Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145080 | XP_003589180.1 | 94.937 | 158 | 8 | 0 | 1 | 158 | 17 | 174 | 5.94e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145080 | sp|Q8L8T7|COR27_ARATH | 33.951 | 162 | 96 | 4 | 1 | 151 | 55 | 216 | 1.01e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145080 | G7I3J6 | 94.937 | 158 | 8 | 0 | 1 | 158 | 17 | 174 | 2.84e-109 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0145080 | 0.850024 | 2.217602e-60 | -8.615850e-47 |
| Msa0023010 | Msa0145080 | 0.803762 | 2.986511e-49 | -8.615850e-47 |
| Msa0023040 | Msa0145080 | 0.815559 | 8.689827e-52 | -8.615850e-47 |
| Msa0023050 | Msa0145080 | 0.809451 | 1.879592e-50 | -8.615850e-47 |
| Msa0026680 | Msa0145080 | 0.886483 | 3.289448e-72 | -8.615850e-47 |
| Msa0140630 | Msa0145080 | 0.857029 | 2.155041e-62 | -8.615850e-47 |
| Msa0145080 | Msa0145160 | 0.835588 | 1.537556e-56 | -8.615850e-47 |
| Msa0145080 | Msa0156370 | 0.842403 | 2.641077e-58 | -8.615850e-47 |
| Msa0145080 | Msa0222310 | 0.806671 | 7.346586e-50 | -8.615850e-47 |
| Msa0145080 | Msa0355140 | 0.866687 | 2.376036e-65 | -8.615850e-47 |
| Msa0145080 | Msa0381500 | 0.867748 | 1.088443e-65 | -8.615850e-47 |
| Msa0145080 | Msa0387830 | 0.801259 | 9.799137e-49 | -8.615850e-47 |
| Msa0145080 | Msa0402210 | 0.860288 | 2.293211e-63 | -8.615850e-47 |
| Msa0145080 | Msa0483770 | 0.858695 | 6.905881e-63 | -8.615850e-47 |
| Msa0145080 | Msa0519950 | 0.860368 | 2.168830e-63 | -8.615850e-47 |
| Msa0145080 | Msa0550120 | 0.829484 | 5.015413e-55 | -8.615850e-47 |
| Msa0145080 | Msa0550130 | 0.813750 | 2.185190e-51 | -8.615850e-47 |
| Msa0145080 | Msa0550150 | 0.866438 | 2.850623e-65 | -8.615850e-47 |
| Msa0145080 | Msa0574910 | 0.801560 | 8.500291e-49 | -8.615850e-47 |
| Msa0145080 | Msa0605630 | 0.841348 | 5.016981e-58 | -8.615850e-47 |
| Msa0145080 | Msa0605640 | 0.834872 | 2.331437e-56 | -8.615850e-47 |
| Msa0145080 | Msa0605650 | 0.853462 | 2.352154e-61 | -8.615850e-47 |
| Msa0145080 | Msa0646580 | 0.854873 | 9.210921e-62 | -8.615850e-47 |
| Msa0145080 | Msa0686210 | 0.807436 | 5.059277e-50 | -8.615850e-47 |
| Msa0145080 | Msa0686220 | 0.849559 | 2.992012e-60 | -8.615850e-47 |
| Msa0145080 | Msa0686230 | 0.835635 | 1.496135e-56 | -8.615850e-47 |
| Msa0145080 | Msa0708930 | 0.850383 | 1.759989e-60 | -8.615850e-47 |
| Msa0145080 | Msa0717230 | -0.807742 | 4.356522e-50 | -8.615850e-47 |
| Msa0145080 | Msa0738380 | 0.842652 | 2.268228e-58 | -8.615850e-47 |
| Msa0145080 | Msa0741230 | 0.815831 | 7.558033e-52 | -8.615850e-47 |
| Msa0145080 | Msa0784860 | 0.808861 | 2.515550e-50 | -8.615850e-47 |
| Msa0145080 | Msa0799680 | -0.807984 | 3.868862e-50 | -8.615850e-47 |
| Msa0145080 | Msa0817730 | 0.855229 | 7.256817e-62 | -8.615850e-47 |
| Msa0145080 | Msa0818750 | 0.828767 | 7.484890e-55 | -8.615850e-47 |
| Msa0145080 | Msa0858180 | 0.854372 | 1.286015e-61 | -8.615850e-47 |
| Msa0145080 | Msa0861860 | 0.821195 | 4.593239e-53 | -8.615850e-47 |
| Msa0145080 | Msa0867720 | 0.843946 | 1.024959e-58 | -8.615850e-47 |
| Msa0145080 | Msa0867730 | 0.871812 | 5.138733e-67 | -8.615850e-47 |
