Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353750 | XP_003589180.1 | 94.767 | 172 | 9 | 0 | 1 | 172 | 3 | 174 | 1.44e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353750 | sp|Q8L8T7|COR27_ARATH | 36.471 | 170 | 97 | 4 | 7 | 165 | 47 | 216 | 1.39e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353750 | G7I3J6 | 94.767 | 172 | 9 | 0 | 1 | 172 | 3 | 174 | 6.86e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa1353750 | 0.840573 | 8.013897e-58 | -8.615850e-47 |
| Msa0023040 | Msa1353750 | 0.805639 | 1.211290e-49 | -8.615850e-47 |
| Msa0026680 | Msa1353750 | 0.873687 | 1.212408e-67 | -8.615850e-47 |
| Msa1353750 | Msa1406670 | -0.806339 | 8.629375e-50 | -8.615850e-47 |
| Msa1353750 | Msa1448870 | -0.808681 | 2.747780e-50 | -8.615850e-47 |
| Msa0605630 | Msa1353750 | 0.827637 | 1.401153e-54 | -8.615850e-47 |
| Msa0605640 | Msa1353750 | 0.821113 | 4.798818e-53 | -8.615850e-47 |
| Msa0605650 | Msa1353750 | 0.832356 | 9.905650e-56 | -8.615850e-47 |
| Msa0646580 | Msa1353750 | 0.842771 | 2.109053e-58 | -8.615850e-47 |
| Msa0686210 | Msa1353750 | 0.803926 | 2.760643e-49 | -8.615850e-47 |
| Msa0686220 | Msa1353750 | 0.832099 | 1.146434e-55 | -8.615850e-47 |
| Msa0686230 | Msa1353750 | 0.809735 | 1.633628e-50 | -8.615850e-47 |
| Msa0708930 | Msa1353750 | 0.844107 | 9.275716e-59 | -8.615850e-47 |
| Msa0717230 | Msa1353750 | -0.804481 | 2.116113e-49 | -8.615850e-47 |
| Msa0738380 | Msa1353750 | 0.832670 | 8.281049e-56 | -8.615850e-47 |
| Msa0741230 | Msa1353750 | 0.808232 | 3.426661e-50 | -8.615850e-47 |
| Msa0817730 | Msa1353750 | 0.847322 | 1.244615e-59 | -8.615850e-47 |
| Msa0818750 | Msa1353750 | 0.804386 | 2.214318e-49 | -8.615850e-47 |
| Msa0140630 | Msa1353750 | 0.844300 | 8.235223e-59 | -8.615850e-47 |
| Msa0145080 | Msa1353750 | 0.969877 | 8.997951e-131 | -8.615850e-47 |
| Msa0145160 | Msa1353750 | 0.815920 | 7.218497e-52 | -8.615850e-47 |
| Msa0156370 | Msa1353750 | 0.837462 | 5.124402e-57 | -8.615850e-47 |
| Msa0222310 | Msa1353750 | 0.808598 | 2.863379e-50 | -8.615850e-47 |
| Msa1259910 | Msa1353750 | 0.843666 | 1.217515e-58 | -8.615850e-47 |
| Msa0381500 | Msa1353750 | 0.855486 | 6.109510e-62 | -8.615850e-47 |
| Msa0387830 | Msa1353750 | 0.806446 | 8.194066e-50 | -8.615850e-47 |
| Msa0402210 | Msa1353750 | 0.854002 | 1.645152e-61 | -8.615850e-47 |
| Msa0339040 | Msa1353750 | 0.801577 | 8.434205e-49 | -8.615850e-47 |
| Msa0355140 | Msa1353750 | 0.860932 | 1.463307e-63 | -8.615850e-47 |
| Msa1130820 | Msa1353750 | -0.812425 | 4.267569e-51 | -8.615850e-47 |
| Msa1212190 | Msa1353750 | 0.844659 | 6.592334e-59 | -8.615850e-47 |
| Msa1212270 | Msa1353750 | 0.844987 | 5.379302e-59 | -8.615850e-47 |
| Msa0483770 | Msa1353750 | 0.854933 | 8.844835e-62 | -8.615850e-47 |
| Msa0519950 | Msa1353750 | 0.849671 | 2.784762e-60 | -8.615850e-47 |
| Msa0550120 | Msa1353750 | 0.816741 | 4.730026e-52 | -8.615850e-47 |
| Msa0550130 | Msa1353750 | 0.804702 | 1.903086e-49 | -8.615850e-47 |
| Msa0550150 | Msa1353750 | 0.851425 | 8.950500e-61 | -8.615850e-47 |
| Msa0574910 | Msa1353750 | 0.803701 | 3.073821e-49 | -8.615850e-47 |
| Msa0858180 | Msa1353750 | 0.849330 | 3.466417e-60 | -8.615850e-47 |
| Msa0861860 | Msa1353750 | 0.813588 | 2.372762e-51 | -8.615850e-47 |
