Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145160 | sp|Q8L8T7|COR27_ARATH | 37.931 | 174 | 90 | 6 | 9 | 168 | 47 | 216 | 2.91e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145160 | G7I3J6 | 94.286 | 175 | 9 | 1 | 1 | 175 | 1 | 174 | 8.85e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0145160 | 0.809492 | 1.842653e-50 | -8.615850e-47 |
| Msa0023000 | Msa0145160 | 0.805627 | 1.218478e-49 | -8.615850e-47 |
| Msa0026680 | Msa0145160 | 0.919632 | 3.530559e-87 | -8.615850e-47 |
| Msa0032580 | Msa0145160 | 0.802240 | 6.162911e-49 | -8.615850e-47 |
| Msa0140630 | Msa0145160 | 0.817214 | 3.703306e-52 | -8.615850e-47 |
| Msa0145080 | Msa0145160 | 0.835588 | 1.537556e-56 | -8.615850e-47 |
| Msa0145160 | Msa0156370 | 0.814408 | 1.564673e-51 | -8.615850e-47 |
| Msa0145160 | Msa0162130 | 0.819479 | 1.136457e-52 | -8.615850e-47 |
| Msa0145160 | Msa0355140 | 0.804478 | 2.119470e-49 | -8.615850e-47 |
| Msa0145160 | Msa0381500 | 0.816938 | 4.271842e-52 | -8.615850e-47 |
| Msa0145160 | Msa0402210 | 0.801753 | 7.760609e-49 | -8.615850e-47 |
| Msa0145160 | Msa0519950 | 0.813338 | 2.691987e-51 | -8.615850e-47 |
| Msa0145160 | Msa0534900 | 0.812991 | 3.207979e-51 | -8.615850e-47 |
| Msa0145160 | Msa0660490 | 0.802829 | 4.659034e-49 | -8.615850e-47 |
| Msa0145160 | Msa0708930 | 0.809863 | 1.533433e-50 | -8.615850e-47 |
| Msa0145160 | Msa0738380 | 0.856398 | 3.306398e-62 | -8.615850e-47 |
| Msa0145160 | Msa0784860 | 0.848297 | 6.706433e-60 | -8.615850e-47 |
| Msa0145160 | Msa0817730 | 0.826426 | 2.730374e-54 | -8.615850e-47 |
| Msa0145160 | Msa0818750 | 0.832091 | 1.151846e-55 | -8.615850e-47 |
| Msa0145160 | Msa0858180 | 0.825305 | 5.041089e-54 | -8.615850e-47 |
| Msa0145160 | Msa0861860 | 0.802916 | 4.469373e-49 | -8.615850e-47 |
| Msa0145160 | Msa0968610 | 0.828528 | 8.552266e-55 | -8.615850e-47 |
| Msa0145160 | Msa1353750 | 0.815920 | 7.218497e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145160 | MtrunA17_Chr1g0153331 | 94.286 | 175 | 9 | 1 | 1 | 175 | 1 | 174 | 1.70e-123 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145160 | AT5G42900.1 | 37.931 | 174 | 90 | 6 | 9 | 168 | 47 | 216 | 2.96e-25 | 97.8 |
| Msa0145160 | AT5G42900.2 | 37.931 | 174 | 90 | 6 | 9 | 168 | 47 | 216 | 2.96e-25 | 97.8 |
| Msa0145160 | AT5G42900.3 | 38.012 | 171 | 93 | 5 | 9 | 168 | 47 | 215 | 5.84e-25 | 97.1 |
Find 26 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTTGGGCCTTCCTTTGC+TGG | 0.272512 | 1_4:-4816869 | None:intergenic |
| TTTATCATGAAAATATGCTT+TGG | 0.399923 | 1_4:+4817937 | Msa0145160:CDS |
| GGATTAACTTTACTCATTTG+TGG | 0.403011 | 1_4:-4817747 | None:intergenic |
| AATATGCTTTGGAGCGATAC+AGG | 0.407619 | 1_4:+4817948 | Msa0145160:CDS |
| CGCGAAACGACGAAAATCAT+TGG | 0.419427 | 1_4:+4818136 | Msa0145160:CDS |
| AAAAGAAGCCCCTGGTTGCT+TGG | 0.432229 | 1_4:-4816845 | None:intergenic |
| CAACTTGTTGTTGAGCTGTA+GGG | 0.456834 | 1_4:-4817848 | None:intergenic |
| AGGTTCTTCGAGGTGGTTGT+TGG | 0.465085 | 1_4:+4817697 | Msa0145160:CDS |
| CAACAGTTCAAGGTTCTTCG+AGG | 0.499617 | 1_4:+4817687 | Msa0145160:intron |
| ACAACTTGTTGTTGAGCTGT+AGG | 0.511182 | 1_4:-4817849 | None:intergenic |
