Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026680 | XP_003589180.1 | 94.253 | 174 | 10 | 0 | 1 | 174 | 1 | 174 | 2.52e-120 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026680 | sp|Q8L8T7|COR27_ARATH | 36.471 | 170 | 97 | 4 | 9 | 167 | 47 | 216 | 1.99e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0026680 | 0.853839 | 1.832830e-61 | -8.615850e-47 |
| Msa0023010 | Msa0026680 | 0.822019 | 2.962558e-53 | -8.615850e-47 |
| Msa0023040 | Msa0026680 | 0.818049 | 2.400544e-52 | -8.615850e-47 |
| Msa0023050 | Msa0026680 | 0.805882 | 1.076956e-49 | -8.615850e-47 |
| Msa0026680 | Msa0118790 | 0.830419 | 2.968148e-55 | -8.615850e-47 |
| Msa0026680 | Msa0140630 | 0.837329 | 5.544194e-57 | -8.615850e-47 |
| Msa0026680 | Msa0145080 | 0.886483 | 3.289448e-72 | -8.615850e-47 |
| Msa0026680 | Msa0145160 | 0.919632 | 3.530559e-87 | -8.615850e-47 |
| Msa0026680 | Msa0156370 | 0.855614 | 5.604831e-62 | -8.615850e-47 |
| Msa0026680 | Msa0162120 | 0.832336 | 1.002054e-55 | -8.615850e-47 |
| Msa0026680 | Msa0162130 | 0.810608 | 1.059179e-50 | -8.615850e-47 |
| Msa0026680 | Msa0355140 | 0.853462 | 2.352182e-61 | -8.615850e-47 |
| Msa0026680 | Msa0381500 | 0.846984 | 1.540448e-59 | -8.615850e-47 |
| Msa0026680 | Msa0402210 | 0.854175 | 1.466332e-61 | -8.615850e-47 |
| Msa0026680 | Msa0469560 | -0.805602 | 1.233146e-49 | -8.615850e-47 |
| Msa0026680 | Msa0483770 | 0.851523 | 8.397151e-61 | -8.615850e-47 |
| Msa0026680 | Msa0515270 | -0.806218 | 9.151967e-50 | -8.615850e-47 |
| Msa0026680 | Msa0519950 | 0.836113 | 1.131677e-56 | -8.615850e-47 |
| Msa0026680 | Msa0550120 | 0.835265 | 1.856038e-56 | -8.615850e-47 |
| Msa0026680 | Msa0550150 | 0.834274 | 3.294796e-56 | -8.615850e-47 |
| Msa0026680 | Msa0604010 | 0.803151 | 3.996859e-49 | -8.615850e-47 |
| Msa0026680 | Msa0605630 | 0.830487 | 2.856057e-55 | -8.615850e-47 |
| Msa0026680 | Msa0605640 | 0.809251 | 2.075420e-50 | -8.615850e-47 |
| Msa0026680 | Msa0605650 | 0.846829 | 1.698003e-59 | -8.615850e-47 |
| Msa0026680 | Msa0620890 | 0.801368 | 9.305726e-49 | -8.615850e-47 |
| Msa0026680 | Msa0646580 | 0.848138 | 7.418635e-60 | -8.615850e-47 |
| Msa0026680 | Msa0686210 | 0.824984 | 6.000556e-54 | -8.615850e-47 |
| Msa0026680 | Msa0686220 | 0.824004 | 1.020683e-53 | -8.615850e-47 |
| Msa0026680 | Msa0708930 | 0.842727 | 2.166611e-58 | -8.615850e-47 |
| Msa0026680 | Msa0717230 | -0.804835 | 1.784725e-49 | -8.615850e-47 |
| Msa0026680 | Msa0738380 | 0.871518 | 6.428984e-67 | -8.615850e-47 |
| Msa0026680 | Msa0741230 | 0.818769 | 1.648570e-52 | -8.615850e-47 |
| Msa0026680 | Msa0764680 | -0.809060 | 2.279855e-50 | -8.615850e-47 |
| Msa0026680 | Msa0784860 | 0.828339 | 9.501021e-55 | -8.615850e-47 |
| Msa0026680 | Msa0799680 | -0.806019 | 1.008041e-49 | -8.615850e-47 |
| Msa0026680 | Msa0817730 | 0.858374 | 8.608924e-63 | -8.615850e-47 |
| Msa0026680 | Msa0818750 | 0.835421 | 1.694240e-56 | -8.615850e-47 |
| Msa0026680 | Msa0858180 | 0.856284 | 3.569957e-62 | -8.615850e-47 |
| Msa0026680 | Msa0861860 | 0.826177 | 3.130513e-54 | -8.615850e-47 |
| Msa0026680 | Msa0867720 | 0.811288 | 7.546106e-51 | -8.615850e-47 |
| Msa0026680 | Msa0867730 | 0.849610 | 2.894989e-60 | -8.615850e-47 |
| Msa0026680 | Msa0968610 | 0.854899 | 9.050995e-62 | -8.615850e-47 |
| Msa0026680 | Msa0982130 | 0.811412 | 7.090958e-51 | -8.615850e-47 |
