AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389500 MtrunA17_Chr5g0437601 99.297 427 3 0 1 427 1 427 0.0 890
Msa0389500 MtrunA17_Chr3g0114101 74.596 433 101 5 4 427 1 433 0.0 660
Msa0389500 MtrunA17_Chr4g0005491 51.003 349 165 3 83 426 62 409 2.44e-132 387
Msa0389500 MtrunA17_Chr7g0243301 48.677 378 183 5 53 425 39 410 4.74e-132 386
Msa0389500 MtrunA17_Chr4g0005481 52.187 343 161 2 79 421 104 443 3.05e-129 380
Msa0389500 MtrunA17_Chr4g0006991 48.986 345 174 2 81 424 84 427 9.86e-129 378
Msa0389500 MtrunA17_Chr8g0360521 49.025 359 175 4 71 425 56 410 5.42e-128 376
Msa0389500 MtrunA17_Chr3g0113671 51.289 349 164 4 80 424 103 449 1.25e-126 374
Msa0389500 MtrunA17_Chr5g0437291 48.571 350 175 3 81 425 163 512 9.06e-119 356
Msa0389500 MtrunA17_Chr7g0242701 41.647 425 238 4 10 424 3 427 1.09e-118 352
Msa0389500 MtrunA17_Chr5g0430371 36.675 379 207 9 64 426 40 401 1.24e-76 244
Msa0389500 MtrunA17_Chr3g0105301 36.944 360 201 8 76 426 36 378 1.57e-76 243
Msa0389500 MtrunA17_Chr5g0413271 36.932 352 206 8 77 425 139 477 2.08e-75 243
Msa0389500 MtrunA17_Chr4g0041011 34.097 393 226 9 32 424 4 363 3.49e-75 239
Msa0389500 MtrunA17_Chr1g0210771 38.329 347 186 10 83 424 59 382 1.11e-74 238
Msa0389500 MtrunA17_Chr2g0325481 37.026 343 191 7 83 425 50 367 2.62e-74 236
Msa0389500 MtrunA17_Chr1g0175671 36.723 354 200 8 83 425 170 510 1.90e-73 239
Msa0389500 MtrunA17_Chr3g0097891 35.127 353 203 8 75 425 23 351 1.39e-72 231
Msa0389500 MtrunA17_Chr7g0258851 37.255 357 194 9 83 425 248 588 1.79e-72 238
Msa0389500 MtrunA17_Chr1g0171171 33.668 398 234 10 27 424 8 375 6.79e-72 231
Msa0389500 MtrunA17_Chr7g0259711 33.034 445 258 15 2 425 8 433 1.59e-71 232
Msa0389500 MtrunA17_Chr4g0071391 37.143 350 200 8 83 424 109 446 2.05e-71 232
Msa0389500 MtrunA17_Chr2g0287901 37.183 355 196 11 81 422 95 435 5.72e-70 228
Msa0389500 MtrunA17_Chr2g0314801 36.286 350 192 8 77 421 27 350 9.66e-69 222
Msa0389500 MtrunA17_Chr2g0283581 34.925 398 211 11 27 424 9 358 2.57e-68 221
Msa0389500 MtrunA17_Chr7g0269991 36.648 352 192 9 83 424 137 467 5.71e-68 223
Msa0389500 MtrunA17_Chr3g0085081 35.817 349 190 10 81 424 29 348 1.29e-67 219
Msa0389500 MtrunA17_Chr5g0413851 37.644 348 189 10 79 424 38 359 1.54e-67 219
Msa0389500 MtrunA17_Chr4g0045941 33.903 351 208 8 75 425 25 351 1.55e-66 216
Msa0389500 MtrunA17_Chr3g0085071 35.817 349 190 10 81 424 44 363 2.31e-66 216
Msa0389500 MtrunA17_Chr1g0213281 33.943 383 231 10 56 426 145 517 2.39e-66 220
Msa0389500 MtrunA17_Chr4g0068111 33.711 353 212 7 83 425 114 454 7.10e-66 218
Msa0389500 MtrunA17_Chr3g0091031 35.244 349 192 10 81 424 29 348 2.71e-65 213
Msa0389500 MtrunA17_Chr8g0368461 33.333 372 213 10 76 425 171 529 3.28e-63 213
Msa0389500 MtrunA17_Chr4g0045951 33.333 348 208 8 78 425 40 363 1.50e-61 203
Msa0389500 MtrunA17_Chr2g0314791 35.393 356 185 13 80 425 26 346 2.01e-60 200
Msa0389500 MtrunA17_Chr8g0384151 28.440 436 260 13 5 425 19 417 6.83e-55 188
Msa0389500 MtrunA17_Chr3g0126021 29.609 358 219 8 79 425 125 460 2.06e-52 182
Msa0389500 MtrunA17_Chr6g0456681 30.833 360 220 10 81 424 62 408 3.83e-43 156
Msa0389500 MtrunA17_Chr1g0209921 34.043 235 143 6 81 313 42 266 3.91e-42 149
Msa0389500 MtrunA17_Chr1g0188191 27.889 398 254 16 43 421 195 578 4.66e-40 150
Msa0389500 MtrunA17_Chr1g0178081 29.261 352 180 9 81 425 53 342 5.44e-40 146
Msa0389500 MtrunA17_Chr6g0456691 27.419 434 262 16 16 424 14 419 3.69e-39 145
Msa0389500 MtrunA17_Chr8g0347321 28.571 357 228 12 83 424 95 439 6.88e-39 145
Msa0389500 MtrunA17_Chr8g0384421 30.028 363 214 13 81 424 131 472 2.46e-37 141
Msa0389500 MtrunA17_Chr6g0476041 28.011 357 231 14 81 421 165 511 3.29e-37 142
Msa0389500 MtrunA17_Chr8g0391481 29.428 367 219 15 80 424 24 372 2.38e-36 137
Msa0389500 MtrunA17_Chr6g0451321 28.032 371 229 14 73 424 106 457 5.76e-36 137
Msa0389500 MtrunA17_Chr5g0414061 27.887 355 227 12 83 421 94 435 4.22e-35 135
Msa0389500 MtrunA17_Chr5g0414091 28.453 362 222 12 80 420 82 427 8.64e-35 134
Msa0389500 MtrunA17_Chr2g0283851 27.559 381 230 15 65 420 37 396 8.87e-35 133
Msa0389500 MtrunA17_Chr5g0414051 25.886 367 226 13 80 421 72 417 4.38e-33 129
Msa0389500 MtrunA17_Chr3g0140371 28.333 360 223 13 80 421 15 357 9.76e-33 127
Msa0389500 MtrunA17_Chr7g0226991 27.348 362 227 14 80 421 54 399 1.43e-32 127
Msa0389500 MtrunA17_Chr8g0387921 26.479 355 231 12 83 420 74 415 2.71e-32 127
Msa0389500 MtrunA17_Chr5g0414041 28.571 357 224 12 83 421 87 430 1.44e-31 125
Msa0389500 MtrunA17_Chr4g0049421 26.997 363 218 16 83 420 48 388 1.69e-29 118
Msa0389500 MtrunA17_Chr6g0455901 26.503 366 231 12 80 424 68 416 9.03e-29 117
Msa0389500 MtrunA17_Chr4g0070341 27.704 379 202 16 81 424 130 471 2.22e-27 113
Msa0389500 MtrunA17_Chr7g0221271 40.000 130 77 1 81 210 77 205 4.19e-26 104
Msa0389500 MtrunA17_Chr7g0221291 45.361 97 52 1 79 175 75 170 1.71e-24 99.4
Msa0389500 MtrunA17_Chr2g0287931 36.134 119 66 4 143 252 1 118 1.77e-15 72.8
