Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708930 | XP_013459414.1 | 90.799 | 576 | 43 | 5 | 1 | 571 | 1 | 571 | 0.0 | 1071 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708930 | sp|Q9LKL2|APRR1_ARATH | 48.534 | 614 | 237 | 17 | 6 | 560 | 1 | 594 | 1.28e-166 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708930 | A0A072V5J5 | 90.799 | 576 | 43 | 5 | 1 | 571 | 1 | 571 | 0.0 | 1071 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0708930 | 0.803026 | 4.242596e-49 | -8.615850e-47 |
| Msa0015930 | Msa0708930 | 0.839153 | 1.878304e-57 | -8.615850e-47 |
| Msa0023040 | Msa0708930 | 0.803016 | 4.263361e-49 | -8.615850e-47 |
| Msa0026680 | Msa0708930 | 0.842727 | 2.166611e-58 | -8.615850e-47 |
| Msa0604010 | Msa0708930 | 0.819458 | 1.149163e-52 | -8.615850e-47 |
| Msa0605630 | Msa0708930 | 0.841785 | 3.848293e-58 | -8.615850e-47 |
| Msa0605650 | Msa0708930 | 0.828741 | 7.593984e-55 | -8.615850e-47 |
| Msa0609660 | Msa0708930 | -0.801311 | 9.559832e-49 | -8.615850e-47 |
| Msa0646580 | Msa0708930 | 0.840928 | 6.471756e-58 | -8.615850e-47 |
| Msa0686210 | Msa0708930 | 0.812303 | 4.538230e-51 | -8.615850e-47 |
| Msa0686220 | Msa0708930 | 0.807977 | 3.883832e-50 | -8.615850e-47 |
| Msa0692240 | Msa0708930 | -0.804791 | 1.823053e-49 | -8.615850e-47 |
| Msa0708930 | Msa0738380 | 0.843344 | 1.484975e-58 | -8.615850e-47 |
| Msa0708930 | Msa0741230 | 0.813481 | 2.504546e-51 | -8.615850e-47 |
| Msa0708930 | Msa0764680 | -0.829171 | 5.976799e-55 | -8.615850e-47 |
| Msa0708930 | Msa0817730 | 0.851392 | 9.144029e-61 | -8.615850e-47 |
| Msa0708930 | Msa0818750 | 0.807996 | 3.847954e-50 | -8.615850e-47 |
| Msa0708930 | Msa0844220 | -0.814327 | 1.630392e-51 | -8.615850e-47 |
| Msa0708930 | Msa0858180 | 0.847179 | 1.361761e-59 | -8.615850e-47 |
| Msa0708930 | Msa0861860 | 0.821696 | 3.519984e-53 | -8.615850e-47 |
| Msa0708930 | Msa0867720 | 0.803950 | 2.729672e-49 | -8.615850e-47 |
| Msa0708930 | Msa0867730 | 0.833950 | 3.973330e-56 | -8.615850e-47 |
| Msa0708930 | Msa0968610 | 0.875927 | 2.094297e-68 | -8.615850e-47 |
| Msa0708930 | Msa0982130 | 0.831026 | 2.107213e-55 | -8.615850e-47 |
| Msa0708930 | Msa1130820 | -0.833326 | 5.686847e-56 | -8.615850e-47 |
| Msa0708930 | Msa1172610 | -0.805581 | 1.245859e-49 | -8.615850e-47 |
| Msa0708930 | Msa1212190 | 0.901087 | 3.817672e-78 | -8.615850e-47 |
| Msa0708930 | Msa1212270 | 0.894585 | 2.148080e-75 | -8.615850e-47 |
| Msa0708930 | Msa1259910 | 0.898412 | 5.443217e-77 | -8.615850e-47 |
| Msa0708930 | Msa1353750 | 0.844107 | 9.275716e-59 | -8.615850e-47 |
| Msa0708930 | Msa1384360 | -0.807189 | 5.706688e-50 | -8.615850e-47 |
| Msa0708930 | Msa1406670 | -0.826455 | 2.687382e-54 | -8.615850e-47 |
| Msa0708930 | Msa1448870 | -0.829473 | 5.047565e-55 | -8.615850e-47 |
| Msa0140630 | Msa0708930 | 0.864218 | 1.423914e-64 | -8.615850e-47 |
| Msa0145080 | Msa0708930 | 0.850383 | 1.759989e-60 | -8.615850e-47 |
| Msa0145160 | Msa0708930 | 0.809863 | 1.533433e-50 | -8.615850e-47 |
| Msa0156370 | Msa0708930 | 0.830852 | 2.325350e-55 | -8.615850e-47 |
| Msa0381500 | Msa0708930 | 0.868759 | 5.141924e-66 | -8.615850e-47 |
| Msa0387830 | Msa0708930 | 0.802010 | 6.872429e-49 | -8.615850e-47 |
| Msa0402210 | Msa0708930 | 0.954238 | 4.639261e-112 | -8.615850e-47 |
| Msa0435980 | Msa0708930 | -0.807286 | 5.444645e-50 | -8.615850e-47 |
| Msa0469560 | Msa0708930 | -0.831774 | 1.379277e-55 | -8.615850e-47 |
| Msa0355140 | Msa0708930 | 0.960796 | 5.782291e-119 | -8.615850e-47 |
| Msa0483770 | Msa0708930 | 0.959149 | 3.997423e-117 | -8.615850e-47 |
| Msa0515270 | Msa0708930 | -0.822249 | 2.620052e-53 | -8.615850e-47 |
| Msa0519950 | Msa0708930 | 0.856726 | 2.647880e-62 | -8.615850e-47 |
| Msa0527690 | Msa0708930 | -0.810812 | 9.569357e-51 | -8.615850e-47 |
| Msa0550120 | Msa0708930 | 0.845157 | 4.839281e-59 | -8.615850e-47 |
| Msa0550150 | Msa0708930 | 0.831357 | 1.747270e-55 | -8.615850e-47 |
| Msa0574910 | Msa0708930 | 0.800286 | 1.547444e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708930 | MtrunA17_Chr3g0091641 | 90.799 | 576 | 43 | 5 | 1 | 571 | 1 | 571 | 0.0 | 1071 |
| Msa0708930 | MtrunA17_Chr4g0061021 | 64.931 | 576 | 145 | 8 | 10 | 558 | 19 | 564 | 0.0 | 729 |
| Msa0708930 | MtrunA17_Chr3g0127941 | 30.464 | 302 | 172 | 8 | 18 | 315 | 50 | 317 | 4.04e-31 | 128 |
| Msa0708930 | MtrunA17_Chr3g0127941 | 68.889 | 45 | 14 | 0 | 499 | 543 | 630 | 674 | 1.01e-12 | 71.2 |
| Msa0708930 | MtrunA17_Chr4g0030271 | 34.450 | 209 | 127 | 3 | 18 | 220 | 83 | 287 | 1.10e-28 | 121 |
| Msa0708930 | MtrunA17_Chr4g0030271 | 68.750 | 48 | 15 | 0 | 495 | 542 | 717 | 764 | 3.12e-15 | 79.3 |
| Msa0708930 | MtrunA17_Chr8g0345901 | 35.838 | 173 | 94 | 1 | 18 | 190 | 30 | 185 | 1.22e-27 | 117 |
| Msa0708930 | MtrunA17_Chr8g0345901 | 66.667 | 45 | 15 | 0 | 498 | 542 | 583 | 627 | 9.29e-12 | 67.8 |
| Msa0708930 | MtrunA17_Chr7g0276361 | 42.188 | 128 | 74 | 0 | 18 | 145 | 8 | 135 | 4.33e-27 | 115 |
| Msa0708930 | MtrunA17_Chr7g0276361 | 60.000 | 50 | 20 | 0 | 495 | 544 | 537 | 586 | 2.54e-13 | 72.8 |
| Msa0708930 | MtrunA17_Chr1g0181811 | 31.556 | 225 | 136 | 3 | 18 | 229 | 79 | 298 | 2.83e-26 | 114 |
| Msa0708930 | MtrunA17_Chr1g0181811 | 61.404 | 57 | 19 | 1 | 486 | 539 | 678 | 734 | 9.63e-13 | 71.2 |
| Msa0708930 | MtrunA17_Chr1g0161431 | 30.732 | 205 | 126 | 4 | 24 | 228 | 15 | 203 | 1.76e-21 | 98.6 |
| Msa0708930 | MtrunA17_Chr3g0091661 | 65.714 | 70 | 20 | 2 | 37 | 106 | 27 | 92 | 2.62e-21 | 89.0 |
| Msa0708930 | MtrunA17_Chr3g0123131 | 34.959 | 123 | 77 | 1 | 24 | 146 | 17 | 136 | 6.54e-20 | 93.6 |
| Msa0708930 | MtrunA17_Chr2g0294911 | 36.290 | 124 | 76 | 1 | 24 | 147 | 33 | 153 | 2.33e-19 | 92.0 |
| Msa0708930 | MtrunA17_Chr3g0137101 | 34.677 | 124 | 78 | 1 | 24 | 147 | 12 | 132 | 4.61e-19 | 91.3 |
| Msa0708930 | MtrunA17_Chr4g0067981 | 34.677 | 124 | 78 | 1 | 24 | 147 | 35 | 155 | 6.84e-19 | 90.5 |
| Msa0708930 | MtrunA17_Chr3g0134481 | 35.338 | 133 | 81 | 2 | 16 | 146 | 2 | 131 | 1.77e-18 | 84.0 |
| Msa0708930 | MtrunA17_Chr2g0304841 | 32.836 | 134 | 85 | 2 | 16 | 147 | 12 | 142 | 1.93e-18 | 89.4 |
| Msa0708930 | MtrunA17_Chr8g0376881 | 34.146 | 123 | 78 | 1 | 24 | 146 | 29 | 148 | 3.67e-18 | 87.8 |
| Msa0708930 | MtrunA17_Chr1g0149841 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 6.67e-18 | 87.0 |
| Msa0708930 | MtrunA17_Chr7g0275401 | 30.968 | 155 | 100 | 2 | 21 | 171 | 6 | 157 | 9.46e-18 | 84.0 |
| Msa0708930 | MtrunA17_Chr4g0074411 | 33.333 | 123 | 79 | 1 | 24 | 146 | 22 | 141 | 1.02e-17 | 86.7 |
| Msa0708930 | MtrunA17_Chr7g0275891 | 31.646 | 158 | 100 | 3 | 24 | 176 | 9 | 163 | 1.90e-17 | 84.0 |
| Msa0708930 | MtrunA17_Chr4g0074401 | 32.520 | 123 | 80 | 1 | 24 | 146 | 21 | 140 | 2.75e-17 | 85.5 |
| Msa0708930 | MtrunA17_Chr1g0149851 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 2.83e-17 | 85.1 |
| Msa0708930 | MtrunA17_Chr4g0049741 | 55.357 | 56 | 25 | 0 | 485 | 540 | 94 | 149 | 1.58e-12 | 68.9 |
| Msa0708930 | MtrunA17_Chr3g0134461 | 32.258 | 124 | 82 | 1 | 24 | 147 | 12 | 133 | 1.81e-12 | 66.6 |
| Msa0708930 | MtrunA17_Chr3g0132751 | 57.143 | 49 | 21 | 0 | 491 | 539 | 123 | 171 | 1.32e-11 | 66.2 |
| Msa0708930 | MtrunA17_Chr4g0074421 | 36.364 | 77 | 46 | 1 | 70 | 146 | 2 | 75 | 2.06e-11 | 63.5 |
| Msa0708930 | MtrunA17_Chr5g0400241 | 29.134 | 127 | 84 | 3 | 17 | 142 | 10 | 131 | 3.49e-11 | 65.9 |
| Msa0708930 | MtrunA17_Chr7g0256551 | 26.174 | 149 | 90 | 3 | 17 | 146 | 2 | 149 | 5.30e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708930 | AT5G61380.1 | 48.534 | 614 | 237 | 17 | 6 | 560 | 1 | 594 | 1.31e-167 | 490 |