| Msa0026680 | Msa1030620 | 0.804061 | 2.588153e-49 | -8.615850e-47 |
| Msa0026680 | Msa1212190 | 0.839058 | 1.988535e-57 | -8.615850e-47 |
| Msa0026680 | Msa1212270 | 0.837851 | 4.071731e-57 | -8.615850e-47 |
| Msa0026680 | Msa1259910 | 0.835962 | 1.235935e-56 | -8.615850e-47 |
| Msa0026680 | Msa1280340 | 0.801498 | 8.751834e-49 | -8.615850e-47 |
| Msa0026680 | Msa1353750 | 0.873687 | 1.212408e-67 | -8.615850e-47 |
| Msa0026680 | Msa1384360 | -0.800871 | 1.176030e-48 | -8.615850e-47 |
| Msa0026680 | Msa1385770 | 0.804453 | 2.144451e-49 | -8.615850e-47 |
| Msa0026680 | Msa1409240 | 0.802557 | 5.302904e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026680 | MtrunA17_Chr1g0153331 | 94.253 | 174 | 10 | 0 | 1 | 174 | 1 | 174 | 2.32e-124 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026680 | AT5G42900.1 | 36.471 | 170 | 97 | 4 | 9 | 167 | 47 | 216 | 2.03e-25 | 98.6 |
| Msa0026680 | AT5G42900.2 | 36.471 | 170 | 97 | 4 | 9 | 167 | 47 | 216 | 2.03e-25 | 98.6 |
| Msa0026680 | AT5G42900.3 | 37.278 | 169 | 96 | 4 | 9 | 167 | 47 | 215 | 4.39e-25 | 97.4 |
Find 26 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTTGGGCCTTCCTTTGC+TGG | 0.272512 | 1_1:+50629927 | None:intergenic |
| TTTATCATGAAAATATGCTT+TGG | 0.399923 | 1_1:-50628989 | Msa0026680:CDS |
| GGATTAACTTTACTCATTTG+TGG | 0.403011 | 1_1:+50629176 | None:intergenic |
| AATATGCTTTGGAGCGATAC+AGG | 0.407619 | 1_1:-50628978 | Msa0026680:intron |
| CGCGAAACGACGAAAATCAT+TGG | 0.419427 | 1_1:-50628790 | Msa0026680:CDS |
| AAAAGAAGCCCCTGGTTGCT+TGG | 0.432229 | 1_1:+50629951 | None:intergenic |
| AGGTTCTTCGAGGTGGTTGT+TGG | 0.465085 | 1_1:-50629226 | Msa0026680:CDS |
| CAACAGTTCAAGGTTCTTCG+AGG | 0.499617 | 1_1:-50629236 | Msa0026680:intron |
| TAACAACTTGTTGAGCTGTA+GGG | 0.513024 | 1_1:+50629075 | None:intergenic |
| CTTGGCTCGTGCAGAAGTGT+CGG | 0.519163 | 1_1:-50628865 | Msa0026680:intron |
| GTAACAACTTGTTGAGCTGT+AGG | 0.525566 | 1_1:+50629074 | None:intergenic |
| CAACGAATCTACTACTGGCC+AGG | 0.527699 | 1_1:-50629911 | Msa0026680:intron |
| GATCGATAGTGTTGAATCCA+TGG | 0.532050 | 1_1:+50629131 | None:intergenic |
| TGGCCAGTAGTAGATTCGTT+GGG | 0.558931 | 1_1:+50629913 | None:intergenic |
| CTGGCCAGTAGTAGATTCGT+TGG | 0.560774 | 1_1:+50629912 | None:intergenic |
| AGGCCCAACGAATCTACTAC+TGG | 0.564466 | 1_1:-50629916 | Msa0026680:CDS |
| CAGTTCAAGGTTCTTCGAGG+TGG | 0.575031 | 1_1:-50629233 | Msa0026680:CDS |
| TTATATGATTCCAAGCAACC+AGG | 0.576406 | 1_1:-50629961 | Msa0026680:CDS |
| AACAACTTGTTGAGCTGTAG+GGG | 0.584635 | 1_1:+50629076 | None:intergenic |
| ACTTGTTGAGCTGTAGGGGA+TGG | 0.586514 | 1_1:+50629080 | None:intergenic |
| TAGAGAAACTGAAGAGTGGA+CGG | 0.591236 | 1_1:-50630037 | Msa0026680:CDS |
| AAGTTGTTACTTCAAGCCAA+AGG | 0.633769 | 1_1:-50629061 | Msa0026680:CDS |
| TATATGATTCCAAGCAACCA+GGG | 0.650365 | 1_1:-50629960 | Msa0026680:CDS |
| GAATTAGAGAAACTGAAGAG+TGG | 0.658510 | 1_1:-50630041 | Msa0026680:CDS |
| CTTGCAATAAAATCATTGTG+TGG | 0.659878 | 1_1:+50629155 | None:intergenic |
| ATATGATTCCAAGCAACCAG+GGG | 0.665275 | 1_1:-50629959 | Msa0026680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAAATATTAAAATT+AGG | - | chr1_1:50630004-50630023 | Msa0026680:CDS | 0.0% |
| !! | AATTATTAAATATTAAAATT+AGG | - | chr1_1:50630004-50630023 | Msa0026680:CDS | 0.0% |