Msa0389500 MtrunA17_Chr3g0085101 38.318 107 62 3 280 385 5 108 6.20e-13 65.5
Msa0389500 MtrunA17_Chr7g0221281 25.311 241 155 10 197 424 8 236 7.06e-12 65.5
Msa0389500 MtrunA17_Chr2g0287911 43.750 64 28 2 76 139 54 109 1.23e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389500 AT2G40320.1 78.537 410 86 1 17 426 17 424 0.0 689
Msa0389500 AT3G11030.1 62.723 448 137 4 8 427 6 451 0.0 588
Msa0389500 AT5G01620.2 50.000 350 171 2 73 421 100 446 4.44e-129 380
Msa0389500 AT5G01620.1 50.000 350 171 2 73 421 100 446 4.44e-129 380
Msa0389500 AT5G01620.3 50.000 350 171 2 73 421 108 454 1.00e-128 379
Msa0389500 AT3G55990.1 53.009 349 158 3 81 425 138 484 4.94e-128 379
Msa0389500 AT1G73140.1 44.444 378 193 3 49 425 45 406 7.02e-127 373
Msa0389500 AT5G01360.2 48.696 345 176 1 81 424 34 378 1.68e-126 371
Msa0389500 AT2G40150.1 51.233 365 163 4 73 424 58 420 5.92e-126 371
Msa0389500 AT5G01360.1 48.696 345 176 1 81 424 90 434 6.81e-126 371
Msa0389500 AT2G38320.1 44.865 370 198 3 61 425 37 405 8.04e-117 347
Msa0389500 AT2G40160.1 40.821 414 229 7 23 426 18 425 1.70e-107 324
Msa0389500 AT2G40160.2 41.176 408 224 7 23 420 18 419 4.32e-107 323
Msa0389500 AT2G38320.2 47.188 320 163 3 111 425 4 322 1.18e-105 316
Msa0389500 AT3G12060.1 38.259 379 204 9 61 425 174 536 3.80e-82 263
Msa0389500 AT5G06700.1 38.547 358 192 10 81 425 253 595 1.11e-78 255
Msa0389500 AT3G62390.1 37.166 374 203 11 68 426 117 473 1.97e-75 243
Msa0389500 AT1G78710.1 35.429 350 199 8 78 425 33 357 3.19e-75 239
Msa0389500 AT5G20590.1 36.639 363 209 8 72 425 130 480 3.68e-74 240
Msa0389500 AT2G40160.3 39.799 299 166 5 23 313 18 310 3.78e-74 234
Msa0389500 AT5G19160.1 34.651 430 237 14 20 422 30 442 5.21e-74 239
Msa0389500 AT3G14850.2 37.249 349 188 7 78 421 29 351 9.90e-73 233
Msa0389500 AT2G30900.1 35.135 370 204 12 68 426 23 367 4.13e-72 231
Msa0389500 AT3G06080.2 32.118 439 247 12 15 422 25 443 1.82e-70 230
Msa0389500 AT5G58600.1 35.411 353 203 7 83 426 66 402 2.22e-70 228
Msa0389500 AT5G49340.1 35.230 369 219 9 68 425 83 442 2.39e-70 229
Msa0389500 AT1G29050.1 34.582 347 203 6 78 424 56 378 4.46e-70 226
Msa0389500 AT2G30010.1 35.309 388 214 10 54 426 33 398 5.49e-70 227
Msa0389500 AT2G42570.1 34.140 372 217 9 54 425 22 365 1.17e-69 225
Msa0389500 AT2G30010.2 35.309 388 214 10 54 426 76 441 1.61e-69 227
Msa0389500 AT2G34070.1 34.473 351 199 8 78 424 60 383 2.36e-69 224
Msa0389500 AT2G31110.2 36.047 344 192 9 83 424 45 362 7.11e-69 223
Msa0389500 AT1G60790.1 34.551 356 212 9 81 425 188 533 2.02e-68 226
Msa0389500 AT3G54260.1 36.578 339 195 8 83 420 51 370 8.23e-67 218
Msa0389500 AT5G06230.2 34.426 366 196 11 83 425 21 365 3.10e-61 203
Msa0389500 AT5G06230.1 34.426 366 196 11 83 425 62 406 1.14e-60 203
Msa0389500 AT1G48880.1 30.095 422 232 14 23 425 63 440 4.01e-57 194
Msa0389500 AT1G78710.2 30.747 348 165 8 78 425 26 297 2.00e-55 186
Msa0389500 AT5G19160.2 34.505 313 186 8 20 317 30 338 1.45e-54 185
Msa0389500 AT3G11570.1 33.828 337 198 7 100 425 98 420 2.34e-54 186
Msa0389500 AT3G62390.2 38.113 265 143 8 68 317 117 375 9.30e-52 179
Msa0389500 AT3G06080.1 35.743 249 146 5 76 313 93 338 6.06e-50 172
Msa0389500 AT5G20590.2 37.450 251 144 5 72 313 130 376 1.88e-49 172
Msa0389500 AT2G30900.2 35.271 258 145 8 68 315 23 268 8.85e-47 162
Msa0389500 AT2G31110.3 35.088 228 135 5 83 308 45 261 1.98e-44 156
Msa0389500 AT1G70230.1 29.609 358 221 11 78 424 74 411 2.07e-43 157
Msa0389500 AT5G58600.2 33.473 239 140 5 83 315 66 291 1.16e-42 152
Msa0389500 AT2G34070.2 32.364 275 156 7 154 424 1 249 2.64e-42 150
Msa0389500 AT3G14850.1 34.066 273 150 6 154 421 1 248 4.96e-42 149
Msa0389500 AT3G28150.1 28.000 425 245 16 18 422 25 408 1.89e-41 152
Msa0389500 AT5G06230.3 34.524 252 134 7 83 313 62 303 9.25e-41 147
Msa0389500 AT5G15900.1 29.082 392 247 12 50 424 32 409 4.75e-40 148
Msa0389500 AT5G15900.2 29.082 392 247 12 50 424 51 428 5.81e-40 148
Msa0389500 AT5G15890.1 28.652 356 220 10 80 421 184 519 3.14e-38 145
Msa0389500 AT5G64020.1 29.301 372 213 16 83 424 57 408 1.11e-37 141
Msa0389500 AT5G64470.3 29.915 351 218 13 83 420 55 390 3.09e-37 140
Msa0389500 AT3G02440.1 26.966 356 232 11 83 424 127 468 7.38e-37 140
Msa0389500 AT3G02440.2 26.966 356 232 11 83 424 135 476 1.03e-36 140
Msa0389500 AT5G64470.2 29.494 356 219 12 83 420 55 396 2.05e-36 138
Msa0389500 AT1G01430.1 29.661 354 224 12 83 420 99 443 1.81e-35 136
Msa0389500 AT4G25360.1 26.344 372 230 13 76 421 168 521 2.09e-35 137
Msa0389500 AT4G25360.2 26.344 372 230 13 76 421 168 521 2.09e-35 137
Msa0389500 AT4G23790.1 25.059 427 276 17 21 424 22 427 8.86e-35 134
Msa0389500 AT5G51640.1 27.174 368 225 15 80 421 135 485 4.38e-34 133
Msa0389500 AT2G37720.1 28.571 385 218 17 66 424 129 482 5.56e-34 132
Msa0389500 AT4G01080.1 29.429 350 221 14 83 420 91 426 1.05e-33 131
Msa0389500 AT2G14530.1 26.519 362 229 10 83 424 62 406 1.17e-33 130