| Msa0145080 | Msa0968610 | 0.873137 | 1.855631e-67 | -8.615850e-47 |
| Msa0145080 | Msa1130820 | -0.809041 | 2.302194e-50 | -8.615850e-47 |
| Msa0145080 | Msa1212190 | 0.854210 | 1.432439e-61 | -8.615850e-47 |
| Msa0145080 | Msa1212270 | 0.852809 | 3.618711e-61 | -8.615850e-47 |
| Msa0145080 | Msa1259910 | 0.848714 | 5.141448e-60 | -8.615850e-47 |
| Msa0145080 | Msa1353750 | 0.969877 | 8.997951e-131 | -8.615850e-47 |
| Msa0145080 | Msa1406670 | -0.804259 | 2.354099e-49 | -8.615850e-47 |
| Msa0145080 | Msa1448870 | -0.806337 | 8.640013e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145080 | MtrunA17_Chr1g0153331 | 94.937 | 158 | 8 | 0 | 1 | 158 | 17 | 174 | 5.46e-113 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145080 | AT5G42900.1 | 33.951 | 162 | 96 | 4 | 1 | 151 | 55 | 216 | 1.03e-19 | 82.8 |
| Msa0145080 | AT5G42900.2 | 33.951 | 162 | 96 | 4 | 1 | 151 | 55 | 216 | 1.03e-19 | 82.8 |
| Msa0145080 | AT5G42900.3 | 34.783 | 161 | 95 | 4 | 1 | 151 | 55 | 215 | 2.07e-19 | 82.0 |
Find 25 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTTGGGCCTTCCTTTGC+TGG | 0.272512 | 1_4:+4693935 | None:intergenic |
| TTTATCATGAAAATATGCTT+TGG | 0.399923 | 1_4:-4692593 | Msa0145080:CDS |
| GGATTAACTTTACTCATTTG+TGG | 0.403011 | 1_4:+4692780 | None:intergenic |
| AATATGCTTTGGAGCGATAC+AGG | 0.407619 | 1_4:-4692582 | Msa0145080:intron |
| CGCGAAACGACGAAAATCAT+TGG | 0.419427 | 1_4:-4692394 | Msa0145080:CDS |
| AAAAGAAGCCCCTGGTTGCT+TGG | 0.432229 | 1_4:+4693959 | None:intergenic |
| AGGTTCTTCGAGGTGGTTGT+TGG | 0.465085 | 1_4:-4692830 | Msa0145080:CDS |
| GATCGATAGTGTTGAATCCA+TGG | 0.498424 | 1_4:+4692735 | None:intergenic |
| CAACAGTTCAAGGTTCTTCG+AGG | 0.499617 | 1_4:-4692840 | Msa0145080:intron |
| TAACAACTTGTTGAGCTGTA+GGG | 0.513024 | 1_4:+4692679 | None:intergenic |
| CTTGGCTCGTGCAGAAGTGT+CGG | 0.519163 | 1_4:-4692469 | Msa0145080:intron |
| GTAACAACTTGTTGAGCTGT+AGG | 0.525566 | 1_4:+4692678 | None:intergenic |
| CAACGAATCTACTACTGGCC+AGG | 0.527699 | 1_4:-4693919 | Msa0145080:intron |
| TGGCCAGTAGTAGATTCGTT+GGG | 0.558931 | 1_4:+4693921 | None:intergenic |
| CTGGCCAGTAGTAGATTCGT+TGG | 0.560774 | 1_4:+4693920 | None:intergenic |
| AGGCCCAACGAATCTACTAC+TGG | 0.564466 | 1_4:-4693924 | Msa0145080:CDS |
| CAGTTCAAGGTTCTTCGAGG+TGG | 0.575031 | 1_4:-4692837 | Msa0145080:CDS |
| TTATATGATTCCAAGCAACC+AGG | 0.576406 | 1_4:-4693969 | Msa0145080:CDS |
| AACAACTTGTTGAGCTGTAG+GGG | 0.584635 | 1_4:+4692680 | None:intergenic |
| ATCGATAGTGTTGAATCCAT+GGG | 0.586171 | 1_4:+4692736 | None:intergenic |
| ACTTGTTGAGCTGTAGGGGA+TGG | 0.586514 | 1_4:+4692684 | None:intergenic |
| AAGTTGTTACTTCAAGCCAA+AGG | 0.633769 | 1_4:-4692665 | Msa0145080:CDS |
| TATATGATTCCAAGCAACCA+GGG | 0.650365 | 1_4:-4693968 | Msa0145080:CDS |
| CTTGCAATAAAATCATTGTG+TGG | 0.659878 | 1_4:+4692759 | None:intergenic |
| ATATGATTCCAAGCAACCAG+GGG | 0.665275 | 1_4:-4693967 | Msa0145080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAAATATTAAAATT+AGG | - | chr1_4:4692540-4692559 | Msa0145080:intron | 0.0% |
| !! | AATTATTAAATATTAAAATT+AGG | - | chr1_4:4692540-4692559 | Msa0145080:intron | 0.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | + | chr1_4:4692650-4692669 | None:intergenic | 10.0% |
