AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0681040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681040 MtrunA17_Chr4g0026951 94.922 768 31 2 1 760 1 768 0.0 1392
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681040 AT3G16000.1 43.101 703 374 6 1 683 1 697 1.17e-147 449

Find 119 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGATGGTTTCTCCATTTC+AGG 0.199946 4_4:-40904227 None:intergenic
CAAGAGAACGTTTCTGTTAA+TGG 0.203507 4_4:+40900799 Msa0681040:CDS
TTCTTTGAACAACGATTTAC+AGG 0.220730 4_4:+40906025 Msa0681040:CDS
AGAGAGCAGAGGGAAGAAAT+TGG 0.259658 4_4:+40906325 Msa0681040:CDS
GGAGCTGCTTGGTGGTTCTA+TGG 0.294399 4_4:-40900724 None:intergenic
AGCATTGGATAATTCATCTT+TGG 0.295929 4_4:-40905250 None:intergenic
ATCATATCTTCTGGTCTGTT+GGG 0.298617 4_4:+40904281 Msa0681040:CDS
CTTTGCCTTTCCAAGTAGTT+TGG 0.309873 4_4:-40904896 None:intergenic
GTGCAAAGATCTTGAGCTTC+AGG 0.312959 4_4:+40905734 Msa0681040:CDS
TCTCTTCAGACTTCAACTTT+TGG 0.316670 4_4:-40905437 None:intergenic
TGCACTTACAACGACTTCTT+TGG 0.317800 4_4:-40906588 None:intergenic
TACAACGACTTCTTTGGTTT+CGG 0.328405 4_4:-40906582 None:intergenic
TTGCATTTCTTTGTTCTGTA+AGG 0.330684 4_4:-40906229 None:intergenic
GAAGAAGAAGGGAAGAGAAA+TGG 0.331116 4_4:-40900680 None:intergenic
CTTTCTTTGATTCATTATCT+AGG 0.341810 4_4:-40905608 None:intergenic
AACGTTCTCTTGTTGCATAT+TGG 0.348683 4_4:-40900788 None:intergenic
AAGAGAACGTTTCTGTTAAT+GGG 0.356090 4_4:+40900800 Msa0681040:CDS
ATTAATTGAGATCTACAAAA+AGG 0.357996 4_4:+40905956 Msa0681040:CDS
AAGAGTACTGTCACCAGTTT+GGG 0.358487 4_4:+40904958 Msa0681040:CDS
GAAGAAATTGGAAGAGGAAT+TGG 0.359838 4_4:+40906337 Msa0681040:CDS
TAGAAAGGATCACCGAATTT+CGG 0.364977 4_4:-40906139 None:intergenic
GTTATTATTCTCAAGAGTTA+AGG 0.365187 4_4:-40905373 None:intergenic
ATCTGAGCTCGCCGAAGTTA+AGG 0.367535 4_4:+40905770 Msa0681040:CDS
TGGATAATTCATCTTTGGTT+TGG 0.368506 4_4:-40905245 None:intergenic
GTGTCTCTTCTGAATGGAAT+TGG 0.373150 4_4:+40904257 Msa0681040:CDS
CAAGATTCTCTTGAGTAACT+TGG 0.375297 4_4:-40905653 None:intergenic
TCCTTTGTGTCTCTTCTGAA+TGG 0.376856 4_4:+40904251 Msa0681040:CDS
AAGAAGAAGGGAAGAGAAAT+GGG 0.376997 4_4:-40900679 None:intergenic
TTCATCTTTGGTTTGGTCAT+AGG 0.377065 4_4:-40905238 None:intergenic
AAAGAGTACTGTCACCAGTT+TGG 0.379797 4_4:+40904957 Msa0681040:CDS
GTTCATTTCATCTAGTGATT+TGG 0.384110 4_4:-40906117 None:intergenic
AATCATATCTTCTGGTCTGT+TGG 0.389869 4_4:+40904280 Msa0681040:CDS
CAACGATTTACAGGCTTTGA+AGG 0.401530 4_4:+40906034 Msa0681040:CDS
GAATTCATCCCTTGCAGAAA+AGG 0.404773 4_4:+40905188 Msa0681040:CDS
AAGAAATGACTCTACTGAAC+TGG 0.411333 4_4:+40905683 Msa0681040:CDS
GAAGAGGAAGAAGAAGAAGA+AGG 0.425813 4_4:-40900692 None:intergenic
TGGACAGGCAGCACCTGAAA+TGG 0.426569 4_4:+40904214 Msa0681040:intron
ACTGCCGATGCCGCTGTTGA+AGG 0.430461 4_4:+40900854 Msa0681040:CDS
AGATGAAATGAACCGAAATT+CGG 0.435411 4_4:+40906127 Msa0681040:CDS
GGTACTTTGCAGCTCTTCTT+CGG 0.439223 4_4:-40905883 None:intergenic
TCTTTGTTCTGTAAGGTACT+TGG 0.441168 4_4:-40906222 None:intergenic
GTCTGAAGAGAAGGCCACTT+TGG 0.441380 4_4:+40905449 Msa0681040:CDS
GGAATTGGAATCATATCTTC+TGG 0.443046 4_4:+40904272 Msa0681040:CDS
GTCACGAAGAACTGTTGAAA+TGG 0.446236 4_4:+40906079 Msa0681040:CDS
TAGCCTTGAAAATGAGAAAG+AGG 0.448244 4_4:+40906193 Msa0681040:CDS
CGAGAGCAACATACCACAAC+GGG 0.451068 4_4:-40900752 None:intergenic
AAGAAGTGAATATGATGTAT+TGG 0.464888 4_4:+40905398 Msa0681040:CDS
CCTCTTCTAATTCACTAGAA+AGG 0.465124 4_4:-40906154 None:intergenic
CAACATGTTCTTTGTCCTTG+AGG 0.467033 4_4:-40905155 None:intergenic
CAACCGCAATATTTCACCCT+TGG 0.468447 4_4:-40906366 None:intergenic
GGCAGTGTTGAATTTGAGAA+AGG 0.471651 4_4:-40900837 None:intergenic
TCATATCTTCTGGTCTGTTG+GGG 0.477091 4_4:+40904282 Msa0681040:CDS
CGATCTTACAAAGGCTGATA+CGG 0.477419 4_4:+40905047 Msa0681040:CDS
AGAGACACAAAGGAAGTAGA+TGG 0.480663 4_4:-40904242 None:intergenic
GAAGGCCACTTTGGATGCTA+AGG 0.485310 4_4:+40905458 Msa0681040:CDS
TGAAAACAAATTGAAAGAAA+AGG 0.486501 4_4:+40905083 Msa0681040:CDS
TTTGAAGGAGCAAGTATTGA+AGG 0.492700 4_4:+40906049 Msa0681040:CDS
AATTCCTTCAACAGCGGCAT+CGG 0.493404 4_4:-40900858 None:intergenic
GAGAGAGTTTAGAGAGCAGA+GGG 0.494703 4_4:+40906315 Msa0681040:CDS
AAAAGCCAAGAGGAACTAGA+AGG 0.496547 4_4:+40905309 Msa0681040:CDS
CATAACCTCATTACTAGACT+TGG 0.503381 4_4:+40906284 Msa0681040:CDS
ATCCCTTGCAGAAAAGGAGT+TGG 0.505112 4_4:+40905194 Msa0681040:CDS
GAGCTGCTTGGTGGTTCTAT+GGG 0.506268 4_4:-40900723 None:intergenic
ACTAGAAGGAAAAGATTCCT+TGG 0.509288 4_4:+40905323 Msa0681040:CDS
TTGAATATGAAAATGAGCAT+TGG 0.513802 4_4:-40905265 None:intergenic
GGGAGCACGGAGCTGCTTGG+TGG 0.514022 4_4:-40900732 None:intergenic
AGGAAAAGATTCCTTGGTGA+TGG 0.515184 4_4:+40905329 Msa0681040:CDS
GAGGAACAAACCAAACTACT+TGG 0.517707 4_4:+40904886 Msa0681040:CDS
CTTTGCCAAGTCTAGTAATG+AGG 0.519176 4_4:-40906289 None:intergenic
CAGAGGGAAGAAATTGGAAG+AGG 0.524169 4_4:+40906331 Msa0681040:CDS
AGTTGTTAACAATGAGCAGC+AGG 0.529237 4_4:+40906544 Msa0681040:CDS
AACGGGAGCACGGAGCTGCT+TGG 0.532674 4_4:-40900735 None:intergenic
TGAATATGATGTATTGGAGA+AGG 0.538059 4_4:+40905404 Msa0681040:CDS
TACTGTCACCAGTTTGGGAA+AGG 0.541631 4_4:+40904963 Msa0681040:CDS
GCAGTGTTGAATTTGAGAAA+GGG 0.546459 4_4:-40900836 None:intergenic
AGAGGAATTGGCTTCTGCCA+AGG 0.547273 4_4:+40906349 Msa0681040:CDS
AACTGTTGAAATGGATCTCG+AGG 0.549243 4_4:+40906088 Msa0681040:CDS