| Msa0867720 | Msa1353750 | 0.835961 | 1.236954e-56 | -8.615850e-47 |
| Msa0867730 | Msa1353750 | 0.855915 | 4.578730e-62 | -8.615850e-47 |
| Msa0968610 | Msa1353750 | 0.857215 | 1.899690e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353750 | MtrunA17_Chr1g0153331 | 94.767 | 172 | 9 | 0 | 1 | 172 | 3 | 174 | 1.32e-123 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353750 | AT5G42900.1 | 36.471 | 170 | 97 | 4 | 7 | 165 | 47 | 216 | 1.41e-25 | 98.6 |
| Msa1353750 | AT5G42900.2 | 36.471 | 170 | 97 | 4 | 7 | 165 | 47 | 216 | 1.41e-25 | 98.6 |
| Msa1353750 | AT5G42900.3 | 37.278 | 169 | 96 | 4 | 7 | 165 | 47 | 215 | 3.20e-25 | 97.8 |
Find 28 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTTGGGCCTTCCTTTGC+TGG | 0.272512 | tig0013999:-4036 | Msa1353750:intergenic |
| TTTATCATGAAAATATGCTT+TGG | 0.399923 | tig0013999:+5377 | Msa1353750:CDS |
| GGATTAACTTTACTCATTTG+TGG | 0.403011 | tig0013999:-5190 | Msa1353750:intergenic |
| AATATGCTTTGGAGCGATAC+AGG | 0.407619 | tig0013999:+5388 | Msa1353750:CDS |
| CGCGAAACGACGAAAATCAT+TGG | 0.419427 | tig0013999:+5576 | Msa1353750:CDS |
| AAAAGAAGCCCCTGGTTGCT+TGG | 0.432229 | tig0013999:-4012 | Msa1353750:intergenic |
| AGGTTCTTCGAGGTGGTTGT+TGG | 0.465085 | tig0013999:+5140 | Msa1353750:CDS |
| GATCGATAGTGTTGAATCCA+TGG | 0.498424 | tig0013999:-5235 | Msa1353750:intergenic |
| CAACAGTTCAAGGTTCTTCG+AGG | 0.499617 | tig0013999:+5130 | Msa1353750:intron |
| TAACAACTTGTTGAGCTGTA+GGG | 0.513024 | tig0013999:-5291 | Msa1353750:intergenic |
| CTTGGCTCGTGCAGAAGTGT+CGG | 0.519163 | tig0013999:+5501 | Msa1353750:intron |
| GTAACAACTTGTTGAGCTGT+AGG | 0.525566 | tig0013999:-5292 | Msa1353750:intergenic |
| CAACGAATCTACTACTGGCC+AGG | 0.527699 | tig0013999:+4052 | Msa1353750:CDS |
| TGGCCAGTAGTAGATTCGTT+GGG | 0.558931 | tig0013999:-4050 | Msa1353750:intergenic |
| CTGGCCAGTAGTAGATTCGT+TGG | 0.560774 | tig0013999:-4051 | Msa1353750:intergenic |
| AGGCCCAACGAATCTACTAC+TGG | 0.564466 | tig0013999:+4047 | Msa1353750:CDS |
| CAGTTCAAGGTTCTTCGAGG+TGG | 0.575031 | tig0013999:+5133 | Msa1353750:intron |
| TTATATGATTCCAAGCAACC+AGG | 0.576406 | tig0013999:+4002 | Msa1353750:CDS |
| TAGAGAAACTGAGGAGTGGA+CGG | 0.579362 | tig0013999:+3926 | Msa1353750:CDS |
| AACAACTTGTTGAGCTGTAG+GGG | 0.584635 | tig0013999:-5290 | Msa1353750:intergenic |
| ATCGATAGTGTTGAATCCAT+GGG | 0.586171 | tig0013999:-5234 | Msa1353750:intergenic |
| ACTTGTTGAGCTGTAGGGGA+TGG | 0.586514 | tig0013999:-5286 | Msa1353750:intergenic |
| AAGTTGTTACTTCAAGCCAA+AGG | 0.633769 | tig0013999:+5305 | Msa1353750:CDS |
| TATATGATTCCAAGCAACCA+GGG | 0.650365 | tig0013999:+4003 | Msa1353750:CDS |
| CTTGCAATAAAATCATTGTG+TGG | 0.659878 | tig0013999:-5211 | None:intergenic |
| TCAGGGCATTAGAGAAACTG+AGG | 0.663965 | tig0013999:+3917 | None:intergenic |
| ATATGATTCCAAGCAACCAG+GGG | 0.665275 | tig0013999:+4004 | Msa1353750:CDS |
| GCATTAGAGAAACTGAGGAG+TGG | 0.668056 | tig0013999:+3922 | Msa1353750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAAATATTAAAATT+AGG | + | tig0013999:4117-4136 | Msa1353750:intron | 0.0% |
| !! | AATTATTAAATATTAAAATT+AGG | + | tig0013999:4117-4136 | Msa1353750:intron | 0.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | - | tig0013999:4225-4244 | Msa1353750:intergenic | 10.0% |
