AlfalfaGEDB | Msa0164830

M. sativa cultivar zhongmu-4 / Msa0164830

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164830	KEH17599.1	22.872	940	558	39	69	899	1276	2157	5.26e-20	109
Msa0164830	KEH17599.1	38.848	538	289	14	412	935	984	1495	6.88e-80	297
Msa0164830	KEH17599.1	40.717	614	277	12	327	935	1407	1938	3.05e-110	387
Msa0164830	KEH17599.1	76.732	967	190	5	4	935	1495	2461	0.0	1482

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164830	A0A072TJ51	22.872	940	558	39	69	899	1276	2157	2.51e-20	109
Msa0164830	A0A072TJ51	38.848	538	289	14	412	935	984	1495	3.29e-80	297
Msa0164830	A0A072TJ51	40.717	614	277	12	327	935	1407	1938	1.46e-110	387
Msa0164830	A0A072TJ51	76.732	967	190	5	4	935	1495	2461	0.0	1482

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014120	Msa0164830	0.801641	8.182693e-49	-8.615850e-47
Msa0093440	Msa0164830	0.809162	2.168900e-50	-8.615850e-47
Msa0113800	Msa0164830	0.835343	1.773874e-56	-8.615850e-47
Msa0153890	Msa0164830	0.823730	1.183348e-53	-8.615850e-47
Msa0164830	Msa0225370	0.808091	3.671274e-50	-8.615850e-47
Msa0164830	Msa0227800	0.804717	1.889210e-49	-8.615850e-47
Msa0164830	Msa0266380	0.821967	3.046613e-53	-8.615850e-47
Msa0164830	Msa0304990	0.804283	2.326981e-49	-8.615850e-47
Msa0164830	Msa0341860	0.804060	2.589482e-49	-8.615850e-47
Msa0164830	Msa0403540	0.822900	1.849622e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0164830	MtrunA17_Chr1g0164011	76.629	967	191	5	4	935	1529	2495	0.0	1477
Msa0164830	MtrunA17_Chr1g0164011	40.554	614	278	12	327	935	1441	1972	1.58e-112	382
Msa0164830	MtrunA17_Chr1g0164011	38.848	538	289	14	412	935	1018	1529	5.58e-84	297
Msa0164830	MtrunA17_Chr1g0164011	22.872	940	558	39	69	899	1310	2191	4.89e-24	109
Msa0164830	MtrunA17_Chr1g0172231	66.953	1047	228	13	4	935	362	1405	0.0	1280
Msa0164830	MtrunA17_Chr1g0172231	44.698	613	331	6	327	935	274	882	1.48e-144	465
Msa0164830	MtrunA17_Chr1g0172231	38.360	378	206	9	569	935	1	362	1.42e-56	213
Msa0164830	MtrunA17_Chr1g0172231	28.444	225	140	7	161	373	1	216	2.28e-12	71.6
Msa0164830	MtrunA17_Chr1g0172231	27.115	461	254	22	10	415	975	1408	1.26e-11	68.9
Msa0164830	MtrunA17_Chr6g0474571	63.012	1049	268	11	4	935	2048	3093	0.0	1173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 158 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAGCATGTATGGA+AGG	0.552332	1_4:+44684737	Msa0164830:CDS
AAACTGATGAAGAAAATCAT+TGG	0.438662	1_4:+44686174	Msa0164830:CDS
AAACTTAAGGCATTCTTTGT+TGG	0.396154	1_4:+44684993	Msa0164830:CDS
AAAGAATTGTGAGAAGATGT+TGG	0.487041	1_4:+44687742	Msa0164830:CDS
AAAGCTTGAGCACATCTGGC+AGG	0.558070	1_4:+44687517	Msa0164830:CDS
AAATCATTCAGAAGAATAGT+TGG	0.499968	1_4:-44687353	None:intergenic
AAATTTAACCGGGTTGGAAG+TGG	0.456784	1_4:+44687643	Msa0164830:CDS