AGAGAGAGTTTAGAGAGCAG+AGG 0.552368 4_4:+40906314 Msa0681040:CDS
AAGAGAAATGGGTATAGAAG+CGG 0.554477 4_4:-40900668 None:intergenic
AAAGTTGAAGTCTGAAGAGA+AGG 0.558645 4_4:+40905440 Msa0681040:CDS
CCTTTCTAGTGAATTAGAAG+AGG 0.560312 4_4:+40906154 Msa0681040:CDS
GCAGCTCCGTGCTCCCGTTG+TGG 0.560542 4_4:+40900739 Msa0681040:CDS
AAGAGCAGGTCGTTTCGTTG+AGG 0.574604 4_4:+40904830 Msa0681040:CDS
AACATACCACAACGGGAGCA+CGG 0.575250 4_4:-40900745 None:intergenic
GAGGAATTGGCTTCTGCCAA+GGG 0.577429 4_4:+40906350 Msa0681040:CDS
AAATGAATCAAGCGAAAACC+AGG 0.577858 4_4:+40905539 Msa0681040:CDS
CTGCCAAGGGTGAAATATTG+CGG 0.583288 4_4:+40906363 Msa0681040:CDS
TAAGGAGCTGATAACAGTAA+AGG 0.584606 4_4:+40905845 Msa0681040:CDS
GTTGAAGTTATCGAACGAGC+AGG 0.586669 4_4:+40904864 Msa0681040:CDS
TCTGCTTAGTGAAGACCTCA+AGG 0.589218 4_4:+40905140 Msa0681040:CDS
TTAAATCAGCGATGACAACC+TGG 0.590178 4_4:-40905557 None:intergenic
ACAAACCAAACTACTTGGAA+AGG 0.594982 4_4:+40904891 Msa0681040:CDS
ACAAAGAAATGCAAGCAAAG+AGG 0.598046 4_4:+40906238 Msa0681040:CDS
CATATCTTCTGGTCTGTTGG+GGG 0.603076 4_4:+40904283 Msa0681040:CDS
TCTATGGGAACGACAAGAAG+AGG 0.603571 4_4:-40900708 None:intergenic
AAGAAGTCGTTGTAAGTGCA+CGG 0.605490 4_4:+40906591 Msa0681040:CDS
ATGGGTATAGAAGCGGAGAG+TGG 0.608813 4_4:-40900661 None:intergenic
GATTTAACCAAAGAACGAGA+AGG 0.619090 4_4:+40905573 Msa0681040:CDS
CTGTAGCGAATCCTTAACTT+CGG 0.622154 4_4:-40905781 None:intergenic
TGAATTTAGTTCCATCACCA+AGG 0.625407 4_4:-40905340 None:intergenic
TCCATTCAGAAGAGACACAA+AGG 0.626993 4_4:-40904252 None:intergenic
CAAACTACTTGGAAAGGCAA+AGG 0.627372 4_4:+40904897 Msa0681040:CDS
AGACGAGCTTCATCAGCTAA+CGG 0.631119 4_4:+40905497 Msa0681040:CDS
ACAGATGAGCAACAAACTGA+AGG 0.633690 4_4:+40904801 Msa0681040:intron
TGTAGTCGTTAGTTCATGAG+AGG 0.649860 4_4:-40905904 None:intergenic
CAAAACCTTAGCATCCAAAG+TGG 0.651075 4_4:-40905463 None:intergenic
GAAGTTATCGAACGAGCAGG+AGG 0.659936 4_4:+40904867 Msa0681040:CDS
TCTCCTTACAGAAGAAAGTG+AGG 0.661466 4_4:+40904071 Msa0681040:intron
AAAGGCTGAAGTCACATCAG+AGG 0.661801 4_4:+40905974 Msa0681040:CDS
TGAAAGAATTCCTTCAACAG+CGG 0.674803 4_4:-40900864 None:intergenic
ACTACACTTGAAACCCGCGA+TGG 0.675763 4_4:+40905921 Msa0681040:CDS
TGATGATGCAAAACTCGAGG+CGG 0.676692 4_4:+40905812 Msa0681040:CDS
ACTTGATGATGCAAAACTCG+AGG 0.683771 4_4:+40905809 Msa0681040:CDS
GGAGCAAGTATTGAAGGACA+AGG 0.687727 4_4:+40906055 Msa0681040:CDS
AAGTGAGGTGAAGATACCAG+AGG 0.692163 4_4:+40904086 Msa0681040:CDS
ACTTGAAGTCGATCTTACAA+AGG 0.692206 4_4:+40905038 Msa0681040:CDS
TGAAATACTGAAAAGCCAAG+AGG 0.694568 4_4:+40905299 Msa0681040:CDS
TGTTGAAATGGATCTCGAGG+AGG 0.699159 4_4:+40906091 Msa0681040:CDS
ACGAGAGCAACATACCACAA+CGG 0.704981 4_4:-40900753 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAACAATAATTTAAT+TGG - chr4_4:40900946-40900965 None:intergenic 10.0%
!!! ATTTGTATTACTTTTTATAA+TGG + chr4_4:40902769-40902788 Msa0681040:intron 10.0%
!!! TTAAAATGGTTAATTTTTAA+AGG + chr4_4:40904729-40904748 Msa0681040:intron 10.0%
!! ATTAATGTAGTTTATATTGT+TGG - chr4_4:40901344-40901363 None:intergenic 15.0%
!! AATATTTGAAAGTTTAATGA+AGG + chr4_4:40901436-40901455 Msa0681040:intron 15.0%
!!! CTTTAAAATACAGTTTTAAA+AGG - chr4_4:40901530-40901549 None:intergenic 15.0%
!!! TACAAAATAGTATTTTAGTT+AGG + chr4_4:40901892-40901911 Msa0681040:intron 15.0%
!!! TGTGTTTTTAAAATATTTTG+CGG + chr4_4:40902364-40902383 Msa0681040:intron 15.0%
!! AAAAGTAATACAAATTAGTT+TGG - chr4_4:40902764-40902783 None:intergenic 15.0%
!!! TATTAGTTTTTTTGCAAAAT+AGG - chr4_4:40903110-40903129 None:intergenic 15.0%
!!! TTTGATAGTTAATTAACTAA+AGG - chr4_4:40903769-40903788 None:intergenic 15.0%
!!! TCTATCTAGTTTTTTTAAAA+TGG + chr4_4:40904715-40904734 Msa0681040:intron 15.0%
!! AATGTAATAAGAAACATACT+TGG - chr4_4:40900893-40900912 None:intergenic 20.0%
!!! ATTATGACATTATCTTGTTT+TGG + chr4_4:40900966-40900985 Msa0681040:intron 20.0%
!!! TTATGACATTATCTTGTTTT+GGG + chr4_4:40900967-40900986 Msa0681040:intron 20.0%
!!! TTAATGTTAAGGGTATATTT+GGG + chr4_4:40901633-40901652 Msa0681040:intron 20.0%
!!! CTATTTTGTAACACTTTTAA+AGG - chr4_4:40901882-40901901 None:intergenic 20.0%
!!! TATTACTTTTTATAATGGAC+TGG + chr4_4:40902774-40902793 Msa0681040:intron 20.0%
!! CAAAGAAATATCTGATATTT+GGG - chr4_4:40902894-40902913 None:intergenic 20.0%
!! TCAAAGAAATATCTGATATT+TGG - chr4_4:40902895-40902914 None:intergenic 20.0%
!! CTGAAAAATTAGTTATAAGT+GGG + chr4_4:40903175-40903194 Msa0681040:intron 20.0%
!! GAAAAAAAGATTGGAAAAAA+AGG + chr4_4:40903390-40903409 Msa0681040:intron 20.0%
!! TCTAGAAATAGAATATTATG+AGG + chr4_4:40903690-40903709 Msa0681040:intron 20.0%
!!! ACTTTCATTTATTTTCTTCA+AGG + chr4_4:40903718-40903737 Msa0681040:intron 20.0%
!! AGTAAAGTTATAGTTTAAAG+AGG + chr4_4:40904631-40904650 Msa0681040:intron 20.0%
!! TGAAAACAAATTGAAAGAAA+AGG + chr4_4:40905083-40905102 Msa0681040:CDS 20.0%
!!! TCTCAATTAATTCTTTTTGT+AGG - chr4_4:40905947-40905966 None:intergenic 20.0%
!! ATTAATTGAGATCTACAAAA+AGG + chr4_4:40905956-40905975 Msa0681040:CDS 20.0%
!!! TACTTTTGATTTTGAAGAAT+TGG - chr4_4:40906465-40906484 None:intergenic 20.0%
!!! AACTTTTGATTTTGAAGAAT+TGG - chr4_4:40906402-40906421 None:intergenic 20.0%
! TTTATATTGTTGGAACTTAG+GGG - chr4_4:40901334-40901353 None:intergenic 25.0%
! GTTTATATTGTTGGAACTTA+GGG - chr4_4:40901335-40901354 None:intergenic 25.0%