| CTTGGCTCGTGCAGAAGTGT+CGG | 0.519163 | 1_4:+4818061 | Msa0145160:intron |
| CAACGAATCTACTACTGGCC+AGG | 0.527699 | 1_4:+4816885 | Msa0145160:CDS |
| GATCGATAGTGTTGAATCCA+TGG | 0.532050 | 1_4:-4817792 | None:intergenic |
| TGGCCAGTAGTAGATTCGTT+GGG | 0.558931 | 1_4:-4816883 | None:intergenic |
| CTGGCCAGTAGTAGATTCGT+TGG | 0.560774 | 1_4:-4816884 | None:intergenic |
| AGGCCCAACGAATCTACTAC+TGG | 0.564466 | 1_4:+4816880 | Msa0145160:CDS |
| CAGTTCAAGGTTCTTCGAGG+TGG | 0.575031 | 1_4:+4817690 | Msa0145160:intron |
| TTATATGATTCCAAGCAACC+AGG | 0.576406 | 1_4:+4816835 | Msa0145160:CDS |
| TAGAGAAACTGAAGAGTGGA+CGG | 0.591236 | 1_4:+4816759 | Msa0145160:CDS |
| TGTTGTTGAGCTGTAGGGGA+TGG | 0.619660 | 1_4:-4817843 | None:intergenic |
| AACTTGTTGTTGAGCTGTAG+GGG | 0.627213 | 1_4:-4817847 | None:intergenic |
| AAGTTGTTACTTCAAGCCAA+AGG | 0.633769 | 1_4:+4817865 | Msa0145160:CDS |
| TATATGATTCCAAGCAACCA+GGG | 0.650365 | 1_4:+4816836 | Msa0145160:CDS |
| GAATTAGAGAAACTGAAGAG+TGG | 0.658510 | 1_4:+4816755 | Msa0145160:CDS |
| CTTGCAATAAAATCATTGTG+TGG | 0.659878 | 1_4:-4817768 | None:intergenic |
| ATATGATTCCAAGCAACCAG+GGG | 0.665275 | 1_4:+4816837 | Msa0145160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAAATATTAAAATT+AGG | + | chr1_4:4816950-4816969 | Msa0145160:intron | 0.0% |
| !! | AATTATTAAATATTAAAATT+AGG | + | chr1_4:4816950-4816969 | Msa0145160:intron | 0.0% |
| !! | AAAAATAAAATAAAATCATG+TGG | - | chr1_4:4815815-4815834 | None:intergenic | 10.0% |
| !! | TTTATATATGCTTAATATTA+AGG | + | chr1_4:4815877-4815896 | Msa0145160:intron | 10.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | - | chr1_4:4817060-4817079 | None:intergenic | 10.0% |
| !! | CAAATAAAAAAAAAAAAATC+AGG | + | chr1_4:4817246-4817265 | Msa0145160:intron | 10.0% |
| !! | AAAAATAAAATAAAATCATG+TGG | - | chr1_4:4815815-4815834 | None:intergenic | 10.0% |
| !! | TTTATATATGCTTAATATTA+AGG | + | chr1_4:4815877-4815896 | Msa0145160:intron | 10.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | - | chr1_4:4817060-4817079 | None:intergenic | 10.0% |
| !! | CAAATAAAAAAAAAAAAATC+AGG | + | chr1_4:4817246-4817265 | Msa0145160:intron | 10.0% |
| !! | AAATATCTAAGAAACATTTA+GGG | - | chr1_4:4815757-4815776 | None:intergenic | 15.0% |
| !! | AAAATATCTAAGAAACATTT+AGG | - | chr1_4:4815758-4815777 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCAGTAGATTTAA+AGG | + | chr1_4:4816210-4816229 | Msa0145160:intron | 15.0% |
| !!! | TATGAATAGTATGTAAATTT+TGG | + | chr1_4:4816621-4816640 | Msa0145160:intron | 15.0% |
| !!! | ATGAATAGTATGTAAATTTT+GGG | + | chr1_4:4816622-4816641 | Msa0145160:intron | 15.0% |
| !!! | ATTTGTTATGAAAAATTATC+AGG | + | chr1_4:4816732-4816751 | Msa0145160:intron | 15.0% |
| !!! | TTTGTTATGAAAAATTATCA+GGG | + | chr1_4:4816733-4816752 | Msa0145160:intron | 15.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | - | chr1_4:4816924-4816943 | None:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | - | chr1_4:4816925-4816944 | None:intergenic | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | - | chr1_4:4817996-4818015 | None:intergenic | 15.0% |
