AlfalfaGEDB | Msa0681040

M. sativa cultivar zhongmu-4 / Msa0681040

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0681040	XP_003606225.1	94.922	768	31	2	1	760	1	768	0.0	1392

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0681040	sp\|Q9M7J4\|MFP1_TOBAC	46.288	687	345	8	19	696	26	697	3.34e-173	518

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0681040	G7JKW2	94.922	768	31	2	1	760	1	768	0.0	1392

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0681040	0.804994	1.653844e-49	-8.615850e-47
Msa0000220	Msa0681040	0.863232	2.884156e-64	-8.615850e-47
Msa0003370	Msa0681040	0.846738	1.798207e-59	-8.615850e-47
Msa0007160	Msa0681040	0.813184	2.910008e-51	-8.615850e-47
Msa0009210	Msa0681040	0.803305	3.714715e-49	-8.615850e-47
Msa0015370	Msa0681040	0.814734	1.325176e-51	-8.615850e-47
Msa0016830	Msa0681040	0.805581	1.245734e-49	-8.615850e-47
Msa0017060	Msa0681040	0.850606	1.522939e-60	-8.615850e-47
Msa0025060	Msa0681040	0.811781	5.896333e-51	-8.615850e-47
Msa0025340	Msa0681040	0.802330	5.906307e-49	-8.615850e-47

Showing 1 to 10 of 1,134 entries

Previous1 2 3 4 5…114Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0681040	MtrunA17_Chr4g0026951	94.922	768	31	2	1	760	1	768	0.0	1392

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0681040	AT3G16000.1	43.101	703	374	6	1	683	1	697	1.17e-147	449

Showing 1 to 1 of 1 entries

Previous1Next

Find 119 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAAGAGGAACTAGA+AGG	0.496547	4_4:+40905309	Msa0681040:CDS
AAAGAGTACTGTCACCAGTT+TGG	0.379797	4_4:+40904957	Msa0681040:CDS
AAAGGCTGAAGTCACATCAG+AGG	0.661801	4_4:+40905974	Msa0681040:CDS
AAAGTTGAAGTCTGAAGAGA+AGG	0.558645	4_4:+40905440	Msa0681040:CDS
AAATGAATCAAGCGAAAACC+AGG	0.577858	4_4:+40905539	Msa0681040:CDS
AACATACCACAACGGGAGCA+CGG	0.575250	4_4:-40900745	None:intergenic
AACGGGAGCACGGAGCTGCT+TGG	0.532674	4_4:-40900735	None:intergenic
AACGTTCTCTTGTTGCATAT+TGG	0.348683	4_4:-40900788	None:intergenic
AACTGTTGAAATGGATCTCG+AGG	0.549243	4_4:+40906088	Msa0681040:CDS
AAGAAATGACTCTACTGAAC+TGG	0.411333	4_4:+40905683	Msa0681040:CDS

Showing 1 to 10 of 119 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGAACGTTTCTGTTAAT+GGG	+	chr4_4:40900800-40900819	Msa0681040:CDS	30.0%
CATATCAAATGTTCGTTGTA+AGG	+	chr4_4:40901135-40901154	Msa0681040:intron	30.0%
ACATTAACTATCGAGAAAAG+GGG	-	chr4_4:40901620-40901639	None:intergenic	30.0%
TTAAATAAGCTCCTTGATCT+CGG	+	chr4_4:40901677-40901696	Msa0681040:intron	30.0%
TATAAAAATCACCGAGATCA+AGG	-	chr4_4:40901691-40901710	None:intergenic	30.0%
ACACTTCAAAAACTCTTTCT+TGG	+	chr4_4:40901814-40901833	Msa0681040:intron	30.0%
AGAATCGAAATTGGGAAATT+GGG	-	chr4_4:40901975-40901994	None:intergenic	30.0%
TCCTTTATATTGGACATTAG+TGG	+	chr4_4:40902482-40902501	Msa0681040:intron	30.0%
ACCACTAATGTCCAATATAA+AGG	-	chr4_4:40902486-40902505	None:intergenic	30.0%
CTTTGTGAAAATAAATCCCT+TGG	+	chr4_4:40902671-40902690	Msa0681040:intron	30.0%