| !!! | TAGTTAAAGTTTTTTTTTTT+GGG | - | tig0013999:4524-4543 | Msa1353750:intergenic | 10.0% |
| !!! | TTAGTTAAAGTTTTTTTTTT+TGG | - | tig0013999:4525-4544 | Msa1353750:intergenic | 10.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | - | tig0013999:4225-4244 | Msa1353750:intergenic | 10.0% |
| !!! | TAGTTAAAGTTTTTTTTTTT+GGG | - | tig0013999:4524-4543 | Msa1353750:intergenic | 10.0% |
| !!! | TTAGTTAAAGTTTTTTTTTT+TGG | - | tig0013999:4525-4544 | Msa1353750:intergenic | 10.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | - | tig0013999:4091-4110 | Msa1353750:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | - | tig0013999:4092-4111 | Msa1353750:intergenic | 15.0% |
| !!! | AGTTAAAGTTTTTTTTTTTG+GGG | - | tig0013999:4523-4542 | Msa1353750:intergenic | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+TGG | + | tig0013999:4953-4972 | Msa1353750:intron | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | - | tig0013999:5436-5455 | Msa1353750:intergenic | 15.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | - | tig0013999:4091-4110 | Msa1353750:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | - | tig0013999:4092-4111 | Msa1353750:intergenic | 15.0% |
| !!! | AGTTAAAGTTTTTTTTTTTG+GGG | - | tig0013999:4523-4542 | Msa1353750:intergenic | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+TGG | + | tig0013999:4953-4972 | Msa1353750:intron | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | - | tig0013999:5436-5455 | Msa1353750:intergenic | 15.0% |
| !! | GCAAATCAAATAAAAAAATC+AGG | + | tig0013999:4387-4406 | Msa1353750:intron | 20.0% |
| !! | TACAATATATTCTTATCTCT+AGG | - | tig0013999:4463-4482 | Msa1353750:intergenic | 20.0% |
| !! | ATATATTGTAGTTGTGTATA+CGG | + | tig0013999:4473-4492 | Msa1353750:intron | 20.0% |
| !!! | AATTTGCTAGTTTAATGTTT+GGG | + | tig0013999:4721-4740 | Msa1353750:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | - | tig0013999:4764-4783 | Msa1353750:intergenic | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | - | tig0013999:4765-4784 | Msa1353750:intergenic | 20.0% |
| !!! | AAGTGTGATTTCATTTTATA+GGG | - | tig0013999:4795-4814 | Msa1353750:intergenic | 20.0% |
| !!! | AAAGTGTGATTTCATTTTAT+AGG | - | tig0013999:4796-4815 | Msa1353750:intergenic | 20.0% |
| !!! | TAAAATGAAATCACACTTTT+TGG | + | tig0013999:4797-4816 | Msa1353750:intron | 20.0% |
| !!! | TGCTAATGGAAAAATTTTAT+AGG | + | tig0013999:4892-4911 | Msa1353750:intron | 20.0% |
| !!! | GCTAATGGAAAAATTTTATA+GGG | + | tig0013999:4893-4912 | Msa1353750:intron | 20.0% |
| !! | ACAAAATTCTGAATATTTAC+AGG | + | tig0013999:4983-5002 | Msa1353750:intron | 20.0% |
| !! | CAAAATTCTGAATATTTACA+GGG | + | tig0013999:4984-5003 | Msa1353750:intron | 20.0% |
| !! | TTAAGGGTTAATTAAGTAAA+TGG | - | tig0013999:5011-5030 | Msa1353750:intergenic | 20.0% |
| !! | TTTGTGTACAAAAACATTAA+GGG | - | tig0013999:5027-5046 | Msa1353750:intergenic | 20.0% |
| !! | ATTTGTGTACAAAAACATTA+AGG | - | tig0013999:5028-5047 | Msa1353750:intergenic | 20.0% |
| !! | AAAAAAATTTCCTCAAAAAC+AGG | + | tig0013999:5328-5347 | Msa1353750:CDS | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | + | tig0013999:5377-5396 | Msa1353750:CDS | 20.0% |
| !! | GCAAATCAAATAAAAAAATC+AGG | + | tig0013999:4387-4406 | Msa1353750:intron | 20.0% |