| !! | AAATATCTAAGAAACATTTA+GGG | - | chr1_4:4815757-4815776 | None:intergenic | 15.0% |
| !! | AAAATATCTAAGAAACATTT+AGG | - | chr1_4:4815758-4815777 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCAGTAGATTTAA+AGG | + | chr1_4:4816210-4816229 | Msa0145160:intron | 15.0% |
| !!! | TATGAATAGTATGTAAATTT+TGG | + | chr1_4:4816621-4816640 | Msa0145160:intron | 15.0% |
| !!! | ATGAATAGTATGTAAATTTT+GGG | + | chr1_4:4816622-4816641 | Msa0145160:intron | 15.0% |
| !!! | ATTTGTTATGAAAAATTATC+AGG | + | chr1_4:4816732-4816751 | Msa0145160:intron | 15.0% |
| !!! | TTTGTTATGAAAAATTATCA+GGG | + | chr1_4:4816733-4816752 | Msa0145160:intron | 15.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | - | chr1_4:4816924-4816943 | None:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | - | chr1_4:4816925-4816944 | None:intergenic | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | - | chr1_4:4817996-4818015 | None:intergenic | 15.0% |
| !! | TGTAAAAACTAAAAACACAA+AGG | - | chr1_4:4815792-4815811 | None:intergenic | 20.0% |
| !! | CTTAATATTAAGGATAAAGA+TGG | + | chr1_4:4815887-4815906 | Msa0145160:intron | 20.0% |
| !!! | ACTTCATTTTGATAAATAAC+TGG | + | chr1_4:4816359-4816378 | Msa0145160:intron | 20.0% |
| !! | TACAAATAAATATCTACCAT+AGG | + | chr1_4:4816540-4816559 | Msa0145160:intron | 20.0% |
| !! | ATAACAAATAAACATTTAGC+TGG | - | chr1_4:4816721-4816740 | None:intergenic | 20.0% |
| !!! | GTGTGTTTTTTTTTTTTTGA+GGG | - | chr1_4:4817090-4817109 | None:intergenic | 20.0% |
| !!! | TGTGTGTTTTTTTTTTTTTG+AGG | - | chr1_4:4817091-4817110 | None:intergenic | 20.0% |
| !! | TTAATTCATCTCTTTATCTT+GGG | - | chr1_4:4817208-4817227 | None:intergenic | 20.0% |
| !! | ATTAATTCATCTCTTTATCT+TGG | - | chr1_4:4817209-4817228 | None:intergenic | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | + | chr1_4:4817937-4817956 | Msa0145160:CDS | 20.0% |
| !! | TGTAAAAACTAAAAACACAA+AGG | - | chr1_4:4815792-4815811 | None:intergenic | 20.0% |
| !! | CTTAATATTAAGGATAAAGA+TGG | + | chr1_4:4815887-4815906 | Msa0145160:intron | 20.0% |
| !!! | ACTTCATTTTGATAAATAAC+TGG | + | chr1_4:4816359-4816378 | Msa0145160:intron | 20.0% |
| !! | TACAAATAAATATCTACCAT+AGG | + | chr1_4:4816540-4816559 | Msa0145160:intron | 20.0% |
| !! | ATAACAAATAAACATTTAGC+TGG | - | chr1_4:4816721-4816740 | None:intergenic | 20.0% |
| !!! | GTGTGTTTTTTTTTTTTTGA+GGG | - | chr1_4:4817090-4817109 | None:intergenic | 20.0% |
| !!! | TGTGTGTTTTTTTTTTTTTG+AGG | - | chr1_4:4817091-4817110 | None:intergenic | 20.0% |
| !! | TTAATTCATCTCTTTATCTT+GGG | - | chr1_4:4817208-4817227 | None:intergenic | 20.0% |
| !! | ATTAATTCATCTCTTTATCT+TGG | - | chr1_4:4817209-4817228 | None:intergenic | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | + | chr1_4:4817937-4817956 | Msa0145160:CDS | 20.0% |
| !!! | TATTTTGAGAGCAATAAAGA+TGG | + | chr1_4:4816065-4816084 | Msa0145160:intron | 25.0% |
| ! | TTAGCACAATAAAAACCAAA+CGG | - | chr1_4:4816317-4816336 | None:intergenic | 25.0% |
| !! | ATCTATTTGCTAAATTCCTA+TGG | - | chr1_4:4816559-4816578 | None:intergenic | 25.0% |
| !!! | ATCTTATTTTTGCAAGTAGT+TGG | + | chr1_4:4816583-4816602 | Msa0145160:intron | 25.0% |