Msa0389500 AT2G31110.1 33.621 232 127 8 195 424 8 214 6.24e-31 118
Msa0389500 AT5G20680.6 26.178 382 208 16 79 424 114 457 1.06e-29 120
Msa0389500 AT5G20680.2 26.178 382 208 16 79 424 190 533 1.77e-29 120
Msa0389500 AT5G20680.4 26.178 382 208 16 79 424 208 551 1.82e-29 120
Msa0389500 AT5G20680.1 26.178 382 208 16 79 424 208 551 1.82e-29 120
Msa0389500 AT5G20680.3 26.178 382 208 16 79 424 208 551 1.82e-29 120
Msa0389500 AT5G20680.5 26.178 382 208 16 79 424 208 551 1.82e-29 120
Msa0389500 AT4G11090.1 23.040 421 288 15 23 421 16 422 7.15e-27 112
Msa0389500 AT5G64470.1 27.985 268 178 9 83 340 55 317 3.72e-23 99.8
Msa0389500 AT5G64470.4 27.715 267 178 9 83 339 55 316 1.27e-22 98.2

Find 135 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATGGAGTTCCCTCTTT+TGG 0.157557 3_1:+94360724 None:intergenic
TACCTGGTCTTCAAGATAAT+TGG 0.191574 3_1:-94357821 Msa0389500:CDS
TTGGAAAGGTGTTGACATTT+TGG 0.194283 3_1:-94358930 Msa0389500:CDS
GCTAATTGCTCTTTAGTTAA+AGG 0.201296 3_1:+94357882 None:intergenic
ACTCCATTGTGATGTCTTAT+TGG 0.212538 3_1:-94360712 Msa0389500:five_prime_UTR
ACACATTTGTTCAAATATAA+AGG 0.225938 3_1:-94357755 Msa0389500:three_prime_UTR
TGATTAATAATTCCACATAC+TGG 0.251655 3_1:-94358049 Msa0389500:CDS
TGTCGGGTCTCCCATGTTCT+TGG 0.253030 3_1:+94359921 None:intergenic
ATGCAACAATTGAGTTCTAT+TGG 0.254941 3_1:-94359051 Msa0389500:CDS
GAATTTGGTATTTCAGTTAT+AGG 0.257936 3_1:+94357507 None:intergenic
TCAATAAGCATGGTAGAAAT+TGG 0.262180 3_1:-94358949 Msa0389500:CDS
ATTGAATGTACTAGTATATT+AGG 0.272300 3_1:+94360612 None:intergenic
TTGAAGTGTGTGCATCTTTA+CGG 0.287806 3_1:+94357925 None:intergenic
TGAATTATCTATATATTGTT+AGG 0.290624 3_1:-94357424 Msa0389500:three_prime_UTR
ATCAAAGGTTTCCATGGATT+TGG 0.299044 3_1:+94359591 None:intergenic
ATCATATATTGTTGTTCTCT+TGG 0.308084 3_1:-94357731 Msa0389500:three_prime_UTR
CTAATTGCTCTTTAGTTAAA+GGG 0.317364 3_1:+94357883 None:intergenic
GAAGATTTCATGTGCATCTT+TGG 0.320970 3_1:-94360370 Msa0389500:CDS
TATTCAATGGAAGGTGGGTT+TGG 0.326490 3_1:-94360009 Msa0389500:CDS
TGAACTTATGTCTTTGTTGA+TGG 0.335672 3_1:+94360660 None:intergenic
CTCCATTGTGATGTCTTATT+GGG 0.337032 3_1:-94360711 Msa0389500:five_prime_UTR
GTGATGTTAAGAAATGTAAT+TGG 0.337450 3_1:+94357963 None:intergenic
TGGTATTCAACACTTATCTT+TGG 0.343420 3_1:-94358910 Msa0389500:CDS
TCTCTTGGATCATGGACTCT+TGG 0.348285 3_1:-94357716 Msa0389500:three_prime_UTR
ACACAATCAGCATAGCTTAC+AGG 0.357812 3_1:+94357855 None:intergenic
CACATTTGTTCAAATATAAA+GGG 0.368100 3_1:-94357754 Msa0389500:three_prime_UTR
ATTCAATGGAAGGTGGGTTT+GGG 0.383497 3_1:-94360008 Msa0389500:CDS
CGGACAATGCTGTTGTTCAT+AGG 0.387335 3_1:-94359003 Msa0389500:CDS
CTCTTGGATCATGGACTCTT+GGG 0.388166 3_1:-94357715 Msa0389500:three_prime_UTR
ATTGTTGTTCTCTTGGATCA+TGG 0.391390 3_1:-94357724 Msa0389500:three_prime_UTR
ACGACCTTTGCTTCTTAGAA+TGG 0.393423 3_1:+94360453 None:intergenic
CCAATGTTGGTAATCTTTGT+CGG 0.403476 3_1:+94359904 None:intergenic
CTATGAAAAGTATGCTTAGA+TGG 0.410597 3_1:-94358675 Msa0389500:CDS
TCTGTCTTCCCCACCGCAAA+TGG 0.411531 3_1:+94360046 None:intergenic
TGCAACAATTGAGTTCTATT+GGG 0.419007 3_1:-94359050 Msa0389500:CDS
GGTATTTCAGTTATAGGAAA+GGG 0.419698 3_1:+94357513 None:intergenic
TATTCAACACTTATCTTTGG+TGG 0.424745 3_1:-94358907 Msa0389500:CDS
TCCATGGATTTGGCATCCTC+AGG 0.427436 3_1:+94359601 None:intergenic
AAATTAGTTATACGTATATG+AGG 0.427945 3_1:-94360761 Msa0389500:five_prime_UTR
ACTAGTATATTAGGAGAAAG+TGG 0.429923 3_1:+94360621 None:intergenic
ACTTATCTTTGGTGGATGAC+TGG 0.435500 3_1:-94358899 Msa0389500:CDS
ATATGGCAGGAGTATAGATT+GGG 0.440954 3_1:-94358111 Msa0389500:intron
TATATGGCAGGAGTATAGAT+TGG 0.441176 3_1:-94358112 Msa0389500:intron
TAAATAATAGTGAGTTGAGT+TGG 0.441530 3_1:-94360523 Msa0389500:five_prime_UTR
ATAGATTGGGGAGGTGAGCC+AGG 0.443479 3_1:-94358098 Msa0389500:CDS
GTTAGTAGTTGTTCAAAGAA+AGG 0.448939 3_1:-94357574 Msa0389500:three_prime_UTR
ATAGTGAGTTGAGTTGGATT+TGG 0.450733 3_1:-94360517 Msa0389500:five_prime_UTR
CATCCTCAGGAATGAGTTGA+TGG 0.450737 3_1:+94359614 None:intergenic
CAATGTTGGTAATCTTTGTC+GGG 0.457780 3_1:+94359905 None:intergenic
CACTCCGATTCCTCGTACAA+TGG 0.458569 3_1:+94359971 None:intergenic
GCTAGAAGGGTGAAAAGGTA+AGG 0.463485 3_1:+94360424 None:intergenic
TGAAAGCTAGAAGGGTGAAA+AGG 0.463624 3_1:+94360419 None:intergenic
ACGACCATTGTACGAGGAAT+CGG 0.464432 3_1:-94359975 Msa0389500:CDS
GATTAATAATTCCACATACT+GGG 0.472858 3_1:-94358048 Msa0389500:CDS
TGTGTACATTGGTGTTTACC+TGG 0.477328 3_1:-94357837 Msa0389500:CDS
TGGAAGGTGGGTTTGGGACG+AGG 0.477341 3_1:-94360002 Msa0389500:CDS
CACAATCAGCATAGCTTACA+GGG 0.477761 3_1:+94357856 None:intergenic
AAAAGTATAATGCAAGTGAT+TGG 0.480921 3_1:-94358011 Msa0389500:CDS
TCTGATAGAATTGTAAGAAA+AGG 0.484458 3_1:-94358977 Msa0389500:CDS
TGATTAATCTTTGTTTGCAA+AGG 0.491547 3_1:-94357650 Msa0389500:three_prime_UTR
TAGTGAATCAAAGGTTTCCA+TGG 0.492850 3_1:+94359585 None:intergenic