| !! | AAAAATAAAATAAAATCATG+TGG | + | chr1_1:50628869-50628888 | None:intergenic | 10.0% |
| !! | TTTATATATGCTTAATATTA+AGG | - | chr1_1:50628931-50628950 | Msa0026680:intron | 10.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | + | chr1_1:50630114-50630133 | None:intergenic | 10.0% |
| !! | CAAATAAAAAAAAAAAAATC+AGG | - | chr1_1:50630300-50630319 | Msa0026680:intron | 10.0% |
| !! | AAAAATAAAATAAAATCATG+TGG | + | chr1_1:50628869-50628888 | None:intergenic | 10.0% |
| !! | TTTATATATGCTTAATATTA+AGG | - | chr1_1:50628931-50628950 | Msa0026680:intron | 10.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | + | chr1_1:50630114-50630133 | None:intergenic | 10.0% |
| !! | CAAATAAAAAAAAAAAAATC+AGG | - | chr1_1:50630300-50630319 | Msa0026680:intron | 10.0% |
| !! | AAATATCTAAGAAACATTTA+GGG | + | chr1_1:50628811-50628830 | None:intergenic | 15.0% |
| !! | AAAATATCTAAGAAACATTT+AGG | + | chr1_1:50628812-50628831 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCAGTAGATTTAA+AGG | - | chr1_1:50629264-50629283 | Msa0026680:intron | 15.0% |
| !!! | TATGAATAGTATGTAAATTT+TGG | - | chr1_1:50629675-50629694 | Msa0026680:intron | 15.0% |
| !!! | ATGAATAGTATGTAAATTTT+GGG | - | chr1_1:50629676-50629695 | Msa0026680:intron | 15.0% |
| !!! | ATTTGTTATGAAAAATTATC+AGG | - | chr1_1:50629786-50629805 | Msa0026680:intron | 15.0% |
| !!! | TTTGTTATGAAAAATTATCA+GGG | - | chr1_1:50629787-50629806 | Msa0026680:intron | 15.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | + | chr1_1:50629978-50629997 | None:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | + | chr1_1:50629979-50629998 | None:intergenic | 15.0% |
| !!! | GTGTTTTTTTTTTTTTTTGA+GGG | + | chr1_1:50630144-50630163 | None:intergenic | 15.0% |
| !!! | TGTGTTTTTTTTTTTTTTTG+AGG | + | chr1_1:50630145-50630164 | None:intergenic | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | + | chr1_1:50630920-50630939 | None:intergenic | 15.0% |
| !! | AAATATCTAAGAAACATTTA+GGG | + | chr1_1:50628811-50628830 | None:intergenic | 15.0% |
| !! | AAAATATCTAAGAAACATTT+AGG | + | chr1_1:50628812-50628831 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCAGTAGATTTAA+AGG | - | chr1_1:50629264-50629283 | Msa0026680:intron | 15.0% |
| !!! | TATGAATAGTATGTAAATTT+TGG | - | chr1_1:50629675-50629694 | Msa0026680:intron | 15.0% |
| !!! | ATGAATAGTATGTAAATTTT+GGG | - | chr1_1:50629676-50629695 | Msa0026680:intron | 15.0% |
| !!! | ATTTGTTATGAAAAATTATC+AGG | - | chr1_1:50629786-50629805 | Msa0026680:intron | 15.0% |
| !!! | TTTGTTATGAAAAATTATCA+GGG | - | chr1_1:50629787-50629806 | Msa0026680:intron | 15.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | + | chr1_1:50629978-50629997 | None:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | + | chr1_1:50629979-50629998 | None:intergenic | 15.0% |
| !!! | GTGTTTTTTTTTTTTTTTGA+GGG | + | chr1_1:50630144-50630163 | None:intergenic | 15.0% |
| !!! | TGTGTTTTTTTTTTTTTTTG+AGG | + | chr1_1:50630145-50630164 | None:intergenic | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | + | chr1_1:50630920-50630939 | None:intergenic | 15.0% |
| !! | TGTAAAAACTAAAAACACAA+AGG | + | chr1_1:50628846-50628865 | None:intergenic | 20.0% |
| !! | CTTAATATTAAGGATAAAGA+TGG | - | chr1_1:50628941-50628960 | Msa0026680:intron | 20.0% |
| !!! | ACTTCATTTTGATAAATAAC+TGG | - | chr1_1:50629413-50629432 | Msa0026680:intron | 20.0% |