Showing 1 to 10 of 390 entries

Previous1 2 3 4 5…39Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	40900620	40906649	40900620	ID=Msa0681040;Name=Msa0681040
chr4_4	mRNA	40900620	40906649	40900620	ID=Msa0681040-mRNA-1;Parent=Msa0681040;Name=Msa0681040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.75\|0.4\|1\|0.5\|0.6\|5\|0\|760
chr4_4	exon	40900620	40900760	40900620	ID=Msa0681040-mRNA-1:exon:9667;Parent=Msa0681040-mRNA-1
chr4_4	exon	40900782	40900893	40900782	ID=Msa0681040-mRNA-1:exon:9668;Parent=Msa0681040-mRNA-1
chr4_4	exon	40904082	40904125	40904082	ID=Msa0681040-mRNA-1:exon:9669;Parent=Msa0681040-mRNA-1
chr4_4	exon	40904221	40904361	40904221	ID=Msa0681040-mRNA-1:exon:9670;Parent=Msa0681040-mRNA-1
chr4_4	exon	40904805	40906649	40904805	ID=Msa0681040-mRNA-1:exon:9671;Parent=Msa0681040-mRNA-1
chr4_4	CDS	40900620	40900760	40900620	ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4	CDS	40900782	40900893	40900782	ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4	CDS	40904082	40904125	40904082	ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4	CDS	40904221	40904361	40904221	ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4	CDS	40904805	40906649	40904805	ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1