| ! | AAATGCAGAAATGATCTTAT+TGG | + | chr1_4:4816688-4816707 | Msa0145160:intron | 25.0% |
| ! | AATGCAGAAATGATCTTATT+GGG | + | chr1_4:4816689-4816708 | Msa0145160:intron | 25.0% |
| ! | TATGTAAGCCTAAGAAAAAA+AGG | + | chr1_4:4817006-4817025 | Msa0145160:intron | 25.0% |
| !!! | TTATCTCTCCTTTTTTTCTT+AGG | - | chr1_4:4817017-4817036 | None:intergenic | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | - | chr1_4:4817235-4817254 | None:intergenic | 25.0% |
| ! | AATATGTTGTAGTGTGTATA+TGG | + | chr1_4:4817338-4817357 | Msa0145160:intron | 25.0% |
| ! | ATTACACAAATGAAAGAAGT+TGG | + | chr1_4:4817438-4817457 | Msa0145160:intron | 25.0% |
| ! | AAGAAAATTTCCTCAAAAAC+AGG | + | chr1_4:4817888-4817907 | Msa0145160:CDS | 25.0% |
| !!! | TATTTTGAGAGCAATAAAGA+TGG | + | chr1_4:4816065-4816084 | Msa0145160:intron | 25.0% |
| ! | TTAGCACAATAAAAACCAAA+CGG | - | chr1_4:4816317-4816336 | None:intergenic | 25.0% |
| !! | ATCTATTTGCTAAATTCCTA+TGG | - | chr1_4:4816559-4816578 | None:intergenic | 25.0% |
| !!! | ATCTTATTTTTGCAAGTAGT+TGG | + | chr1_4:4816583-4816602 | Msa0145160:intron | 25.0% |
| ! | AAATGCAGAAATGATCTTAT+TGG | + | chr1_4:4816688-4816707 | Msa0145160:intron | 25.0% |
| ! | AATGCAGAAATGATCTTATT+GGG | + | chr1_4:4816689-4816708 | Msa0145160:intron | 25.0% |
| ! | TATGTAAGCCTAAGAAAAAA+AGG | + | chr1_4:4817006-4817025 | Msa0145160:intron | 25.0% |
| !!! | TTATCTCTCCTTTTTTTCTT+AGG | - | chr1_4:4817017-4817036 | None:intergenic | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | - | chr1_4:4817235-4817254 | None:intergenic | 25.0% |
| ! | AATATGTTGTAGTGTGTATA+TGG | + | chr1_4:4817338-4817357 | Msa0145160:intron | 25.0% |
| ! | ATTACACAAATGAAAGAAGT+TGG | + | chr1_4:4817438-4817457 | Msa0145160:intron | 25.0% |
| ! | AAGAAAATTTCCTCAAAAAC+AGG | + | chr1_4:4817888-4817907 | Msa0145160:CDS | 25.0% |
| AAGGATAAAGATGGAGATTT+AGG | + | chr1_4:4815896-4815915 | Msa0145160:intron | 30.0% | |
| AGGATAAAGATGGAGATTTA+GGG | + | chr1_4:4815897-4815916 | Msa0145160:intron | 30.0% | |
| GAAATGAAGAATATTCCGTT+TGG | + | chr1_4:4816299-4816318 | Msa0145160:intron | 30.0% | |
| GTATGAATAGCAAGTGAAAT+CGG | - | chr1_4:4816651-4816670 | None:intergenic | 30.0% | |
| !! | GATTTCACTTGCTATTCATA+CGG | + | chr1_4:4816650-4816669 | Msa0145160:intron | 30.0% |
| !!! | TGCTTTTTTAAGAAGCCAAA+AGG | + | chr1_4:4817042-4817061 | Msa0145160:intron | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | - | chr1_4:4817121-4817140 | None:intergenic | 30.0% |
| TTGGGTATGATACTTCATAA+TGG | - | chr1_4:4817190-4817209 | None:intergenic | 30.0% | |
| TACAACATATTCTTATCGCT+AGG | - | chr1_4:4817329-4817348 | None:intergenic | 30.0% | |
| !! | AGAGGAGTATTTAAAGAAGT+TGG | - | chr1_4:4817382-4817401 | None:intergenic | 30.0% |
| TATATAGGATAGAGTCATAG+AGG | - | chr1_4:4817400-4817419 | None:intergenic | 30.0% | |
| TTGTCAAGAGCTTTCTATAT+AGG | - | chr1_4:4817415-4817434 | None:intergenic | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | - | chr1_4:4817496-4817515 | None:intergenic | 30.0% | |