! AGTTTATATTGTTGGAACTT+AGG - chr4_4:40901336-40901355 None:intergenic 25.0%
! ATATATCTCACATTACATAG+GGG - chr4_4:40901386-40901405 None:intergenic 25.0%
! CATATATCTCACATTACATA+GGG - chr4_4:40901387-40901406 None:intergenic 25.0%
! ACATATATCTCACATTACAT+AGG - chr4_4:40901388-40901407 None:intergenic 25.0%
! AACATTAACTATCGAGAAAA+GGG - chr4_4:40901621-40901640 None:intergenic 25.0%
! TAACATTAACTATCGAGAAA+AGG - chr4_4:40901622-40901641 None:intergenic 25.0%
! TTTCTCGATAGTTAATGTTA+AGG + chr4_4:40901622-40901641 Msa0681040:intron 25.0%
! TTCTCGATAGTTAATGTTAA+GGG + chr4_4:40901623-40901642 Msa0681040:intron 25.0%
!! GTTAATGTTAAGGGTATATT+TGG + chr4_4:40901632-40901651 Msa0681040:intron 25.0%
!! TAATGTTAAGGGTATATTTG+GGG + chr4_4:40901634-40901653 Msa0681040:intron 25.0%
! AGACTAAAATTTCTATACGT+GGG - chr4_4:40901930-40901949 None:intergenic 25.0%
! AAGACTAAAATTTCTATACG+TGG - chr4_4:40901931-40901950 None:intergenic 25.0%
! TTTAAAAATTAGCATCTGTG+TGG + chr4_4:40902341-40902360 Msa0681040:intron 25.0%
! ACTCTTTACTAGTTGTTAAT+TGG + chr4_4:40902641-40902660 Msa0681040:intron 25.0%
! AAATATCTGATATTTGGGTA+AGG - chr4_4:40902889-40902908 None:intergenic 25.0%
!! CCACTTATAACTAATTTTTC+AGG - chr4_4:40903177-40903196 None:intergenic 25.0%
! CCTGAAAAATTAGTTATAAG+TGG + chr4_4:40903174-40903193 Msa0681040:intron 25.0%
! TTGATACCACCTTAAAATTT+GGG - chr4_4:40903251-40903270 None:intergenic 25.0%
! TTTGATACCACCTTAAAATT+TGG - chr4_4:40903252-40903271 None:intergenic 25.0%
! AAAAAGATTGGAAAAAAAGG+TGG + chr4_4:40903393-40903412 Msa0681040:intron 25.0%
! TTAACTACCATACTATATGT+TGG + chr4_4:40903506-40903525 Msa0681040:intron 25.0%
! AGAATGAAATGAGAAGAATA+TGG + chr4_4:40903545-40903564 Msa0681040:intron 25.0%
! TAATTTCAATGAGAGAAAGT+GGG - chr4_4:40903581-40903600 None:intergenic 25.0%
! ATAATTTCAATGAGAGAAAG+TGG - chr4_4:40903582-40903601 None:intergenic 25.0%
! ATTGAAATTATTCAGCGAAA+AGG + chr4_4:40903591-40903610 Msa0681040:intron 25.0%
!!! TATTTCTAGATACGAATAGA+AGG - chr4_4:40903680-40903699 None:intergenic 25.0%
!! ATCTCCTTTTGACATATTAA+TGG - chr4_4:40903867-40903886 None:intergenic 25.0%
! TGATTCAAGAAAGGATAATT+TGG - chr4_4:40903892-40903911 None:intergenic 25.0%
! AATGCATGCATATACATATA+TGG - chr4_4:40903918-40903937 None:intergenic 25.0%
! TAGTTCACATCACAAAATTA+AGG - chr4_4:40903975-40903994 None:intergenic 25.0%
! TTCTAAACTTATTGCTTCTA+TGG + chr4_4:40904194-40904213 Msa0681040:intron 25.0%
!! CTTTTCAATTTCTCAAATCT+TGG + chr4_4:40904550-40904569 Msa0681040:intron 25.0%
!! ATGTGTTAGTCATATTTTAC+TGG + chr4_4:40904769-40904788 Msa0681040:intron 25.0%
! TTGAATATGAAAATGAGCAT+TGG - chr4_4:40905268-40905287 None:intergenic 25.0%
!! AATGCTCATTTTCATATTCA+AGG + chr4_4:40905267-40905286 Msa0681040:CDS 25.0%
!! ATGCTCATTTTCATATTCAA+GGG + chr4_4:40905268-40905287 Msa0681040:CDS 25.0%
! GTTATTATTCTCAAGAGTTA+AGG - chr4_4:40905376-40905395 None:intergenic 25.0%
! AAGAAGTGAATATGATGTAT+TGG + chr4_4:40905398-40905417 Msa0681040:CDS 25.0%
AAGAGAACGTTTCTGTTAAT+GGG + chr4_4:40900800-40900819 Msa0681040:CDS 30.0%
CATATCAAATGTTCGTTGTA+AGG + chr4_4:40901135-40901154 Msa0681040:intron 30.0%
! GGAAATATGAGGTGTATTTT+TGG + chr4_4:40901156-40901175 Msa0681040:intron 30.0%
!! GTTTAATGAAGGTGCATTTT+TGG + chr4_4:40901447-40901466 Msa0681040:intron 30.0%
ACATTAACTATCGAGAAAAG+GGG - chr4_4:40901620-40901639 None:intergenic 30.0%
TTAAATAAGCTCCTTGATCT+CGG + chr4_4:40901677-40901696 Msa0681040:intron 30.0%
TATAAAAATCACCGAGATCA+AGG - chr4_4:40901691-40901710 None:intergenic 30.0%
ACACTTCAAAAACTCTTTCT+TGG + chr4_4:40901814-40901833 Msa0681040:intron 30.0%
AGAATCGAAATTGGGAAATT+GGG - chr4_4:40901975-40901994 None:intergenic 30.0%
TCCTTTATATTGGACATTAG+TGG + chr4_4:40902482-40902501 Msa0681040:intron 30.0%
ACCACTAATGTCCAATATAA+AGG - chr4_4:40902486-40902505 None:intergenic 30.0%
!! GACTTAGTTTGCATTAAACT+AGG - chr4_4:40902551-40902570 None:intergenic 30.0%
!! CAAGGGATTTATTTTCACAA+AGG - chr4_4:40902673-40902692 None:intergenic 30.0%
CTTTGTGAAAATAAATCCCT+TGG + chr4_4:40902671-40902690 Msa0681040:intron 30.0%
AATCCAAGAACAATGTTCAA+TGG + chr4_4:40903036-40903055 Msa0681040:intron 30.0%
CTAACTCAACCATACAAATT+TGG - chr4_4:40903222-40903241 None:intergenic 30.0%
CAAATTTGTATGGTTGAGTT+AGG + chr4_4:40903220-40903239 Msa0681040:intron 30.0%
! TTTTCCAATCTTTTTTTCCC+AGG - chr4_4:40903388-40903407 None:intergenic 30.0%
! AATCCGGTTTTTGTAAGATT+GGG + chr4_4:40903435-40903454 Msa0681040:intron 30.0%
TTTCCCTACCAATTCAAAAT+GGG + chr4_4:40903625-40903644 Msa0681040:intron 30.0%
! AAACCCATTTTGAATTGGTA+GGG - chr4_4:40903631-40903650 None:intergenic 30.0%
! TAAACCCATTTTGAATTGGT+AGG - chr4_4:40903632-40903651 None:intergenic 30.0%
! GGTTTAAACCCATTTTGAAT+TGG - chr4_4:40903636-40903655 None:intergenic 30.0%
AAGAAAAGAAGAATACTCAG+AGG - chr4_4:40903657-40903676 None:intergenic 30.0%
TCTTCAAGGATGTAAATAAC+TGG + chr4_4:40903732-40903751 Msa0681040:intron 30.0%
CAATAACAAAGTAGCAAATC+AGG - chr4_4:40903809-40903828 None:intergenic 30.0%
AGCTCCATTAATATGTCAAA+AGG + chr4_4:40903860-40903879 Msa0681040:intron 30.0%
ATATGGTCATGATTCAAGAA+AGG - chr4_4:40903901-40903920 None:intergenic 30.0%
TGTATATGCATGCATTGTTT+CGG + chr4_4:40903922-40903941 Msa0681040:intron 30.0%
ATCCAAAGGACAAAAACAAT+AGG - chr4_4:40904165-40904184 None:intergenic 30.0%
TAGAATACGTAAACATCCAA+AGG - chr4_4:40904179-40904198 None:intergenic 30.0%