| Msa0708930 | AT2G46790.3 | 42.188 | 128 | 74 | 0 | 18 | 145 | 31 | 158 | 1.16e-31 | 128 |
| Msa0708930 | AT2G46790.1 | 41.538 | 130 | 76 | 0 | 16 | 145 | 29 | 158 | 1.62e-31 | 128 |
| Msa0708930 | AT2G46790.1 | 69.565 | 46 | 14 | 0 | 498 | 543 | 416 | 461 | 2.79e-14 | 75.9 |
| Msa0708930 | AT5G24470.1 | 45.113 | 133 | 73 | 0 | 18 | 150 | 44 | 176 | 5.02e-31 | 127 |
| Msa0708930 | AT5G24470.1 | 55.357 | 56 | 25 | 0 | 487 | 542 | 497 | 552 | 1.47e-12 | 70.9 |
| Msa0708930 | AT5G60100.7 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 3.34e-28 | 117 |
| Msa0708930 | AT5G60100.6 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 3.34e-28 | 117 |
| Msa0708930 | AT5G60100.4 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 3.34e-28 | 117 |
| Msa0708930 | AT5G60100.5 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 7.02e-28 | 117 |
| Msa0708930 | AT5G60100.5 | 68.182 | 44 | 14 | 0 | 498 | 541 | 441 | 484 | 7.58e-13 | 71.6 |
| Msa0708930 | AT5G60100.3 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 7.02e-28 | 117 |
| Msa0708930 | AT5G60100.3 | 68.182 | 44 | 14 | 0 | 498 | 541 | 441 | 484 | 7.58e-13 | 71.6 |
| Msa0708930 | AT5G60100.1 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 7.02e-28 | 117 |
| Msa0708930 | AT5G60100.1 | 68.182 | 44 | 14 | 0 | 498 | 541 | 441 | 484 | 7.58e-13 | 71.6 |
| Msa0708930 | AT5G60100.2 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.02e-27 | 116 |
| Msa0708930 | AT5G60100.2 | 68.182 | 44 | 14 | 0 | 498 | 541 | 468 | 511 | 9.38e-13 | 71.2 |
| Msa0708930 | AT5G02810.1 | 41.406 | 128 | 75 | 0 | 18 | 145 | 72 | 199 | 7.66e-25 | 109 |
| Msa0708930 | AT5G02810.1 | 63.793 | 58 | 21 | 0 | 491 | 548 | 661 | 718 | 1.40e-15 | 80.5 |
| Msa0708930 | AT3G16857.2 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 6.40e-20 | 94.4 |
| Msa0708930 | AT3G16857.1 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 7.17e-20 | 94.0 |
| Msa0708930 | AT4G31920.1 | 35.537 | 121 | 75 | 1 | 24 | 144 | 17 | 134 | 6.73e-19 | 90.9 |
| Msa0708930 | AT2G25180.1 | 34.146 | 123 | 78 | 1 | 24 | 146 | 17 | 136 | 2.29e-18 | 89.4 |
| Msa0708930 | AT1G67710.1 | 33.333 | 123 | 79 | 1 | 24 | 146 | 11 | 130 | 6.95e-18 | 87.4 |
| Msa0708930 | AT2G01760.1 | 34.400 | 125 | 80 | 1 | 22 | 146 | 9 | 131 | 2.61e-16 | 81.6 |
| Msa0708930 | AT5G02810.2 | 63.793 | 58 | 21 | 0 | 491 | 548 | 517 | 574 | 9.44e-16 | 80.9 |
| Msa0708930 | AT2G46670.1 | 71.111 | 45 | 13 | 0 | 499 | 543 | 132 | 176 | 1.88e-15 | 75.1 |
| Msa0708930 | AT3G16857.3 | 39.326 | 89 | 51 | 1 | 59 | 147 | 2 | 87 | 5.28e-15 | 78.6 |
| Msa0708930 | AT2G46790.5 | 69.565 | 46 | 14 | 0 | 498 | 543 | 259 | 304 | 9.05e-15 | 75.9 |
| Msa0708930 | AT2G46790.4 | 69.565 | 46 | 14 | 0 | 498 | 543 | 259 | 304 | 9.05e-15 | 75.9 |
| Msa0708930 | AT2G46790.2 | 69.565 | 46 | 14 | 0 | 498 | 543 | 299 | 344 | 1.80e-14 | 75.5 |
| Msa0708930 | AT2G46790.2 | 63.415 | 41 | 15 | 0 | 105 | 145 | 1 | 41 | 1.34e-12 | 69.7 |
| Msa0708930 | AT3G62670.1 | 31.008 | 129 | 83 | 3 | 18 | 146 | 36 | 158 | 3.28e-14 | 75.5 |
| Msa0708930 | AT5G58080.1 | 34.091 | 132 | 81 | 3 | 16 | 145 | 8 | 135 | 5.16e-13 | 72.4 |
| Msa0708930 | AT2G01760.2 | 31.818 | 110 | 73 | 1 | 37 | 146 | 52 | 159 | 1.85e-12 | 69.7 |
| Msa0708930 | AT1G49190.2 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.63e-11 | 67.0 |
| Msa0708930 | AT1G49190.1 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.84e-11 | 66.2 |
Find 145 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATATTCATTGGGTAATA+GGG | 0.232593 | 4_4:-82740423 | None:intergenic |
| TTGAATAATAGTAAGAAAAT+TGG | 0.233291 | 4_4:+82735181 | Msa0708930:CDS |
| GCACATATTCATTGGGTAAT+AGG | 0.254453 | 4_4:-82740424 | None:intergenic |
| ATCCTTAGTTCGCTCTTCTT+TGG | 0.263156 | 4_4:-82739760 | None:intergenic |
| ATTGTTGTCTCTGCATTAAT+TGG | 0.263416 | 4_4:+82740834 | Msa0708930:three_prime_UTR |
| GAACAATAGGTCCCATTTCT+TGG | 0.266361 | 4_4:-82740114 | None:intergenic |
| CGCTCACCTCTTGCTCTTGT+TGG | 0.270627 | 4_4:-82738054 | None:intergenic |
| GGACAATGAACCCCATTTCT+TGG | 0.284413 | 4_4:-82740195 | None:intergenic |
| TTGTACTCCACCTGCATCTT+TGG | 0.287125 | 4_4:+82740032 | Msa0708930:CDS |
| ACTCCCGATGACAAATAATA+TGG | 0.320119 | 4_4:-82740258 | None:intergenic |
| GGTTGTAAGCACATATTCAT+TGG | 0.352891 | 4_4:-82740432 | None:intergenic |
| AGTCTTATACATCCAAGAAA+TGG | 0.355720 | 4_4:+82740102 | Msa0708930:CDS |
| CAACCAGGTCAGATTCCTTC+AGG | 0.363330 | 4_4:+82740450 | Msa0708930:CDS |
| AACTAAATCTTACTTATAAT+AGG | 0.364003 | 4_4:-82736278 | None:intergenic |
| TGGCCATCACTTGCTATATG+AGG | 0.368212 | 4_4:+82740854 | Msa0708930:three_prime_UTR |
| CAAAATTAAGTAAAGTTGAT+AGG | 0.368608 | 4_4:+82740508 | Msa0708930:CDS |
| CATCAGTGTCATCGGAGAAC+AGG | 0.370393 | 4_4:-82737988 | None:intergenic |
| GCGAACTAAGGATTGGGGTT+GGG | 0.374057 | 4_4:+82739770 | Msa0708930:CDS |
| CGAACTAAGGATTGGGGTTG+GGG | 0.375308 | 4_4:+82739771 | Msa0708930:CDS |
| TTCTGCGCAATTCTTTGTCT+CGG | 0.375322 | 4_4:-82736253 | None:intergenic |
| CATTCTGATGCATGATCATC+TGG | 0.375477 | 4_4:-82738871 | None:intergenic |
| TGTCTGATGCATCCAAGAAA+TGG | 0.381220 | 4_4:+82740183 | Msa0708930:CDS |
| TGATGAAAATGAAGATGATC+AGG | 0.381925 | 4_4:+82740710 | Msa0708930:CDS |
| CAGCATGAACAATCCCTTCA+AGG | 0.386500 | 4_4:-82739843 | None:intergenic |
| GTCTGATGCATCCAAGAAAT+GGG | 0.388638 | 4_4:+82740184 | Msa0708930:CDS |
| CTCTTGAGATGTTGTTATCA+AGG | 0.389075 | 4_4:+82735286 | Msa0708930:CDS |
| CTAATGAACTCTTAAATTTG+TGG | 0.392317 | 4_4:+82736479 | Msa0708930:CDS |
| GGTGTTAATGTGGATCTTAA+TGG | 0.393979 | 4_4:+82740666 | Msa0708930:CDS |
| ATCTTCATGCCCTTCTTCTT+CGG | 0.403681 | 4_4:-82736215 | None:intergenic |
| TATCCATATTATTTGTCATC+GGG | 0.404835 | 4_4:+82740255 | Msa0708930:CDS |
| CATATCGAGCTCAGAACAAT+AGG | 0.405798 | 4_4:-82740127 | None:intergenic |
| TGCCTCTATTCCTTCTTCAA+TGG | 0.406096 | 4_4:+82740808 | Msa0708930:three_prime_UTR |
| TATGAAACTTTCAACTGCAT+TGG | 0.418908 | 4_4:-82741006 | None:intergenic |
| GATCCTTGATAGGATAATAT+AGG | 0.434563 | 4_4:-82740785 | None:intergenic |
| AGAAGAGCGAACTAAGGATT+GGG | 0.437707 | 4_4:+82739764 | Msa0708930:CDS |
| CCGTCTGGCTATGAGATCAT+TGG | 0.443274 | 4_4:+82740948 | Msa0708930:three_prime_UTR |
| ACCAGGTATACTATTGCTGC+TGG | 0.455033 | 4_4:-82739989 | None:intergenic |
| AATAGAGGCAGATCCTTGAT+AGG | 0.457498 | 4_4:-82740795 | None:intergenic |
| TTCCATTGAAGAAGGAATAG+AGG | 0.462169 | 4_4:-82740810 | None:intergenic |
| GTTGTAAGCACATATTCATT+GGG | 0.463517 | 4_4:-82740431 | None:intergenic |
| TCTGCGCAATTCTTTGTCTC+GGG | 0.465345 | 4_4:-82736252 | None:intergenic |
| AACTTCCATCCTCACATGTA+AGG | 0.465807 | 4_4:-82739875 | None:intergenic |
| TCATTTACTCCATGGACATC+AGG | 0.468519 | 4_4:-82738898 | None:intergenic |
| TGAAGATGATCAGGGATGCT+TGG | 0.471740 | 4_4:+82740719 | Msa0708930:CDS |
| AGAAGCACTATTCAAGAGAC+AGG | 0.475811 | 4_4:+82738022 | Msa0708930:CDS |
| TGATACATTTGCGCCGATGA+AGG | 0.476546 | 4_4:-82740297 | None:intergenic |
| CCCAGCAGCAATAGTATACC+TGG | 0.477013 | 4_4:+82739988 | Msa0708930:CDS |
| CTTCTTTGGAGCAAATGAAA+AGG | 0.478124 | 4_4:-82739746 | None:intergenic |
| CTCCAAAGAAGAGCGAACTA+AGG | 0.481928 | 4_4:+82739758 | Msa0708930:CDS |
| GTCTTATACATCCAAGAAAT+GGG | 0.483992 | 4_4:+82740103 | Msa0708930:CDS |
| GTTAAATTATGACTTTGATC+TGG | 0.486159 | 4_4:+82737925 | Msa0708930:CDS |
| AAGAAGAGCGAACTAAGGAT+TGG | 0.487567 | 4_4:+82739763 | Msa0708930:CDS |
| ACACCCTCATCAATTATAGC+TGG | 0.489507 | 4_4:+82740893 | Msa0708930:three_prime_UTR |
| TCATGTCGTCGAAATGACTA+AGG | 0.490307 | 4_4:+82740751 | Msa0708930:exon |
| ATGTTAGATCTTTCACGCTC+AGG | 0.497470 | 4_4:-82740216 | None:intergenic |