| TTGAAGTGAGTATGTTAACT+AGG | - | chr1_4:4817533-4817552 | None:intergenic | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | - | chr1_4:4817750-4817769 | None:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | - | chr1_4:4817771-4817790 | None:intergenic | 30.0% | |
| ! | ATGATTTTATTGCAAGTCCA+TGG | + | chr1_4:4817775-4817794 | Msa0145160:CDS | 30.0% |
| ! | TTGAGGAAATTTTCTTCCTT+TGG | - | chr1_4:4817884-4817903 | None:intergenic | 30.0% |
| TCTCATACTAATGTCTTTCT+TGG | + | chr1_4:4818043-4818062 | Msa0145160:intron | 30.0% | |
| AAGGATAAAGATGGAGATTT+AGG | + | chr1_4:4815896-4815915 | Msa0145160:intron | 30.0% | |
| AGGATAAAGATGGAGATTTA+GGG | + | chr1_4:4815897-4815916 | Msa0145160:intron | 30.0% | |
| GAAATGAAGAATATTCCGTT+TGG | + | chr1_4:4816299-4816318 | Msa0145160:intron | 30.0% | |
| GTATGAATAGCAAGTGAAAT+CGG | - | chr1_4:4816651-4816670 | None:intergenic | 30.0% | |
| !! | GATTTCACTTGCTATTCATA+CGG | + | chr1_4:4816650-4816669 | Msa0145160:intron | 30.0% |
| !!! | TGCTTTTTTAAGAAGCCAAA+AGG | + | chr1_4:4817042-4817061 | Msa0145160:intron | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | - | chr1_4:4817121-4817140 | None:intergenic | 30.0% |
| TTGGGTATGATACTTCATAA+TGG | - | chr1_4:4817190-4817209 | None:intergenic | 30.0% | |
| TACAACATATTCTTATCGCT+AGG | - | chr1_4:4817329-4817348 | None:intergenic | 30.0% | |
| !! | AGAGGAGTATTTAAAGAAGT+TGG | - | chr1_4:4817382-4817401 | None:intergenic | 30.0% |
| TATATAGGATAGAGTCATAG+AGG | - | chr1_4:4817400-4817419 | None:intergenic | 30.0% | |
| TTGTCAAGAGCTTTCTATAT+AGG | - | chr1_4:4817415-4817434 | None:intergenic | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | - | chr1_4:4817496-4817515 | None:intergenic | 30.0% | |
| TTGAAGTGAGTATGTTAACT+AGG | - | chr1_4:4817533-4817552 | None:intergenic | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | - | chr1_4:4817750-4817769 | None:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | - | chr1_4:4817771-4817790 | None:intergenic | 30.0% | |
| ! | ATGATTTTATTGCAAGTCCA+TGG | + | chr1_4:4817775-4817794 | Msa0145160:CDS | 30.0% |
| ! | TTGAGGAAATTTTCTTCCTT+TGG | - | chr1_4:4817884-4817903 | None:intergenic | 30.0% |
| TCTCATACTAATGTCTTTCT+TGG | + | chr1_4:4818043-4818062 | Msa0145160:intron | 30.0% | |
| GGATAAAGATGGAGATTTAG+GGG | + | chr1_4:4815898-4815917 | Msa0145160:intron | 35.0% | |
| GATAAAGATGGAGATTTAGG+GGG | + | chr1_4:4815899-4815918 | Msa0145160:intron | 35.0% | |
| ATTGTGCTAACATTCAAACC+TGG | + | chr1_4:4816327-4816346 | Msa0145160:intron | 35.0% | |
| AAATGAAGTAAACACAAGCC+AGG | - | chr1_4:4816348-4816367 | None:intergenic | 35.0% | |
| GAATTAGAGAAACTGAAGAG+TGG | + | chr1_4:4816755-4816774 | Msa0145160:CDS | 35.0% | |
| TTATATGATTCCAAGCAACC+AGG | + | chr1_4:4816835-4816854 | Msa0145160:CDS | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | + | chr1_4:4816836-4816855 | Msa0145160:CDS | 35.0% | |
| !! | GTTTTGTTACACACTTACAC+TGG | - | chr1_4:4817165-4817184 | None:intergenic | 35.0% |
| GGTATGATACTTCATAATGG+TGG | - | chr1_4:4817187-4817206 | None:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | - | chr1_4:4817232-4817251 | None:intergenic | 35.0% |
| ! | ATCGATTTATGCTTCATGCA+TGG | - | chr1_4:4817293-4817312 | None:intergenic | 35.0% |