TTGCAACAATAGAAACAGTA+AGG + chr4_4:40904345-40904364 Msa0681040:intron 30.0%
AATTTCTCAAATCTTGGTCT+CGG + chr4_4:40904556-40904575 Msa0681040:intron 30.0%
TATAGTTTAAAGAGGAAGTG+AGG + chr4_4:40904639-40904658 Msa0681040:intron 30.0%
ATAGTTTAAAGAGGAAGTGA+GGG + chr4_4:40904640-40904659 Msa0681040:intron 30.0%
! TCCTCTAGAAACATCAAAAA+GGG - chr4_4:40904675-40904694 None:intergenic 30.0%
! TTCCTCTAGAAACATCAAAA+AGG - chr4_4:40904676-40904695 None:intergenic 30.0%
TGGATAATTCATCTTTGGTT+TGG - chr4_4:40905248-40905267 None:intergenic 30.0%
! AGCATTGGATAATTCATCTT+TGG - chr4_4:40905253-40905272 None:intergenic 30.0%
TGAATATGATGTATTGGAGA+AGG + chr4_4:40905404-40905423 Msa0681040:CDS 30.0%
! GTTTTCGCTTGATTCATTTA+AGG - chr4_4:40905538-40905557 None:intergenic 30.0%
! TTTTAAACCTTCTCGTTCTT+TGG - chr4_4:40905583-40905602 None:intergenic 30.0%
TTCTTTGAACAACGATTTAC+AGG + chr4_4:40906025-40906044 Msa0681040:CDS 30.0%
GTTCATTTCATCTAGTGATT+TGG - chr4_4:40906120-40906139 None:intergenic 30.0%
AGATGAAATGAACCGAAATT+CGG + chr4_4:40906127-40906146 Msa0681040:CDS 30.0%
TTGCATTTCTTTGTTCTGTA+AGG - chr4_4:40906232-40906251 None:intergenic 30.0%
! AGCATCTTCAATGTTTTCTT+GGG - chr4_4:40906264-40906283 None:intergenic 30.0%
AAGAGAAATGGGTATAGAAG+CGG - chr4_4:40900671-40900690 None:intergenic 35.0%
AAGAAGAAGGGAAGAGAAAT+GGG - chr4_4:40900682-40900701 None:intergenic 35.0%
AAGAGGAAGAAGAAGAAGAA+GGG - chr4_4:40900694-40900713 None:intergenic 35.0%
AACGTTCTCTTGTTGCATAT+TGG - chr4_4:40900791-40900810 None:intergenic 35.0%
CAAGAGAACGTTTCTGTTAA+TGG + chr4_4:40900799-40900818 Msa0681040:CDS 35.0%
! GCAGTGTTGAATTTGAGAAA+GGG - chr4_4:40900839-40900858 None:intergenic 35.0%
TGAAAGAATTCCTTCAACAG+CGG - chr4_4:40900867-40900886 None:intergenic 35.0%
!!! TGACATTATCTTGTTTTGGG+TGG + chr4_4:40900970-40900989 Msa0681040:intron 35.0%
!!! GACATTATCTTGTTTTGGGT+GGG + chr4_4:40900971-40900990 Msa0681040:intron 35.0%
!!! ACATTATCTTGTTTTGGGTG+GGG + chr4_4:40900972-40900991 Msa0681040:intron 35.0%
CTAACCAAGTGTCATAAAAC+CGG + chr4_4:40901046-40901065 Msa0681040:intron 35.0%
GTTCGTTGTAAGGAAATATG+AGG + chr4_4:40901145-40901164 Msa0681040:intron 35.0%
! TTTTGGTCGCATTATAAGTG+TGG + chr4_4:40901173-40901192 Msa0681040:intron 35.0%
TTTGGTCGCATTATAAGTGT+GGG + chr4_4:40901174-40901193 Msa0681040:intron 35.0%
AACATTCGGATCATCACATT+GGG - chr4_4:40901303-40901322 None:intergenic 35.0%
AAACATTCGGATCATCACAT+TGG - chr4_4:40901304-40901323 None:intergenic 35.0%
! GTGATGATCCGAATGTTTTA+AGG + chr4_4:40901306-40901325 Msa0681040:intron 35.0%
ACTCCTCTGATACTTTAGTT+AGG + chr4_4:40901844-40901863 Msa0681040:intron 35.0%
! ATGCCTAACTAAAGTATCAG+AGG - chr4_4:40901850-40901869 None:intergenic 35.0%
GAGAATCGAAATTGGGAAAT+TGG - chr4_4:40901976-40901995 None:intergenic 35.0%
GGAAATGGAGAATCGAAATT+GGG - chr4_4:40901983-40902002 None:intergenic 35.0%
CAATTTCGATTCTCCATTTC+CGG + chr4_4:40901982-40902001 Msa0681040:intron 35.0%
GAAGATGAAGACTGAAAAAG+AGG - chr4_4:40902020-40902039 None:intergenic 35.0%
AATTCAGGTACCTCTTTGAT+TGG + chr4_4:40902220-40902239 Msa0681040:intron 35.0%
! TACCTCTTTGATTGGTTACA+TGG + chr4_4:40902228-40902247 Msa0681040:intron 35.0%
GCAGACTAAGTTTCAAACTA+AGG - chr4_4:40902279-40902298 None:intergenic 35.0%
TGTGTCAGTGTCCTTTATAT+TGG + chr4_4:40902472-40902491 Msa0681040:intron 35.0%
TTGCATTAAACTAGGAAGCA+CGG - chr4_4:40902543-40902562 None:intergenic 35.0%
TTCCACTAGGAAAATCCATT+GGG - chr4_4:40902581-40902600 None:intergenic 35.0%
AGAGTAAGATTTCTCTCCAA+GGG - chr4_4:40902690-40902709 None:intergenic 35.0%
AAGAGTAAGATTTCTCTCCA+AGG - chr4_4:40902691-40902710 None:intergenic 35.0%
CTATTTCATCTGTCCATTTG+AGG - chr4_4:40902727-40902746 None:intergenic 35.0%
TGTCCATTGAACATTGTTCT+TGG - chr4_4:40903042-40903061 None:intergenic 35.0%
ACAATGTTCAATGGACAGTT+TGG + chr4_4:40903045-40903064 Msa0681040:intron 35.0%
CAATGTTCAATGGACAGTTT+GGG + chr4_4:40903046-40903065 Msa0681040:intron 35.0%
! ATTTTCTCAGAGTCTCACAT+TGG + chr4_4:40903140-40903159 Msa0681040:intron 35.0%
! AAATTTGGCTTACAAGGTGA+GGG - chr4_4:40903207-40903226 None:intergenic 35.0%
! CCATACAAATTTGGCTTACA+AGG - chr4_4:40903213-40903232 None:intergenic 35.0%
CCTTGTAAGCCAAATTTGTA+TGG + chr4_4:40903210-40903229 Msa0681040:intron 35.0%
! TAGGCACAACCCAAATTTTA+AGG + chr4_4:40903239-40903258 Msa0681040:intron 35.0%
AAAGTTTATCCAAGATCCGT+CGG + chr4_4:40903269-40903288 Msa0681040:intron 35.0%
ACACTCCAAATATTCAATCC+TGG + chr4_4:40903319-40903338 Msa0681040:intron 35.0%
CACTCCAAATATTCAATCCT+GGG + chr4_4:40903320-40903339 Msa0681040:intron 35.0%
ACTCCAAATATTCAATCCTG+GGG + chr4_4:40903321-40903340 Msa0681040:intron 35.0%
GTGTGTTAAGAGTCTCAAAT+TGG + chr4_4:40903351-40903370 Msa0681040:intron 35.0%
AAATTGGATGAGATATGACC+TGG + chr4_4:40903367-40903386 Msa0681040:intron 35.0%
AATTGGATGAGATATGACCT+GGG + chr4_4:40903368-40903387 Msa0681040:intron 35.0%
ATGACCTGGGAAAAAAAGAT+TGG + chr4_4:40903381-40903400 Msa0681040:intron 35.0%
AGATTGGAAAAAAAGGTGGT+AGG + chr4_4:40903397-40903416 Msa0681040:intron 35.0%
! CAATCCGGTTTTTGTAAGAT+TGG + chr4_4:40903434-40903453 Msa0681040:intron 35.0%
GAACCCAATCTTACAAAAAC+CGG - chr4_4:40903441-40903460 None:intergenic 35.0%
! GGTTTTTGTAAGATTGGGTT+CGG + chr4_4:40903440-40903459 Msa0681040:intron 35.0%
! AAACGTTCCATGTGATGTTT+TGG + chr4_4:40903476-40903495 Msa0681040:intron 35.0%