| !!! | TTAGTTAAAGTTTTTTTTTT+GGG | + | chr1_4:4692949-4692968 | None:intergenic | 10.0% |
| !!! | TTTAGTTAAAGTTTTTTTTT+TGG | + | chr1_4:4692950-4692969 | None:intergenic | 10.0% |
| !!! | AATATTATATATTTTCCTTT+TGG | + | chr1_4:4692650-4692669 | None:intergenic | 10.0% |
| !!! | TTAGTTAAAGTTTTTTTTTT+GGG | + | chr1_4:4692949-4692968 | None:intergenic | 10.0% |
| !!! | TTTAGTTAAAGTTTTTTTTT+TGG | + | chr1_4:4692950-4692969 | None:intergenic | 10.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | + | chr1_4:4692514-4692533 | None:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | + | chr1_4:4692515-4692534 | None:intergenic | 15.0% |
| !!! | TAGTTAAAGTTTTTTTTTTG+GGG | + | chr1_4:4692948-4692967 | None:intergenic | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+TGG | - | chr1_4:4693377-4693396 | Msa0145080:intron | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | + | chr1_4:4693860-4693879 | None:intergenic | 15.0% |
| !!! | CACAAAATTTTCATATTATA+GGG | + | chr1_4:4692514-4692533 | None:intergenic | 15.0% |
| !!! | TCACAAAATTTTCATATTAT+AGG | + | chr1_4:4692515-4692534 | None:intergenic | 15.0% |
| !!! | TAGTTAAAGTTTTTTTTTTG+GGG | + | chr1_4:4692948-4692967 | None:intergenic | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+TGG | - | chr1_4:4693377-4693396 | Msa0145080:intron | 15.0% |
| !! | TAGTTAACTATTTGAATAAT+TGG | + | chr1_4:4693860-4693879 | None:intergenic | 15.0% |
| !! | GCAAATCAAATAAAAAAATC+AGG | - | chr1_4:4692812-4692831 | Msa0145080:CDS | 20.0% |
| !! | TACAATATATTCTTATCTCT+AGG | + | chr1_4:4692888-4692907 | None:intergenic | 20.0% |
| !! | ATATATTGTAGTTGTGTATA+CGG | - | chr1_4:4692898-4692917 | Msa0145080:intron | 20.0% |
| !!! | AATTTGCTAGTTTAATGTTT+GGG | - | chr1_4:4693145-4693164 | Msa0145080:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | chr1_4:4693188-4693207 | None:intergenic | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | chr1_4:4693189-4693208 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTCATTTTATA+GGG | + | chr1_4:4693219-4693238 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTCATTTTAT+AGG | + | chr1_4:4693220-4693239 | None:intergenic | 20.0% |
| !!! | TAAAATGAAATCACACTTTT+TGG | - | chr1_4:4693221-4693240 | Msa0145080:intron | 20.0% |
| !!! | TGCTAATGGAAAAATTTTAT+AGG | - | chr1_4:4693316-4693335 | Msa0145080:intron | 20.0% |
| !!! | GCTAATGGAAAAATTTTATA+GGG | - | chr1_4:4693317-4693336 | Msa0145080:intron | 20.0% |
| !! | ACAAAATTCTGAATATTTAC+AGG | - | chr1_4:4693407-4693426 | Msa0145080:intron | 20.0% |
| !! | CAAAATTCTGAATATTTACA+GGG | - | chr1_4:4693408-4693427 | Msa0145080:intron | 20.0% |
| !! | TTAAGGGTTAATTAAGTAAA+TGG | + | chr1_4:4693435-4693454 | None:intergenic | 20.0% |
| !! | TTTGTGTACAAAAACATTAA+GGG | + | chr1_4:4693451-4693470 | None:intergenic | 20.0% |
| !! | ATTTGTGTACAAAAACATTA+AGG | + | chr1_4:4693452-4693471 | None:intergenic | 20.0% |
| !! | AAAAAAATTTCCTCAAAAAC+AGG | - | chr1_4:4693752-4693771 | Msa0145080:intron | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | - | chr1_4:4693801-4693820 | Msa0145080:intron | 20.0% |
