATATAA+TGG | - | chr4_1:39363360-39363379 | Msa0546880:intron | 5.0% |
| !!! | TTTTTATTGTATAAATATAA+TGG | - | chr4_1:39363360-39363379 | Msa0546880:intron | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 39362779 | 39364394 | 39362779 | ID=Msa0546880;Name=Msa0546880 |
| chr4_1 | mRNA | 39362779 | 39364394 | 39362779 | ID=Msa0546880-mRNA-1;Parent=Msa0546880;Name=Msa0546880-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0|1|1|1|2|0|114 |
| chr4_1 | exon | 39364284 | 39364394 | 39364284 | ID=Msa0546880-mRNA-1:exon:10011;Parent=Msa0546880-mRNA-1 |
| chr4_1 | exon | 39362779 | 39363012 | 39362779 | ID=Msa0546880-mRNA-1:exon:10010;Parent=Msa0546880-mRNA-1 |
| chr4_1 | CDS | 39364284 | 39364394 | 39364284 | ID=Msa0546880-mRNA-1:cds;Parent=Msa0546880-mRNA-1 |
| chr4_1 | CDS | 39362779 | 39363012 | 39362779 | ID=Msa0546880-mRNA-1:cds;Parent=Msa0546880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