| !! | TACAAATAAATATCTACCAT+AGG | - | chr1_1:50629594-50629613 | Msa0026680:intron | 20.0% |
| !! | ATAACAAATAAACATTTAGC+TGG | + | chr1_1:50629775-50629794 | None:intergenic | 20.0% |
| !! | TTAATTCATCTCTTTATCTT+GGG | + | chr1_1:50630262-50630281 | None:intergenic | 20.0% |
| !! | ATTAATTCATCTCTTTATCT+TGG | + | chr1_1:50630263-50630282 | None:intergenic | 20.0% |
| !! | AAAAAAATTTCCTCAAAAAC+AGG | - | chr1_1:50630812-50630831 | Msa0026680:intron | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | - | chr1_1:50630861-50630880 | Msa0026680:intron | 20.0% |
| !! | TGTAAAAACTAAAAACACAA+AGG | + | chr1_1:50628846-50628865 | None:intergenic | 20.0% |
| !! | CTTAATATTAAGGATAAAGA+TGG | - | chr1_1:50628941-50628960 | Msa0026680:intron | 20.0% |
| !!! | ACTTCATTTTGATAAATAAC+TGG | - | chr1_1:50629413-50629432 | Msa0026680:intron | 20.0% |
| !! | TACAAATAAATATCTACCAT+AGG | - | chr1_1:50629594-50629613 | Msa0026680:intron | 20.0% |
| !! | ATAACAAATAAACATTTAGC+TGG | + | chr1_1:50629775-50629794 | None:intergenic | 20.0% |
| !! | TTAATTCATCTCTTTATCTT+GGG | + | chr1_1:50630262-50630281 | None:intergenic | 20.0% |
| !! | ATTAATTCATCTCTTTATCT+TGG | + | chr1_1:50630263-50630282 | None:intergenic | 20.0% |
| !! | AAAAAAATTTCCTCAAAAAC+AGG | - | chr1_1:50630812-50630831 | Msa0026680:intron | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | - | chr1_1:50630861-50630880 | Msa0026680:intron | 20.0% |
| !!! | TATTTTGAGAGCAATAAAGA+TGG | - | chr1_1:50629119-50629138 | Msa0026680:CDS | 25.0% |
| ! | TTAGCACAATAAAAACCAAA+CGG | + | chr1_1:50629371-50629390 | None:intergenic | 25.0% |
| !! | ATCTATTTGCTAAATTCCTA+TGG | + | chr1_1:50629613-50629632 | None:intergenic | 25.0% |
| !!! | ATCTTATTTTTGCAAGTAGT+TGG | - | chr1_1:50629637-50629656 | Msa0026680:intron | 25.0% |
| ! | AAATGCAGAAATGATCTTAT+TGG | - | chr1_1:50629742-50629761 | Msa0026680:intron | 25.0% |
| ! | AATGCAGAAATGATCTTATT+GGG | - | chr1_1:50629743-50629762 | Msa0026680:intron | 25.0% |
| ! | TATGTAAGCCTAAGAAAAAA+AGG | - | chr1_1:50630060-50630079 | Msa0026680:intron | 25.0% |
| !!! | TTATCTCTCCTTTTTTTCTT+AGG | + | chr1_1:50630071-50630090 | None:intergenic | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | + | chr1_1:50630289-50630308 | None:intergenic | 25.0% |
| !!! | TTGAGGAAATTTTTTTCCTT+TGG | + | chr1_1:50630808-50630827 | None:intergenic | 25.0% |
| !!! | TATTTTGAGAGCAATAAAGA+TGG | - | chr1_1:50629119-50629138 | Msa0026680:CDS | 25.0% |
| ! | TTAGCACAATAAAAACCAAA+CGG | + | chr1_1:50629371-50629390 | None:intergenic | 25.0% |
| !! | ATCTATTTGCTAAATTCCTA+TGG | + | chr1_1:50629613-50629632 | None:intergenic | 25.0% |
| !!! | ATCTTATTTTTGCAAGTAGT+TGG | - | chr1_1:50629637-50629656 | Msa0026680:intron | 25.0% |
| ! | AAATGCAGAAATGATCTTAT+TGG | - | chr1_1:50629742-50629761 | Msa0026680:intron | 25.0% |
| ! | AATGCAGAAATGATCTTATT+GGG | - | chr1_1:50629743-50629762 | Msa0026680:intron | 25.0% |
| ! | TATGTAAGCCTAAGAAAAAA+AGG | - | chr1_1:50630060-50630079 | Msa0026680:intron | 25.0% |
| !!! | TTATCTCTCCTTTTTTTCTT+AGG | + | chr1_1:50630071-50630090 | None:intergenic | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | + | chr1_1:50630289-50630308 | None:intergenic | 25.0% |
| !!! | TTGAGGAAATTTTTTTCCTT+TGG | + | chr1_1:50630808-50630827 | None:intergenic | 25.0% |