GGAAAGAGGATGATGTTTGT+TGG 0.493089 3_1:-94359682 Msa0389500:CDS
GCAGATCAAGGTGCCATTTG+CGG 0.494304 3_1:-94360059 Msa0389500:CDS
GAAGGGTGTGATATATTCAA+TGG 0.494550 3_1:-94360022 Msa0389500:CDS
GTGATATATTCAATGGAAGG+TGG 0.495098 3_1:-94360015 Msa0389500:CDS
TCTTTGGTGGATGACTGGCT+TGG 0.496770 3_1:-94358894 Msa0389500:CDS
TTGTGATGTCTTATTGGGTA+AGG 0.497193 3_1:-94360706 Msa0389500:five_prime_UTR
TCATTGTAACAACTTCCTCC+TGG 0.501058 3_1:+94358080 None:intergenic
GAGTTTGATTCTAGAAGAAA+AGG 0.501756 3_1:+94359025 None:intergenic
TGTTCTTGGCAAGTCAATTG+AGG 0.502642 3_1:+94359935 None:intergenic
AACTGAGGATGCTTATCGTA+TGG 0.502726 3_1:-94358698 Msa0389500:CDS
CTAGTATATTAGGAGAAAGT+GGG 0.504465 3_1:+94360622 None:intergenic
CAATTGACTTGCCAAGAACA+TGG 0.509598 3_1:-94359932 Msa0389500:CDS
GTCAATTGAGGTTGTATGTA+CGG 0.512274 3_1:+94359947 None:intergenic
GACAAATTCTTCTCCACACC+TGG 0.515054 3_1:-94360319 Msa0389500:intron
ACTAGCATGTCACCTTCTCA+TGG 0.524451 3_1:-94358610 Msa0389500:CDS
ACCACTTAAGTGCCCAAAAG+AGG 0.525177 3_1:-94360737 Msa0389500:five_prime_UTR
TTCCAATTATCTTGAAGACC+AGG 0.528264 3_1:+94357819 None:intergenic
GAAAACAGTTAGTGAATCAA+AGG 0.528871 3_1:+94359576 None:intergenic
TGATATATTCAATGGAAGGT+GGG 0.529302 3_1:-94360014 Msa0389500:CDS
CTAGAAGGGTGAAAAGGTAA+GGG 0.530481 3_1:+94360425 None:intergenic
AGAATGGAAGAAGGTGAGAA+TGG 0.531203 3_1:+94360469 None:intergenic
GCGGTGGGGAAGACAGAGGA+AGG 0.532473 3_1:-94360040 Msa0389500:CDS
ACAATCAGAACCCCAGTATG+TGG 0.541987 3_1:+94358037 None:intergenic
TTGCTTCTTAGAATGGAAGA+AGG 0.542128 3_1:+94360460 None:intergenic
CTTCAATCTATAAGAAGCAA+TGG 0.542329 3_1:-94357908 Msa0389500:CDS
TGGTATTTCAGTTATAGGAA+AGG 0.542790 3_1:+94357512 None:intergenic
TCCTGAGGATGCCAAATCCA+TGG 0.545590 3_1:-94359602 Msa0389500:CDS
GTACTTTACTCTAAAAGACT+TGG 0.546625 3_1:+94360568 None:intergenic
GAGGGTGAAGAAGCAGATCA+AGG 0.550519 3_1:-94360071 Msa0389500:CDS
TATACTCACTTTCCATGAGA+AGG 0.556322 3_1:+94358598 None:intergenic
ATCAAGGTGCCATTTGCGGT+GGG 0.557278 3_1:-94360055 Msa0389500:CDS
GGTGTGATATATTCAATGGA+AGG 0.558509 3_1:-94360018 Msa0389500:CDS
AAGGAAGAAAGAAATGAATG+AGG 0.563328 3_1:-94357610 Msa0389500:three_prime_UTR
TAGAAGGGTGAAAAGGTAAG+GGG 0.565912 3_1:+94360426 None:intergenic
GATCAAGGTGCCATTTGCGG+TGG 0.568008 3_1:-94360056 Msa0389500:CDS
CCGACAAAGATTACCAACAT+TGG 0.570402 3_1:-94359904 Msa0389500:CDS
AACAATGGACTCACCAGGTG+TGG 0.570501 3_1:+94360306 None:intergenic
GTATTTCAGTTATAGGAAAG+GGG 0.570896 3_1:+94357514 None:intergenic
GTGTGGAGAAGAATTTGTCT+TGG 0.571094 3_1:+94360323 None:intergenic
TTGAAACACTACGTGGAAAG+AGG 0.579791 3_1:-94359696 Msa0389500:CDS
CAGGAATGAGTTGATGGAGA+AGG 0.584159 3_1:+94359620 None:intergenic
ATTAATAATTCCACATACTG+GGG 0.584467 3_1:-94358047 Msa0389500:CDS
TATTTCAGTTATAGGAAAGG+GGG 0.584658 3_1:+94357515 None:intergenic
CCACTTAAGTGCCCAAAAGA+GGG 0.592767 3_1:-94360736 Msa0389500:five_prime_UTR
TCTTCCATTCTAAGAAGCAA+AGG 0.595126 3_1:-94360457 Msa0389500:CDS
AAAGGTTCAATCAATAAGCA+TGG 0.595162 3_1:-94358959 Msa0389500:CDS
ACAAAGATTACCAACATTGG+AGG 0.598469 3_1:-94359901 Msa0389500:CDS
GGATACATGTGACGATAACA+AGG 0.600528 3_1:-94357629 Msa0389500:three_prime_UTR
GTGACACTTTCATTTGTACA+CGG 0.608400 3_1:-94357691 Msa0389500:three_prime_UTR
ATGGAAGAAGGTGAGAATGG+TGG 0.608866 3_1:+94360472 None:intergenic
GTTGGAGACTCTCTCAATCG+TGG 0.612428 3_1:-94359664 Msa0389500:CDS
GTGGTTGCCACCTCCAATGT+TGG 0.612456 3_1:+94359891 None:intergenic
AATTGACTTGCCAAGAACAT+GGG 0.614611 3_1:-94359931 Msa0389500:CDS
CACGGAAAAGAGTATAGCTA+CGG 0.614974 3_1:-94357673 Msa0389500:three_prime_UTR
AAGATTACCAACATTGGAGG+TGG 0.615305 3_1:-94359898 Msa0389500:CDS
TATGAAAAGTATGCTTAGAT+GGG 0.615716 3_1:-94358674 Msa0389500:CDS
AATTAGTTATACGTATATGA+GGG 0.618030 3_1:-94360760 Msa0389500:five_prime_UTR
TCAAGGTGCCATTTGCGGTG+GGG 0.620684 3_1:-94360054 Msa0389500:CDS
TATGGCAGGAGTATAGATTG+GGG 0.621719 3_1:-94358110 Msa0389500:intron
AAGCATGGTAGAAATTGGAA+AGG 0.640034 3_1:-94358944 Msa0389500:CDS
CATTGGAGGTGGCAACCACA+CGG 0.642871 3_1:-94359887 Msa0389500:CDS
TCTCCATCAACTCATTCCTG+AGG 0.645543 3_1:-94359617 Msa0389500:CDS
AAAGTATGCTTAGATGGGTG+AGG 0.645663 3_1:-94358669 Msa0389500:CDS
GATTGTCACAATTTCAACTG+AGG 0.649875 3_1:-94358713 Msa0389500:CDS
GCTATGCTGATTGTGTACAT+TGG 0.671303 3_1:-94357848 Msa0389500:CDS
GTATATTAGGAGAAAGTGGG+AGG 0.692881 3_1:+94360625 None:intergenic
GGCAGGAGTATAGATTGGGG+AGG 0.697427 3_1:-94358107 Msa0389500:intron
TTAGGAAGATCGCAACCGTG+TGG 0.699752 3_1:+94359872 None:intergenic
CGGTGGGGAAGACAGAGGAA+GGG 0.705520 3_1:-94360039 Msa0389500:CDS
GATTGGGGAGGTGAGCCAGG+AGG 0.708567 3_1:-94358095 Msa0389500:CDS
ATTTGCGGTGGGGAAGACAG+AGG 0.711107 3_1:-94360044 Msa0389500:CDS
GGATACACGACCATTGTACG+AGG 0.724636 3_1:-94359981 Msa0389500:CDS
TACCCAATAAGACATCACAA+TGG 0.732110 3_1:+94360709 None:intergenic
TTGATGCTTGAAACACTACG+TGG 0.805901 3_1:-94359703 Msa0389500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAATAATTATATTTAG+TGG + chr3_1:94358981-94359000 None:intergenic 10.0%