| !! | GCAAATCAAATAAAAAAATC+AGG | - | chr1_4:4692812-4692831 | Msa0145080:CDS | 20.0% |
| !! | TACAATATATTCTTATCTCT+AGG | + | chr1_4:4692888-4692907 | None:intergenic | 20.0% |
| !! | ATATATTGTAGTTGTGTATA+CGG | - | chr1_4:4692898-4692917 | Msa0145080:intron | 20.0% |
| !!! | AATTTGCTAGTTTAATGTTT+GGG | - | chr1_4:4693145-4693164 | Msa0145080:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | chr1_4:4693188-4693207 | None:intergenic | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | chr1_4:4693189-4693208 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTCATTTTATA+GGG | + | chr1_4:4693219-4693238 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTCATTTTAT+AGG | + | chr1_4:4693220-4693239 | None:intergenic | 20.0% |
| !!! | TAAAATGAAATCACACTTTT+TGG | - | chr1_4:4693221-4693240 | Msa0145080:intron | 20.0% |
| !!! | TGCTAATGGAAAAATTTTAT+AGG | - | chr1_4:4693316-4693335 | Msa0145080:intron | 20.0% |
| !!! | GCTAATGGAAAAATTTTATA+GGG | - | chr1_4:4693317-4693336 | Msa0145080:intron | 20.0% |
| !! | ACAAAATTCTGAATATTTAC+AGG | - | chr1_4:4693407-4693426 | Msa0145080:intron | 20.0% |
| !! | CAAAATTCTGAATATTTACA+GGG | - | chr1_4:4693408-4693427 | Msa0145080:intron | 20.0% |
| !! | TTAAGGGTTAATTAAGTAAA+TGG | + | chr1_4:4693435-4693454 | None:intergenic | 20.0% |
| !! | TTTGTGTACAAAAACATTAA+GGG | + | chr1_4:4693451-4693470 | None:intergenic | 20.0% |
| !! | ATTTGTGTACAAAAACATTA+AGG | + | chr1_4:4693452-4693471 | None:intergenic | 20.0% |
| !! | AAAAAAATTTCCTCAAAAAC+AGG | - | chr1_4:4693752-4693771 | Msa0145080:intron | 20.0% |
| !! | TTTATCATGAAAATATGCTT+TGG | - | chr1_4:4693801-4693820 | Msa0145080:intron | 20.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | + | chr1_4:4692807-4692826 | None:intergenic | 25.0% |
| !!! | CAATTTGCTAGTTTAATGTT+TGG | - | chr1_4:4693144-4693163 | Msa0145080:intron | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | - | chr1_4:4693252-4693271 | Msa0145080:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | - | chr1_4:4693253-4693272 | Msa0145080:intron | 25.0% |
| !! | AGAATTTCCATCAACATTTT+TGG | + | chr1_4:4693280-4693299 | None:intergenic | 25.0% |
| ! | ATAGAGACTAAAAATGCTAA+TGG | - | chr1_4:4693302-4693321 | Msa0145080:intron | 25.0% |
| !! | TGCTGATGGAAATTTTTATA+AGG | - | chr1_4:4693348-4693367 | Msa0145080:intron | 25.0% |
| !!! | TTGAGGAAATTTTTTTCCTT+TGG | + | chr1_4:4693748-4693767 | None:intergenic | 25.0% |
| !!! | TTTTATTTGATTTGCATTCG+TGG | + | chr1_4:4692807-4692826 | None:intergenic | 25.0% |
| !!! | CAATTTGCTAGTTTAATGTT+TGG | - | chr1_4:4693144-4693163 | Msa0145080:intron | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | - | chr1_4:4693252-4693271 | Msa0145080:intron | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | - | chr1_4:4693253-4693272 | Msa0145080:intron | 25.0% |
| !! | AGAATTTCCATCAACATTTT+TGG | + | chr1_4:4693280-4693299 | None:intergenic | 25.0% |
| ! | ATAGAGACTAAAAATGCTAA+TGG | - | chr1_4:4693302-4693321 | Msa0145080:intron | 25.0% |
| !! | TGCTGATGGAAATTTTTATA+AGG | - | chr1_4:4693348-4693367 | Msa0145080:intron | 25.0% |