| AAGGATAAAGATGGAGATTT+AGG | - | chr1_1:50628950-50628969 | Msa0026680:intron | 30.0% | |
| AGGATAAAGATGGAGATTTA+GGG | - | chr1_1:50628951-50628970 | Msa0026680:intron | 30.0% | |
| GAAATGAAGAATATTCCGTT+TGG | - | chr1_1:50629353-50629372 | Msa0026680:intron | 30.0% | |
| GTATGAATAGCAAGTGAAAT+CGG | + | chr1_1:50629705-50629724 | None:intergenic | 30.0% | |
| !! | GATTTCACTTGCTATTCATA+CGG | - | chr1_1:50629704-50629723 | Msa0026680:intron | 30.0% |
| !!! | TGCTTTTTTAAGAAGCCAAA+AGG | - | chr1_1:50630096-50630115 | Msa0026680:intron | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | + | chr1_1:50630175-50630194 | None:intergenic | 30.0% |
| TTGGGTATGATACTTCATAA+TGG | + | chr1_1:50630244-50630263 | None:intergenic | 30.0% | |
| ATGCAAATATTCTTATCGCT+AGG | + | chr1_1:50630383-50630402 | None:intergenic | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | + | chr1_1:50630423-50630442 | None:intergenic | 30.0% | |
| TTGAAGTGAGTATGTTAACT+AGG | + | chr1_1:50630460-50630479 | None:intergenic | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | + | chr1_1:50630677-50630696 | None:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | + | chr1_1:50630698-50630717 | None:intergenic | 30.0% | |
| ! | ATGATTTTATTGCAAGTCCA+TGG | - | chr1_1:50630702-50630721 | Msa0026680:intron | 30.0% |
| TCTCATACTAATGTCTTTCT+TGG | - | chr1_1:50630967-50630986 | Msa0026680:intron | 30.0% | |
| AAGGATAAAGATGGAGATTT+AGG | - | chr1_1:50628950-50628969 | Msa0026680:intron | 30.0% | |
| AGGATAAAGATGGAGATTTA+GGG | - | chr1_1:50628951-50628970 | Msa0026680:intron | 30.0% | |
| GAAATGAAGAATATTCCGTT+TGG | - | chr1_1:50629353-50629372 | Msa0026680:intron | 30.0% | |
| GTATGAATAGCAAGTGAAAT+CGG | + | chr1_1:50629705-50629724 | None:intergenic | 30.0% | |
| !! | GATTTCACTTGCTATTCATA+CGG | - | chr1_1:50629704-50629723 | Msa0026680:intron | 30.0% |
| !!! | TGCTTTTTTAAGAAGCCAAA+AGG | - | chr1_1:50630096-50630115 | Msa0026680:intron | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | + | chr1_1:50630175-50630194 | None:intergenic | 30.0% |
| TTGGGTATGATACTTCATAA+TGG | + | chr1_1:50630244-50630263 | None:intergenic | 30.0% | |
| ATGCAAATATTCTTATCGCT+AGG | + | chr1_1:50630383-50630402 | None:intergenic | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | + | chr1_1:50630423-50630442 | None:intergenic | 30.0% | |
| TTGAAGTGAGTATGTTAACT+AGG | + | chr1_1:50630460-50630479 | None:intergenic | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | + | chr1_1:50630677-50630696 | None:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | + | chr1_1:50630698-50630717 | None:intergenic | 30.0% | |
| ! | ATGATTTTATTGCAAGTCCA+TGG | - | chr1_1:50630702-50630721 | Msa0026680:intron | 30.0% |
| TCTCATACTAATGTCTTTCT+TGG | - | chr1_1:50630967-50630986 | Msa0026680:intron | 30.0% | |
| GGATAAAGATGGAGATTTAG+GGG | - | chr1_1:50628952-50628971 | Msa0026680:intron | 35.0% | |
| GATAAAGATGGAGATTTAGG+GGG | - | chr1_1:50628953-50628972 | Msa0026680:intron | 35.0% | |
| CACTAGCAATAATAGCACTT+AGG | + | chr1_1:50629041-50629060 | None:intergenic | 35.0% | |
| ! | AGTGCTATTATTGCTAGTGA+AGG | - | chr1_1:50629042-50629061 | Msa0026680:CDS | 35.0% |
| ! | GTGCTATTATTGCTAGTGAA+GGG | - | chr1_1:50629043-50629062 | Msa0026680:CDS | 35.0% |
| ATTGTGCTAACATTCAAACC+TGG | - | chr1_1:50629381-50629400 | Msa0026680:intron | 35.0% | |