| AAGTGAGTATGTTAACTAGG+TGG | - | chr1_4:4817530-4817549 | None:intergenic | 35.0% | |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | + | chr1_4:4817865-4817884 | Msa0145160:CDS | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | - | chr1_4:4817901-4817920 | None:intergenic | 35.0% |
| GGATAAAGATGGAGATTTAG+GGG | + | chr1_4:4815898-4815917 | Msa0145160:intron | 35.0% | |
| GATAAAGATGGAGATTTAGG+GGG | + | chr1_4:4815899-4815918 | Msa0145160:intron | 35.0% | |
| ATTGTGCTAACATTCAAACC+TGG | + | chr1_4:4816327-4816346 | Msa0145160:intron | 35.0% | |
| AAATGAAGTAAACACAAGCC+AGG | - | chr1_4:4816348-4816367 | None:intergenic | 35.0% | |
| GAATTAGAGAAACTGAAGAG+TGG | + | chr1_4:4816755-4816774 | Msa0145160:CDS | 35.0% | |
| TTATATGATTCCAAGCAACC+AGG | + | chr1_4:4816835-4816854 | Msa0145160:CDS | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | + | chr1_4:4816836-4816855 | Msa0145160:CDS | 35.0% | |
| !! | GTTTTGTTACACACTTACAC+TGG | - | chr1_4:4817165-4817184 | None:intergenic | 35.0% |
| GGTATGATACTTCATAATGG+TGG | - | chr1_4:4817187-4817206 | None:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | - | chr1_4:4817232-4817251 | None:intergenic | 35.0% |
| ! | ATCGATTTATGCTTCATGCA+TGG | - | chr1_4:4817293-4817312 | None:intergenic | 35.0% |
| AAGTGAGTATGTTAACTAGG+TGG | - | chr1_4:4817530-4817549 | None:intergenic | 35.0% | |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | + | chr1_4:4817865-4817884 | Msa0145160:CDS | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | - | chr1_4:4817901-4817920 | None:intergenic | 35.0% |
| CACTAGCAATAATGGCACTT+AGG | - | chr1_4:4815987-4816006 | None:intergenic | 40.0% | |
| ! | AGTGCCATTATTGCTAGTGA+AGG | + | chr1_4:4815988-4816007 | Msa0145160:intron | 40.0% |
| ! | GTGCCATTATTGCTAGTGAA+GGG | + | chr1_4:4815989-4816008 | Msa0145160:intron | 40.0% |
| AAGCCCTTCACTAGCAATAA+TGG | - | chr1_4:4815995-4816014 | None:intergenic | 40.0% | |
| TAGAGAAACTGAAGAGTGGA+CGG | + | chr1_4:4816759-4816778 | Msa0145160:CDS | 40.0% | |
| ATATGATTCCAAGCAACCAG+GGG | + | chr1_4:4816837-4816856 | Msa0145160:CDS | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | + | chr1_4:4816860-4816879 | Msa0145160:CDS | 40.0% |
| TAGGGATATTGAGATGAACC+TGG | - | chr1_4:4816906-4816925 | None:intergenic | 40.0% | |
| AGTGACCGTATACAAACACA+CGG | + | chr1_4:4817138-4817157 | Msa0145160:intron | 40.0% | |
| TTATGCTTCATGCATGGTTG+TGG | - | chr1_4:4817287-4817306 | None:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | + | chr1_4:4817677-4817696 | Msa0145160:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | - | chr1_4:4817795-4817814 | None:intergenic | 40.0% |
| !! | AACTTGTTGTTGAGCTGTAG+GGG | - | chr1_4:4817850-4817869 | None:intergenic | 40.0% |
| !! | CAACTTGTTGTTGAGCTGTA+GGG | - | chr1_4:4817851-4817870 | None:intergenic | 40.0% |
| !! | ACAACTTGTTGTTGAGCTGT+AGG | - | chr1_4:4817852-4817871 | None:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | + | chr1_4:4817948-4817967 | Msa0145160:CDS | 40.0% |
| CACTAGCAATAATGGCACTT+AGG | - | chr1_4:4815987-4816006 | None:intergenic | 40.0% | |
| ! | AGTGCCATTATTGCTAGTGA+AGG | + | chr1_4:4815988-4816007 | Msa0145160:intron | 40.0% |