| TCATGCCCTTCTTCTTCGGA+AGG | 0.501684 | 4_4:-82736211 | None:intergenic |
| AAGAGTTCATTAGTGCGTAA+AGG | 0.501760 | 4_4:-82736469 | None:intergenic |
| TCTATTGAACTGATAAAAGC+AGG | 0.502847 | 4_4:+82741041 | Msa0708930:three_prime_UTR |
| CTCTCAATAGATAAAGAACC+AGG | 0.507067 | 4_4:-82740006 | None:intergenic |
| CTGTTTGTATTGTTATCGCT+AGG | 0.509038 | 4_4:-82737959 | None:intergenic |
| GTTCCTATATTATCCTATCA+AGG | 0.509571 | 4_4:+82740782 | Msa0708930:three_prime_UTR |
| GGTCAGTCATGGCCATCCTT+CGG | 0.511134 | 4_4:+82740471 | Msa0708930:CDS |
| TGTGAGGCTTCCAAAGATGC+AGG | 0.515634 | 4_4:-82740042 | None:intergenic |
| TCATGTTATGATGCCTTCAT+CGG | 0.517737 | 4_4:+82740284 | Msa0708930:CDS |
| AGTTGGCCTTCCGAAGAAGA+AGG | 0.517951 | 4_4:+82736205 | Msa0708930:CDS |
| AGAAAATTAGGTATGTCAAT+CGG | 0.521151 | 4_4:+82740586 | Msa0708930:CDS |
| CAGCATGATTCTGCAGGTCG+TGG | 0.521808 | 4_4:-82740329 | None:intergenic |
| AGGATAATATAGGAACTGAT+TGG | 0.522297 | 4_4:-82740775 | None:intergenic |
| GGAAACTATAGATCTCATAC+TGG | 0.527599 | 4_4:+82736178 | Msa0708930:CDS |
| ATAGCCAGACGGATCATTTG+AGG | 0.529780 | 4_4:-82740937 | None:intergenic |
| GTTGTTAAGTGCTTGAGACT+CGG | 0.531794 | 4_4:+82736424 | Msa0708930:CDS |
| GCTTCCTCAAATGATCCGTC+TGG | 0.532720 | 4_4:+82740933 | Msa0708930:three_prime_UTR |
| GACATCATTCCGGTGGTATG+AGG | 0.533530 | 4_4:-82740396 | None:intergenic |
| CATGAAGCATGTGCTCAACA+AGG | 0.536975 | 4_4:+82739901 | Msa0708930:CDS |
| TTATCCATATTATTTGTCAT+CGG | 0.538736 | 4_4:+82740254 | Msa0708930:CDS |
| TGCTAATGCTGATGCTGTTG+AGG | 0.539629 | 4_4:+82738843 | Msa0708930:CDS |
| AGCGAACTAAGGATTGGGGT+TGG | 0.541428 | 4_4:+82739769 | Msa0708930:CDS |
| GATCTCATACTGGCTGAAGT+TGG | 0.542729 | 4_4:+82736188 | Msa0708930:CDS |
| ATAGGGGTAGGACATCATTC+CGG | 0.544576 | 4_4:-82740406 | None:intergenic |
| CCAGGTATACTATTGCTGCT+GGG | 0.549234 | 4_4:-82739988 | None:intergenic |
| CGAGTTATCATCAGTGTCAT+CGG | 0.550154 | 4_4:-82737996 | None:intergenic |
| GGCCATCACTTGCTATATGA+GGG | 0.551679 | 4_4:+82740855 | Msa0708930:three_prime_UTR |
| ATGAATATGTGCTTACAACC+AGG | 0.553880 | 4_4:+82740435 | Msa0708930:CDS |
| GAATGTCAGCCTGATGTCCA+TGG | 0.557310 | 4_4:+82738889 | Msa0708930:CDS |
| TGTGGACGCACATGTGGAGA+AGG | 0.558944 | 4_4:+82736497 | Msa0708930:CDS |
| CTGCATTGGAAATTGTCGAC+AGG | 0.559018 | 4_4:-82740992 | None:intergenic |
| CACCCTCATCAATTATAGCT+GGG | 0.559589 | 4_4:+82740894 | Msa0708930:three_prime_UTR |
| ATGTACCAGCATGATTCTGC+AGG | 0.560138 | 4_4:-82740335 | None:intergenic |
| CACGACCTGCAGAATCATGC+TGG | 0.560739 | 4_4:+82740330 | Msa0708930:CDS |
| TGATGCACTGAATGCAGAGA+AGG | 0.561148 | 4_4:+82736157 | Msa0708930:CDS |
| ATCAGTCCAACAAGAGCAAG+AGG | 0.563155 | 4_4:+82738048 | Msa0708930:CDS |
| CTGGCTGATCATTTACTCCA+TGG | 0.563740 | 4_4:-82738906 | None:intergenic |
| TCGGATGAACTTCCGAAGGA+TGG | 0.565075 | 4_4:-82740483 | None:intergenic |
| ATCAGTGTCATCGGAGAACA+GGG | 0.565153 | 4_4:-82737987 | None:intergenic |
| TAAATTTGTGGACGCACATG+TGG | 0.565713 | 4_4:+82736491 | Msa0708930:CDS |
| TGAAAGACGGCCTCGTGTGA+GGG | 0.569464 | 4_4:+82740620 | Msa0708930:CDS |
| AATAGTAAGAAAATTGGTGA+TGG | 0.572128 | 4_4:+82735187 | Msa0708930:CDS |
| TGATTCAAATACCTCTCAAG+AGG | 0.572978 | 4_4:+82735252 | Msa0708930:CDS |
| TGCTTCGGATGAACTTCCGA+AGG | 0.577350 | 4_4:-82740487 | None:intergenic |
| ATTCATTGGGTAATAGGGGT+AGG | 0.578636 | 4_4:-82740418 | None:intergenic |
| AGATTCCTTCAGGTCAGTCA+TGG | 0.579147 | 4_4:+82740460 | Msa0708930:CDS |
| CAGTTTGTCAGTAAGATGAA+TGG | 0.579522 | 4_4:+82740645 | Msa0708930:CDS |
| CAGGTATACTATTGCTGCTG+GGG | 0.581806 | 4_4:-82739987 | None:intergenic |
| GGAAACAACTTGCTGAAAGA+CGG | 0.584344 | 4_4:+82740607 | Msa0708930:CDS |
| CTGAAAGACGGCCTCGTGTG+AGG | 0.586756 | 4_4:+82740619 | Msa0708930:CDS |
| TGACCCAGCTATAATTGATG+AGG | 0.588955 | 4_4:-82740897 | None:intergenic |
| GAAAGACGGCCTCGTGTGAG+GGG | 0.590286 | 4_4:+82740621 | Msa0708930:CDS |
| TGCCGCCTTACATGTGAGGA+TGG | 0.593042 | 4_4:+82739870 | Msa0708930:CDS |
| GATGGCCATGACTGACCTGA+AGG | 0.597115 | 4_4:-82740465 | None:intergenic |
| GTTGGCCTTCCGAAGAAGAA+GGG | 0.599234 | 4_4:+82736206 | Msa0708930:CDS |
| ACATATTCATTGGGTAATAG+GGG | 0.603859 | 4_4:-82740422 | None:intergenic |
| ATGAAGCATGTGCTCAACAA+GGG | 0.604325 | 4_4:+82739902 | Msa0708930:CDS |
| AGTGATGTCTGCACAAGATG+AGG | 0.604714 | 4_4:+82736393 | Msa0708930:intron |
| TCATCATATTCAATGGAAGG+AGG | 0.605016 | 4_4:-82740693 | None:intergenic |
| TAAGATGAATGGTGTTAATG+TGG | 0.608624 | 4_4:+82740656 | Msa0708930:CDS |
| AACCCTCATATAGCAAGTGA+TGG | 0.615927 | 4_4:-82740857 | None:intergenic |
| TAATTGATGAGGGTGTACAC+TGG | 0.616873 | 4_4:-82740886 | None:intergenic |
| GATGAAAATGAAGATGATCA+GGG | 0.619647 | 4_4:+82740711 | Msa0708930:CDS |
| TTGTTGATAGAAGTAAAGTG+AGG | 0.622065 | 4_4:+82735212 | Msa0708930:CDS |
| CAAGGCGGTCCTCATACCAC+CGG | 0.623009 | 4_4:+82740387 | Msa0708930:CDS |
| CATGGAGTAAATGATCAGCC+AGG | 0.623977 | 4_4:+82738907 | Msa0708930:CDS |
| GACCCAGCTATAATTGATGA+GGG | 0.627806 | 4_4:-82740896 | None:intergenic |
| CACTACAATCATGTTCCACA+AGG | 0.630620 | 4_4:+82740369 | Msa0708930:CDS |
| GGACGCACATGTGGAGAAGG+AGG | 0.632559 | 4_4:+82736500 | Msa0708930:CDS |
| GTGGTATGAGGACCGCCTTG+TGG | 0.638168 | 4_4:-82740384 | None:intergenic |
| TGACCTGAAGGAATCTGACC+TGG | 0.642802 | 4_4:-82740453 | None:intergenic |
| CATGTCGTCGAAATGACTAA+GGG | 0.645701 | 4_4:+82740752 | Msa0708930:exon |
| CATGTGGAGAAGGAGGCGCA+TGG | 0.648174 | 4_4:+82736507 | Msa0708930:CDS |
| GAGGCTTCCAAAGATGCAGG+TGG | 0.655405 | 4_4:-82740039 | None:intergenic |
| CATTGGAAATTGTCGACAGG+AGG | 0.657408 | 4_4:-82740989 | None:intergenic |
| TTCCATCCTCACATGTAAGG+CGG | 0.658020 | 4_4:-82739872 | None:intergenic |
| ACAAACTGTCCCCTCACACG+AGG | 0.662346 | 4_4:-82740630 | None:intergenic |
| CCAATGATCTCATAGCCAGA+CGG | 0.667084 | 4_4:-82740948 | None:intergenic |
| TGAAGCATGTGCTCAACAAG+GGG | 0.671878 | 4_4:+82739903 | Msa0708930:CDS |
| CTGGCTATGAGATCATTGGA+AGG | 0.677122 | 4_4:+82740952 | Msa0708930:three_prime_UTR |
| TACAATCATGTTCCACAAGG+CGG | 0.678482 | 4_4:+82740372 | Msa0708930:CDS |
| GGGGTAGGACATCATTCCGG+TGG | 0.679136 | 4_4:-82740403 | None:intergenic |
| TCTGATGCATCCAAGAAATG+GGG | 0.684504 | 4_4:+82740185 | Msa0708930:CDS |
| TCTGATGCATGATCATCTGG+AGG | 0.693536 | 4_4:-82738868 | None:intergenic |
| GAAGAGCGAACTAAGGATTG+GGG | 0.699832 | 4_4:+82739765 | Msa0708930:CDS |
| TCTCAAGCACTTAACAACAA+CGG | 0.708874 | 4_4:-82736419 | None:intergenic |
| TAAGTGCTTGAGACTCGGAG+CGG | 0.719512 | 4_4:+82736429 | Msa0708930:CDS |
| ACAATGCCGCCTTACATGTG+AGG | 0.719839 | 4_4:+82739866 | Msa0708930:CDS |
| TGTCGACAGGAGGTATACAG+AGG | 0.729047 | 4_4:-82740979 | None:intergenic |
| AGTGTCATCGGAGAACAGGG+TGG | 0.756718 | 4_4:-82737984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTGATTTATTTTTTTTTTT+TGG | + | chr4_4:82735136-82735155 | Msa0708930:five_prime_UTR | 10.0% |
| !!! | TTTATTTTTTTTTTTTGGTA+TGG | + | chr4_4:82735141-82735160 | Msa0708930:exon | 10.0% |
| !!! | ATTTTATATCAAAAAAATAG+AGG | + | chr4_4:82737296-82737315 | Msa0708930:intron | 10.0% |
| !!! | TCATTATTTGTTTAATTTTA+TGG | - | chr4_4:82739313-82739332 | None:intergenic | 10.0% |
| !!! | AAACAAATAATGATTTATTT+TGG | + | chr4_4:82739320-82739339 | Msa0708930:intron | 10.0% |
| !! | TTGAATAATAGTAAGAAAAT+TGG | + | chr4_4:82735181-82735200 | Msa0708930:CDS | 15.0% |
| !!! | TTTTTCTATCAATTAAAAAC+TGG | + | chr4_4:82735987-82736006 | Msa0708930:intron | 15.0% |
| !! | AACTAAATCTTACTTATAAT+AGG | - | chr4_4:82736281-82736300 | None:intergenic | 15.0% |
| !!! | ATTTAACTCAAGAATTTTAT+TGG | - | chr4_4:82736324-82736343 | None:intergenic | 15.0% |