Gene Sequence

>Msa0681040

ATGGGTTTTGTTGGAGCAGCGAGTAGCACATCTTCATTGCTCCACTCTCCGCTTCTATACCCATTTCTCTTCCCTTCTTCTTCTTCTTCCTCTTCTTGTCGTTCCCATAGAACCACCAAGCAGCTCCGTGCTCCCGTTGTGCAAGATCCAATATGCAACAAGAGAACGTTTCTGTTAATGGGTGTTGCTGTTCTTCCCTTTCTCAAATTCAACACTGCCGATGCCGCTGTTGAAGGAATTCTTTCATCACCAAAAGAAAGTGAGGTGAAGATACCAGAGGATAAAAAGCTAGGCGAGGCAGCACCTGAAATGGAGAAACCATCTACTTCCTTTGTGTCTCTTCTGAATGGAATTGGAATCATATCTTCTGGTCTGTTGGGGGCTCTTTATGCACTTGCTCAGAAAGAAAAGTCAACTGCTGTTGCAACAATAGAAACAATGAGCAACAAACTGAAGGAAAAAGAAGAGCAGGTCGTTTCGTTGAGGAAGAACTACGAGTTGAAGTTATCGAACGAGCAGGAGGAACAAACCAAACTACTTGGAAAGGCAAAGGAAGAGCAGAAAGCTCTGATTGAACAACTAAATTCTGCAAAGAGTACTGTCACCAGTTTGGGAAAGGAGCTAAAAAGCGAGAAAAGTTTGGTTGCAGAGCTAAAACTTCAAATTGACAGACTTGAAGTCGATCTTACAAAGGCTGATACGGATAAGAAAGATCTTGAAAACAAATTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAACAAAGAATTAATCTGCTTAGTGAAGACCTCAAGGACAAAGAACATGTTGTTCAGAGTCTGAATTCATCCCTTGCAGAAAAGGAGTTGGAATTGAGAAATTTGAACTCTACCTATGACCAAACCAAAGATGAATTATCCAATGCTCATTTTCATATTCAAGGGTTAAAAGATGAAATACTGAAAAGCCAAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTGAGTTCCTTAACTCTTGAGAATAATAACTTAAGAAGTGAATATGATGTATTGGAGAAGGAATTCAATGACCAAAAGTTGAAGTCTGAAGAGAAGGCCACTTTGGATGCTAAGGTTTTGAAAGAAAAAGAAGACGAGCTTCATCAGCTAACGGATAAATTTGAACTCGCCTTAAATGAATCAAGCGAAAACCAGGTTGTCATCGCTGATTTAACCAAAGAACGAGAAGGTTTAAAAGAGTTCCTAGATAATGAATCAAAGAAAGTGAGTAATTTGAAGTATGAACTCCAAGTTACTCAAGAGAATCTTGAAAATTCAAGAAATGACTCTACTGAACTGGAAAAACAGCTAAGTAAGTCAAACAATCTGTGCAAAGATCTTGAGCTTCAGGTCTCTAAGCTTTCATCTGAGCTCGCCGAAGTTAAGGATTCGCTACAGAGTAGACTTGATGATGCAAAACTCGAGGCGGAAAAATTGACTAAGGAGCTGATAACAGTAAAGGAACATTTGAAGAAAGCCGAAGAAGAGCTGCAAAGTACCTCTCATGAACTAACGACTACACTTGAAACCCGCGATGGCCTACAAAAAGAATTAATTGAGATCTACAAAAAGGCTGAAGTCACATCAGAGGTTTTGAAGGAAGAAAAGAAGCTAGCTGCTTCTTTGAACAACGATTTACAGGCTTTGAAGGAGCAAGTATTGAAGGACAAGGAGTCACGAAGAACTGTTGAAATGGATCTCGAGGAGGCTACCAAATCACTAGATGAAATGAACCGAAATTCGGTGATCCTTTCTAGTGAATTAGAAGAGGCTAAATCACTTATTTCTAGCCTTGAAAATGAGAAAGAGGTTCTTGCCAAGTACCTTACAGAACAAAGAAATGCAAGCAAAGAGGCCCAAGAAAACATTGAAGATGCTCATAACCTCATTACTAGACTTGGCAAAGAGAGAGAGAGTTTAGAGAGCAGAGGGAAGAAATTGGAAGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGAAGTCAGATCAATTCTTCAAAATCAAAAGTTGTTAAAAATGAGCAGCAAGTACAGAAAAGTGAAGCTGAAACCAATTCTTCAAAATCAAAAGTAGTTAACAATGAGCAGCAAGTACAAGAAAATGCAGCTGAAACCAATTCTTCAAAATCAAAAGTTGTTAACAATGAGCAGCAGGTACAGAAAAATGAAGCCGAAACCAAAGAAGTCGTTGTAAGTGCACGGAAGAATGTTCGAAGAAGAAAGACTAATCCTTCATAA

Protein sequence

>Msa0681040

MGFVGAASSTSSLLHSPLLYPFLFPSSSSSSSCRSHRTTKQLRAPVVQDPICNKRTFLLMGVAVLPFLKFNTADAAVEGILSSPKESEVKIPEDKKLGEAAPEMEKPSTSFVSLLNGIGIISSGLLGALYALAQKEKSTAVATIETMSNKLKEKEEQVVSLRKNYELKLSNEQEEQTKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLVAELKLQIDRLEVDLTKADTDKKDLENKLKEKVDSIEILQQRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNSTYDQTKDELSNAHFHIQGLKDEILKSQEELEGKDSLVMELNSRVSSLTLENNNLRSEYDVLEKEFNDQKLKSEEKATLDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREGLKEFLDNESKKVSNLKYELQVTQENLENSRNDSTELEKQLSKSNNLCKDLELQVSKLSSELAEVKDSLQSRLDDAKLEAEKLTKELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKELIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTVEMDLEEATKSLDEMNRNSVILSSELEEAKSLISSLENEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKERESLESRGKKLEEELASAKGEILRLRSQINSSKSKVVKNEQQVQKSEAETNSSKSKVVNNEQQVQENAAETNSSKSKVVNNEQQVQKNEAETKEVVVSARKNVRRRKTNPS*