| ! | GTGCCATTATTGCTAGTGAA+GGG | + | chr1_4:4815989-4816008 | Msa0145160:intron | 40.0% |
| AAGCCCTTCACTAGCAATAA+TGG | - | chr1_4:4815995-4816014 | None:intergenic | 40.0% | |
| TAGAGAAACTGAAGAGTGGA+CGG | + | chr1_4:4816759-4816778 | Msa0145160:CDS | 40.0% | |
| ATATGATTCCAAGCAACCAG+GGG | + | chr1_4:4816837-4816856 | Msa0145160:CDS | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | + | chr1_4:4816860-4816879 | Msa0145160:CDS | 40.0% |
| TAGGGATATTGAGATGAACC+TGG | - | chr1_4:4816906-4816925 | None:intergenic | 40.0% | |
| AGTGACCGTATACAAACACA+CGG | + | chr1_4:4817138-4817157 | Msa0145160:intron | 40.0% | |
| TTATGCTTCATGCATGGTTG+TGG | - | chr1_4:4817287-4817306 | None:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | + | chr1_4:4817677-4817696 | Msa0145160:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | - | chr1_4:4817795-4817814 | None:intergenic | 40.0% |
| !! | AACTTGTTGTTGAGCTGTAG+GGG | - | chr1_4:4817850-4817869 | None:intergenic | 40.0% |
| !! | CAACTTGTTGTTGAGCTGTA+GGG | - | chr1_4:4817851-4817870 | None:intergenic | 40.0% |
| !! | ACAACTTGTTGTTGAGCTGT+AGG | - | chr1_4:4817852-4817871 | None:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | + | chr1_4:4817948-4817967 | Msa0145160:CDS | 40.0% |
| ! | GGGGGTTGATCATTCATTAG+AGG | + | chr1_4:4815917-4815936 | Msa0145160:intron | 45.0% |
| TGGCCAGTAGTAGATTCGTT+GGG | - | chr1_4:4816886-4816905 | None:intergenic | 45.0% | |
| ACACACAAGATGTGCCTAAC+AGG | + | chr1_4:4817104-4817123 | Msa0145160:intron | 45.0% | |
| CTGGACCGTGTGTTTGTATA+CGG | - | chr1_4:4817146-4817165 | None:intergenic | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | - | chr1_4:4817689-4817708 | None:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | + | chr1_4:4817687-4817706 | Msa0145160:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | + | chr1_4:4818136-4818155 | Msa0145160:CDS | 45.0% | |
| ! | GGGGGTTGATCATTCATTAG+AGG | + | chr1_4:4815917-4815936 | Msa0145160:intron | 45.0% |
| TGGCCAGTAGTAGATTCGTT+GGG | - | chr1_4:4816886-4816905 | None:intergenic | 45.0% | |
| ACACACAAGATGTGCCTAAC+AGG | + | chr1_4:4817104-4817123 | Msa0145160:intron | 45.0% | |
| CTGGACCGTGTGTTTGTATA+CGG | - | chr1_4:4817146-4817165 | None:intergenic | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | - | chr1_4:4817689-4817708 | None:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | + | chr1_4:4817687-4817706 | Msa0145160:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | + | chr1_4:4818136-4818155 | Msa0145160:CDS | 45.0% | |
| !!! | TTTTATATTTTTATTAGAAA+AGG | - | chr1_4:4816030-4816049 | None:intergenic | 5.0% |
| !! | AAAAATATAAAATAGAATAA+AGG | + | chr1_4:4816038-4816057 | Msa0145160:intron | 5.0% |
| !!! | TTTTATATTTTTATTAGAAA+AGG | - | chr1_4:4816030-4816049 | None:intergenic | 5.0% |
| !! | AAAAATATAAAATAGAATAA+AGG | + | chr1_4:4816038-4816057 | Msa0145160:intron | 5.0% |