| !! | TTCTAAATTTCTAAATACAA+TGG | - | chr4_4:82736713-82736732 | None:intergenic | 15.0% |
| !!! | TCTTTTTTAAAAAATTGTAC+TGG | - | chr4_4:82736851-82736870 | None:intergenic | 15.0% |
| !! | TTTCAAATTAATTCAAACTA+AGG | - | chr4_4:82736960-82736979 | None:intergenic | 15.0% |
| !!! | TTAGTTTGAATTAATTTGAA+AGG | + | chr4_4:82736959-82736978 | Msa0708930:intron | 15.0% |
| !! | TTATAATATTCTAACATGTA+TGG | + | chr4_4:82737053-82737072 | Msa0708930:intron | 15.0% |
| !! | TATAATATTCTAACATGTAT+GGG | + | chr4_4:82737054-82737073 | Msa0708930:intron | 15.0% |
| !!! | AGTTTAATTTAAGAAATCTT+CGG | - | chr4_4:82738162-82738181 | None:intergenic | 15.0% |
| !! | AGATTTCTTAAATTAAACTT+TGG | + | chr4_4:82738163-82738182 | Msa0708930:intron | 15.0% |
| !! | AAAAAATCTGTTGAAAATTT+GGG | - | chr4_4:82739625-82739644 | None:intergenic | 15.0% |
| !! | TAAAAAATCTGTTGAAAATT+TGG | - | chr4_4:82739626-82739645 | None:intergenic | 15.0% |
| !!! | AAATTTTCAACAGATTTTTT+AGG | + | chr4_4:82739625-82739644 | Msa0708930:intron | 15.0% |
| !! | AATATCAGAGTATAAACATT+TGG | + | chr4_4:82735958-82735977 | Msa0708930:intron | 20.0% |
| !!! | TTATTGATTTTGTTATTCCT+AGG | + | chr4_4:82736015-82736034 | Msa0708930:intron | 20.0% |
| !!! | TATTGATTTTGTTATTCCTA+GGG | + | chr4_4:82736016-82736035 | Msa0708930:intron | 20.0% |
| !! | AGTTAAATCAAATTATGTTC+TGG | + | chr4_4:82736336-82736355 | Msa0708930:intron | 20.0% |
| !! | ACATTGTGCAAATATATAAA+TGG | + | chr4_4:82736622-82736641 | Msa0708930:intron | 20.0% |
| !! | AAATATATAAATGGATGTAG+AGG | + | chr4_4:82736631-82736650 | Msa0708930:intron | 20.0% |
| !! | GTGATAACAAAAAATGAAAA+TGG | - | chr4_4:82736753-82736772 | None:intergenic | 20.0% |
| !! | AAAAAATTGTACTGGAAATA+GGG | - | chr4_4:82736843-82736862 | None:intergenic | 20.0% |
| !! | TAAAAAATTGTACTGGAAAT+AGG | - | chr4_4:82736844-82736863 | None:intergenic | 20.0% |
| !! | AAAACATAATGATAACTATC+TGG | - | chr4_4:82737214-82737233 | None:intergenic | 20.0% |
| !! | TATGAGGTCAATAATTATAA+GGG | - | chr4_4:82737445-82737464 | None:intergenic | 20.0% |
| !!! | AGATTTTCATATGAACTTAT+GGG | + | chr4_4:82737709-82737728 | Msa0708930:intron | 20.0% |
| !! | ATCAACCATACAATATAATA+TGG | + | chr4_4:82737733-82737752 | Msa0708930:intron | 20.0% |
| !! | ACATTCCATATTATATTGTA+TGG | - | chr4_4:82737741-82737760 | None:intergenic | 20.0% |
| !! | ATATAATATGGAATGTAGAA+TGG | + | chr4_4:82737745-82737764 | Msa0708930:intron | 20.0% |
| !!! | AATAGCTTTTATATTTTTGC+TGG | + | chr4_4:82737876-82737895 | Msa0708930:intron | 20.0% |
| !!! | CATAGATTAATCAATTTTCA+AGG | - | chr4_4:82738137-82738156 | None:intergenic | 20.0% |
| !! | TATTGCATTTACAAAGAAAA+GGG | - | chr4_4:82738262-82738281 | None:intergenic | 20.0% |
| !! | ATATTGCATTTACAAAGAAA+AGG | - | chr4_4:82738263-82738282 | None:intergenic | 20.0% |
| !!! | TATGATAAATTGTTGATTAC+TGG | + | chr4_4:82738334-82738353 | Msa0708930:intron | 20.0% |
| !!! | TATGTATGTTCCTTTAAAAA+TGG | - | chr4_4:82738374-82738393 | None:intergenic | 20.0% |
| !!! | GCAGCTTAAAATTTATTTTA+GGG | - | chr4_4:82738427-82738446 | None:intergenic | 20.0% |
| !!! | TGCAGCTTAAAATTTATTTT+AGG | - | chr4_4:82738428-82738447 | None:intergenic | 20.0% |
| !! | ACATTAATACAAAAACAAAG+AGG | + | chr4_4:82738541-82738560 | Msa0708930:intron | 20.0% |
| !! | GAAGTTATATAGTTATTGAT+AGG | + | chr4_4:82738990-82739009 | Msa0708930:intron | 20.0% |
| !! | AAAAATCTGTTGAAAATTTG+GGG | - | chr4_4:82739624-82739643 | None:intergenic | 20.0% |
| !! | TTATCCATATTATTTGTCAT+CGG | + | chr4_4:82740254-82740273 | Msa0708930:CDS | 20.0% |
| !!! | AACTTTACTTAATTTTGCTT+CGG | - | chr4_4:82740505-82740524 | None:intergenic | 20.0% |
| !!! | CAAAATTAAGTAAAGTTGAT+AGG | + | chr4_4:82740508-82740527 | Msa0708930:CDS | 20.0% |
| !!! | TTCATTTTCATCATATTCAA+TGG | - | chr4_4:82740703-82740722 | None:intergenic | 20.0% |
| ! | AATAGTAAGAAAATTGGTGA+TGG | + | chr4_4:82735187-82735206 | Msa0708930:CDS | 25.0% |
| ! | CCATTCATAATCAACAAATT+AGG | - | chr4_4:82735367-82735386 | None:intergenic | 25.0% |
| !!! | CCTAATTTGTTGATTATGAA+TGG | + | chr4_4:82735364-82735383 | Msa0708930:intron | 25.0% |
| ! | AATCAAATTATCCTAGAGAA+TGG | - | chr4_4:82735616-82735635 | None:intergenic | 25.0% |
| !!! | TTTATTGTTTTTCACCTTTG+AGG | + | chr4_4:82735659-82735678 | Msa0708930:intron | 25.0% |
| ! | TAAACATTCTAGATTCTCAT+CGG | + | chr4_4:82735719-82735738 | Msa0708930:intron | 25.0% |
| !! | ATATTGATTAATTTCCACCA+TGG | + | chr4_4:82735768-82735787 | Msa0708930:intron | 25.0% |
| ! | CAAAAATCCATCATATAAAC+AGG | - | chr4_4:82735879-82735898 | None:intergenic | 25.0% |
| !!! | CTGTTTATATGATGGATTTT+TGG | + | chr4_4:82735877-82735896 | Msa0708930:intron | 25.0% |
| !!! | ATTGATTTTGTTATTCCTAG+GGG | + | chr4_4:82736017-82736036 | Msa0708930:intron | 25.0% |
| ! | CTAATGAACTCTTAAATTTG+TGG | + | chr4_4:82736479-82736498 | Msa0708930:CDS | 25.0% |
| ! | AAGATTCATAGATATGAAGT+TGG | - | chr4_4:82736543-82736562 | None:intergenic | 25.0% |
| !!! | AGTTGGTGACAAATTAATTA+TGG | - | chr4_4:82736588-82736607 | None:intergenic | 25.0% |
| !!! | TTTAAATTTTGACAATCTGC+AGG | - | chr4_4:82736937-82736956 | None:intergenic | 25.0% |
| !!! | TAGCATTTTGAGAATTTCTA+TGG | + | chr4_4:82737127-82737146 | Msa0708930:intron | 25.0% |
| !!! | ATTTTGAGAATTTCTATGGT+AGG | + | chr4_4:82737131-82737150 | Msa0708930:intron | 25.0% |
| !! | AATTTCTATGGTAGGTTTTA+AGG | + | chr4_4:82737139-82737158 | Msa0708930:intron | 25.0% |
| !! | AAATTTCTGGATTTCTGATT+GGG | + | chr4_4:82737183-82737202 | Msa0708930:intron | 25.0% |
| !! | TTTTTACTTATCCAACCATT+TGG | + | chr4_4:82737231-82737250 | Msa0708930:intron | 25.0% |
| !! | GGTTATGAGTCTTATATTAA+GGG | - | chr4_4:82737341-82737360 | None:intergenic | 25.0% |
| !! | AGGTTATGAGTCTTATATTA+AGG | - | chr4_4:82737342-82737361 | None:intergenic | 25.0% |
| !!! | TGTATATTAGCTTTTCGAAT+TGG | + | chr4_4:82737419-82737438 | Msa0708930:intron | 25.0% |
| ! | GTATGAGGTCAATAATTATA+AGG | - | chr4_4:82737446-82737465 | None:intergenic | 25.0% |
| !! | GATTTTCATAGACATAAAGA+TGG | - | chr4_4:82737583-82737602 | None:intergenic | 25.0% |
| !!! | GACTTTTTCAGATTATAAGT+TGG | + | chr4_4:82737657-82737676 | Msa0708930:intron | 25.0% |
| !! | GAGATTTTCATATGAACTTA+TGG | + | chr4_4:82737708-82737727 | Msa0708930:intron | 25.0% |
| !! | GATTTTCATATGAACTTATG+GGG | + | chr4_4:82737710-82737729 | Msa0708930:intron | 25.0% |
| !! | ATTTCAATTTGAAATCAGGA+AGG | - | chr4_4:82737859-82737878 | None:intergenic | 25.0% |
| !! | AGCTATTTCAATTTGAAATC+AGG | - | chr4_4:82737863-82737882 | None:intergenic | 25.0% |
| ! | GTTAAATTATGACTTTGATC+TGG | + | chr4_4:82737925-82737944 | Msa0708930:CDS | 25.0% |
| !! | TTATCATACCAATAACTTGT+GGG | - | chr4_4:82738322-82738341 | None:intergenic | 25.0% |
| ! | TTTATCATACCAATAACTTG+TGG | - | chr4_4:82738323-82738342 | None:intergenic | 25.0% |
| !!! | ATGCAAATGACCATTTTTAA+AGG | + | chr4_4:82738361-82738380 | Msa0708930:intron | 25.0% |
| ! | TAATACAAAAACAAAGAGGA+AGG | + | chr4_4:82738545-82738564 | Msa0708930:intron | 25.0% |
| ! | AATACAAAAACAAAGAGGAA+GGG | + | chr4_4:82738546-82738565 | Msa0708930:intron | 25.0% |
| ! | ATGAAACAGAATTGCTTAAA+GGG | + | chr4_4:82739086-82739105 | Msa0708930:intron | 25.0% |
| ! | TGGAATTCAATAACTAGAAT+GGG | - | chr4_4:82739293-82739312 | None:intergenic | 25.0% |
| ! | ATGGAATTCAATAACTAGAA+TGG | - | chr4_4:82739294-82739313 | None:intergenic | 25.0% |
| ! | AGATTAGAAAGTAGAAACTA+TGG | - | chr4_4:82739442-82739461 | None:intergenic | 25.0% |
| ! | TTCTACTTTCTAATCTGAAA+TGG | + | chr4_4:82739446-82739465 | Msa0708930:intron | 25.0% |
| !! | ATAAAATTTTATTCAGCCTC+AGG | - | chr4_4:82739652-82739671 | None:intergenic | 25.0% |