AACAAAGAATGCCTTAAGTT+TGG	0.345305	1_4:-44684991	None:intergenic
AACATCATAACTTTCAATTG+GGG	0.582571	1_4:-44686934	None:intergenic
AACATTAGACACATAACCGT+GGG	0.635957	1_4:+44685472	Msa0164830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACCATTGTCTCATCATT+TGG	-	chr1_4:44682213-44682232	Msa0164820:CDS	30.0%
TGTATCTACTTCTAACAAAG+CGG	-	chr1_4:44682339-44682358	Msa0164820:intron	30.0%
TCAAGAACATAATGCTTCTT+TGG	-	chr1_4:44682408-44682427	Msa0164820:CDS	30.0%
TCAATGATATGTTCATGTTC+AGG	+	chr1_4:44682482-44682501	Msa0164830:intron	30.0%
ATTGTCGAAGAATTAAAGCT+CGG	-	chr1_4:44682581-44682600	Msa0164820:intron	30.0%
CCAAAGAAGTGATAGAAATA+AGG	+	chr1_4:44682639-44682658	Msa0164830:intron	30.0%
TTTAATTCATCATTGGACCA+AGG	+	chr1_4:44682812-44682831	Msa0164830:intron	30.0%
AAATGTCATGACTGTTACTA+CGG	-	chr1_4:44682879-44682898	Msa0164820:intron	30.0%
GAATGTCAAAGTTATACCAA+TGG	-	chr1_4:44682939-44682958	Msa0164820:intron	30.0%
AGCAGAAAATTAAAGATGTG+GGG	-	chr1_4:44682967-44682986	Msa0164820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	44682166	44688138	44682166	ID=Msa0164830;Name=Msa0164830
chr1_4	mRNA	44682166	44688138	44682166	ID=Msa0164830-mRNA-1;Parent=Msa0164830;Name=Msa0164830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.28\|0\|0.75\|1\|1\|8\|0\|935
chr1_4	exon	44682166	44682177	44682166	ID=Msa0164830-mRNA-1:exon:12831;Parent=Msa0164830-mRNA-1
chr1_4	exon	44684432	44685172	44684432	ID=Msa0164830-mRNA-1:exon:12832;Parent=Msa0164830-mRNA-1
chr1_4	exon	44685385	44685493	44685385	ID=Msa0164830-mRNA-1:exon:12833;Parent=Msa0164830-mRNA-1
chr1_4	exon	44685592	44685690	44685592	ID=Msa0164830-mRNA-1:exon:12834;Parent=Msa0164830-mRNA-1
chr1_4	exon	44685967	44686241	44685967	ID=Msa0164830-mRNA-1:exon:12835;Parent=Msa0164830-mRNA-1
chr1_4	exon	44686409	44687152	44686409	ID=Msa0164830-mRNA-1:exon:12836;Parent=Msa0164830-mRNA-1
chr1_4	exon	44687227	44688051	44687227	ID=Msa0164830-mRNA-1:exon:12837;Parent=Msa0164830-mRNA-1
chr1_4	exon	44688136	44688138	44688136	ID=Msa0164830-mRNA-1:exon:12838;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44682166	44682177	44682166	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44684432	44685172	44684432	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44685385	44685493	44685385	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44685592	44685690	44685592	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44685967	44686241	44685967	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44686409	44687152	44686409	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44687227	44688051	44687227	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1
chr1_4	CDS	44688136	44688138	44688136	ID=Msa0164830-mRNA-1:cds;Parent=Msa0164830-mRNA-1