| !!! | TTGAGGAAATTTTTTTCCTT+TGG | + | chr1_4:4693748-4693767 | None:intergenic | 25.0% |
| TATGTAAGCCTAAGAAGAAA+AGG | - | chr1_4:4692596-4692615 | Msa0145080:CDS | 30.0% | |
| ! | TTATCTCTCCTTTTCTTCTT+AGG | + | chr1_4:4692607-4692626 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTAAGAAGCCAAA+AGG | - | chr1_4:4692632-4692651 | Msa0145080:CDS | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | + | chr1_4:4692703-4692722 | None:intergenic | 30.0% |
| GGTATGATACTTTATAACAG+TGG | + | chr1_4:4692761-4692780 | None:intergenic | 30.0% | |
| ATTGCATTAAGCTTCATACA+TGG | + | chr1_4:4692859-4692878 | None:intergenic | 30.0% | |
| AACTAAAGAATACTCCTCTA+TGG | - | chr1_4:4692963-4692982 | Msa0145080:intron | 30.0% | |
| ATCACACAAATGAAAGAAGT+TGG | - | chr1_4:4693019-4693038 | Msa0145080:intron | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | + | chr1_4:4693090-4693109 | None:intergenic | 30.0% | |
| ATTATTGTAGTATTCCACCT+AGG | - | chr1_4:4693107-4693126 | Msa0145080:intron | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | + | chr1_4:4693617-4693636 | None:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | + | chr1_4:4693638-4693657 | None:intergenic | 30.0% | |
| TCTCATACTAATGTCTTTCT+TGG | - | chr1_4:4693907-4693926 | Msa0145080:intron | 30.0% | |
| TATGTAAGCCTAAGAAGAAA+AGG | - | chr1_4:4692596-4692615 | Msa0145080:CDS | 30.0% | |
| ! | TTATCTCTCCTTTTCTTCTT+AGG | + | chr1_4:4692607-4692626 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTAAGAAGCCAAA+AGG | - | chr1_4:4692632-4692651 | Msa0145080:CDS | 30.0% |
| !!! | ACTTTGTTTTGATTCCTGTT+AGG | + | chr1_4:4692703-4692722 | None:intergenic | 30.0% |
| GGTATGATACTTTATAACAG+TGG | + | chr1_4:4692761-4692780 | None:intergenic | 30.0% | |
| ATTGCATTAAGCTTCATACA+TGG | + | chr1_4:4692859-4692878 | None:intergenic | 30.0% | |
| AACTAAAGAATACTCCTCTA+TGG | - | chr1_4:4692963-4692982 | Msa0145080:intron | 30.0% | |
| ATCACACAAATGAAAGAAGT+TGG | - | chr1_4:4693019-4693038 | Msa0145080:intron | 30.0% | |
| AATGAGTCACACTAACTATA+AGG | + | chr1_4:4693090-4693109 | None:intergenic | 30.0% | |
| ATTATTGTAGTATTCCACCT+AGG | - | chr1_4:4693107-4693126 | Msa0145080:intron | 30.0% | |
| GGATTAACTTTACTCATTTG+TGG | + | chr1_4:4693617-4693636 | None:intergenic | 30.0% | |
| CTTGCAATAAAATCATTGTG+TGG | + | chr1_4:4693638-4693657 | None:intergenic | 30.0% | |
| TCTCATACTAATGTCTTTCT+TGG | - | chr1_4:4693907-4693926 | Msa0145080:intron | 30.0% | |
| TTATATGATTCCAAGCAACC+AGG | - | chr1_4:4692425-4692444 | Msa0145080:CDS | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | - | chr1_4:4692426-4692445 | Msa0145080:CDS | 35.0% | |
| TAGGGATATTGAAATGAACC+TGG | + | chr1_4:4692496-4692515 | None:intergenic | 35.0% | |
| GATTAACTCATCTCTGTCTT+GGG | + | chr1_4:4692782-4692801 | None:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | + | chr1_4:4692804-4692823 | None:intergenic | 35.0% |
| TGTCTAGACCTTTCTATATG+AGG | + | chr1_4:4692995-4693014 | None:intergenic | 35.0% | |