| ! | TCAGAGAGAACAATTAAAAA+TGG | - | chr4_4:82739699-82739718 | None:intergenic | 25.0% |
| ! | TATCCATATTATTTGTCATC+GGG | + | chr4_4:82740255-82740274 | Msa0708930:CDS | 25.0% |
| !!! | GCTGTTTTGATAAGAAAATT+AGG | + | chr4_4:82740574-82740593 | Msa0708930:CDS | 25.0% |
| ! | AGAAAATTAGGTATGTCAAT+CGG | + | chr4_4:82740586-82740605 | Msa0708930:CDS | 25.0% |
| !! | TTTTCATCATATTCAATGGA+AGG | - | chr4_4:82740699-82740718 | None:intergenic | 25.0% |
| ! | TTGTTGATAGAAGTAAAGTG+AGG | + | chr4_4:82735212-82735231 | Msa0708930:CDS | 30.0% |
| TGTTAGCCATATTTGTATGT+TGG | + | chr4_4:82735473-82735492 | Msa0708930:intron | 30.0% | |
| AAACATTCTAGATTCTCATC+GGG | + | chr4_4:82735720-82735739 | Msa0708930:intron | 30.0% | |
| TGATAGGTGTTTGCAATTTA+TGG | - | chr4_4:82735824-82735843 | None:intergenic | 30.0% | |
| !!! | TTATATGATGGATTTTTGGC+TGG | + | chr4_4:82735881-82735900 | Msa0708930:intron | 30.0% |
| TTTAGACACACTGTTATCAA+TGG | - | chr4_4:82735927-82735946 | None:intergenic | 30.0% | |
| !!! | TTGATTTTGTTATTCCTAGG+GGG | + | chr4_4:82736018-82736037 | Msa0708930:intron | 30.0% |
| AGATGTTCAAAACATTGATG+AGG | - | chr4_4:82736363-82736382 | None:intergenic | 30.0% | |
| TCAGAAATCCAGAAATTTGT+AGG | - | chr4_4:82737181-82737200 | None:intergenic | 30.0% | |
| ! | CAAATTTCTGGATTTCTGAT+TGG | + | chr4_4:82737182-82737201 | Msa0708930:intron | 30.0% |
| TACAAGATTAACCAAATGGT+TGG | - | chr4_4:82737245-82737264 | None:intergenic | 30.0% | |
| ACCATTTGGTTAATCTTGTA+TGG | + | chr4_4:82737245-82737264 | Msa0708930:intron | 30.0% | |
| CCATTTGGTTAATCTTGTAT+GGG | + | chr4_4:82737246-82737265 | Msa0708930:intron | 30.0% | |
| CATTTGGTTAATCTTGTATG+GGG | + | chr4_4:82737247-82737266 | Msa0708930:intron | 30.0% | |
| TGATATAAAATATGGCTTCC+CGG | - | chr4_4:82737287-82737306 | None:intergenic | 30.0% | |
| ! | ATGAGTCTTATATTAAGGGA+CGG | - | chr4_4:82737337-82737356 | None:intergenic | 30.0% |
| TTTCTTAATACCCATGAATC+AGG | - | chr4_4:82737362-82737381 | None:intergenic | 30.0% | |
| AATCACATAATGCAAGTATG+AGG | - | chr4_4:82737461-82737480 | None:intergenic | 30.0% | |
| ! | TACGAAAGGGTCTTATATAT+AGG | + | chr4_4:82737505-82737524 | Msa0708930:intron | 30.0% |
| ! | ACGAAAGGGTCTTATATATA+GGG | + | chr4_4:82737506-82737525 | Msa0708930:intron | 30.0% |
| ! | TATCATACCAATAACTTGTG+GGG | - | chr4_4:82738321-82738340 | None:intergenic | 30.0% |
| !!! | TATTTTAGGGCAACTAATTC+AGG | - | chr4_4:82738414-82738433 | None:intergenic | 30.0% |
| TTAGCAATAGTAGACTGAAA+AGG | - | chr4_4:82738829-82738848 | None:intergenic | 30.0% | |
| TATAGTTATTGATAGGAACC+CGG | + | chr4_4:82738997-82739016 | Msa0708930:intron | 30.0% | |
| CATGAAACAGAATTGCTTAA+AGG | + | chr4_4:82739085-82739104 | Msa0708930:intron | 30.0% | |
| ! | TATTTTCTCCTCTCTTAATC+CGG | + | chr4_4:82739217-82739236 | Msa0708930:intron | 30.0% |
| ! | AATACTTTGGAAGAAGTAGT+TGG | - | chr4_4:82739260-82739279 | None:intergenic | 30.0% |
| ACATGTAACTGAATTACTTG+TGG | + | chr4_4:82739397-82739416 | Msa0708930:intron | 30.0% | |
| ! | ATTTCCAACAAAATCCCTTT+TGG | - | chr4_4:82739479-82739498 | None:intergenic | 30.0% |
| ATGCTAAAAAGAAACCTTGA+AGG | + | chr4_4:82739829-82739848 | Msa0708930:CDS | 30.0% | |
| TGCTAAAAAGAAACCTTGAA+GGG | + | chr4_4:82739830-82739849 | Msa0708930:CDS | 30.0% | |
| ! | GCAAATTTTCTTCTTCGTAA+CGG | - | chr4_4:82740074-82740093 | None:intergenic | 30.0% |
| ACATATTCATTGGGTAATAG+GGG | - | chr4_4:82740425-82740444 | None:intergenic | 30.0% | |
| CACATATTCATTGGGTAATA+GGG | - | chr4_4:82740426-82740445 | None:intergenic | 30.0% | |
| GTTGTAAGCACATATTCATT+GGG | - | chr4_4:82740434-82740453 | None:intergenic | 30.0% | |
| ! | TAAGATGAATGGTGTTAATG+TGG | + | chr4_4:82740656-82740675 | Msa0708930:CDS | 30.0% |
| TGATGAAAATGAAGATGATC+AGG | + | chr4_4:82740710-82740729 | Msa0708930:CDS | 30.0% | |
| GATGAAAATGAAGATGATCA+GGG | + | chr4_4:82740711-82740730 | Msa0708930:CDS | 30.0% | |
| AGGATAATATAGGAACTGAT+TGG | - | chr4_4:82740778-82740797 | None:intergenic | 30.0% | |
| GTTCCTATATTATCCTATCA+AGG | + | chr4_4:82740782-82740801 | Msa0708930:three_prime_UTR | 30.0% | |
| GATCCTTGATAGGATAATAT+AGG | - | chr4_4:82740788-82740807 | None:intergenic | 30.0% | |
| ! | CAACAATTTTCCATTGAAGA+AGG | - | chr4_4:82740821-82740840 | None:intergenic | 30.0% |
| ATTGTTGTCTCTGCATTAAT+TGG | + | chr4_4:82740834-82740853 | Msa0708930:three_prime_UTR | 30.0% | |
| TATGAAACTTTCAACTGCAT+TGG | - | chr4_4:82741009-82741028 | None:intergenic | 30.0% | |
| TCTATTGAACTGATAAAAGC+AGG | + | chr4_4:82741041-82741060 | Msa0708930:three_prime_UTR | 30.0% | |
| !!! | TTTTTTGGTATGGAGAGTGA+AGG | + | chr4_4:82735151-82735170 | Msa0708930:exon | 35.0% |
| !! | TTTTTGGTATGGAGAGTGAA+GGG | + | chr4_4:82735152-82735171 | Msa0708930:exon | 35.0% |
| TGATTCAAATACCTCTCAAG+AGG | + | chr4_4:82735252-82735271 | Msa0708930:CDS | 35.0% | |
| AAGTGTAAAAACCTCTTGAG+AGG | - | chr4_4:82735266-82735285 | None:intergenic | 35.0% | |
| CTCTTGAGATGTTGTTATCA+AGG | + | chr4_4:82735286-82735305 | Msa0708930:CDS | 35.0% | |
| TTCTGGCCAACATACAAATA+TGG | - | chr4_4:82735482-82735501 | None:intergenic | 35.0% | |
| ! | TTTTCCTAAAACCCTGATTC+TGG | - | chr4_4:82735499-82735518 | None:intergenic | 35.0% |
| !!! | AGAATCAGGGTTTTAGGAAA+AGG | + | chr4_4:82735498-82735517 | Msa0708930:intron | 35.0% |
| CAAATTATCCTAGAGAATGG+CGG | - | chr4_4:82735613-82735632 | None:intergenic | 35.0% | |
| ATCAACCATTACATACACCA+TGG | - | chr4_4:82735788-82735807 | None:intergenic | 35.0% | |
| TAGGTGTTTGCAATTTATGG+CGG | - | chr4_4:82735821-82735840 | None:intergenic | 35.0% | |
| AGAAACATGGTAGGTTTGAT+AGG | - | chr4_4:82735840-82735859 | None:intergenic | 35.0% | |
| GGAAACTATAGATCTCATAC+TGG | + | chr4_4:82736178-82736197 | Msa0708930:CDS | 35.0% | |
| TCTCAAGCACTTAACAACAA+CGG | - | chr4_4:82736422-82736441 | None:intergenic | 35.0% | |
| AAGAGTTCATTAGTGCGTAA+AGG | - | chr4_4:82736472-82736491 | None:intergenic | 35.0% | |
| TGTTTACAGACACAGTAAGT+TGG | - | chr4_4:82736605-82736624 | None:intergenic | 35.0% | |
| ATGTAGAGGACTAACTAACT+TGG | + | chr4_4:82736645-82736664 | Msa0708930:intron | 35.0% | |
| AAGTTGACAGAACAAAACGA+AGG | - | chr4_4:82736678-82736697 | None:intergenic | 35.0% | |
| TCTAAATACAATGGTTGCGA+TGG | - | chr4_4:82736704-82736723 | None:intergenic | 35.0% | |
| CCAGAAATTTGTAGGTAGAT+TGG | - | chr4_4:82737173-82737192 | None:intergenic | 35.0% | |
| CCAATCTACCTACAAATTTC+TGG | + | chr4_4:82737170-82737189 | Msa0708930:intron | 35.0% | |
| ATAATGATAACTATCTGGCC+TGG | - | chr4_4:82737209-82737228 | None:intergenic | 35.0% | |
| CCCATACAAGATTAACCAAA+TGG | - | chr4_4:82737249-82737268 | None:intergenic | 35.0% | |
| AAGACTCATAACCTGATTCA+TGG | + | chr4_4:82737348-82737367 | Msa0708930:intron | 35.0% | |
| AGACTCATAACCTGATTCAT+GGG | + | chr4_4:82737349-82737368 | Msa0708930:intron | 35.0% | |
| AGCAAGCAATAAACTTGTCA+GGG | + | chr4_4:82737395-82737414 | Msa0708930:intron | 35.0% | |
| TATCCACCAATACTTACGAA+AGG | + | chr4_4:82737491-82737510 | Msa0708930:intron | 35.0% | |
| ATCCACCAATACTTACGAAA+GGG | + | chr4_4:82737492-82737511 | Msa0708930:intron | 35.0% | |
| TAAGACCCTTTCGTAAGTAT+TGG | - | chr4_4:82737500-82737519 | None:intergenic | 35.0% | |
| GTCTTATATATAGGGACAGA+AGG | + | chr4_4:82737514-82737533 | Msa0708930:intron | 35.0% | |
| GTACTCTCTTGAACATTTCT+TGG | - | chr4_4:82737561-82737580 | None:intergenic | 35.0% | |
| AAACTGACGTCAATTGTAGT+TGG | + | chr4_4:82737603-82737622 | Msa0708930:intron | 35.0% | |
| AACTGACGTCAATTGTAGTT+GGG | + | chr4_4:82737604-82737623 | Msa0708930:intron | 35.0% | |
| CATATGAAAATCTCCTGTGA+AGG | - | chr4_4:82737702-82737721 | None:intergenic | 35.0% | |