| !! | TACAATATATTCTTATCTCT+AGG | - | tig0013999:4463-4482 | Msa1353750:intergenic | 20.0% |
| !! | ATATATTGTAGTTGTGTATA+CGG | + | tig0013999:4473-4492 | Msa1353750:intron | 20.0% |
| !!! | AATTTGCTAGTTTAATGTTT+GGG | + | tig0013999:4721-4740 | Msa1353750:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | - | tig0013999:4764-4783 | Msa1353750:intergenic | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | - | tig0013999:4765-4784 | Msa1353750:intergenic | 20.0% |
| !!! | AAGTGTGATTTCATTTTATA+GGG | - | tig0013999:4795-4814 | Msa1353750:intergenic | 20.0% |
| !!! | AAAGTGTGATTTCATTTTAT+AGG | - | tig0013999:4796-4815 | Msa1353750:intergenic | 20.0% |
| !!! | TAAAATGAAATCACACTTTT+TGG | + | tig0013999:4797-4816 | Msa1353750:intron | 20.0% |
| !!! | TGCTAATGGAAAAATTTTAT+AGG | + | tig0013999:4892-4911 | Msa1353750:intron | 20.0% |
| !!! | GCTAATGGAAAAATTTTATA+GGG | + | tig0013999:4893-4912 | Msa1353750:intron | 20.0% |
| !! | ACAAAATTCTGAATATTTAC+AGG | + | tig0013999:4983-5002 | Msa1353750:intron | 20.0% |
| !! | CAAAATTCTGAATATTTACA+GGG | + | tig0013999:4984-5003 | Msa1353750:intron | 20.0% |
| !! | TTAAGGGTTAATTAAGTAAA+TGG | - | tig0013999:5011-5030 | Msa1353750:intergenic | 20.0% |
| !! | TTTGTGTACAAAAACATTAA+GGG | - | tig0013999:5027-5046 | Msa1353750:intergenic | 20.0% |
| !! | ATTTGTGTACAAAAACATTA+AGG | - | tig0013999:5028-5047 | Msa1353750:intergenic | 20.0% |
| !! | AAAAAAATTTCCTCAAAAAC+AGG | + | tig0013999:5328-5347 | Msa1353750:CDS | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | + | tig0013999:5377-5396 | Msa1353750:CDS | 20.0% |
| !!! | TGTTTTTTTAAGAAGCCAAA+AGG | + | tig0013999:4207-4226 | Msa1353750:intron | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | - | tig0013999:4382-4401 | Msa1353750:intergenic | 25.0% |
| !!! | CAATTTGCTAGTTTAATGTT+TGG | + | tig0013999:4720-4739 | Msa1353750:intron | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | tig0013999:4828-4847 | Msa1353750:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | tig0013999:4829-4848 | Msa1353750:intron | 25.0% |
| !! | AGAATTTCCATCAACATTTT+TGG | - | tig0013999:4856-4875 | Msa1353750:intergenic | 25.0% |
| ! | ATAGAGACTAAAAATGCTAA+TGG | + | tig0013999:4878-4897 | Msa1353750:intron | 25.0% |
| !! | TGCTGATGGAAATTTTTATA+AGG | + | tig0013999:4924-4943 | Msa1353750:intron | 25.0% |
| !!! | TTGAGGAAATTTTTTTCCTT+TGG | - | tig0013999:5324-5343 | Msa1353750:intergenic | 25.0% |
| !!! | TGTTTTTTTAAGAAGCCAAA+AGG | + | tig0013999:4207-4226 | Msa1353750:intron | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | - | tig0013999:4382-4401 | Msa1353750:intergenic | 25.0% |
| !!! | CAATTTGCTAGTTTAATGTT+TGG | + | tig0013999:4720-4739 | Msa1353750:intron | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | tig0013999:4828-4847 | Msa1353750:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | tig0013999:4829-4848 | Msa1353750:intron | 25.0% |
| !! | AGAATTTCCATCAACATTTT+TGG | - | tig0013999:4856-4875 | Msa1353750:intergenic | 25.0% |
| ! | ATAGAGACTAAAAATGCTAA+TGG | + | tig0013999:4878-4897 | Msa1353750:intron | 25.0% |
| !! | TGCTGATGGAAATTTTTATA+AGG | + | tig0013999:4924-4943 | Msa1353750:intron | 25.0% |
| !!! | TTGAGGAAATTTTTTTCCTT+TGG | - | tig0013999:5324-5343 | Msa1353750:intergenic | 25.0% |