ACTACCATACTATATGTTGG+TGG + chr4_4:40903509-40903528 Msa0681040:intron 35.0%
TCAACCACCAACATATAGTA+TGG - chr4_4:40903516-40903535 None:intergenic 35.0%
GTTTCCCTACCAATTCAAAA+TGG + chr4_4:40903624-40903643 Msa0681040:intron 35.0%
ACAAAGTAGCAAATCAGGAA+GGG - chr4_4:40903804-40903823 None:intergenic 35.0%
AACAAAGTAGCAAATCAGGA+AGG - chr4_4:40903805-40903824 None:intergenic 35.0%
ACATCACAAAATTAAGGACG+TGG - chr4_4:40903969-40903988 None:intergenic 35.0%
! CTGTTTAGTGAAGTATCACT+TGG + chr4_4:40904015-40904034 Msa0681040:intron 35.0%
ACTTTCTTCTGTAAGGAGAA+TGG - chr4_4:40904070-40904089 None:intergenic 35.0%
ATACCAGAGGATAAAAAGCT+AGG + chr4_4:40904099-40904118 Msa0681040:CDS 35.0%
!!! TGCCTATTGTTTTTGTCCTT+TGG + chr4_4:40904160-40904179 Msa0681040:intron 35.0%
AACTTATTGCTTCTATGGAC+AGG + chr4_4:40904199-40904218 Msa0681040:intron 35.0%
GGAATTGGAATCATATCTTC+TGG + chr4_4:40904272-40904291 Msa0681040:CDS 35.0%
AATCATATCTTCTGGTCTGT+TGG + chr4_4:40904280-40904299 Msa0681040:CDS 35.0%
ATCATATCTTCTGGTCTGTT+GGG + chr4_4:40904281-40904300 Msa0681040:CDS 35.0%
GAAAACCAGTAAGACATGTA+TGG + chr4_4:40904394-40904413 Msa0681040:intron 35.0%
GCACAAACATTTCAGATTGA+CGG + chr4_4:40904450-40904469 Msa0681040:intron 35.0%
!!! TCCCTTTTTGATGTTTCTAG+AGG + chr4_4:40904671-40904690 Msa0681040:intron 35.0%
ACAAACCAAACTACTTGGAA+AGG + chr4_4:40904891-40904910 Msa0681040:CDS 35.0%
GCTAAAAAGCGAGAAAAGTT+TGG + chr4_4:40904987-40905006 Msa0681040:CDS 35.0%
ACTTGAAGTCGATCTTACAA+AGG + chr4_4:40905038-40905057 Msa0681040:CDS 35.0%
!! TTCATCTTTGGTTTGGTCAT+AGG - chr4_4:40905241-40905260 None:intergenic 35.0%
TGAAATACTGAAAAGCCAAG+AGG + chr4_4:40905299-40905318 Msa0681040:CDS 35.0%
ACTAGAAGGAAAAGATTCCT+TGG + chr4_4:40905323-40905342 Msa0681040:CDS 35.0%
! TGAATTTAGTTCCATCACCA+AGG - chr4_4:40905343-40905362 None:intergenic 35.0%
! TCTCTTCAGACTTCAACTTT+TGG - chr4_4:40905440-40905459 None:intergenic 35.0%
AAAGTTGAAGTCTGAAGAGA+AGG + chr4_4:40905440-40905459 Msa0681040:CDS 35.0%
AAATGAATCAAGCGAAAACC+AGG + chr4_4:40905539-40905558 Msa0681040:CDS 35.0%
GATTTAACCAAAGAACGAGA+AGG + chr4_4:40905573-40905592 Msa0681040:CDS 35.0%
CAAGATTCTCTTGAGTAACT+TGG - chr4_4:40905656-40905675 None:intergenic 35.0%
AAGAAATGACTCTACTGAAC+TGG + chr4_4:40905683-40905702 Msa0681040:CDS 35.0%
TAAGGAGCTGATAACAGTAA+AGG + chr4_4:40905845-40905864 Msa0681040:CDS 35.0%
!! TTTGAAGGAGCAAGTATTGA+AGG + chr4_4:40906049-40906068 Msa0681040:CDS 35.0%
TAGAAAGGATCACCGAATTT+CGG - chr4_4:40906142-40906161 None:intergenic 35.0%
CCTCTTCTAATTCACTAGAA+AGG - chr4_4:40906157-40906176 None:intergenic 35.0%
! CCTTTCTAGTGAATTAGAAG+AGG + chr4_4:40906154-40906173 Msa0681040:CDS 35.0%
! TAGCCTTGAAAATGAGAAAG+AGG + chr4_4:40906193-40906212 Msa0681040:CDS 35.0%
! GAACCTCTTTCTCATTTTCA+AGG - chr4_4:40906199-40906218 None:intergenic 35.0%
! TCTTTGTTCTGTAAGGTACT+TGG - chr4_4:40906225-40906244 None:intergenic 35.0%
ACAAAGAAATGCAAGCAAAG+AGG + chr4_4:40906238-40906257 Msa0681040:CDS 35.0%
! GAGCATCTTCAATGTTTTCT+TGG - chr4_4:40906265-40906284 None:intergenic 35.0%
CATAACCTCATTACTAGACT+TGG + chr4_4:40906284-40906303 Msa0681040:CDS 35.0%
GAAGAAATTGGAAGAGGAAT+TGG + chr4_4:40906337-40906356 Msa0681040:CDS 35.0%
! TACAACGACTTCTTTGGTTT+CGG - chr4_4:40906585-40906604 None:intergenic 35.0%
GAAGAAGAAGGGAAGAGAAA+TGG - chr4_4:40900683-40900702 None:intergenic 40.0%
GAAGAGGAAGAAGAAGAAGA+AGG - chr4_4:40900695-40900714 None:intergenic 40.0%
! GGCAGTGTTGAATTTGAGAA+AGG - chr4_4:40900840-40900859 None:intergenic 40.0%
AATGTCTTGGTCGATGATGA+CGG + chr4_4:40901002-40901021 Msa0681040:intron 40.0%
! GATGACGGTCTTAGAATTTG+TGG + chr4_4:40901017-40901036 Msa0681040:intron 40.0%
ACGGTCTTAGAATTTGTGGT+TGG + chr4_4:40901021-40901040 Msa0681040:intron 40.0%
CGGTCTTAGAATTTGTGGTT+GGG + chr4_4:40901022-40901041 Msa0681040:intron 40.0%
!! CGGTTTTATGACACTTGGTT+AGG - chr4_4:40901048-40901067 None:intergenic 40.0%
!! CAAACCGGTTTTATGACACT+TGG - chr4_4:40901053-40901072 None:intergenic 40.0%
!! TAAAACCGGTTTGTGATGTG+AGG + chr4_4:40901060-40901079 Msa0681040:intron 40.0%
ATCTTCGTGAAGCCATAAGT+GGG - chr4_4:40901092-40901111 None:intergenic 40.0%
TATCTTCGTGAAGCCATAAG+TGG - chr4_4:40901093-40901112 None:intergenic 40.0%
GAGTGACTCGTATACTTATG+TGG + chr4_4:40901247-40901266 Msa0681040:intron 40.0%
TAGGGGAGCCTTAAAACATT+CGG - chr4_4:40901317-40901336 None:intergenic 40.0%
CTATGAGTGTCATGCTTCTT+AGG - chr4_4:40901722-40901741 None:intergenic 40.0%
! CTAAGAAGCATGACACTCAT+AGG + chr4_4:40901720-40901739 Msa0681040:intron 40.0%
CGGAAATGGAGAATCGAAAT+TGG - chr4_4:40901984-40902003 None:intergenic 40.0%
AAAGAGGCGAATTATGAGAC+CGG - chr4_4:40902004-40902023 None:intergenic 40.0%
ACATCAGCATCCACAAATTC+AGG + chr4_4:40902205-40902224 Msa0681040:intron 40.0%
!! CAAAGAGGTACCTGAATTTG+TGG - chr4_4:40902218-40902237 None:intergenic 40.0%
CACCATGTAACCAATCAAAG+AGG - chr4_4:40902233-40902252 None:intergenic 40.0%
ACTAAGTCATGTGTACCCAA+TGG + chr4_4:40902563-40902582 Msa0681040:intron 40.0%
!! TACCCAATGGATTTTCCTAG+TGG + chr4_4:40902576-40902595 Msa0681040:intron 40.0%
CTTCCACTAGGAAAATCCAT+TGG - chr4_4:40902582-40902601 None:intergenic 40.0%
! GTTGCTTTATCAGCCTCAAA+TGG + chr4_4:40902711-40902730 Msa0681040:intron 40.0%
TGAGTGAAACTCCATCACTA+TGG + chr4_4:40902803-40902822 Msa0681040:intron 40.0%