| !! | TTATATTTTTGCTGGCAGCT+TGG | + | chr4_4:82737884-82737903 | Msa0708930:intron | 35.0% |
| CTGTTTGTATTGTTATCGCT+AGG | - | chr4_4:82737962-82737981 | None:intergenic | 35.0% | |
| !! | GTTTCTAGTTTCTACACGAT+TGG | - | chr4_4:82738620-82738639 | None:intergenic | 35.0% |
| ATGTAGCTGGGTGAATAAAA+AGG | - | chr4_4:82738705-82738724 | None:intergenic | 35.0% | |
| TCATTATGCAGTATGTAGCT+GGG | - | chr4_4:82738717-82738736 | None:intergenic | 35.0% | |
| ATCATTATGCAGTATGTAGC+TGG | - | chr4_4:82738718-82738737 | None:intergenic | 35.0% | |
| ATAGTTATTGATAGGAACCC+GGG | + | chr4_4:82738998-82739017 | Msa0708930:intron | 35.0% | |
| AAACAGAATTGCTTAAAGGG+AGG | + | chr4_4:82739089-82739108 | Msa0708930:intron | 35.0% | |
| AACAGAATTGCTTAAAGGGA+GGG | + | chr4_4:82739090-82739109 | Msa0708930:intron | 35.0% | |
| GGGTTGTTCTAACAATACTT+TGG | - | chr4_4:82739273-82739292 | None:intergenic | 35.0% | |
| ACATAAATTGCCAAAAGGTG+GGG | - | chr4_4:82739359-82739378 | None:intergenic | 35.0% | |
| GACATAAATTGCCAAAAGGT+GGG | - | chr4_4:82739360-82739379 | None:intergenic | 35.0% | |
| AGACATAAATTGCCAAAAGG+TGG | - | chr4_4:82739361-82739380 | None:intergenic | 35.0% | |
| TGCAGACATAAATTGCCAAA+AGG | - | chr4_4:82739364-82739383 | None:intergenic | 35.0% | |
| TGAAATGGCTTCAATCCAAA+AGG | + | chr4_4:82739461-82739480 | Msa0708930:intron | 35.0% | |
| GAAATGGCTTCAATCCAAAA+GGG | + | chr4_4:82739462-82739481 | Msa0708930:intron | 35.0% | |
| ! | CAATCCAAAAGGGATTTTGT+TGG | + | chr4_4:82739472-82739491 | Msa0708930:intron | 35.0% |
| GCATCTCAAATGTCGTAATT+AGG | - | chr4_4:82739532-82739551 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr4_4:82739600-82739619 | None:intergenic | 35.0% | |
| !!! | AACAGATTTTTTAGGTCCTG+AGG | + | chr4_4:82739633-82739652 | Msa0708930:intron | 35.0% |
| !! | CTTCTTTGGAGCAAATGAAA+AGG | - | chr4_4:82739749-82739768 | None:intergenic | 35.0% |
| GATCTCGAAGTATGCAAAAA+TGG | + | chr4_4:82739931-82739950 | Msa0708930:CDS | 35.0% | |
| CTCTCAATAGATAAAGAACC+AGG | - | chr4_4:82740009-82740028 | None:intergenic | 35.0% | |
| ACTCCCGATGACAAATAATA+TGG | - | chr4_4:82740261-82740280 | None:intergenic | 35.0% | |
| TCATGTTATGATGCCTTCAT+CGG | + | chr4_4:82740284-82740303 | Msa0708930:CDS | 35.0% | |
| GCACATATTCATTGGGTAAT+AGG | - | chr4_4:82740427-82740446 | None:intergenic | 35.0% | |
| GGTTGTAAGCACATATTCAT+TGG | - | chr4_4:82740435-82740454 | None:intergenic | 35.0% | |
| ATGAATATGTGCTTACAACC+AGG | + | chr4_4:82740435-82740454 | Msa0708930:CDS | 35.0% | |
| CAGTTTGTCAGTAAGATGAA+TGG | + | chr4_4:82740645-82740664 | Msa0708930:CDS | 35.0% | |
| GGTGTTAATGTGGATCTTAA+TGG | + | chr4_4:82740666-82740685 | Msa0708930:CDS | 35.0% | |
| TCATCATATTCAATGGAAGG+AGG | - | chr4_4:82740696-82740715 | None:intergenic | 35.0% | |
| TTCCATTGAAGAAGGAATAG+AGG | - | chr4_4:82740813-82740832 | None:intergenic | 35.0% | |
| TTTGTATGTTGGCCAGAATC+AGG | + | chr4_4:82735484-82735503 | Msa0708930:intron | 40.0% | |
| TTGTATGTTGGCCAGAATCA+GGG | + | chr4_4:82735485-82735504 | Msa0708930:intron | 40.0% | |
| GCGTCACAACTTAGATATTG+CGG | - | chr4_4:82735531-82735550 | None:intergenic | 40.0% | |
| CACTACAGTCACAAATACCT+CGG | - | chr4_4:82735553-82735572 | None:intergenic | 40.0% | |
| ATTCAACACATGGACCTCAA+AGG | - | chr4_4:82735676-82735695 | None:intergenic | 40.0% | |
| CTCGTCACATATTCAACACA+TGG | - | chr4_4:82735686-82735705 | None:intergenic | 40.0% | |
| TTCCACCATGGTGTATGTAA+TGG | + | chr4_4:82735780-82735799 | Msa0708930:intron | 40.0% | |
| AACCATTACATACACCATGG+TGG | - | chr4_4:82735785-82735804 | None:intergenic | 40.0% | |
| ! | CATCATATAAACAGGCGTTG+CGG | - | chr4_4:82735871-82735890 | None:intergenic | 40.0% |
| ATCTTCATGCCCTTCTTCTT+CGG | - | chr4_4:82736218-82736237 | None:intergenic | 40.0% | |
| TTCTGCGCAATTCTTTGTCT+CGG | - | chr4_4:82736256-82736275 | None:intergenic | 40.0% | |
| GTTGTTAAGTGCTTGAGACT+CGG | + | chr4_4:82736424-82736443 | Msa0708930:CDS | 40.0% | |
| TAAATTTGTGGACGCACATG+TGG | + | chr4_4:82736491-82736510 | Msa0708930:CDS | 40.0% | |
| TGGGGATGACTTAATATGTC+CGG | + | chr4_4:82737265-82737284 | Msa0708930:intron | 40.0% | |
| GTCTTATATTAAGGGACGGA+GGG | - | chr4_4:82737333-82737352 | None:intergenic | 40.0% | |
| ! | AGTCTTATATTAAGGGACGG+AGG | - | chr4_4:82737334-82737353 | None:intergenic | 40.0% |
| CAGCAAGCAATAAACTTGTC+AGG | + | chr4_4:82737394-82737413 | Msa0708930:intron | 40.0% | |
| AAGAGACAATCATCCTTCAC+AGG | + | chr4_4:82737686-82737705 | Msa0708930:intron | 40.0% | |
| AGCAGAATCAAGCTAGACTA+TGG | - | chr4_4:82737782-82737801 | None:intergenic | 40.0% | |
| ! | ACACACACGACACTTTTATC+TGG | + | chr4_4:82737814-82737833 | Msa0708930:intron | 40.0% |
| CGAGTTATCATCAGTGTCAT+CGG | - | chr4_4:82737999-82738018 | None:intergenic | 40.0% | |
| !! | AGAAGCACTATTCAAGAGAC+AGG | + | chr4_4:82738022-82738041 | Msa0708930:CDS | 40.0% |
| ! | AAGTTTGCACTCTGAAAGGT+TGG | - | chr4_4:82738202-82738221 | None:intergenic | 40.0% |
| GTCAAAGTTTGCACTCTGAA+AGG | - | chr4_4:82738206-82738225 | None:intergenic | 40.0% | |
| TTGAAAACCATGAGCAGATC+AGG | + | chr4_4:82738453-82738472 | Msa0708930:intron | 40.0% | |
| TAAACTTCCTGATCTGCTCA+TGG | - | chr4_4:82738463-82738482 | None:intergenic | 40.0% | |
| AAGGGTCACAATAGGAAAGT+GGG | + | chr4_4:82738564-82738583 | Msa0708930:intron | 40.0% | |
| CATTCTGATGCATGATCATC+TGG | - | chr4_4:82738874-82738893 | None:intergenic | 40.0% | |
| TCATTTACTCCATGGACATC+AGG | - | chr4_4:82738901-82738920 | None:intergenic | 40.0% | |
| ! | ATGAAGAAAAGAAGCACACC+TGG | - | chr4_4:82738928-82738947 | None:intergenic | 40.0% |
| TAGTTATTGATAGGAACCCG+GGG | + | chr4_4:82738999-82739018 | Msa0708930:intron | 40.0% | |
| AGTTGTTGGGCTCAAAGTAT+GGG | + | chr4_4:82739034-82739053 | Msa0708930:intron | 40.0% | |
| AATAATCCTCCCCAAGTACT+AGG | - | chr4_4:82739063-82739082 | None:intergenic | 40.0% | |
| ATTGCTTAAAGGGAGGGAAT+TGG | + | chr4_4:82739096-82739115 | Msa0708930:intron | 40.0% | |
| TAGGACAGGTAGCAAAATAG+TGG | + | chr4_4:82739145-82739164 | Msa0708930:intron | 40.0% | |
| AGGACAGGTAGCAAAATAGT+GGG | + | chr4_4:82739146-82739165 | Msa0708930:intron | 40.0% | |
| ! | TAGCAAAATAGTGGGAAGGA+GGG | + | chr4_4:82739154-82739173 | Msa0708930:intron | 40.0% |
| AGTAGTTGGCCATTACTGAT+AGG | - | chr4_4:82739246-82739265 | None:intergenic | 40.0% | |
| ATGTCGTAATTAGGCGACAA+GGG | - | chr4_4:82739523-82739542 | None:intergenic | 40.0% | |
| AATGTCGTAATTAGGCGACA+AGG | - | chr4_4:82739524-82739543 | None:intergenic | 40.0% | |
| ! | ACATTTGAGATGCCTTGTGT+TGG | + | chr4_4:82739539-82739558 | Msa0708930:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr4_4:82739598-82739617 | Msa0708930:intron | 40.0% |
| ATCCTTAGTTCGCTCTTCTT+TGG | - | chr4_4:82739763-82739782 | None:intergenic | 40.0% | |
| AAGAAGAGCGAACTAAGGAT+TGG | + | chr4_4:82739763-82739782 | Msa0708930:CDS | 40.0% | |
| AGAAGAGCGAACTAAGGATT+GGG | + | chr4_4:82739764-82739783 | Msa0708930:CDS | 40.0% | |
| AACTTCCATCCTCACATGTA+AGG | - | chr4_4:82739878-82739897 | None:intergenic | 40.0% | |
| ATGAAGCATGTGCTCAACAA+GGG | + | chr4_4:82739902-82739921 | Msa0708930:CDS | 40.0% | |
| ! | TTCGTAACGGTTTTTCTGTG+AGG | - | chr4_4:82740061-82740080 | None:intergenic | 40.0% |
| CATATCGAGCTCAGAACAAT+AGG | - | chr4_4:82740130-82740149 | None:intergenic | 40.0% | |
| ! | TTGTGATGCAAATTTTGCGC+AGG | - | chr4_4:82740162-82740181 | None:intergenic | 40.0% |
| TGTCTGATGCATCCAAGAAA+TGG | + | chr4_4:82740183-82740202 | Msa0708930:CDS | 40.0% | |
| GTCTGATGCATCCAAGAAAT+GGG | + | chr4_4:82740184-82740203 | Msa0708930:CDS | 40.0% | |
| TCTGATGCATCCAAGAAATG+GGG | + | chr4_4:82740185-82740204 | Msa0708930:CDS | 40.0% | |