| TATGTAAGCCTAAGAAGAAA+AGG | + | tig0013999:4173-4192 | Msa1353750:intron | 30.0% | |
| ! | TTATCTCTCCTTTTCTTCTT+AGG | - | tig0013999:4184-4203 | Msa1353750:intergenic | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | - | tig0013999:4278-4297 | Msa1353750:intergenic | 30.0% |
| GGTATGATACTTTATAACAG+TGG | - | tig0013999:4336-4355 | Msa1353750:intergenic | 30.0% | |
| ATTGCATTAAGCTTCATACA+TGG | - | tig0013999:4434-4453 | Msa1353750:intergenic | 30.0% | |
| AACTAAAGAATACTCCTCTA+TGG | + | tig0013999:4539-4558 | Msa1353750:intron | 30.0% | |
| ATCACACAAATGAAAGAAGT+TGG | + | tig0013999:4595-4614 | Msa1353750:intron | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | - | tig0013999:4666-4685 | Msa1353750:intergenic | 30.0% | |
| ATTATTGTAGTATTCCACCT+AGG | + | tig0013999:4683-4702 | Msa1353750:intron | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | - | tig0013999:5193-5212 | Msa1353750:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | - | tig0013999:5214-5233 | Msa1353750:intergenic | 30.0% | |
| TCTCATACTAATGTCTTTCT+TGG | + | tig0013999:5483-5502 | Msa1353750:intron | 30.0% | |
| ! | CGAAAATCATTGGATTTTTG+AGG | + | tig0013999:5586-5605 | Msa1353750:CDS | 30.0% |
| TATGTAAGCCTAAGAAGAAA+AGG | + | tig0013999:4173-4192 | Msa1353750:intron | 30.0% | |
| ! | TTATCTCTCCTTTTCTTCTT+AGG | - | tig0013999:4184-4203 | Msa1353750:intergenic | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | - | tig0013999:4278-4297 | Msa1353750:intergenic | 30.0% |
| GGTATGATACTTTATAACAG+TGG | - | tig0013999:4336-4355 | Msa1353750:intergenic | 30.0% | |
| ATTGCATTAAGCTTCATACA+TGG | - | tig0013999:4434-4453 | Msa1353750:intergenic | 30.0% | |
| AACTAAAGAATACTCCTCTA+TGG | + | tig0013999:4539-4558 | Msa1353750:intron | 30.0% | |
| ATCACACAAATGAAAGAAGT+TGG | + | tig0013999:4595-4614 | Msa1353750:intron | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | - | tig0013999:4666-4685 | Msa1353750:intergenic | 30.0% | |
| ATTATTGTAGTATTCCACCT+AGG | + | tig0013999:4683-4702 | Msa1353750:intron | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | - | tig0013999:5193-5212 | Msa1353750:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | - | tig0013999:5214-5233 | Msa1353750:intergenic | 30.0% | |
| TCTCATACTAATGTCTTTCT+TGG | + | tig0013999:5483-5502 | Msa1353750:intron | 30.0% | |
| TTATATGATTCCAAGCAACC+AGG | + | tig0013999:4002-4021 | Msa1353750:CDS | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | + | tig0013999:4003-4022 | Msa1353750:CDS | 35.0% | |
| TAGGGATATTGAAATGAACC+TGG | - | tig0013999:4073-4092 | Msa1353750:intergenic | 35.0% | |
| GATTAACTCATCTCTGTCTT+GGG | - | tig0013999:4357-4376 | Msa1353750:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | - | tig0013999:4379-4398 | Msa1353750:intergenic | 35.0% |
| TGTCTAGACCTTTCTATATG+AGG | - | tig0013999:4571-4590 | Msa1353750:intergenic | 35.0% | |
| TTGAAGTGAGTATGTTACCT+AGG | - | tig0013999:4703-4722 | Msa1353750:intergenic | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | - | tig0013999:4824-4843 | Msa1353750:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | - | tig0013999:4825-4844 | Msa1353750:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | - | tig0013999:4838-4857 | Msa1353750:intergenic | 35.0% | |