!!! TAATTTTCAAATAATCAAAA+TGG + chr3_1:94359359-94359378 None:intergenic 10.0%
!! TATTATAGATCAATTTAAAT+AGG + chr3_1:94359669-94359688 None:intergenic 10.0%
!! ATTTAAATTGATCTATAATA+TGG - chr3_1:94359669-94359688 Msa0389500:CDS 10.0%
!! TTAAAATCTTATGAATATGT+CGG + chr3_1:94357977-94357996 None:intergenic 15.0%
!!! AATATATTATGCCTTTTTTA+TGG - chr3_1:94358020-94358039 Msa0389500:CDS 15.0%
!!! TTTATTTGATGTTTTGTATT+TGG - chr3_1:94358043-94358062 Msa0389500:CDS 15.0%
!!! TTATTTGATGTTTTGTATTT+GGG - chr3_1:94358044-94358063 Msa0389500:CDS 15.0%
!! TTCACTTTAATGTAATAATT+TGG - chr3_1:94358844-94358863 Msa0389500:intron 15.0%
!! TGAAAATCAACAATAAAAAA+TGG + chr3_1:94359065-94359084 None:intergenic 15.0%
!! AAGTCTAAAAAAATTGAAAA+GGG + chr3_1:94359397-94359416 None:intergenic 15.0%
!!! AATTGTAGAGATTTTTTTTA+AGG + chr3_1:94359775-94359794 None:intergenic 15.0%
!!! AAAAAAAATCTCTACAATTT+TGG - chr3_1:94359776-94359795 Msa0389500:intron 15.0%
!! TAAACAAAACTTTATTCTTT+AGG - chr3_1:94359862-94359881 Msa0389500:intron 15.0%
!! CTAATATTTCAACAAATATA+TGG - chr3_1:94360028-94360047 Msa0389500:CDS 15.0%
!! TGAATTATCTATATATTGTT+AGG - chr3_1:94360732-94360751 Msa0389500:five_prime_UTR 15.0%
!!! TTTTAACTATTAGTGTTTTT+TGG + chr3_1:94360774-94360793 None:intergenic 15.0%
!! AAATTAGTTATACGTATATG+AGG - chr3_1:94357395-94357414 Msa0389500:three_prime_UTR 20.0%
!! AATTAGTTATACGTATATGA+GGG - chr3_1:94357396-94357415 Msa0389500:three_prime_UTR 20.0%
!! ATTGAATGTACTAGTATATT+AGG + chr3_1:94357547-94357566 None:intergenic 20.0%
!!! TTTTACATCAAAAAGTATAG+AGG - chr3_1:94357910-94357929 Msa0389500:CDS 20.0%
!! TAAAATCTTATGAATATGTC+GGG + chr3_1:94357976-94357995 None:intergenic 20.0%
!! CATCAAATAAACCATAAAAA+AGG + chr3_1:94358034-94358053 None:intergenic 20.0%
!!! TATTTGATGTTTTGTATTTG+GGG - chr3_1:94358045-94358064 Msa0389500:CDS 20.0%
!! GCATAAATAAATACTTACTT+AGG + chr3_1:94358305-94358324 None:intergenic 20.0%
!! TTCATAACAATAATGAAGAT+CGG + chr3_1:94358632-94358651 None:intergenic 20.0%
!! TTCATTATTGTTATGAATGA+TGG - chr3_1:94358635-94358654 Msa0389500:CDS 20.0%
!! AGTTAATTATAAGAGTGAAT+CGG - chr3_1:94358780-94358799 Msa0389500:intron 20.0%
!! CAAATAATCAAAATGGAAAA+GGG + chr3_1:94359352-94359371 None:intergenic 20.0%
!! TCAAATAATCAAAATGGAAA+AGG + chr3_1:94359353-94359372 None:intergenic 20.0%
!! CAAGTCTAAAAAAATTGAAA+AGG + chr3_1:94359398-94359417 None:intergenic 20.0%
!!! CTTTTCAATTTTTTTAGACT+TGG - chr3_1:94359396-94359415 Msa0389500:intron 20.0%
!! ACACATTTGTTCAAATATAA+AGG - chr3_1:94360401-94360420 Msa0389500:CDS 20.0%
!! CACATTTGTTCAAATATAAA+GGG - chr3_1:94360402-94360421 Msa0389500:CDS 20.0%
!!! ACTACAAAAAATTTGGAATT+TGG + chr3_1:94360667-94360686 None:intergenic 20.0%
!!! TCCAAATTTTTTGTAGTTTT+TGG - chr3_1:94360670-94360689 Msa0389500:five_prime_UTR 20.0%
!! ACCAAAAACTACAAAAAATT+TGG + chr3_1:94360674-94360693 None:intergenic 20.0%
!! TAAATAATAGTGAGTTGAGT+TGG - chr3_1:94357633-94357652 Msa0389500:three_prime_UTR 25.0%
! AAAAAGAATGAAAGCTAGAA+GGG + chr3_1:94357748-94357767 None:intergenic 25.0%
!! CTTTTTGTTACTATTCTCTA+TGG - chr3_1:94357762-94357781 Msa0389500:three_prime_UTR 25.0%
!!! TGTAGCATTTTTTGAAACAA+TGG + chr3_1:94357868-94357887 None:intergenic 25.0%
! AAAATCTTATGAATATGTCG+GGG + chr3_1:94357975-94357994 None:intergenic 25.0%
!! ATTTGATGTTTTGTATTTGG+GGG - chr3_1:94358046-94358065 Msa0389500:CDS 25.0%
! TTGATAAAAGAACGAGATAA+TGG - chr3_1:94358747-94358766 Msa0389500:intron 25.0%
!! TGATTTTCATGTGTTTAATC+AGG - chr3_1:94359076-94359095 Msa0389500:intron 25.0%
!!! TTTTCTTCTAGAATCAAACT+CGG - chr3_1:94359133-94359152 Msa0389500:intron 25.0%
! TCTGATAGAATTGTAAGAAA+AGG - chr3_1:94359179-94359198 Msa0389500:intron 25.0%
!!! ATCTTTTGATGATGAAGTAA+AGG - chr3_1:94359419-94359438 Msa0389500:intron 25.0%
!! TATGAAAAGTATGCTTAGAT+GGG - chr3_1:94359482-94359501 Msa0389500:intron 25.0%
!!! GTTTTGTTTATAATAGTGAC+CGG + chr3_1:94359852-94359871 None:intergenic 25.0%
!! ATACGCAAAATTTCACATTT+TGG + chr3_1:94359951-94359970 None:intergenic 25.0%
! GAAATATTAGAACTTAGAAG+TGG + chr3_1:94360018-94360037 None:intergenic 25.0%
! TATTTCAACAAATATATGGC+AGG - chr3_1:94360032-94360051 Msa0389500:CDS 25.0%
! TGATTAATAATTCCACATAC+TGG - chr3_1:94360107-94360126 Msa0389500:intron 25.0%
! GATTAATAATTCCACATACT+GGG - chr3_1:94360108-94360127 Msa0389500:intron 25.0%
! ATTAATAATTCCACATACTG+GGG - chr3_1:94360109-94360128 Msa0389500:intron 25.0%
!! AAAAGTATAATGCAAGTGAT+TGG - chr3_1:94360145-94360164 Msa0389500:intron 25.0%
! GTGATGTTAAGAAATGTAAT+TGG + chr3_1:94360196-94360215 None:intergenic 25.0%
! CTAATTGCTCTTTAGTTAAA+GGG + chr3_1:94360276-94360295 None:intergenic 25.0%
!! ACAAATGTGTACAATTTTCA+AGG + chr3_1:94360391-94360410 None:intergenic 25.0%
!! ATCATATATTGTTGTTCTCT+TGG - chr3_1:94360425-94360444 Msa0389500:CDS 25.0%
!! TGATTAATCTTTGTTTGCAA+AGG - chr3_1:94360506-94360525 Msa0389500:exon 25.0%