| ATGTTAGATCTTTCACGCTC+AGG | - | chr4_4:82740219-82740238 | None:intergenic | 40.0% | |
| CACTACAATCATGTTCCACA+AGG | + | chr4_4:82740369-82740388 | Msa0708930:CDS | 40.0% | |
| TACAATCATGTTCCACAAGG+CGG | + | chr4_4:82740372-82740391 | Msa0708930:CDS | 40.0% | |
| ATTCATTGGGTAATAGGGGT+AGG | - | chr4_4:82740421-82740440 | None:intergenic | 40.0% | |
| !! | GGAAACAACTTGCTGAAAGA+CGG | + | chr4_4:82740607-82740626 | Msa0708930:CDS | 40.0% |
| TCATGTCGTCGAAATGACTA+AGG | + | chr4_4:82740751-82740770 | Msa0708930:exon | 40.0% | |
| CATGTCGTCGAAATGACTAA+GGG | + | chr4_4:82740752-82740771 | Msa0708930:exon | 40.0% | |
| AATAGAGGCAGATCCTTGAT+AGG | - | chr4_4:82740798-82740817 | None:intergenic | 40.0% | |
| TGCCTCTATTCCTTCTTCAA+TGG | + | chr4_4:82740808-82740827 | Msa0708930:three_prime_UTR | 40.0% | |
| AACCCTCATATAGCAAGTGA+TGG | - | chr4_4:82740860-82740879 | None:intergenic | 40.0% | |
| ! | TAATTGATGAGGGTGTACAC+TGG | - | chr4_4:82740889-82740908 | None:intergenic | 40.0% |
| ACACCCTCATCAATTATAGC+TGG | + | chr4_4:82740893-82740912 | Msa0708930:three_prime_UTR | 40.0% | |
| CACCCTCATCAATTATAGCT+GGG | + | chr4_4:82740894-82740913 | Msa0708930:three_prime_UTR | 40.0% | |
| GACCCAGCTATAATTGATGA+GGG | - | chr4_4:82740899-82740918 | None:intergenic | 40.0% | |
| TGACCCAGCTATAATTGATG+AGG | - | chr4_4:82740900-82740919 | None:intergenic | 40.0% | |
| ! | TTGGCCAGAATCAGGGTTTT+AGG | + | chr4_4:82735492-82735511 | Msa0708930:intron | 45.0% |
| ATATCTAAGTTGTGACGCCG+AGG | + | chr4_4:82735533-82735552 | Msa0708930:intron | 45.0% | |
| TAGTGTGATCATCGCGATCA+AGG | + | chr4_4:82735568-82735587 | Msa0708930:intron | 45.0% | |
| ! | ACCTACCATGTTTCTGCCAT+AGG | + | chr4_4:82735845-82735864 | Msa0708930:intron | 45.0% |
| CGCAACGCCTGTTTATATGA+TGG | + | chr4_4:82735869-82735888 | Msa0708930:intron | 45.0% | |
| CACTTTACGTTAAACCCCCT+AGG | - | chr4_4:82736035-82736054 | None:intergenic | 45.0% | |
| CTAGGGGGTTTAACGTAAAG+TGG | + | chr4_4:82736033-82736052 | Msa0708930:intron | 45.0% | |
| GGGGTTTAACGTAAAGTGGT+TGG | + | chr4_4:82736037-82736056 | Msa0708930:intron | 45.0% | |
| TGATGCACTGAATGCAGAGA+AGG | + | chr4_4:82736157-82736176 | Msa0708930:CDS | 45.0% | |
| ! | GATCTCATACTGGCTGAAGT+TGG | + | chr4_4:82736188-82736207 | Msa0708930:CDS | 45.0% |
| TCTGCGCAATTCTTTGTCTC+GGG | - | chr4_4:82736255-82736274 | None:intergenic | 45.0% | |
| AGTGATGTCTGCACAAGATG+AGG | + | chr4_4:82736393-82736412 | Msa0708930:intron | 45.0% | |
| GGGGATGACTTAATATGTCC+GGG | + | chr4_4:82737266-82737285 | Msa0708930:intron | 45.0% | |
| !! | GACCCTTTCGTAAGTATTGG+TGG | - | chr4_4:82737497-82737516 | None:intergenic | 45.0% |
| CAAGCTAGACTATGGTTGAG+AGG | - | chr4_4:82737774-82737793 | None:intergenic | 45.0% | |
| ATCAGTGTCATCGGAGAACA+GGG | - | chr4_4:82737990-82738009 | None:intergenic | 45.0% | |
| ATCAGTCCAACAAGAGCAAG+AGG | + | chr4_4:82738048-82738067 | Msa0708930:CDS | 45.0% | |
| CTATGTGCCCCACAAGTTAT+TGG | + | chr4_4:82738311-82738330 | Msa0708930:intron | 45.0% | |
| AGGGCAACTAATTCAGGAGT+TGG | - | chr4_4:82738408-82738427 | None:intergenic | 45.0% | |
| CAAAGAGGAAGGGTCACAAT+AGG | + | chr4_4:82738556-82738575 | Msa0708930:intron | 45.0% | |
| GAAGGGTCACAATAGGAAAG+TGG | + | chr4_4:82738563-82738582 | Msa0708930:intron | 45.0% | |
| !!! | ATCACCTCTGGTTTTGTGCA+TGG | - | chr4_4:82738597-82738616 | None:intergenic | 45.0% |
| TGCTAATGCTGATGCTGTTG+AGG | + | chr4_4:82738843-82738862 | Msa0708930:CDS | 45.0% | |
| TCTGATGCATGATCATCTGG+AGG | - | chr4_4:82738871-82738890 | None:intergenic | 45.0% | |
| CTGGCTGATCATTTACTCCA+TGG | - | chr4_4:82738909-82738928 | None:intergenic | 45.0% | |
| CATGGAGTAAATGATCAGCC+AGG | + | chr4_4:82738907-82738926 | Msa0708930:CDS | 45.0% | |
| CAGTTGTTGGGCTCAAAGTA+TGG | + | chr4_4:82739033-82739052 | Msa0708930:intron | 45.0% | |
| AGTATGGGAAGCCTAGTACT+TGG | + | chr4_4:82739049-82739068 | Msa0708930:intron | 45.0% | |
| GTATGGGAAGCCTAGTACTT+GGG | + | chr4_4:82739050-82739069 | Msa0708930:intron | 45.0% | |
| TATGGGAAGCCTAGTACTTG+GGG | + | chr4_4:82739051-82739070 | Msa0708930:intron | 45.0% | |
| ! | ATTGGTTGCACTTGCTGAGT+TGG | + | chr4_4:82739114-82739133 | Msa0708930:intron | 45.0% |
| ! | CAGGTAGCAAAATAGTGGGA+AGG | + | chr4_4:82739150-82739169 | Msa0708930:intron | 45.0% |
| ! | GTAGCAAAATAGTGGGAAGG+AGG | + | chr4_4:82739153-82739172 | Msa0708930:intron | 45.0% |
| ! | AGCAAAATAGTGGGAAGGAG+GGG | + | chr4_4:82739155-82739174 | Msa0708930:intron | 45.0% |
| ATAGGCATCCGGATTAAGAG+AGG | - | chr4_4:82739228-82739247 | None:intergenic | 45.0% | |
| ATCCGGATGCCTATCAGTAA+TGG | + | chr4_4:82739234-82739253 | Msa0708930:intron | 45.0% | |
| ! | TCTCATCTTTCCCCACCTTT+TGG | + | chr4_4:82739346-82739365 | Msa0708930:intron | 45.0% |
| CAAGGGGCAGATCACAATAA+AGG | - | chr4_4:82739506-82739525 | None:intergenic | 45.0% | |
| TGTCGTAATTAGGCGACAAG+GGG | - | chr4_4:82739522-82739541 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr4_4:82739591-82739610 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr4_4:82739588-82739607 | Msa0708930:intron | 45.0% |
| CTCCAAAGAAGAGCGAACTA+AGG | + | chr4_4:82739758-82739777 | Msa0708930:CDS | 45.0% | |
| GAAGAGCGAACTAAGGATTG+GGG | + | chr4_4:82739765-82739784 | Msa0708930:CDS | 45.0% | |
| CAGCATGAACAATCCCTTCA+AGG | - | chr4_4:82739846-82739865 | None:intergenic | 45.0% | |
| TTCCATCCTCACATGTAAGG+CGG | - | chr4_4:82739875-82739894 | None:intergenic | 45.0% | |
| CATGAAGCATGTGCTCAACA+AGG | + | chr4_4:82739901-82739920 | Msa0708930:CDS | 45.0% | |
| TGAAGCATGTGCTCAACAAG+GGG | + | chr4_4:82739903-82739922 | Msa0708930:CDS | 45.0% | |
| CAGGTATACTATTGCTGCTG+GGG | - | chr4_4:82739990-82740009 | None:intergenic | 45.0% | |
| CCAGGTATACTATTGCTGCT+GGG | - | chr4_4:82739991-82740010 | None:intergenic | 45.0% | |
| ACCAGGTATACTATTGCTGC+TGG | - | chr4_4:82739992-82740011 | None:intergenic | 45.0% | |
| TTGTACTCCACCTGCATCTT+TGG | + | chr4_4:82740032-82740051 | Msa0708930:CDS | 45.0% | |
| GGACAATGAACCCCATTTCT+TGG | - | chr4_4:82740198-82740217 | None:intergenic | 45.0% | |
| ! | TGATACATTTGCGCCGATGA+AGG | - | chr4_4:82740300-82740319 | None:intergenic | 45.0% |
| ATGTACCAGCATGATTCTGC+AGG | - | chr4_4:82740338-82740357 | None:intergenic | 45.0% | |
| ATAGGGGTAGGACATCATTC+CGG | - | chr4_4:82740409-82740428 | None:intergenic | 45.0% | |
| AGATTCCTTCAGGTCAGTCA+TGG | + | chr4_4:82740460-82740479 | Msa0708930:CDS | 45.0% | |
| TGAAGATGATCAGGGATGCT+TGG | + | chr4_4:82740719-82740738 | Msa0708930:CDS | 45.0% | |
| !! | TGGCCATCACTTGCTATATG+AGG | + | chr4_4:82740854-82740873 | Msa0708930:three_prime_UTR | 45.0% |
| !! | GGCCATCACTTGCTATATGA+GGG | + | chr4_4:82740855-82740874 | Msa0708930:three_prime_UTR | 45.0% |
| ATAGCCAGACGGATCATTTG+AGG | - | chr4_4:82740940-82740959 | None:intergenic | 45.0% | |
| CCAATGATCTCATAGCCAGA+CGG | - | chr4_4:82740951-82740970 | None:intergenic | 45.0% | |
| CTGGCTATGAGATCATTGGA+AGG | + | chr4_4:82740952-82740971 | Msa0708930:three_prime_UTR | 45.0% | |
| CATTGGAAATTGTCGACAGG+AGG | - | chr4_4:82740992-82741011 | None:intergenic | 45.0% | |
| CTGCATTGGAAATTGTCGAC+AGG | - | chr4_4:82740995-82741014 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTGATATAAAATA+TGG | - | chr4_4:82737295-82737314 | None:intergenic | 5.0% |
| TCCTTTGACCGCCATTCTCT+AGG | + | chr4_4:82735602-82735621 | Msa0708930:intron | 50.0% | |
| TCCTAGAGAATGGCGGTCAA+AGG | - | chr4_4:82735606-82735625 | None:intergenic | 50.0% | |
| GCCTATGGCAGAAACATGGT+AGG | - | chr4_4:82735849-82735868 | None:intergenic | 50.0% | |
| !! | AGTTGGCCTTCCGAAGAAGA+AGG | + | chr4_4:82736205-82736224 | Msa0708930:CDS | 50.0% |