! CAAATTTGGCTTACAAGGTG+AGG - chr4_4:40903208-40903227 None:intergenic 40.0%
!! GCACAACCCAAATTTTAAGG+TGG + chr4_4:40903242-40903261 Msa0681040:intron 40.0%
AAGTTTATCCAAGATCCGTC+GGG + chr4_4:40903270-40903289 Msa0681040:intron 40.0%
CTCCAAATATTCAATCCTGG+GGG + chr4_4:40903322-40903341 Msa0681040:intron 40.0%
AAATATTCAATCCTGGGGGT+GGG + chr4_4:40903326-40903345 Msa0681040:intron 40.0%
GCTTCTCTCATCTTACAATC+CGG + chr4_4:40903419-40903438 Msa0681040:intron 40.0%
GGACACAACTAACAAAGCAA+GGG - chr4_4:40903948-40903967 None:intergenic 40.0%
TGGACACAACTAACAAAGCA+AGG - chr4_4:40903949-40903968 None:intergenic 40.0%
TCTCCTTACAGAAGAAAGTG+AGG + chr4_4:40904071-40904090 Msa0681040:intron 40.0%
TCACCTCACTTTCTTCTGTA+AGG - chr4_4:40904077-40904096 None:intergenic 40.0%
GTAGATGGTTTCTCCATTTC+AGG - chr4_4:40904230-40904249 None:intergenic 40.0%
AGAGACACAAAGGAAGTAGA+TGG - chr4_4:40904245-40904264 None:intergenic 40.0%
TCCTTTGTGTCTCTTCTGAA+TGG + chr4_4:40904251-40904270 Msa0681040:CDS 40.0%
TCCATTCAGAAGAGACACAA+AGG - chr4_4:40904255-40904274 None:intergenic 40.0%
GTGTCTCTTCTGAATGGAAT+TGG + chr4_4:40904257-40904276 Msa0681040:CDS 40.0%
TCATATCTTCTGGTCTGTTG+GGG + chr4_4:40904282-40904301 Msa0681040:CDS 40.0%
AAAGGCCATACATGTCTTAC+TGG - chr4_4:40904402-40904421 None:intergenic 40.0%
TAAGACATGTATGGCCTTTG+AGG + chr4_4:40904403-40904422 Msa0681040:intron 40.0%
AGAAGAGAGACATTCCTCAA+AGG - chr4_4:40904420-40904439 None:intergenic 40.0%
TGTCAGTGTCATACAAGTCT+CGG - chr4_4:40904506-40904525 None:intergenic 40.0%
ACAGATGAGCAACAAACTGA+AGG + chr4_4:40904801-40904820 Msa0681040:intron 40.0%
ACTGAAGGAAAAAGAAGAGC+AGG + chr4_4:40904816-40904835 Msa0681040:CDS 40.0%
GAGGAACAAACCAAACTACT+TGG + chr4_4:40904886-40904905 Msa0681040:CDS 40.0%
CTTTGCCTTTCCAAGTAGTT+TGG - chr4_4:40904899-40904918 None:intergenic 40.0%
CAAACTACTTGGAAAGGCAA+AGG + chr4_4:40904897-40904916 Msa0681040:CDS 40.0%
!! AAAGAGTACTGTCACCAGTT+TGG + chr4_4:40904957-40904976 Msa0681040:CDS 40.0%
!! AAGAGTACTGTCACCAGTTT+GGG + chr4_4:40904958-40904977 Msa0681040:CDS 40.0%
!!! TTTTAGCTCCTTTCCCAAAC+TGG - chr4_4:40904974-40904993 None:intergenic 40.0%
CGATCTTACAAAGGCTGATA+CGG + chr4_4:40905047-40905066 Msa0681040:CDS 40.0%
CAACATGTTCTTTGTCCTTG+AGG - chr4_4:40905158-40905177 None:intergenic 40.0%
GAATTCATCCCTTGCAGAAA+AGG + chr4_4:40905188-40905207 Msa0681040:CDS 40.0%
! TTCCAACTCCTTTTCTGCAA+GGG - chr4_4:40905199-40905218 None:intergenic 40.0%
! ATTCCAACTCCTTTTCTGCA+AGG - chr4_4:40905200-40905219 None:intergenic 40.0%
AAAAGCCAAGAGGAACTAGA+AGG + chr4_4:40905309-40905328 Msa0681040:CDS 40.0%
!!! CTTTTCCTTCTAGTTCCTCT+TGG - chr4_4:40905317-40905336 None:intergenic 40.0%
AGGAAAAGATTCCTTGGTGA+TGG + chr4_4:40905329-40905348 Msa0681040:CDS 40.0%
CAAAACCTTAGCATCCAAAG+TGG - chr4_4:40905466-40905485 None:intergenic 40.0%
TTAAATCAGCGATGACAACC+TGG - chr4_4:40905560-40905579 None:intergenic 40.0%
CTGTAGCGAATCCTTAACTT+CGG - chr4_4:40905784-40905803 None:intergenic 40.0%
!! ACTTGATGATGCAAAACTCG+AGG + chr4_4:40905809-40905828 Msa0681040:CDS 40.0%
TGTAGTCGTTAGTTCATGAG+AGG - chr4_4:40905907-40905926 None:intergenic 40.0%
! ATTCTTTTTGTAGGCCATCG+CGG - chr4_4:40905938-40905957 None:intergenic 40.0%
!! AGTCACATCAGAGGTTTTGA+AGG + chr4_4:40905983-40906002 Msa0681040:CDS 40.0%
! CAACGATTTACAGGCTTTGA+AGG + chr4_4:40906034-40906053 Msa0681040:CDS 40.0%
GTCACGAAGAACTGTTGAAA+TGG + chr4_4:40906079-40906098 Msa0681040:CDS 40.0%
AACTGTTGAAATGGATCTCG+AGG + chr4_4:40906088-40906107 Msa0681040:CDS 40.0%
CTTTGCCAAGTCTAGTAATG+AGG - chr4_4:40906292-40906311 None:intergenic 40.0%
AGTTGTTAACAATGAGCAGC+AGG + chr4_4:40906544-40906563 Msa0681040:CDS 40.0%
TGCACTTACAACGACTTCTT+TGG - chr4_4:40906591-40906610 None:intergenic 40.0%
AAGAAGTCGTTGTAAGTGCA+CGG + chr4_4:40906591-40906610 Msa0681040:CDS 40.0%
TCTATGGGAACGACAAGAAG+AGG - chr4_4:40900711-40900730 None:intergenic 45.0%
ACGAGAGCAACATACCACAA+CGG - chr4_4:40900756-40900775 None:intergenic 45.0%
AATTCCTTCAACAGCGGCAT+CGG - chr4_4:40900861-40900880 None:intergenic 45.0%
GTGGGGATACATGAATGTCT+TGG + chr4_4:40900989-40901008 Msa0681040:intron 45.0%
TCTTCGTGAAGCCATAAGTG+GGG - chr4_4:40901091-40901110 None:intergenic 45.0%
AAGCAACCACACATGTGAGT+TGG - chr4_4:40901276-40901295 None:intergenic 45.0%
AGCATGACACTCATAGGTTC+AGG + chr4_4:40901726-40901745 Msa0681040:intron 45.0%
GCATGACACTCATAGGTTCA+GGG + chr4_4:40901727-40901746 Msa0681040:intron 45.0%
CATGACACTCATAGGTTCAG+GGG + chr4_4:40901728-40901747 Msa0681040:intron 45.0%
GCGAATTATGAGACCGGAAA+TGG - chr4_4:40901998-40902017 None:intergenic 45.0%
GAAACGTTGTCTACGAACAC+GGG - chr4_4:40902050-40902069 None:intergenic 45.0%
GGAAACGTTGTCTACGAACA+CGG - chr4_4:40902051-40902070 None:intergenic 45.0%
GAGATATCGGGACTAAAGAG+AGG - chr4_4:40902154-40902173 None:intergenic 45.0%
AACGTCTGAGAGGGAGATAT+CGG - chr4_4:40902167-40902186 None:intergenic 45.0%
GTGCACAATCTCTTCACTTG+CGG - chr4_4:40902615-40902634 None:intergenic 45.0%
CAAGTGAAGAGATTGTGCAC+AGG + chr4_4:40902615-40902634 Msa0681040:intron 45.0%
AACTCCATCACTATGGTGCT+CGG + chr4_4:40902810-40902829 Msa0681040:intron 45.0%
AATGGACAGTTTGGGCAGAA+AGG + chr4_4:40903054-40903073 Msa0681040:intron 45.0%
CACCCCCAGGATTGAATATT+TGG - chr4_4:40903327-40903346 None:intergenic 45.0%
CAAATATTCAATCCTGGGGG+TGG + chr4_4:40903325-40903344 Msa0681040:intron 45.0%