| TTGAAGTGAGTATGTTACCT+AGG | + | chr1_4:4693127-4693146 | None:intergenic | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | + | chr1_4:4693248-4693267 | None:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | + | chr1_4:4693249-4693268 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr1_4:4693262-4693281 | None:intergenic | 35.0% | |
| TTAGGGACCAAAAATGTTGA+TGG | - | chr1_4:4693270-4693289 | Msa0145080:intron | 35.0% | |
| ATAGGGACTAAAAATGCTGA+TGG | - | chr1_4:4693334-4693353 | Msa0145080:intron | 35.0% | |
| ! | ATGATTTTATTGCAAGCCCA+TGG | - | chr1_4:4693642-4693661 | Msa0145080:intron | 35.0% |
| ! | ATCGATAGTGTTGAATCCAT+GGG | + | chr1_4:4693661-4693680 | None:intergenic | 35.0% |
| !! | TAACAACTTGTTGAGCTGTA+GGG | + | chr1_4:4693718-4693737 | None:intergenic | 35.0% |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | - | chr1_4:4693729-4693748 | Msa0145080:intron | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | + | chr1_4:4693765-4693784 | None:intergenic | 35.0% |
| TTATATGATTCCAAGCAACC+AGG | - | chr1_4:4692425-4692444 | Msa0145080:CDS | 35.0% | |
| TATATGATTCCAAGCAACCA+GGG | - | chr1_4:4692426-4692445 | Msa0145080:CDS | 35.0% | |
| TAGGGATATTGAAATGAACC+TGG | + | chr1_4:4692496-4692515 | None:intergenic | 35.0% | |
| GATTAACTCATCTCTGTCTT+GGG | + | chr1_4:4692782-4692801 | None:intergenic | 35.0% | |
| !! | TATTTGATTTGCATTCGTGG+TGG | + | chr1_4:4692804-4692823 | None:intergenic | 35.0% |
| TGTCTAGACCTTTCTATATG+AGG | + | chr1_4:4692995-4693014 | None:intergenic | 35.0% | |
| TTGAAGTGAGTATGTTACCT+AGG | + | chr1_4:4693127-4693146 | None:intergenic | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | + | chr1_4:4693248-4693267 | None:intergenic | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | + | chr1_4:4693249-4693268 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr1_4:4693262-4693281 | None:intergenic | 35.0% | |
| TTAGGGACCAAAAATGTTGA+TGG | - | chr1_4:4693270-4693289 | Msa0145080:intron | 35.0% | |
| ATAGGGACTAAAAATGCTGA+TGG | - | chr1_4:4693334-4693353 | Msa0145080:intron | 35.0% | |
| ! | ATGATTTTATTGCAAGCCCA+TGG | - | chr1_4:4693642-4693661 | Msa0145080:intron | 35.0% |
| ! | ATCGATAGTGTTGAATCCAT+GGG | + | chr1_4:4693661-4693680 | None:intergenic | 35.0% |
| !! | TAACAACTTGTTGAGCTGTA+GGG | + | chr1_4:4693718-4693737 | None:intergenic | 35.0% |
| ! | AAGTTGTTACTTCAAGCCAA+AGG | - | chr1_4:4693729-4693748 | Msa0145080:intron | 35.0% |
| !!! | ATGAAGTTGTCCTGTTTTTG+AGG | + | chr1_4:4693765-4693784 | None:intergenic | 35.0% |
| ATATGATTCCAAGCAACCAG+GGG | - | chr1_4:4692427-4692446 | Msa0145080:CDS | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | - | chr1_4:4692450-4692469 | Msa0145080:CDS | 40.0% |
| AGTGACCGTATACAAACACA+CGG | - | chr1_4:4692720-4692739 | Msa0145080:CDS | 40.0% | |
| CTGTACCGTGTGTTTGTATA+CGG | + | chr1_4:4692728-4692747 | None:intergenic | 40.0% | |
| TATACAAACACACGGTACAG+CGG | - | chr1_4:4692728-4692747 | Msa0145080:CDS | 40.0% | |
| GGATTAACTCATCTCTGTCT+TGG | + | chr1_4:4692783-4692802 | None:intergenic | 40.0% | |
| AAGTGAGTATGTTACCTAGG+TGG | + | chr1_4:4693124-4693143 | None:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | - | chr1_4:4693544-4693563 | Msa0145080:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | + | chr1_4:4693662-4693681 | None:intergenic | 40.0% |