| !! | GTTGGCCTTCCGAAGAAGAA+GGG | + | chr4_4:82736206-82736225 | Msa0708930:CDS | 50.0% |
| TCATGCCCTTCTTCTTCGGA+AGG | - | chr4_4:82736214-82736233 | None:intergenic | 50.0% | |
| TAAGTGCTTGAGACTCGGAG+CGG | + | chr4_4:82736429-82736448 | Msa0708930:CDS | 50.0% | |
| TCTGGATTTCTGATTGGGCC+AGG | + | chr4_4:82737188-82737207 | Msa0708930:intron | 50.0% | |
| CATCAGTGTCATCGGAGAAC+AGG | - | chr4_4:82737991-82738010 | None:intergenic | 50.0% | |
| GTGTCCATGCACAAAACCAG+AGG | + | chr4_4:82738590-82738609 | Msa0708930:intron | 50.0% | |
| CTACACGATTGGATCACCTC+TGG | - | chr4_4:82738609-82738628 | None:intergenic | 50.0% | |
| GAATGTCAGCCTGATGTCCA+TGG | + | chr4_4:82738889-82738908 | Msa0708930:CDS | 50.0% | |
| ATTGATAGGAACCCGGGGAA+TGG | + | chr4_4:82739004-82739023 | Msa0708930:intron | 50.0% | |
| TTGATAGGAACCCGGGGAAT+GGG | + | chr4_4:82739005-82739024 | Msa0708930:intron | 50.0% | |
| GAATGGGTGGGTCAGTTGTT+GGG | + | chr4_4:82739021-82739040 | Msa0708930:intron | 50.0% | |
| ! | TTGCACTTGCTGAGTTGGCA+GGG | + | chr4_4:82739119-82739138 | Msa0708930:intron | 50.0% |
| GGCCATTACTGATAGGCATC+CGG | - | chr4_4:82739239-82739258 | None:intergenic | 50.0% | |
| GGGGCAGATCACAATAAAGG+TGG | - | chr4_4:82739503-82739522 | None:intergenic | 50.0% | |
| !! | TGCCTTGTGTTGGCTTTGAG+AGG | + | chr4_4:82739549-82739568 | Msa0708930:intron | 50.0% |
| !! | GCCTTGTGTTGGCTTTGAGA+GGG | + | chr4_4:82739550-82739569 | Msa0708930:intron | 50.0% |
| ACCCTCTCAAAGCCAACACA+AGG | - | chr4_4:82739554-82739573 | None:intergenic | 50.0% | |
| !! | TTGTGTTGGCTTTGAGAGGG+TGG | + | chr4_4:82739553-82739572 | Msa0708930:intron | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr4_4:82739586-82739605 | None:intergenic | 50.0% |
| AGCGAACTAAGGATTGGGGT+TGG | + | chr4_4:82739769-82739788 | Msa0708930:CDS | 50.0% | |
| GCGAACTAAGGATTGGGGTT+GGG | + | chr4_4:82739770-82739789 | Msa0708930:CDS | 50.0% | |
| CGAACTAAGGATTGGGGTTG+GGG | + | chr4_4:82739771-82739790 | Msa0708930:CDS | 50.0% | |
| ACAATGCCGCCTTACATGTG+AGG | + | chr4_4:82739866-82739885 | Msa0708930:CDS | 50.0% | |
| CCCAGCAGCAATAGTATACC+TGG | + | chr4_4:82739988-82740007 | Msa0708930:CDS | 50.0% | |
| TGTGAGGCTTCCAAAGATGC+AGG | - | chr4_4:82740045-82740064 | None:intergenic | 50.0% | |
| GACATCATTCCGGTGGTATG+AGG | - | chr4_4:82740399-82740418 | None:intergenic | 50.0% | |
| CAACCAGGTCAGATTCCTTC+AGG | + | chr4_4:82740450-82740469 | Msa0708930:CDS | 50.0% | |
| TGACCTGAAGGAATCTGACC+TGG | - | chr4_4:82740456-82740475 | None:intergenic | 50.0% | |
| TCGGATGAACTTCCGAAGGA+TGG | - | chr4_4:82740486-82740505 | None:intergenic | 50.0% | |
| TGCTTCGGATGAACTTCCGA+AGG | - | chr4_4:82740490-82740509 | None:intergenic | 50.0% | |
| GCTTCCTCAAATGATCCGTC+TGG | + | chr4_4:82740933-82740952 | Msa0708930:three_prime_UTR | 50.0% | |
| CCGTCTGGCTATGAGATCAT+TGG | + | chr4_4:82740948-82740967 | Msa0708930:three_prime_UTR | 50.0% | |
| ! | TGTCGACAGGAGGTATACAG+AGG | - | chr4_4:82740982-82741001 | None:intergenic | 50.0% |
| TGCGGCCTATGGCAGAAACA+TGG | - | chr4_4:82735853-82735872 | None:intergenic | 55.0% | |
| ! | TAAACAGGCGTTGCGGCCTA+TGG | - | chr4_4:82735864-82735883 | None:intergenic | 55.0% |
| TGTGGACGCACATGTGGAGA+AGG | + | chr4_4:82736497-82736516 | Msa0708930:CDS | 55.0% | |
| AGTGTCATCGGAGAACAGGG+TGG | - | chr4_4:82737987-82738006 | None:intergenic | 55.0% | |
| CGCTCACCTCTTGCTCTTGT+TGG | - | chr4_4:82738057-82738076 | None:intergenic | 55.0% | |
| GGAATGGGTGGGTCAGTTGT+TGG | + | chr4_4:82739020-82739039 | Msa0708930:intron | 55.0% | |
| ! | GTTGCACTTGCTGAGTTGGC+AGG | + | chr4_4:82739118-82739137 | Msa0708930:intron | 55.0% |
| ! | TGCTGAGTTGGCAGGGTGTT+AGG | + | chr4_4:82739126-82739145 | Msa0708930:intron | 55.0% |
| ! | AGTTGGCAGGGTGTTAGGAC+AGG | + | chr4_4:82739131-82739150 | Msa0708930:intron | 55.0% |
| !! | TGTTGGCTTTGAGAGGGTGG+AGG | + | chr4_4:82739556-82739575 | Msa0708930:intron | 55.0% |
| GCACTCCTCACCTTACAAGC+CGG | + | chr4_4:82739578-82739597 | Msa0708930:intron | 55.0% | |
| TGCCGCCTTACATGTGAGGA+TGG | + | chr4_4:82739870-82739889 | Msa0708930:CDS | 55.0% | |
| GAGGCTTCCAAAGATGCAGG+TGG | - | chr4_4:82740042-82740061 | None:intergenic | 55.0% | |
| CAGCATGATTCTGCAGGTCG+TGG | - | chr4_4:82740332-82740351 | None:intergenic | 55.0% | |
| CACGACCTGCAGAATCATGC+TGG | + | chr4_4:82740330-82740349 | Msa0708930:CDS | 55.0% | |
| GATGGCCATGACTGACCTGA+AGG | - | chr4_4:82740468-82740487 | None:intergenic | 55.0% | |
| GGTCAGTCATGGCCATCCTT+CGG | + | chr4_4:82740471-82740490 | Msa0708930:CDS | 55.0% | |
| TGAAAGACGGCCTCGTGTGA+GGG | + | chr4_4:82740620-82740639 | Msa0708930:CDS | 55.0% | |
| ACAAACTGTCCCCTCACACG+AGG | - | chr4_4:82740633-82740652 | None:intergenic | 55.0% | |
| GGACGCACATGTGGAGAAGG+AGG | + | chr4_4:82736500-82736519 | Msa0708930:CDS | 60.0% | |
| ! | CATGTGGAGAAGGAGGCGCA+TGG | + | chr4_4:82736507-82736526 | Msa0708930:CDS | 60.0% |
| ATAGGAACCCGGGGAATGGG+TGG | + | chr4_4:82739008-82739027 | Msa0708930:intron | 60.0% | |
| TAGGAACCCGGGGAATGGGT+GGG | + | chr4_4:82739009-82739028 | Msa0708930:intron | 60.0% | |
| AACTGACCCACCCATTCCCC+GGG | - | chr4_4:82739018-82739037 | None:intergenic | 60.0% | |
| CAACTGACCCACCCATTCCC+CGG | - | chr4_4:82739019-82739038 | None:intergenic | 60.0% | |
| GGGAAGCCTAGTACTTGGGG+AGG | + | chr4_4:82739054-82739073 | Msa0708930:intron | 60.0% | |
| GTGGTATGAGGACCGCCTTG+TGG | - | chr4_4:82740387-82740406 | None:intergenic | 60.0% | |
| CAAGGCGGTCCTCATACCAC+CGG | + | chr4_4:82740387-82740406 | Msa0708930:CDS | 60.0% | |
| GGGGTAGGACATCATTCCGG+TGG | - | chr4_4:82740406-82740425 | None:intergenic | 60.0% | |
| CTGAAAGACGGCCTCGTGTG+AGG | + | chr4_4:82740619-82740638 | Msa0708930:CDS | 60.0% | |
| GAAAGACGGCCTCGTGTGAG+GGG | + | chr4_4:82740621-82740640 | Msa0708930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 82735118 | 82741102 | 82735118 | ID=Msa0708930;Name=Msa0708930 |
| chr4_4 | mRNA | 82735118 | 82741102 | 82735118 | ID=Msa0708930-mRNA-1;Parent=Msa0708930;Name=Msa0708930-mRNA-1;_AED=0.27;_eAED=0.27;_QI=42|1|1|1|1|1|6|335|576 |
| chr4_4 | exon | 82735118 | 82735307 | 82735118 | ID=Msa0708930-mRNA-1:exon:27252;Parent=Msa0708930-mRNA-1 |
| chr4_4 | exon | 82736126 | 82736287 | 82736126 | ID=Msa0708930-mRNA-1:exon:27253;Parent=Msa0708930-mRNA-1 |
| chr4_4 | exon | 82736395 | 82736528 | 82736395 | ID=Msa0708930-mRNA-1:exon:27254;Parent=Msa0708930-mRNA-1 |
| chr4_4 | exon | 82737902 | 82738069 | 82737902 | ID=Msa0708930-mRNA-1:exon:27255;Parent=Msa0708930-mRNA-1 |
| chr4_4 | exon | 82738835 | 82738928 | 82738835 | ID=Msa0708930-mRNA-1:exon:27256;Parent=Msa0708930-mRNA-1 |
| chr4_4 | exon | 82739743 | 82741102 | 82739743 | ID=Msa0708930-mRNA-1:exon:27257;Parent=Msa0708930-mRNA-1 |
| chr4_4 | five_prime_UTR | 82735118 | 82735159 | 82735118 | ID=Msa0708930-mRNA-1:five_prime_utr;Parent=Msa0708930-mRNA-1 |
| chr4_4 | CDS | 82735160 | 82735307 | 82735160 | ID=Msa0708930-mRNA-1:cds;Parent=Msa0708930-mRNA-1 |
| chr4_4 | CDS | 82736126 | 82736287 | 82736126 | ID=Msa0708930-mRNA-1:cds;Parent=Msa0708930-mRNA-1 |
| chr4_4 | CDS | 82736395 | 82736528 | 82736395 | ID=Msa0708930-mRNA-1:cds;Parent=Msa0708930-mRNA-1 |
| chr4_4 | CDS | 82737902 | 82738069 | 82737902 | ID=Msa0708930-mRNA-1:cds;Parent=Msa0708930-mRNA-1 |
| chr4_4 | CDS | 82738835 | 82738928 | 82738835 | ID=Msa0708930-mRNA-1:cds;Parent=Msa0708930-mRNA-1 |
| chr4_4 | CDS | 82739743 | 82740767 | 82739743 | ID=Msa0708930-mRNA-1:cds;Parent=Msa0708930-mRNA-1 |
| chr4_4 | three_prime_UTR | 82740768 | 82741102 | 82740768 | ID=Msa0708930-mRNA-1:three_prime_utr;Parent=Msa0708930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