| AAATGAAGTAAACACAAGCC+AGG | + | chr1_1:50629402-50629421 | None:intergenic | 35.0% | |
| GAATTAGAGAAACTGAAGAG+TGG | - | chr1_1:50629809-50629828 | Msa0026680:intron | 35.0% | |
| TTATATGATTCCAAGCAACC+AGG | - | chr1_1:50629889-50629908 | Msa0026680:intron | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | - | chr1_1:50629890-50629909 | Msa0026680:intron | 35.0% | |
| !! | GTTTTGTTACACACTTACAC+TGG | + | chr1_1:50630219-50630238 | None:intergenic | 35.0% |
| GGTATGATACTTCATAATGG+TGG | + | chr1_1:50630241-50630260 | None:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | + | chr1_1:50630286-50630305 | None:intergenic | 35.0% |
| ! | ATCGATTTATGCTTCATGCA+TGG | + | chr1_1:50630347-50630366 | None:intergenic | 35.0% |
| AAGTGAGTATGTTAACTAGG+TGG | + | chr1_1:50630457-50630476 | None:intergenic | 35.0% | |
| !! | TAACAACTTGTTGAGCTGTA+GGG | + | chr1_1:50630778-50630797 | None:intergenic | 35.0% |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | - | chr1_1:50630789-50630808 | Msa0026680:intron | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | + | chr1_1:50630825-50630844 | None:intergenic | 35.0% |
| GGATAAAGATGGAGATTTAG+GGG | - | chr1_1:50628952-50628971 | Msa0026680:intron | 35.0% | |
| GATAAAGATGGAGATTTAGG+GGG | - | chr1_1:50628953-50628972 | Msa0026680:intron | 35.0% | |
| CACTAGCAATAATAGCACTT+AGG | + | chr1_1:50629041-50629060 | None:intergenic | 35.0% | |
| ! | AGTGCTATTATTGCTAGTGA+AGG | - | chr1_1:50629042-50629061 | Msa0026680:CDS | 35.0% |
| ! | GTGCTATTATTGCTAGTGAA+GGG | - | chr1_1:50629043-50629062 | Msa0026680:CDS | 35.0% |
| ATTGTGCTAACATTCAAACC+TGG | - | chr1_1:50629381-50629400 | Msa0026680:intron | 35.0% | |
| AAATGAAGTAAACACAAGCC+AGG | + | chr1_1:50629402-50629421 | None:intergenic | 35.0% | |
| GAATTAGAGAAACTGAAGAG+TGG | - | chr1_1:50629809-50629828 | Msa0026680:intron | 35.0% | |
| TTATATGATTCCAAGCAACC+AGG | - | chr1_1:50629889-50629908 | Msa0026680:intron | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | - | chr1_1:50629890-50629909 | Msa0026680:intron | 35.0% | |
| !! | GTTTTGTTACACACTTACAC+TGG | + | chr1_1:50630219-50630238 | None:intergenic | 35.0% |
| GGTATGATACTTCATAATGG+TGG | + | chr1_1:50630241-50630260 | None:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | + | chr1_1:50630286-50630305 | None:intergenic | 35.0% |
| ! | ATCGATTTATGCTTCATGCA+TGG | + | chr1_1:50630347-50630366 | None:intergenic | 35.0% |
| AAGTGAGTATGTTAACTAGG+TGG | + | chr1_1:50630457-50630476 | None:intergenic | 35.0% | |
| !! | TAACAACTTGTTGAGCTGTA+GGG | + | chr1_1:50630778-50630797 | None:intergenic | 35.0% |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | - | chr1_1:50630789-50630808 | Msa0026680:intron | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | + | chr1_1:50630825-50630844 | None:intergenic | 35.0% |
| TAGAGAAACTGAAGAGTGGA+CGG | - | chr1_1:50629813-50629832 | Msa0026680:intron | 40.0% | |
| ATATGATTCCAAGCAACCAG+GGG | - | chr1_1:50629891-50629910 | Msa0026680:intron | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | - | chr1_1:50629914-50629933 | Msa0026680:CDS | 40.0% |
| AAACACAAGATGTGCCTAAC+AGG | - | chr1_1:50630158-50630177 | Msa0026680:intron | 40.0% | |
| AGTGACCGTATACAAACACA+CGG | - | chr1_1:50630192-50630211 | Msa0026680:intron | 40.0% | |