| !! | AACAACTTGTTGAGCTGTAG+GGG | + | chr1_4:4693717-4693736 | None:intergenic | 40.0% |
| !! | GTAACAACTTGTTGAGCTGT+AGG | + | chr1_4:4693719-4693738 | None:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | - | chr1_4:4693812-4693831 | Msa0145080:intron | 40.0% |
| ATATGATTCCAAGCAACCAG+GGG | - | chr1_4:4692427-4692446 | Msa0145080:CDS | 40.0% | |
| ! | CTTCTTTTTCCAGCAAAGGA+AGG | - | chr1_4:4692450-4692469 | Msa0145080:CDS | 40.0% |
| AGTGACCGTATACAAACACA+CGG | - | chr1_4:4692720-4692739 | Msa0145080:CDS | 40.0% | |
| CTGTACCGTGTGTTTGTATA+CGG | + | chr1_4:4692728-4692747 | None:intergenic | 40.0% | |
| TATACAAACACACGGTACAG+CGG | - | chr1_4:4692728-4692747 | Msa0145080:CDS | 40.0% | |
| GGATTAACTCATCTCTGTCT+TGG | + | chr1_4:4692783-4692802 | None:intergenic | 40.0% | |
| AAGTGAGTATGTTACCTAGG+TGG | + | chr1_4:4693124-4693143 | None:intergenic | 40.0% | |
| TCGCATTTACCAACAGTTCA+AGG | - | chr1_4:4693544-4693563 | Msa0145080:intron | 40.0% | |
| ! | GATCGATAGTGTTGAATCCA+TGG | + | chr1_4:4693662-4693681 | None:intergenic | 40.0% |
| !! | AACAACTTGTTGAGCTGTAG+GGG | + | chr1_4:4693717-4693736 | None:intergenic | 40.0% |
| !! | GTAACAACTTGTTGAGCTGT+AGG | + | chr1_4:4693719-4693738 | None:intergenic | 40.0% |
| !! | AATATGCTTTGGAGCGATAC+AGG | - | chr1_4:4693812-4693831 | Msa0145080:intron | 40.0% |
| TGGCCAGTAGTAGATTCGTT+GGG | + | chr1_4:4692476-4692495 | None:intergenic | 45.0% | |
| CACATCTTGTGTGTTTGACG+GGG | + | chr1_4:4692680-4692699 | None:intergenic | 45.0% | |
| GCACATCTTGTGTGTTTGAC+GGG | + | chr1_4:4692681-4692700 | None:intergenic | 45.0% | |
| GGCACATCTTGTGTGTTTGA+CGG | + | chr1_4:4692682-4692701 | None:intergenic | 45.0% | |
| ACACACAAGATGTGCCTAAC+AGG | - | chr1_4:4692686-4692705 | Msa0145080:CDS | 45.0% | |
| ATATGAGGACAGAGCCATAG+AGG | + | chr1_4:4692980-4692999 | None:intergenic | 45.0% | |
| GGCTCTGTCCTCATATAGAA+AGG | - | chr1_4:4692984-4693003 | Msa0145080:intron | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | + | chr1_4:4693556-4693575 | None:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | - | chr1_4:4693554-4693573 | Msa0145080:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | - | chr1_4:4694000-4694019 | Msa0145080:CDS | 45.0% | |
| TGGCCAGTAGTAGATTCGTT+GGG | + | chr1_4:4692476-4692495 | None:intergenic | 45.0% | |
| CACATCTTGTGTGTTTGACG+GGG | + | chr1_4:4692680-4692699 | None:intergenic | 45.0% | |
| GCACATCTTGTGTGTTTGAC+GGG | + | chr1_4:4692681-4692700 | None:intergenic | 45.0% | |
| GGCACATCTTGTGTGTTTGA+CGG | + | chr1_4:4692682-4692701 | None:intergenic | 45.0% | |
| ACACACAAGATGTGCCTAAC+AGG | - | chr1_4:4692686-4692705 | Msa0145080:CDS | 45.0% | |
| ATATGAGGACAGAGCCATAG+AGG | + | chr1_4:4692980-4692999 | None:intergenic | 45.0% | |
| GGCTCTGTCCTCATATAGAA+AGG | - | chr1_4:4692984-4693003 | Msa0145080:intron | 45.0% | |
| CTCGAAGAACCTTGAACTGT+TGG | + | chr1_4:4693556-4693575 | None:intergenic | 45.0% | |
| CAACAGTTCAAGGTTCTTCG+AGG | - | chr1_4:4693554-4693573 | Msa0145080:intron | 45.0% | |
| CGCGAAACGACGAAAATCAT+TGG | - | chr1_4:4694000-4694019 | Msa0145080:CDS | 45.0% | |