! GAATTTGGTATTTCAGTTAT+AGG + chr3_1:94360652-94360671 None:intergenic 25.0%
TGAACTTATGTCTTTGTTGA+TGG + chr3_1:94357499-94357518 None:intergenic 30.0%
CTAGTATATTAGGAGAAAGT+GGG + chr3_1:94357537-94357556 None:intergenic 30.0%
ACTAGTATATTAGGAGAAAG+TGG + chr3_1:94357538-94357557 None:intergenic 30.0%
! GTACTTTACTCTAAAAGACT+TGG + chr3_1:94357591-94357610 None:intergenic 30.0%
CAAAAAGAATGAAAGCTAGA+AGG + chr3_1:94357749-94357768 None:intergenic 30.0%
! TTTGATGTTTTGTATTTGGG+GGG - chr3_1:94358047-94358066 Msa0389500:CDS 30.0%
TGATATATTCAATGGAAGGT+GGG - chr3_1:94358142-94358161 Msa0389500:intron 30.0%
GAAAACAGTTAGTGAATCAA+AGG + chr3_1:94358583-94358602 None:intergenic 30.0%
AGAAATCATAAGTATTCGTG+TGG - chr3_1:94358694-94358713 Msa0389500:CDS 30.0%
GAAATCATAAGTATTCGTGT+GGG - chr3_1:94358695-94358714 Msa0389500:CDS 30.0%
AATCAACTAGAGTTAGTTGT+TGG + chr3_1:94358826-94358845 None:intergenic 30.0%
ATGCAACAATTGAGTTCTAT+TGG - chr3_1:94359105-94359124 Msa0389500:intron 30.0%
TGCAACAATTGAGTTCTATT+GGG - chr3_1:94359106-94359125 Msa0389500:intron 30.0%
! GAGTTTGATTCTAGAAGAAA+AGG + chr3_1:94359134-94359153 None:intergenic 30.0%
AAAGGTTCAATCAATAAGCA+TGG - chr3_1:94359197-94359216 Msa0389500:intron 30.0%
TCAATAAGCATGGTAGAAAT+TGG - chr3_1:94359207-94359226 Msa0389500:intron 30.0%
TGGTATTCAACACTTATCTT+TGG - chr3_1:94359246-94359265 Msa0389500:intron 30.0%
TATTCAACACTTATCTTTGG+TGG - chr3_1:94359249-94359268 Msa0389500:intron 30.0%
GCTTGTTTGAATAGAAAAGA+TGG + chr3_1:94359308-94359327 None:intergenic 30.0%
! CTATGAAAAGTATGCTTAGA+TGG - chr3_1:94359481-94359500 Msa0389500:intron 30.0%
!!! AAGAAGACTCTAGTTTTCTT+TGG + chr3_1:94359525-94359544 None:intergenic 30.0%
! GAAACCAAACCATACAATTT+TGG - chr3_1:94359746-94359765 Msa0389500:intron 30.0%
! TTAAGGTGTCCAAAATTGTA+TGG + chr3_1:94359758-94359777 None:intergenic 30.0%
TGCGTATAATAATGATCAGA+AGG - chr3_1:94359964-94359983 Msa0389500:CDS 30.0%
CTTCAATCTATAAGAAGCAA+TGG - chr3_1:94360248-94360267 Msa0389500:intron 30.0%
GCTAATTGCTCTTTAGTTAA+AGG + chr3_1:94360277-94360296 None:intergenic 30.0%
AAGGAAGAAAGAAATGAATG+AGG - chr3_1:94360546-94360565 Msa0389500:five_prime_UTR 30.0%
GTTAGTAGTTGTTCAAAGAA+AGG - chr3_1:94360582-94360601 Msa0389500:five_prime_UTR 30.0%
TATTTCAGTTATAGGAAAGG+GGG + chr3_1:94360644-94360663 None:intergenic 30.0%
GTATTTCAGTTATAGGAAAG+GGG + chr3_1:94360645-94360664 None:intergenic 30.0%
GGTATTTCAGTTATAGGAAA+GGG + chr3_1:94360646-94360665 None:intergenic 30.0%
TGGTATTTCAGTTATAGGAA+AGG + chr3_1:94360647-94360666 None:intergenic 30.0%
ACTCCATTGTGATGTCTTAT+TGG - chr3_1:94357444-94357463 Msa0389500:three_prime_UTR 35.0%
! CTCCATTGTGATGTCTTATT+GGG - chr3_1:94357445-94357464 Msa0389500:three_prime_UTR 35.0%
TACCCAATAAGACATCACAA+TGG + chr3_1:94357450-94357469 None:intergenic 35.0%
! TTGTGATGTCTTATTGGGTA+AGG - chr3_1:94357450-94357469 Msa0389500:three_prime_UTR 35.0%
!! ATAGTGAGTTGAGTTGGATT+TGG - chr3_1:94357639-94357658 Msa0389500:three_prime_UTR 35.0%
TTGCTTCTTAGAATGGAAGA+AGG + chr3_1:94357699-94357718 None:intergenic 35.0%
! TCTTCCATTCTAAGAAGCAA+AGG - chr3_1:94357699-94357718 Msa0389500:three_prime_UTR 35.0%
GAAGATTTCATGTGCATCTT+TGG - chr3_1:94357786-94357805 Msa0389500:CDS 35.0%
GGGTGAATAATGAAAAGAGA+GGG - chr3_1:94358067-94358086 Msa0389500:CDS 35.0%
! GAAGGGTGTGATATATTCAA+TGG - chr3_1:94358134-94358153 Msa0389500:intron 35.0%
GGTGTGATATATTCAATGGA+AGG - chr3_1:94358138-94358157 Msa0389500:intron 35.0%
GTGATATATTCAATGGAAGG+TGG - chr3_1:94358141-94358160 Msa0389500:intron 35.0%
GTCAATTGAGGTTGTATGTA+CGG + chr3_1:94358212-94358231 None:intergenic 35.0%
!! AATTGACTTGCCAAGAACAT+GGG - chr3_1:94358225-94358244 Msa0389500:intron 35.0%
!! CAATGTTGGTAATCTTTGTC+GGG + chr3_1:94358254-94358273 None:intergenic 35.0%
!! CCAATGTTGGTAATCTTTGT+CGG + chr3_1:94358255-94358274 None:intergenic 35.0%
ACAAAGATTACCAACATTGG+AGG - chr3_1:94358255-94358274 Msa0389500:intron 35.0%
ATCAAAGGTTTCCATGGATT+TGG + chr3_1:94358568-94358587 None:intergenic 35.0%
TAGTGAATCAAAGGTTTCCA+TGG + chr3_1:94358574-94358593 None:intergenic 35.0%
! ACTAACTGTTTTCACAGCAA+AGG - chr3_1:94358590-94358609 Msa0389500:intron 35.0%
! ACTAGAGTTAGTTGTTGGTT+AGG + chr3_1:94358821-94358840 None:intergenic 35.0%
AAGCATGGTAGAAATTGGAA+AGG - chr3_1:94359212-94359231 Msa0389500:intron 35.0%
!!! TTGGAAAGGTGTTGACATTT+TGG - chr3_1:94359226-94359245 Msa0389500:intron 35.0%
GATTGTCACAATTTCAACTG+AGG - chr3_1:94359443-94359462 Msa0389500:intron 35.0%
TATACTCACTTTCCATGAGA+AGG + chr3_1:94359561-94359580 None:intergenic 35.0%
GTGTCCAAAATTGTATGGTT+TGG + chr3_1:94359753-94359772 None:intergenic 35.0%
! ACATGCTCGTTGTTAATTTG+AGG + chr3_1:94359822-94359841 None:intergenic 35.0%
TGTTTATAATAGTGACCGGA+GGG + chr3_1:94359848-94359867 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG + chr3_1:94359849-94359868 None:intergenic 35.0%
! TATATGGCAGGAGTATAGAT+TGG - chr3_1:94360044-94360063 Msa0389500:CDS 35.0%