| TTAGGGACCAAAAATGTTGA+TGG | + | tig0013999:4846-4865 | Msa1353750:intron | 35.0% | |
| ATAGGGACTAAAAATGCTGA+TGG | + | tig0013999:4910-4929 | Msa1353750:intron | 35.0% | |
| ! | ATGATTTTATTGCAAGCCCA+TGG | + | tig0013999:5218-5237 | Msa1353750:CDS | 35.0% |
| ! | ATCGATAGTGTTGAATCCAT+GGG | - | tig0013999:5237-5256 | Msa1353750:intergenic | 35.0% |
| !! | TAACAACTTGTTGAGCTGTA+GGG | - | tig0013999:5294-5313 | Msa1353750:intergenic | 35.0% |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | + | tig0013999:5305-5324 | Msa1353750:CDS | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | - | tig0013999:5341-5360 | Msa1353750:intergenic | 35.0% |
| TTATATGATTCCAAGCAACC+AGG | + | tig0013999:4002-4021 | Msa1353750:CDS | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | + | tig0013999:4003-4022 | Msa1353750:CDS | 35.0% | |
| TAGGGATATTGAAATGAACC+TGG | - | tig0013999:4073-4092 | Msa1353750:intergenic | 35.0% | |
| GATTAACTCATCTCTGTCTT+GGG | - | tig0013999:4357-4376 | Msa1353750:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | - | tig0013999:4379-4398 | Msa1353750:intergenic | 35.0% |
| TGTCTAGACCTTTCTATATG+AGG | - | tig0013999:4571-4590 | Msa1353750:intergenic | 35.0% | |
| TTGAAGTGAGTATGTTACCT+AGG | - | tig0013999:4703-4722 | Msa1353750:intergenic | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | - | tig0013999:4824-4843 | Msa1353750:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | - | tig0013999:4825-4844 | Msa1353750:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | - | tig0013999:4838-4857 | Msa1353750:intergenic | 35.0% | |
| TTAGGGACCAAAAATGTTGA+TGG | + | tig0013999:4846-4865 | Msa1353750:intron | 35.0% | |
| ATAGGGACTAAAAATGCTGA+TGG | + | tig0013999:4910-4929 | Msa1353750:intron | 35.0% | |
| ! | ATGATTTTATTGCAAGCCCA+TGG | + | tig0013999:5218-5237 | Msa1353750:CDS | 35.0% |
| ! | ATCGATAGTGTTGAATCCAT+GGG | - | tig0013999:5237-5256 | Msa1353750:intergenic | 35.0% |
| !! | TAACAACTTGTTGAGCTGTA+GGG | - | tig0013999:5294-5313 | Msa1353750:intergenic | 35.0% |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | + | tig0013999:5305-5324 | Msa1353750:CDS | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | - | tig0013999:5341-5360 | Msa1353750:intergenic | 35.0% |
| ATATGATTCCAAGCAACCAG+GGG | + | tig0013999:4004-4023 | Msa1353750:CDS | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | + | tig0013999:4027-4046 | Msa1353750:CDS | 40.0% |
| AGTGACCGTATACAAACACA+CGG | + | tig0013999:4295-4314 | Msa1353750:intron | 40.0% | |
| CTGTACCGTGTGTTTGTATA+CGG | - | tig0013999:4303-4322 | Msa1353750:intergenic | 40.0% | |
| TATACAAACACACGGTACAG+CGG | + | tig0013999:4303-4322 | Msa1353750:intron | 40.0% | |
| GGATTAACTCATCTCTGTCT+TGG | - | tig0013999:4358-4377 | Msa1353750:intergenic | 40.0% | |
| AAGTGAGTATGTTACCTAGG+TGG | - | tig0013999:4700-4719 | Msa1353750:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | + | tig0013999:5120-5139 | Msa1353750:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | - | tig0013999:5238-5257 | Msa1353750:intergenic | 40.0% |
| !! | AACAACTTGTTGAGCTGTAG+GGG | - | tig0013999:5293-5312 | Msa1353750:intergenic | 40.0% |