| AAAAGAAGCCCCTGGTTGCT+TGG | - | chr1_4:4816848-4816867 | None:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | - | chr1_4:4816856-4816875 | None:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | + | chr1_4:4816856-4816875 | Msa0145160:CDS | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | + | chr1_4:4816880-4816899 | Msa0145160:CDS | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | - | chr1_4:4816887-4816906 | None:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | + | chr1_4:4816885-4816904 | Msa0145160:CDS | 50.0% | |
| TCATGCATGGTTGTGGCTGA+AGG | - | chr1_4:4817280-4817299 | None:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | + | chr1_4:4817690-4817709 | Msa0145160:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | + | chr1_4:4817697-4817716 | Msa0145160:CDS | 50.0% | |
| TGTTGTTGAGCTGTAGGGGA+TGG | - | chr1_4:4817846-4817865 | None:intergenic | 50.0% | |
| AAAAGAAGCCCCTGGTTGCT+TGG | - | chr1_4:4816848-4816867 | None:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | - | chr1_4:4816856-4816875 | None:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | + | chr1_4:4816856-4816875 | Msa0145160:CDS | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | + | chr1_4:4816880-4816899 | Msa0145160:CDS | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | - | chr1_4:4816887-4816906 | None:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | + | chr1_4:4816885-4816904 | Msa0145160:CDS | 50.0% | |
| TCATGCATGGTTGTGGCTGA+AGG | - | chr1_4:4817280-4817299 | None:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | + | chr1_4:4817690-4817709 | Msa0145160:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | + | chr1_4:4817697-4817716 | Msa0145160:CDS | 50.0% | |
| TGTTGTTGAGCTGTAGGGGA+TGG | - | chr1_4:4817846-4817865 | None:intergenic | 50.0% | |
| TTCGTTGGGCCTTCCTTTGC+TGG | - | chr1_4:4816872-4816891 | None:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | + | chr1_4:4818061-4818080 | Msa0145160:intron | 55.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | - | chr1_4:4816872-4816891 | None:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | + | chr1_4:4818061-4818080 | Msa0145160:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4815728 | 4818166 | 4815728 | ID=Msa0145160;Name=Msa0145160 |
| chr1_4 | mRNA | 4815728 | 4818166 | 4815728 | ID=Msa0145160-mRNA-1;Parent=Msa0145160;Name=Msa0145160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|1|1|4|0|175 |
| chr1_4 | exon | 4815728 | 4815733 | 4815728 | ID=Msa0145160-mRNA-1:exon:2021;Parent=Msa0145160-mRNA-1 |
| chr1_4 | exon | 4816754 | 4816906 | 4816754 | ID=Msa0145160-mRNA-1:exon:2022;Parent=Msa0145160-mRNA-1 |
| chr1_4 | exon | 4817693 | 4817969 | 4817693 | ID=Msa0145160-mRNA-1:exon:2023;Parent=Msa0145160-mRNA-1 |
| chr1_4 | exon | 4818075 | 4818166 | 4818075 | ID=Msa0145160-mRNA-1:exon:2024;Parent=Msa0145160-mRNA-1 |
| chr1_4 | CDS | 4815728 | 4815733 | 4815728 | ID=Msa0145160-mRNA-1:cds;Parent=Msa0145160-mRNA-1 |
| chr1_4 | CDS | 4816754 | 4816906 | 4816754 | ID=Msa0145160-mRNA-1:cds;Parent=Msa0145160-mRNA-1 |
| chr1_4 | CDS | 4817693 | 4817969 | 4817693 | ID=Msa0145160-mRNA-1:cds;Parent=Msa0145160-mRNA-1 |
| chr1_4 | CDS | 4818075 | 4818166 | 4818075 | ID=Msa0145160-mRNA-1:cds;Parent=Msa0145160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