! ATATGGCAGGAGTATAGATT+GGG - chr3_1:94360045-94360064 Msa0389500:CDS 35.0%
TTGAAGTGTGTGCATCTTTA+CGG + chr3_1:94360234-94360253 None:intergenic 35.0%
! TACCTGGTCTTCAAGATAAT+TGG - chr3_1:94360335-94360354 Msa0389500:CDS 35.0%
TTCCAATTATCTTGAAGACC+AGG + chr3_1:94360340-94360359 None:intergenic 35.0%
! ATTGTTGTTCTCTTGGATCA+TGG - chr3_1:94360432-94360451 Msa0389500:CDS 35.0%
GTGACACTTTCATTTGTACA+CGG - chr3_1:94360465-94360484 Msa0389500:CDS 35.0%
! ACAATGGAGTTCCCTCTTTT+GGG + chr3_1:94357434-94357453 None:intergenic 40.0%
GTATATTAGGAGAAAGTGGG+AGG + chr3_1:94357534-94357553 None:intergenic 40.0%
AGAATGGAAGAAGGTGAGAA+TGG + chr3_1:94357690-94357709 None:intergenic 40.0%
ACGACCTTTGCTTCTTAGAA+TGG + chr3_1:94357706-94357725 None:intergenic 40.0%
TAGAAGGGTGAAAAGGTAAG+GGG + chr3_1:94357733-94357752 None:intergenic 40.0%
CTAGAAGGGTGAAAAGGTAA+GGG + chr3_1:94357734-94357753 None:intergenic 40.0%
TGAAAGCTAGAAGGGTGAAA+AGG + chr3_1:94357740-94357759 None:intergenic 40.0%
GTGTGGAGAAGAATTTGTCT+TGG + chr3_1:94357836-94357855 None:intergenic 40.0%
! TTTGAAACAATGGACTCACC+AGG + chr3_1:94357858-94357877 None:intergenic 40.0%
GCGAGTTTGAACTCTCTTAT+GGG + chr3_1:94357951-94357970 None:intergenic 40.0%
GGGGTGAATAATGAAAAGAG+AGG - chr3_1:94358066-94358085 Msa0389500:CDS 40.0%
! TATTCAATGGAAGGTGGGTT+TGG - chr3_1:94358147-94358166 Msa0389500:intron 40.0%
! ATTCAATGGAAGGTGGGTTT+GGG - chr3_1:94358148-94358167 Msa0389500:intron 40.0%
TGTTCTTGGCAAGTCAATTG+AGG + chr3_1:94358224-94358243 None:intergenic 40.0%
!! CAATTGACTTGCCAAGAACA+TGG - chr3_1:94358224-94358243 Msa0389500:intron 40.0%
CCGACAAAGATTACCAACAT+TGG - chr3_1:94358252-94358271 Msa0389500:intron 40.0%
AAGATTACCAACATTGGAGG+TGG - chr3_1:94358258-94358277 Msa0389500:intron 40.0%
TTGATGCTTGAAACACTACG+TGG - chr3_1:94358453-94358472 Msa0389500:intron 40.0%
TTGAAACACTACGTGGAAAG+AGG - chr3_1:94358460-94358479 Msa0389500:intron 40.0%
GGAAAGAGGATGATGTTTGT+TGG - chr3_1:94358474-94358493 Msa0389500:intron 40.0%
TAGAGATCATAGTGATCAGC+AGG - chr3_1:94358669-94358688 Msa0389500:CDS 40.0%
! ACTTATCTTTGGTGGATGAC+TGG - chr3_1:94359257-94359276 Msa0389500:intron 40.0%
AACTGAGGATGCTTATCGTA+TGG - chr3_1:94359458-94359477 Msa0389500:intron 40.0%
AAAGTATGCTTAGATGGGTG+AGG - chr3_1:94359487-94359506 Msa0389500:intron 40.0%
! TATGGCAGGAGTATAGATTG+GGG - chr3_1:94360046-94360065 Msa0389500:CDS 40.0%
TCATTGTAACAACTTCCTCC+TGG + chr3_1:94360079-94360098 None:intergenic 40.0%
CACAATCAGCATAGCTTACA+GGG + chr3_1:94360303-94360322 None:intergenic 40.0%
ACACAATCAGCATAGCTTAC+AGG + chr3_1:94360304-94360323 None:intergenic 40.0%
! GCTATGCTGATTGTGTACAT+TGG - chr3_1:94360308-94360327 Msa0389500:intron 40.0%
! TGTGTACATTGGTGTTTACC+TGG - chr3_1:94360319-94360338 Msa0389500:intron 40.0%
! CACGGAAAAGAGTATAGCTA+CGG - chr3_1:94360483-94360502 Msa0389500:CDS 40.0%
GGATACATGTGACGATAACA+AGG - chr3_1:94360527-94360546 Msa0389500:five_prime_UTR 40.0%
ACCACTTAAGTGCCCAAAAG+AGG - chr3_1:94357419-94357438 Msa0389500:three_prime_UTR 45.0%
CCACTTAAGTGCCCAAAAGA+GGG - chr3_1:94357420-94357439 Msa0389500:three_prime_UTR 45.0%
! CACAATGGAGTTCCCTCTTT+TGG + chr3_1:94357435-94357454 None:intergenic 45.0%
ATGGAAGAAGGTGAGAATGG+TGG + chr3_1:94357687-94357706 None:intergenic 45.0%
GCTAGAAGGGTGAAAAGGTA+AGG + chr3_1:94357735-94357754 None:intergenic 45.0%
GACAAATTCTTCTCCACACC+TGG - chr3_1:94357837-94357856 Msa0389500:CDS 45.0%
CGCGAGTTTGAACTCTCTTA+TGG + chr3_1:94357952-94357971 None:intergenic 45.0%
ACGACCATTGTACGAGGAAT+CGG - chr3_1:94358181-94358200 Msa0389500:intron 45.0%
!! CAGGAATGAGTTGATGGAGA+AGG + chr3_1:94358539-94358558 None:intergenic 45.0%
TCTCCATCAACTCATTCCTG+AGG - chr3_1:94358539-94358558 Msa0389500:intron 45.0%
! CATCCTCAGGAATGAGTTGA+TGG + chr3_1:94358545-94358564 None:intergenic 45.0%
CGGACAATGCTGTTGTTCAT+AGG - chr3_1:94359153-94359172 Msa0389500:intron 45.0%
ACTAGCATGTCACCTTCTCA+TGG - chr3_1:94359546-94359565 Msa0389500:intron 45.0%
ACAATCAGAACCCCAGTATG+TGG + chr3_1:94360122-94360141 None:intergenic 45.0%
TCTCTTGGATCATGGACTCT+TGG - chr3_1:94360440-94360459 Msa0389500:CDS 45.0%
CTCTTGGATCATGGACTCTT+GGG - chr3_1:94360441-94360460 Msa0389500:CDS 45.0%
! CCCTCTTTTGGGCACTTAAG+TGG + chr3_1:94357423-94357442 None:intergenic 50.0%
! AACAATGGACTCACCAGGTG+TGG + chr3_1:94357853-94357872 None:intergenic 50.0%
GAGGGTGAAGAAGCAGATCA+AGG - chr3_1:94358085-94358104 Msa0389500:CDS 50.0%
!! GCAGATCAAGGTGCCATTTG+CGG - chr3_1:94358097-94358116 Msa0389500:CDS 50.0%
!! ATCAAGGTGCCATTTGCGGT+GGG - chr3_1:94358101-94358120 Msa0389500:CDS 50.0%
GGATACACGACCATTGTACG+AGG - chr3_1:94358175-94358194 Msa0389500:intron 50.0%
CACTCCGATTCCTCGTACAA+TGG + chr3_1:94358188-94358207 None:intergenic 50.0%
TTAGGAAGATCGCAACCGTG+TGG + chr3_1:94358287-94358306 None:intergenic 50.0%
GTTGGAGACTCTCTCAATCG+TGG - chr3_1:94358492-94358511 Msa0389500:intron 50.0%
TCCTGAGGATGCCAAATCCA+TGG - chr3_1:94358554-94358573 Msa0389500:intron 50.0%