| TTATGCTTCATGCATGGTTG+TGG | + | chr1_1:50630341-50630360 | None:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | - | chr1_1:50630604-50630623 | Msa0026680:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | + | chr1_1:50630722-50630741 | None:intergenic | 40.0% |
| !! | AACAACTTGTTGAGCTGTAG+GGG | + | chr1_1:50630777-50630796 | None:intergenic | 40.0% |
| !! | GTAACAACTTGTTGAGCTGT+AGG | + | chr1_1:50630779-50630798 | None:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | - | chr1_1:50630872-50630891 | Msa0026680:intron | 40.0% |
| TAGAGAAACTGAAGAGTGGA+CGG | - | chr1_1:50629813-50629832 | Msa0026680:intron | 40.0% | |
| ATATGATTCCAAGCAACCAG+GGG | - | chr1_1:50629891-50629910 | Msa0026680:intron | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | - | chr1_1:50629914-50629933 | Msa0026680:CDS | 40.0% |
| AAACACAAGATGTGCCTAAC+AGG | - | chr1_1:50630158-50630177 | Msa0026680:intron | 40.0% | |
| AGTGACCGTATACAAACACA+CGG | - | chr1_1:50630192-50630211 | Msa0026680:intron | 40.0% | |
| TTATGCTTCATGCATGGTTG+TGG | + | chr1_1:50630341-50630360 | None:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | - | chr1_1:50630604-50630623 | Msa0026680:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | + | chr1_1:50630722-50630741 | None:intergenic | 40.0% |
| !! | AACAACTTGTTGAGCTGTAG+GGG | + | chr1_1:50630777-50630796 | None:intergenic | 40.0% |
| !! | GTAACAACTTGTTGAGCTGT+AGG | + | chr1_1:50630779-50630798 | None:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | - | chr1_1:50630872-50630891 | Msa0026680:intron | 40.0% |
| ! | GGGGGTTGATCATTCATTAG+AGG | - | chr1_1:50628971-50628990 | Msa0026680:intron | 45.0% |
| TGGCCAGTAGTAGATTCGTT+GGG | + | chr1_1:50629940-50629959 | None:intergenic | 45.0% | |
| TAGGGATGTTGAGATGAACC+TGG | + | chr1_1:50629960-50629979 | None:intergenic | 45.0% | |
| CTGGACCGTGTGTTTGTATA+CGG | + | chr1_1:50630200-50630219 | None:intergenic | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | + | chr1_1:50630616-50630635 | None:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | - | chr1_1:50630614-50630633 | Msa0026680:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | - | chr1_1:50631060-50631079 | Msa0026680:intron | 45.0% | |
| ! | GGGGGTTGATCATTCATTAG+AGG | - | chr1_1:50628971-50628990 | Msa0026680:intron | 45.0% |
| TGGCCAGTAGTAGATTCGTT+GGG | + | chr1_1:50629940-50629959 | None:intergenic | 45.0% | |
| TAGGGATGTTGAGATGAACC+TGG | + | chr1_1:50629960-50629979 | None:intergenic | 45.0% | |
| CTGGACCGTGTGTTTGTATA+CGG | + | chr1_1:50630200-50630219 | None:intergenic | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | + | chr1_1:50630616-50630635 | None:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | - | chr1_1:50630614-50630633 | Msa0026680:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | - | chr1_1:50631060-50631079 | Msa0026680:intron | 45.0% | |
| !!! | TTTTATATTTTTATTAGAAA+AGG | + | chr1_1:50629084-50629103 | None:intergenic | 5.0% |
| !! | AAAAATATAAAATAGAATAA+AGG | - | chr1_1:50629092-50629111 | Msa0026680:CDS | 5.0% |
| !!! | TTTTATATTTTTATTAGAAA+AGG | + | chr1_1:50629084-50629103 | None:intergenic | 5.0% |
| !! | AAAAATATAAAATAGAATAA+AGG | - | chr1_1:50629092-50629111 | Msa0026680:CDS | 5.0% |