AATATTCAATCCTGGGGGTG+GGG + chr4_4:40903327-40903346 Msa0681040:intron 45.0%
GCTGTGTCCAAAACATCACA+TGG - chr4_4:40903486-40903505 None:intergenic 45.0%
AAGTGAGGTGAAGATACCAG+AGG + chr4_4:40904086-40904105 Msa0681040:CDS 45.0%
!! TCGCCTAGCTTTTTATCCTC+TGG - chr4_4:40904105-40904124 None:intergenic 45.0%
AGAGGATAAAAAGCTAGGCG+AGG + chr4_4:40904104-40904123 Msa0681040:CDS 45.0%
CATATCTTCTGGTCTGTTGG+GGG + chr4_4:40904283-40904302 Msa0681040:CDS 45.0%
GTCAGTGTCATACAAGTCTC+GGG - chr4_4:40904505-40904524 None:intergenic 45.0%
! TCAAATCTTGGTCTCGGTGT+TGG + chr4_4:40904562-40904581 Msa0681040:intron 45.0%
GTTGAAGTTATCGAACGAGC+AGG + chr4_4:40904864-40904883 Msa0681040:CDS 45.0%
TACTGTCACCAGTTTGGGAA+AGG + chr4_4:40904963-40904982 Msa0681040:CDS 45.0%
TCTGCTTAGTGAAGACCTCA+AGG + chr4_4:40905140-40905159 Msa0681040:CDS 45.0%
ATCCCTTGCAGAAAAGGAGT+TGG + chr4_4:40905194-40905213 Msa0681040:CDS 45.0%
AGACGAGCTTCATCAGCTAA+CGG + chr4_4:40905497-40905516 Msa0681040:CDS 45.0%
GTGCAAAGATCTTGAGCTTC+AGG + chr4_4:40905734-40905753 Msa0681040:CDS 45.0%
! TGATGATGCAAAACTCGAGG+CGG + chr4_4:40905812-40905831 Msa0681040:CDS 45.0%
CGAGGCGGAAAAATTGACTA+AGG + chr4_4:40905827-40905846 Msa0681040:CDS 45.0%
GGTACTTTGCAGCTCTTCTT+CGG - chr4_4:40905886-40905905 None:intergenic 45.0%
! TTCTTTTTGTAGGCCATCGC+GGG - chr4_4:40905937-40905956 None:intergenic 45.0%
AAAGGCTGAAGTCACATCAG+AGG + chr4_4:40905974-40905993 Msa0681040:CDS 45.0%
!! GGAGCAAGTATTGAAGGACA+AGG + chr4_4:40906055-40906074 Msa0681040:CDS 45.0%
TGTTGAAATGGATCTCGAGG+AGG + chr4_4:40906091-40906110 Msa0681040:CDS 45.0%
AGAGAGAGTTTAGAGAGCAG+AGG + chr4_4:40906314-40906333 Msa0681040:CDS 45.0%
GAGAGAGTTTAGAGAGCAGA+GGG + chr4_4:40906315-40906334 Msa0681040:CDS 45.0%
AGAGAGCAGAGGGAAGAAAT+TGG + chr4_4:40906325-40906344 Msa0681040:CDS 45.0%
CAGAGGGAAGAAATTGGAAG+AGG + chr4_4:40906331-40906350 Msa0681040:CDS 45.0%
CTGCCAAGGGTGAAATATTG+CGG + chr4_4:40906363-40906382 Msa0681040:CDS 45.0%
CAACCGCAATATTTCACCCT+TGG - chr4_4:40906369-40906388 None:intergenic 45.0%
ATGGGTATAGAAGCGGAGAG+TGG - chr4_4:40900664-40900683 None:intergenic 50.0%
! GAGCTGCTTGGTGGTTCTAT+GGG - chr4_4:40900726-40900745 None:intergenic 50.0%
AACATACCACAACGGGAGCA+CGG - chr4_4:40900748-40900767 None:intergenic 50.0%
CGAGAGCAACATACCACAAC+GGG - chr4_4:40900755-40900774 None:intergenic 50.0%
GCAGTCCTCACATCACAAAC+CGG - chr4_4:40901068-40901087 None:intergenic 50.0%
CTTCGTGAAGCCATAAGTGG+GGG - chr4_4:40901090-40901109 None:intergenic 50.0%
!! GTGGGCTAGAAGTCTTACGT+TGG + chr4_4:40901192-40901211 Msa0681040:intron 50.0%
TGGTGTCCAACTCACATGTG+TGG + chr4_4:40901267-40901286 Msa0681040:intron 50.0%
GAAAAGGGGATATGCACAGC+TGG - chr4_4:40901606-40901625 None:intergenic 50.0%
TGTCCAATCCACACCAACGT+AGG - chr4_4:40901769-40901788 None:intergenic 50.0%
GACAACGTTTCCCTTCCTCT+CGG + chr4_4:40902059-40902078 Msa0681040:intron 50.0%
ACAACGTTTCCCTTCCTCTC+GGG + chr4_4:40902060-40902079 Msa0681040:intron 50.0%
TACGTCGTCTGCGAATAGAG+CGG - chr4_4:40902108-40902127 None:intergenic 50.0%
ACGTCTGAGAGGGAGATATC+GGG - chr4_4:40902166-40902185 None:intergenic 50.0%
TGACGAGACAACGTCTGAGA+GGG - chr4_4:40902176-40902195 None:intergenic 50.0%
ATGACGAGACAACGTCTGAG+AGG - chr4_4:40902177-40902196 None:intergenic 50.0%
TCTCCGTGTCTGTCTTGTGT+CGG + chr4_4:40902507-40902526 Msa0681040:intron 50.0%
GATCCGACACAAGACAGACA+CGG - chr4_4:40902513-40902532 None:intergenic 50.0%
GGACTTAGCATGCTTCCACT+AGG - chr4_4:40902594-40902613 None:intergenic 50.0%
TCTACCGAGCACCATAGTGA+TGG - chr4_4:40902817-40902836 None:intergenic 50.0%
TACCAGCCATCAGACTACTC+AGG + chr4_4:40903294-40903313 Msa0681040:intron 50.0%
GTGTGACCTGAGTAGTCTGA+TGG - chr4_4:40903303-40903322 None:intergenic 50.0%
CCAATACATGCCGGACACTT+AGG - chr4_4:40904480-40904499 None:intergenic 50.0%
CCTAAGTGTCCGGCATGTAT+TGG + chr4_4:40904477-40904496 Msa0681040:intron 50.0%
AAGAGCAGGTCGTTTCGTTG+AGG + chr4_4:40904830-40904849 Msa0681040:CDS 50.0%
GAAGTTATCGAACGAGCAGG+AGG + chr4_4:40904867-40904886 Msa0681040:CDS 50.0%
GTCTGAAGAGAAGGCCACTT+TGG + chr4_4:40905449-40905468 Msa0681040:CDS 50.0%
! GAAGGCCACTTTGGATGCTA+AGG + chr4_4:40905458-40905477 Msa0681040:CDS 50.0%
ATCTGAGCTCGCCGAAGTTA+AGG + chr4_4:40905770-40905789 Msa0681040:CDS 50.0%
ACTACACTTGAAACCCGCGA+TGG + chr4_4:40905921-40905940 Msa0681040:CDS 50.0%
! AGAGGAATTGGCTTCTGCCA+AGG + chr4_4:40906349-40906368 Msa0681040:CDS 50.0%
! GAGGAATTGGCTTCTGCCAA+GGG + chr4_4:40906350-40906369 Msa0681040:CDS 50.0%
! GGAGCTGCTTGGTGGTTCTA+TGG - chr4_4:40900727-40900746 None:intergenic 55.0%
!! TTCAGGGGTACCTGCATGTC+TGG + chr4_4:40901743-40901762 Msa0681040:intron 55.0%
ATGTCTGGCCTACGTTGGTG+TGG + chr4_4:40901758-40901777 Msa0681040:intron 55.0%
TGGCCTACGTTGGTGTGGAT+TGG + chr4_4:40901763-40901782 Msa0681040:intron 55.0%
GAACAGAGTCCCGAGAGGAA+GGG - chr4_4:40902072-40902091 None:intergenic 55.0%
GACCTGAGTAGTCTGATGGC+TGG - chr4_4:40903299-40903318 None:intergenic 55.0%
TGGACAGGCAGCACCTGAAA+TGG + chr4_4:40904214-40904233 Msa0681040:intron 55.0%
TGACGGTGTGCCTAAGTGTC+CGG + chr4_4:40904467-40904486 Msa0681040:intron 55.0%
TCTCGGGCACCAATACATGC+CGG - chr4_4:40904489-40904508 None:intergenic 55.0%
!! CTCGGTGTTGGTGTCGTGTT+CGG + chr4_4:40904574-40904593 Msa0681040:intron 55.0%
ACTGCCGATGCCGCTGTTGA+AGG + chr4_4:40900854-40900873 Msa0681040:CDS 60.0%