TCCATGGATTTGGCATCCTC+AGG + chr3_1:94358558-94358577 None:intergenic 50.0%
GTTAACACGCGGAGGATACT+TGG + chr3_1:94358876-94358895 None:intergenic 50.0%
CGAGCAACAACGTTAACACG+CGG + chr3_1:94358887-94358906 None:intergenic 50.0%
! TCTTTGGTGGATGACTGGCT+TGG - chr3_1:94359262-94359281 Msa0389500:intron 50.0%
!! GATCAAGGTGCCATTTGCGG+TGG - chr3_1:94358100-94358119 Msa0389500:CDS 55.0%
!! TCAAGGTGCCATTTGCGGTG+GGG - chr3_1:94358102-94358121 Msa0389500:CDS 55.0%
TCTGTCTTCCCCACCGCAAA+TGG + chr3_1:94358113-94358132 None:intergenic 55.0%
ATTTGCGGTGGGGAAGACAG+AGG - chr3_1:94358112-94358131 Msa0389500:intron 55.0%
TGTCGGGTCTCCCATGTTCT+TGG + chr3_1:94358238-94358257 None:intergenic 55.0%
GTGGTTGCCACCTCCAATGT+TGG + chr3_1:94358268-94358287 None:intergenic 55.0%
CATTGGAGGTGGCAACCACA+CGG - chr3_1:94358269-94358288 Msa0389500:intron 55.0%
GCAACAACGTTAACACGCGG+AGG + chr3_1:94358884-94358903 None:intergenic 55.0%
CAACGAGCATGTACACCCTC+CGG - chr3_1:94359830-94359849 Msa0389500:intron 55.0%
! GGCAGGAGTATAGATTGGGG+AGG - chr3_1:94360049-94360068 Msa0389500:CDS 55.0%
ATAGATTGGGGAGGTGAGCC+AGG - chr3_1:94360058-94360077 Msa0389500:CDS 55.0%
CGGTGGGGAAGACAGAGGAA+GGG - chr3_1:94358117-94358136 Msa0389500:intron 60.0%
! TGGAAGGTGGGTTTGGGACG+AGG - chr3_1:94358154-94358173 Msa0389500:intron 60.0%
GCGGTGGGGAAGACAGAGGA+AGG - chr3_1:94358116-94358135 Msa0389500:intron 65.0%
GATTGGGGAGGTGAGCCAGG+AGG - chr3_1:94360061-94360080 Msa0389500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 94357380 94360798 94357380 ID=Msa0389500;Name=Msa0389500
chr3_1 mRNA 94357380 94360798 94357380 ID=Msa0389500-mRNA-1;Parent=Msa0389500;Name=Msa0389500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=289|1|1|1|1|1|6|405|427
chr3_1 exon 94357380 94358124 94357380 ID=Msa0389500-mRNA-1:exon:26770;Parent=Msa0389500-mRNA-1
chr3_1 exon 94358607 94358765 94358607 ID=Msa0389500-mRNA-1:exon:26769;Parent=Msa0389500-mRNA-1
chr3_1 exon 94358881 94359080 94358881 ID=Msa0389500-mRNA-1:exon:26768;Parent=Msa0389500-mRNA-1
chr3_1 exon 94359567 94359738 94359567 ID=Msa0389500-mRNA-1:exon:26767;Parent=Msa0389500-mRNA-1
chr3_1 exon 94359872 94360094 94359872 ID=Msa0389500-mRNA-1:exon:26766;Parent=Msa0389500-mRNA-1
chr3_1 exon 94360320 94360798 94360320 ID=Msa0389500-mRNA-1:exon:26765;Parent=Msa0389500-mRNA-1
chr3_1 five_prime_UTR 94360510 94360798 94360510 ID=Msa0389500-mRNA-1:five_prime_utr;Parent=Msa0389500-mRNA-1
chr3_1 CDS 94360320 94360509 94360320 ID=Msa0389500-mRNA-1:cds;Parent=Msa0389500-mRNA-1
chr3_1 CDS 94359872 94360094 94359872 ID=Msa0389500-mRNA-1:cds;Parent=Msa0389500-mRNA-1
chr3_1 CDS 94359567 94359738 94359567 ID=Msa0389500-mRNA-1:cds;Parent=Msa0389500-mRNA-1
chr3_1 CDS 94358881 94359080 94358881 ID=Msa0389500-mRNA-1:cds;Parent=Msa0389500-mRNA-1
chr3_1 CDS 94358607 94358765 94358607 ID=Msa0389500-mRNA-1:cds;Parent=Msa0389500-mRNA-1
chr3_1 CDS 94357785 94358124 94357785 ID=Msa0389500-mRNA-1:cds;Parent=Msa0389500-mRNA-1
chr3_1 three_prime_UTR 94357380 94357784 94357380 ID=Msa0389500-mRNA-1:three_prime_utr;Parent=Msa0389500-mRNA-1
Gene Sequence

>Msa0389500

ATGCAAATAATGAAGCCACCATTCTCACCTTCTTCCATTCTAAGAAGCAAAGGTCGTTTCTCCCCTTACCTTTTCACCCTTCTAGCTTTCATTCTTTTTGTTACTATTCTCTATGGTGAAGATTTCATGTGCATCTTTGGTGAACAACTCTATAACTACTCTAACCAAGACAAATTCTTCTCCACACCTGAGAGGGTGAAGAAGCAGATCAAGGTGCCATTTGCGGTGGGGAAGACAGAGGAAGGGTGTGATATATTCAATGGAAGGTGGGTTTGGGACGAGGATACACGACCATTGTACGAGGAATCGGAGTGTCCGTACATACAACCTCAATTGACTTGCCAAGAACATGGGAGACCCGACAAAGATTACCAACATTGGAGGTGGCAACCACACGGTTGCGATCTTCCTAAATTCAATGCTAGCTTGATGCTTGAAACACTACGTGGAAAGAGGATGATGTTTGTTGGAGACTCTCTCAATCGTGGTCAATATGTTTCTTTTGTATGCCTTCTCCATCAACTCATTCCTGAGGATGCCAAATCCATGGAAACCTTTGATTCACTAACTGTTTTCACAGCAAAGGAATACAATGCAACAATTGAGTTCTATTGGGCACCTTTTCTTCTAGAATCAAACTCGGACAATGCTGTTGTTCATAGGATATCTGATAGAATTGTAAGAAAAGGTTCAATCAATAAGCATGGTAGAAATTGGAAAGGTGTTGACATTTTGGTATTCAACACTTATCTTTGGTGGATGACTGGCTTGGAGATGAAAATCTTACTTGGATCTTTTGATGATGAAGTAAAGGAGATTGTCACAATTTCAACTGAGGATGCTTATCGTATGGCTATGAAAAGTATGCTTAGATGGGTGAGGTTGAACATGAATCCAAAGAAAACTAGAGTCTTCTTCACTAGCATGTCACCTTCTCATGGAAAGAGTATAGATTGGGGAGGTGAGCCAGGAGGAAGTTGTTACAATGAAACAACTTTGATTAATAATTCCACATACTGGGGTTCTGATTGTAGAAAAAGTATAATGCAAGTGATTGGTGAAGTGTTAAGCAAAACAAAAGTTCCAATTACATTTCTTAACATCACACAACTCTCAAGTTACCGTAAAGATGCACACACTTCAATCTATAAGAAGCAATGGAGCCCTTTAACTAAAGAGCAATTAGCTAACCCTGTAAGCTATGCTGATTGTGTACATTGGTGTTTACCTGGTCTTCAAGATAATTGGAATGAACTTTTGTTTGCTAAGTTGTTTTATCCTTGA
Protein sequence

>Msa0389500

MQIMKPPFSPSSILRSKGRFSPYLFTLLAFILFVTILYGEDFMCIFGEQLYNYSNQDKFFSTPERVKKQIKVPFAVGKTEEGCDIFNGRWVWDEDTRPLYEESECPYIQPQLTCQEHGRPDKDYQHWRWQPHGCDLPKFNASLMLETLRGKRMMFVGDSLNRGQYVSFVCLLHQLIPEDAKSMETFDSLTVFTAKEYNATIEFYWAPFLLESNSDNAVVHRISDRIVRKGSINKHGRNWKGVDILVFNTYLWWMTGLEMKILLGSFDDEVKEIVTISTEDAYRMAMKSMLRWVRLNMNPKKTRVFFTSMSPSHGKSIDWGGEPGGSCYNETTLINNSTYWGSDCRKSIMQVIGEVLSKTKVPITFLNITQLSSYRKDAHTSIYKKQWSPLTKEQLANPVSYADCVHWCLPGLQDNWNELLFAKLFYP*