Gene Sequence

>Msa0164830

ATGGGTGGTGAGGTGGGATTTGGTAGTTTCAAGCATTTAAAACTATCTGAATATCCCGAGTTAAAAGAATTCTGGTATGGTCAACTTGAGCATAACACATTTAGGAGCTTGAAGCATCTAGTGGTTCATAAATGTGATTTTTTATCCAATGTACTCTTTCAAACTAACTTGCTAGAAGTGCTGATGAACTTGGAAGAATTAGTTGTGGAGGATTGTGATTCATTAGAAGCAGTTTTTGATTTGAAAGATGAATTTGCCAAAGAAATTGTTGTGCAGAATTGTAGTCAATTGAAGAAATTAAAACTATCTAATCTTCCAAAATTGAAGCATGTATGGAAGGAGGACCCTAAATACACTATGAGGTTTCAAAATTTAAATGATGTATCTGTTGTGGGATGCAATAGCTTGTTAAGCCTCTTTCCACTCTCAGTTGCTAGAGATATGATGCAACTTCAAAGTCTTCTAGTAAGGGAGTGTGGGATTCAAGAAATTGTTGCCAAGGAAGAAGGAACATATGAGATAGTTAACTTTGTGCTTCCTCATTTGACTTCCATTAAACTTGAGTACTTGACCAAACTTAAGGCATTCTTTGTTGGGGTTCATTCTCTTCAATGTAAATCATTGAAAAAGATCAAATTGTTTGGATGTCCAAGAATAGAGCTATTTAAGGCAGAGCCTTTGAGACACCAAGAAAGGTCCAGAAATGATGAGCTCAATATCTCAACATGTCAACCTCTCTTTGTGATTGAAGAGGTAGTTGCCAATGTGGAGAGTTTGTCTTTGAACAAAAAAGATTTTGGCATGATATTGCAGAGCCAATATTCAGGGTTTCAATTCAACAACATTAGACACATAACCGTGGAGATATTCCAAGGTGAAGAAATCATAAGAGGAGAAAAGGAAACTCAAATTCGCCTGCGACTCAAACAGTTGGAATTATGGCAACTGAGCAAGCTTCAATTCAACGGTAAAGAAGATGAGACAAACGAGGTTGTATTTTGCAGTTTACAAACTCTAGAACTAATTTCTTTACAAAGGCTCAGTTGTTTTTGCTCATGCCCATGGCCTATTAAGTTTCCGTTGCTGGAAGTTGTACTTGTCAAAGAATGTCCTCGAATGGAACTTTTTTCATTGGGAGTGACCAACACACGAAATCTTCAAAATGTACAAACTGATGAAGAAAATCATTGGGAGGGTGACCTCAACAGAACCGTAAATAAAATGTTTTATGATAAGGTTGCATTTGGTAAATTCGAGTACTTAGCCTTGTCTGACTATCCTGAGCTAAAGGATTTGTGGTATGGTCAACTTCATCACAACGTGTTCTGCAATTTGAAACATCTTGTTGTGGAAAGGTGTGATTTTTTATCACATGTACTTTTTCCATCAAATGTAATGCAAGTGCTTCAGACATTGGAAGAACTAGAAGTAAAAGATTGTGATTCATTAGAAGCAGTGTTTGATGTGAAAGGTATGAAGTCACAAGAAATATTGATTAAACAAAGCACTCAATTGAAAAGATTGACTTTGTCAAGTTTACCCAAATTGAAGCACATATGGAATGAGGATCCTCATGAAATCATCAGCTTTGGAAACTTATGCACAGTGGATGTTTCTATGTGCGAAAGCTTGTTATATATCTTTCCATATTCACTATGCCTAGATCTTGGCCATCTTGAAATGCTTAAGATAAAGTCTTGTGGAGTCAAGGAAATTGTTGCAATGGAAGAAGCTAGATCAATGGAAATTAATTTTAATTTTCCCCAATTGAAAGTTATGATGTTGTATCATTTGAAAAATCTGAAGAGTTTCTATCAAGGAAAGCATACTTTAGATTGCCCTTCATTGAAGACTTTGAATGTATATCGTTGTGAAGCATTAACAATGTTTTCTTTCGACAATTCAGACTTTCAACAACCTTACTCGGTTGATGAAAATCAGGACATGCTATTCCAACAACCCCTGTTTTGTATTGAAAAGTTGAGCCCCAATCTGGAGGAATTGGCAGTAAATGGCACAGATATGTTGGGGATATTGAGTGGTTATCGTCAAGAAAACATCTTTCATAAAGTCAAATTTCTTCGTTTACAATGCTTCGATGAAACTCCAACTATTCTTCTGAATGATTTCCATACAATATTTCCTAATGTTGAAACATTTCAAGTGCGTAATAGTTCTTTTGAAACATTGTTCCCCACTAAAGGAACCACAAGTTATCTTAGTTTGCAAATGTCAAATCAAATAAGAAAGTTGTGGCTTTTTGAATTGGTAAAGCTTGAGCACATCTGGCAGGAAGATTTTCCATTGGATTATCCTCCGTTCCAATATCTTGAAGAGTTACGTGCAGTGAATTGTCCAAGTTTGATAAGCTTGGTACCATCATCAACATCTTTCACAAATTTAACCGGGTTGGAAGTGGACAACTGCAAAGGGCTGGTCTATTTGATAACATTTTCAACAGCAAAAAGCCTAGTTCAACTCCAAACATTGAAAATAAAGAATTGTGAGAAGATGTTGGACGTTGTGGAGATTGACGATGAAAAAGCAGAGGATAACATCGTATTTGAAAACATGGAACACTTGGAACTTACTTCCTTGTCATGTTTGAGAAGCTTCTGCTCTGGGAAACAAGCAATCATATTCCCATCTTTAGTTCGTTTCGTCGTTAAAGAATGCCCTCAAATGAAAAGATTCTCATCAGAGGTCACAGTGTCACCATACCTGATAGGAATTCAAGTTGAAGAAAATAATATGCTATGGAAAGGCGATCTTAACACAACTATTGAACAATTGTTCATAGATAAGTGA