| AAAAGAAGCCCCTGGTTGCT+TGG | + | chr1_1:50629902-50629921 | None:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | + | chr1_1:50629910-50629929 | None:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | - | chr1_1:50629910-50629929 | Msa0026680:intron | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | - | chr1_1:50629934-50629953 | Msa0026680:CDS | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | + | chr1_1:50629941-50629960 | None:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | - | chr1_1:50629939-50629958 | Msa0026680:CDS | 50.0% | |
| TCATGCATGGTTGTGGCTGA+AGG | + | chr1_1:50630334-50630353 | None:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | - | chr1_1:50630617-50630636 | Msa0026680:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | - | chr1_1:50630624-50630643 | Msa0026680:intron | 50.0% | |
| ! | ACTTGTTGAGCTGTAGGGGA+TGG | + | chr1_1:50630773-50630792 | None:intergenic | 50.0% |
| AAAAGAAGCCCCTGGTTGCT+TGG | + | chr1_1:50629902-50629921 | None:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | + | chr1_1:50629910-50629929 | None:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | - | chr1_1:50629910-50629929 | Msa0026680:intron | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | - | chr1_1:50629934-50629953 | Msa0026680:CDS | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | + | chr1_1:50629941-50629960 | None:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | - | chr1_1:50629939-50629958 | Msa0026680:CDS | 50.0% | |
| TCATGCATGGTTGTGGCTGA+AGG | + | chr1_1:50630334-50630353 | None:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | - | chr1_1:50630617-50630636 | Msa0026680:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | - | chr1_1:50630624-50630643 | Msa0026680:intron | 50.0% | |
| ! | ACTTGTTGAGCTGTAGGGGA+TGG | + | chr1_1:50630773-50630792 | None:intergenic | 50.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | + | chr1_1:50629926-50629945 | None:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | - | chr1_1:50630985-50631004 | Msa0026680:intron | 55.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | + | chr1_1:50629926-50629945 | None:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | - | chr1_1:50630985-50631004 | Msa0026680:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 50628782 | 50631090 | 50628782 | ID=Msa0026680;Name=Msa0026680 |
| chr1_1 | mRNA | 50628782 | 50631090 | 50628782 | ID=Msa0026680-mRNA-1;Parent=Msa0026680;Name=Msa0026680-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|1|1|4|0|174 |
| chr1_1 | exon | 50631085 | 50631090 | 50631085 | ID=Msa0026680-mRNA-1:exon:14711;Parent=Msa0026680-mRNA-1 |
| chr1_1 | exon | 50629912 | 50630064 | 50629912 | ID=Msa0026680-mRNA-1:exon:14710;Parent=Msa0026680-mRNA-1 |
| chr1_1 | exon | 50628979 | 50629252 | 50628979 | ID=Msa0026680-mRNA-1:exon:14709;Parent=Msa0026680-mRNA-1 |
| chr1_1 | exon | 50628782 | 50628873 | 50628782 | ID=Msa0026680-mRNA-1:exon:14708;Parent=Msa0026680-mRNA-1 |
| chr1_1 | CDS | 50631085 | 50631090 | 50631085 | ID=Msa0026680-mRNA-1:cds;Parent=Msa0026680-mRNA-1 |
| chr1_1 | CDS | 50629912 | 50630064 | 50629912 | ID=Msa0026680-mRNA-1:cds;Parent=Msa0026680-mRNA-1 |
| chr1_1 | CDS | 50628979 | 50629252 | 50628979 | ID=Msa0026680-mRNA-1:cds;Parent=Msa0026680-mRNA-1 |
| chr1_1 | CDS | 50628782 | 50628873 | 50628782 | ID=Msa0026680-mRNA-1:cds;Parent=Msa0026680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