| AAAAGAAGCCCCTGGTTGCT+TGG | + | chr1_4:4692438-4692457 | None:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | + | chr1_4:4692446-4692465 | None:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | - | chr1_4:4692446-4692465 | Msa0145080:CDS | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | - | chr1_4:4692470-4692489 | Msa0145080:intron | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | + | chr1_4:4692477-4692496 | None:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | - | chr1_4:4692475-4692494 | Msa0145080:intron | 50.0% | |
| TCATACATGGTCGTCGCTGA+AGG | + | chr1_4:4692846-4692865 | None:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | - | chr1_4:4693557-4693576 | Msa0145080:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | - | chr1_4:4693564-4693583 | Msa0145080:intron | 50.0% | |
| ! | ACTTGTTGAGCTGTAGGGGA+TGG | + | chr1_4:4693713-4693732 | None:intergenic | 50.0% |
| AAAAGAAGCCCCTGGTTGCT+TGG | + | chr1_4:4692438-4692457 | None:intergenic | 50.0% | |
| TTGCTGGAAAAAGAAGCCCC+TGG | + | chr1_4:4692446-4692465 | None:intergenic | 50.0% | |
| ! | GGGGCTTCTTTTTCCAGCAA+AGG | - | chr1_4:4692446-4692465 | Msa0145080:CDS | 50.0% |
| AGGCCCAACGAATCTACTAC+TGG | - | chr1_4:4692470-4692489 | Msa0145080:intron | 50.0% | |
| CTGGCCAGTAGTAGATTCGT+TGG | + | chr1_4:4692477-4692496 | None:intergenic | 50.0% | |
| CAACGAATCTACTACTGGCC+AGG | - | chr1_4:4692475-4692494 | Msa0145080:intron | 50.0% | |
| TCATACATGGTCGTCGCTGA+AGG | + | chr1_4:4692846-4692865 | None:intergenic | 50.0% | |
| CAGTTCAAGGTTCTTCGAGG+TGG | - | chr1_4:4693557-4693576 | Msa0145080:intron | 50.0% | |
| AGGTTCTTCGAGGTGGTTGT+TGG | - | chr1_4:4693564-4693583 | Msa0145080:intron | 50.0% | |
| ! | ACTTGTTGAGCTGTAGGGGA+TGG | + | chr1_4:4693713-4693732 | None:intergenic | 50.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | + | chr1_4:4692462-4692481 | None:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | - | chr1_4:4693925-4693944 | Msa0145080:CDS | 55.0% |
| TTCGTTGGGCCTTCCTTTGC+TGG | + | chr1_4:4692462-4692481 | None:intergenic | 55.0% | |
| ! | CTTGGCTCGTGCAGAAGTGT+CGG | - | chr1_4:4693925-4693944 | Msa0145080:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4692386 | 4694030 | 4692386 | ID=Msa0145080;Name=Msa0145080 |
| chr1_4 | mRNA | 4692386 | 4694030 | 4692386 | ID=Msa0145080-mRNA-1;Parent=Msa0145080;Name=Msa0145080-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|0.66|3|0|158 |
| chr1_4 | exon | 4693920 | 4694030 | 4693920 | ID=Msa0145080-mRNA-1:exon:2009;Parent=Msa0145080-mRNA-1 |
| chr1_4 | exon | 4692583 | 4692856 | 4692583 | ID=Msa0145080-mRNA-1:exon:2008;Parent=Msa0145080-mRNA-1 |
| chr1_4 | exon | 4692386 | 4692477 | 4692386 | ID=Msa0145080-mRNA-1:exon:2007;Parent=Msa0145080-mRNA-1 |
| chr1_4 | CDS | 4693920 | 4694030 | 4693920 | ID=Msa0145080-mRNA-1:cds;Parent=Msa0145080-mRNA-1 |
| chr1_4 | CDS | 4692583 | 4692856 | 4692583 | ID=Msa0145080-mRNA-1:cds;Parent=Msa0145080-mRNA-1 |
| chr1_4 | CDS | 4692386 | 4692477 | 4692386 | ID=Msa0145080-mRNA-1:cds;Parent=Msa0145080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