| !! | GTAACAACTTGTTGAGCTGT+AGG | - | tig0013999:5295-5314 | Msa1353750:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | + | tig0013999:5388-5407 | Msa1353750:CDS | 40.0% |
| ATATGATTCCAAGCAACCAG+GGG | + | tig0013999:4004-4023 | Msa1353750:CDS | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | + | tig0013999:4027-4046 | Msa1353750:CDS | 40.0% |
| AGTGACCGTATACAAACACA+CGG | + | tig0013999:4295-4314 | Msa1353750:intron | 40.0% | |
| CTGTACCGTGTGTTTGTATA+CGG | - | tig0013999:4303-4322 | Msa1353750:intergenic | 40.0% | |
| TATACAAACACACGGTACAG+CGG | + | tig0013999:4303-4322 | Msa1353750:intron | 40.0% | |
| GGATTAACTCATCTCTGTCT+TGG | - | tig0013999:4358-4377 | Msa1353750:intergenic | 40.0% | |
| AAGTGAGTATGTTACCTAGG+TGG | - | tig0013999:4700-4719 | Msa1353750:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | + | tig0013999:5120-5139 | Msa1353750:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | - | tig0013999:5238-5257 | Msa1353750:intergenic | 40.0% |
| !! | AACAACTTGTTGAGCTGTAG+GGG | - | tig0013999:5293-5312 | Msa1353750:intergenic | 40.0% |
| !! | GTAACAACTTGTTGAGCTGT+AGG | - | tig0013999:5295-5314 | Msa1353750:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | + | tig0013999:5388-5407 | Msa1353750:CDS | 40.0% |
| GCATTAGAGAAACTGAGGAG+TGG | + | tig0013999:3922-3941 | Msa1353750:CDS | 45.0% | |
| TAGAGAAACTGAGGAGTGGA+CGG | + | tig0013999:3926-3945 | Msa1353750:CDS | 45.0% | |
| TGGCCAGTAGTAGATTCGTT+GGG | - | tig0013999:4053-4072 | Msa1353750:intergenic | 45.0% | |
| CACATCTTGTGTGTTTGACG+GGG | - | tig0013999:4255-4274 | Msa1353750:intergenic | 45.0% | |
| GCACATCTTGTGTGTTTGAC+GGG | - | tig0013999:4256-4275 | Msa1353750:intergenic | 45.0% | |
| GGCACATCTTGTGTGTTTGA+CGG | - | tig0013999:4257-4276 | Msa1353750:intergenic | 45.0% | |
| ACACACAAGATGTGCCTAAC+AGG | + | tig0013999:4261-4280 | Msa1353750:intron | 45.0% | |
| ATATGAGGACAGAGCCATAG+AGG | - | tig0013999:4556-4575 | Msa1353750:intergenic | 45.0% | |
| GGCTCTGTCCTCATATAGAA+AGG | + | tig0013999:4560-4579 | Msa1353750:intron | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | - | tig0013999:5132-5151 | Msa1353750:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | + | tig0013999:5130-5149 | Msa1353750:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | + | tig0013999:5576-5595 | Msa1353750:CDS | 45.0% | |
| GCATTAGAGAAACTGAGGAG+TGG | + | tig0013999:3922-3941 | Msa1353750:CDS | 45.0% | |
| TAGAGAAACTGAGGAGTGGA+CGG | + | tig0013999:3926-3945 | Msa1353750:CDS | 45.0% | |
| TGGCCAGTAGTAGATTCGTT+GGG | - | tig0013999:4053-4072 | Msa1353750:intergenic | 45.0% | |
| CACATCTTGTGTGTTTGACG+GGG | - | tig0013999:4255-4274 | Msa1353750:intergenic | 45.0% | |
| GCACATCTTGTGTGTTTGAC+GGG | - | tig0013999:4256-4275 | Msa1353750:intergenic | 45.0% | |
| GGCACATCTTGTGTGTTTGA+CGG | - | tig0013999:4257-4276 | Msa1353750:intergenic | 45.0% | |
| ACACACAAGATGTGCCTAAC+AGG | + | tig0013999:4261-4280 | Msa1353750:intron | 45.0% | |
| ATATGAGGACAGAGCCATAG+AGG | - | tig0013999:4556-4575 | Msa1353750:intergenic | 45.0% | |
| GGCTCTGTCCTCATATAGAA+AGG | + | tig0013999:4560-4579 | Msa1353750:intron | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | - | tig0013999:5132-5151 | Msa1353750:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | + | tig0013999:5130-5149 | Msa1353750:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | + | tig0013999:5576-5595 | Msa1353750:CDS | 45.0% | |