Protein sequence

>Msa0164830

MGGEVGFGSFKHLKLSEYPELKEFWYGQLEHNTFRSLKHLVVHKCDFLSNVLFQTNLLEVLMNLEELVVEDCDSLEAVFDLKDEFAKEIVVQNCSQLKKLKLSNLPKLKHVWKEDPKYTMRFQNLNDVSVVGCNSLLSLFPLSVARDMMQLQSLLVRECGIQEIVAKEEGTYEIVNFVLPHLTSIKLEYLTKLKAFFVGVHSLQCKSLKKIKLFGCPRIELFKAEPLRHQERSRNDELNISTCQPLFVIEEVVANVESLSLNKKDFGMILQSQYSGFQFNNIRHITVEIFQGEEIIRGEKETQIRLRLKQLELWQLSKLQFNGKEDETNEVVFCSLQTLELISLQRLSCFCSCPWPIKFPLLEVVLVKECPRMELFSLGVTNTRNLQNVQTDEENHWEGDLNRTVNKMFYDKVAFGKFEYLALSDYPELKDLWYGQLHHNVFCNLKHLVVERCDFLSHVLFPSNVMQVLQTLEELEVKDCDSLEAVFDVKGMKSQEILIKQSTQLKRLTLSSLPKLKHIWNEDPHEIISFGNLCTVDVSMCESLLYIFPYSLCLDLGHLEMLKIKSCGVKEIVAMEEARSMEINFNFPQLKVMMLYHLKNLKSFYQGKHTLDCPSLKTLNVYRCEALTMFSFDNSDFQQPYSVDENQDMLFQQPLFCIEKLSPNLEELAVNGTDMLGILSGYRQENIFHKVKFLRLQCFDETPTILLNDFHTIFPNVETFQVRNSSFETLFPTKGTTSYLSLQMSNQIRKLWLFELVKLEHIWQEDFPLDYPPFQYLEELRAVNCPSLISLVPSSTSFTNLTGLEVDNCKGLVYLITFSTAKSLVQLQTLKIKNCEKMLDVVEIDDEKAEDNIVFENMEHLELTSLSCLRSFCSGKQAIIFPSLVRFVVKECPQMKRFSSEVTVSPYLIGIQVEENNMLWKGDLNTTIEQLFIDK*