GTGAGGACTGCCCCCACTTA+TGG + chr4_4:40901077-40901096 Msa0681040:intron 60.0%
CCAACGTAGGCCAGACATGC+AGG - chr4_4:40901756-40901775 None:intergenic 60.0%
CCTGCATGTCTGGCCTACGT+TGG + chr4_4:40901753-40901772 Msa0681040:intron 60.0%
CGAACAGAGTCCCGAGAGGA+AGG - chr4_4:40902073-40902092 None:intergenic 60.0%
ACTGCGAACAGAGTCCCGAG+AGG - chr4_4:40902077-40902096 None:intergenic 60.0%
TCTGATGGCTGGTAGCCCGA+CGG - chr4_4:40903288-40903307 None:intergenic 60.0%
TTAACACACTCCCCACCCCC+AGG - chr4_4:40903340-40903359 None:intergenic 60.0%
! AACGGGAGCACGGAGCTGCT+TGG - chr4_4:40900738-40900757 None:intergenic 65.0%
GCTGGTAGCCCGACGGATCT+TGG - chr4_4:40903281-40903300 None:intergenic 65.0%
! GGGAGCACGGAGCTGCTTGG+TGG - chr4_4:40900735-40900754 None:intergenic 70.0%
GCAGCTCCGTGCTCCCGTTG+TGG + chr4_4:40900739-40900758 Msa0681040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 40900620 40906649 40900620 ID=Msa0681040;Name=Msa0681040
chr4_4 mRNA 40900620 40906649 40900620 ID=Msa0681040-mRNA-1;Parent=Msa0681040;Name=Msa0681040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|0.5|0.6|5|0|760
chr4_4 exon 40900620 40900760 40900620 ID=Msa0681040-mRNA-1:exon:9667;Parent=Msa0681040-mRNA-1
chr4_4 exon 40900782 40900893 40900782 ID=Msa0681040-mRNA-1:exon:9668;Parent=Msa0681040-mRNA-1
chr4_4 exon 40904082 40904125 40904082 ID=Msa0681040-mRNA-1:exon:9669;Parent=Msa0681040-mRNA-1
chr4_4 exon 40904221 40904361 40904221 ID=Msa0681040-mRNA-1:exon:9670;Parent=Msa0681040-mRNA-1
chr4_4 exon 40904805 40906649 40904805 ID=Msa0681040-mRNA-1:exon:9671;Parent=Msa0681040-mRNA-1
chr4_4 CDS 40900620 40900760 40900620 ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4 CDS 40900782 40900893 40900782 ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4 CDS 40904082 40904125 40904082 ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4 CDS 40904221 40904361 40904221 ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
chr4_4 CDS 40904805 40906649 40904805 ID=Msa0681040-mRNA-1:cds;Parent=Msa0681040-mRNA-1
Gene Sequence

>Msa0681040

ATGGGTTTTGTTGGAGCAGCGAGTAGCACATCTTCATTGCTCCACTCTCCGCTTCTATACCCATTTCTCTTCCCTTCTTCTTCTTCTTCCTCTTCTTGTCGTTCCCATAGAACCACCAAGCAGCTCCGTGCTCCCGTTGTGCAAGATCCAATATGCAACAAGAGAACGTTTCTGTTAATGGGTGTTGCTGTTCTTCCCTTTCTCAAATTCAACACTGCCGATGCCGCTGTTGAAGGAATTCTTTCATCACCAAAAGAAAGTGAGGTGAAGATACCAGAGGATAAAAAGCTAGGCGAGGCAGCACCTGAAATGGAGAAACCATCTACTTCCTTTGTGTCTCTTCTGAATGGAATTGGAATCATATCTTCTGGTCTGTTGGGGGCTCTTTATGCACTTGCTCAGAAAGAAAAGTCAACTGCTGTTGCAACAATAGAAACAATGAGCAACAAACTGAAGGAAAAAGAAGAGCAGGTCGTTTCGTTGAGGAAGAACTACGAGTTGAAGTTATCGAACGAGCAGGAGGAACAAACCAAACTACTTGGAAAGGCAAAGGAAGAGCAGAAAGCTCTGATTGAACAACTAAATTCTGCAAAGAGTACTGTCACCAGTTTGGGAAAGGAGCTAAAAAGCGAGAAAAGTTTGGTTGCAGAGCTAAAACTTCAAATTGACAGACTTGAAGTCGATCTTACAAAGGCTGATACGGATAAGAAAGATCTTGAAAACAAATTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAACAAAGAATTAATCTGCTTAGTGAAGACCTCAAGGACAAAGAACATGTTGTTCAGAGTCTGAATTCATCCCTTGCAGAAAAGGAGTTGGAATTGAGAAATTTGAACTCTACCTATGACCAAACCAAAGATGAATTATCCAATGCTCATTTTCATATTCAAGGGTTAAAAGATGAAATACTGAAAAGCCAAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTGAGTTCCTTAACTCTTGAGAATAATAACTTAAGAAGTGAATATGATGTATTGGAGAAGGAATTCAATGACCAAAAGTTGAAGTCTGAAGAGAAGGCCACTTTGGATGCTAAGGTTTTGAAAGAAAAAGAAGACGAGCTTCATCAGCTAACGGATAAATTTGAACTCGCCTTAAATGAATCAAGCGAAAACCAGGTTGTCATCGCTGATTTAACCAAAGAACGAGAAGGTTTAAAAGAGTTCCTAGATAATGAATCAAAGAAAGTGAGTAATTTGAAGTATGAACTCCAAGTTACTCAAGAGAATCTTGAAAATTCAAGAAATGACTCTACTGAACTGGAAAAACAGCTAAGTAAGTCAAACAATCTGTGCAAAGATCTTGAGCTTCAGGTCTCTAAGCTTTCATCTGAGCTCGCCGAAGTTAAGGATTCGCTACAGAGTAGACTTGATGATGCAAAACTCGAGGCGGAAAAATTGACTAAGGAGCTGATAACAGTAAAGGAACATTTGAAGAAAGCCGAAGAAGAGCTGCAAAGTACCTCTCATGAACTAACGACTACACTTGAAACCCGCGATGGCCTACAAAAAGAATTAATTGAGATCTACAAAAAGGCTGAAGTCACATCAGAGGTTTTGAAGGAAGAAAAGAAGCTAGCTGCTTCTTTGAACAACGATTTACAGGCTTTGAAGGAGCAAGTATTGAAGGACAAGGAGTCACGAAGAACTGTTGAAATGGATCTCGAGGAGGCTACCAAATCACTAGATGAAATGAACCGAAATTCGGTGATCCTTTCTAGTGAATTAGAAGAGGCTAAATCACTTATTTCTAGCCTTGAAAATGAGAAAGAGGTTCTTGCCAAGTACCTTACAGAACAAAGAAATGCAAGCAAAGAGGCCCAAGAAAACATTGAAGATGCTCATAACCTCATTACTAGACTTGGCAAAGAGAGAGAGAGTTTAGAGAGCAGAGGGAAGAAATTGGAAGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGAAGTCAGATCAATTCTTCAAAATCAAAAGTTGTTAAAAATGAGCAGCAAGTACAGAAAAGTGAAGCTGAAACCAATTCTTCAAAATCAAAAGTAGTTAACAATGAGCAGCAAGTACAAGAAAATGCAGCTGAAACCAATTCTTCAAAATCAAAAGTTGTTAACAATGAGCAGCAGGTACAGAAAAATGAAGCCGAAACCAAAGAAGTCGTTGTAAGTGCACGGAAGAATGTTCGAAGAAGAAAGACTAATCCTTCATAA

Protein sequence

>Msa0681040

MGFVGAASSTSSLLHSPLLYPFLFPSSSSSSSCRSHRTTKQLRAPVVQDPICNKRTFLLMGVAVLPFLKFNTADAAVEGILSSPKESEVKIPEDKKLGEAAPEMEKPSTSFVSLLNGIGIISSGLLGALYALAQKEKSTAVATIETMSNKLKEKEEQVVSLRKNYELKLSNEQEEQTKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLVAELKLQIDRLEVDLTKADTDKKDLENKLKEKVDSIEILQQRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNSTYDQTKDELSNAHFHIQGLKDEILKSQEELEGKDSLVMELNSRVSSLTLENNNLRSEYDVLEKEFNDQKLKSEEKATLDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREGLKEFLDNESKKVSNLKYELQVTQENLENSRNDSTELEKQLSKSNNLCKDLELQVSKLSSELAEVKDSLQSRLDDAKLEAEKLTKELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKELIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTVEMDLEEATKSLDEMNRNSVILSSELEEAKSLISSLENEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKERESLESRGKKLEEELASAKGEILRLRSQINSSKSKVVKNEQQVQKSEAETNSSKSKVVNNEQQVQENAAETNSSKSKVVNNEQQVQKNEAETKEVVVSARKNVRRRKTNPS*