| AAAAGAAGCCCCTGGTTGCT+TGG | - | tig0013999:4015-4034 | Msa1353750:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | - | tig0013999:4023-4042 | Msa1353750:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | + | tig0013999:4023-4042 | Msa1353750:CDS | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | + | tig0013999:4047-4066 | Msa1353750:CDS | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | - | tig0013999:4054-4073 | Msa1353750:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | + | tig0013999:4052-4071 | Msa1353750:CDS | 50.0% | |
| TCATACATGGTCGTCGCTGA+AGG | - | tig0013999:4421-4440 | Msa1353750:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | + | tig0013999:5133-5152 | Msa1353750:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | + | tig0013999:5140-5159 | Msa1353750:CDS | 50.0% | |
| ! | ACTTGTTGAGCTGTAGGGGA+TGG | - | tig0013999:5289-5308 | Msa1353750:intergenic | 50.0% |
| AAAAGAAGCCCCTGGTTGCT+TGG | - | tig0013999:4015-4034 | Msa1353750:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | - | tig0013999:4023-4042 | Msa1353750:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | + | tig0013999:4023-4042 | Msa1353750:CDS | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | + | tig0013999:4047-4066 | Msa1353750:CDS | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | - | tig0013999:4054-4073 | Msa1353750:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | + | tig0013999:4052-4071 | Msa1353750:CDS | 50.0% | |
| TCATACATGGTCGTCGCTGA+AGG | - | tig0013999:4421-4440 | Msa1353750:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | + | tig0013999:5133-5152 | Msa1353750:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | + | tig0013999:5140-5159 | Msa1353750:CDS | 50.0% | |
| ! | ACTTGTTGAGCTGTAGGGGA+TGG | - | tig0013999:5289-5308 | Msa1353750:intergenic | 50.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | - | tig0013999:4039-4058 | Msa1353750:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | + | tig0013999:5501-5520 | Msa1353750:intron | 55.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | - | tig0013999:4039-4058 | Msa1353750:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | + | tig0013999:5501-5520 | Msa1353750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013999 | gene | 3921 | 5606 | 3921 | ID=Msa1353750;Name=Msa1353750 |
| tig0013999 | mRNA | 3921 | 5606 | 3921 | ID=Msa1353750-mRNA-1;Parent=Msa1353750;Name=Msa1353750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|0.66|3|0|172 |
| tig0013999 | exon | 3921 | 4073 | 3921 | ID=Msa1353750-mRNA-1:exon:8785;Parent=Msa1353750-mRNA-1 |
| tig0013999 | exon | 5136 | 5409 | 5136 | ID=Msa1353750-mRNA-1:exon:8786;Parent=Msa1353750-mRNA-1 |
| tig0013999 | exon | 5515 | 5606 | 5515 | ID=Msa1353750-mRNA-1:exon:8787;Parent=Msa1353750-mRNA-1 |
| tig0013999 | CDS | 3921 | 4073 | 3921 | ID=Msa1353750-mRNA-1:cds;Parent=Msa1353750-mRNA-1 |
| tig0013999 | CDS | 5136 | 5409 | 5136 | ID=Msa1353750-mRNA-1:cds;Parent=Msa1353750-mRNA-1 |
| tig0013999 | CDS | 5515 | 5606 | 5515 | ID=Msa1353750-mRNA-1:cds;Parent=Msa1353750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
