AlfalfaGEDB | Msa0545910

M. sativa cultivar zhongmu-4 / Msa0545910

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009295 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016363 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0034357 GO:0034399 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070013 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545910	KEH29889.1	93.787	676	30	1	2	665	34	709	0.0	1194

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545910	sp\|Q9M7J4\|MFP1_TOBAC	48.211	587	291	2	27	601	112	697	4.74e-155	468

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545910	A0A072UJJ1	93.787	676	30	1	2	665	34	709	0.0	1194

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0545910	0.854549	1.143406e-61	-8.615850e-47
Msa0003370	Msa0545910	0.836416	9.478786e-57	-8.615850e-47
Msa0007160	Msa0545910	0.835637	1.494419e-56	-8.615850e-47
Msa0012460	Msa0545910	0.803926	2.760246e-49	-8.615850e-47
Msa0017060	Msa0545910	0.838309	3.105405e-57	-8.615850e-47
Msa0017120	Msa0545910	0.800550	1.367280e-48	-8.615850e-47
Msa0018870	Msa0545910	0.821258	4.443564e-53	-8.615850e-47
Msa0021710	Msa0545910	0.800839	1.193665e-48	-8.615850e-47
Msa0025340	Msa0545910	0.802422	5.653268e-49	-8.615850e-47
Msa0026120	Msa0545910	0.821617	3.671295e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545910	MtrunA17_Chr4g0026951	93.778	675	30	1	3	665	94	768	0.0	1190

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545910	AT3G16000.1	45.470	574	301	1	27	588	124	697	8.23e-128	395

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Find 92 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAAGAGGAACTAGA+AGG	0.496547	4_1:+36883262	Msa0545910:CDS
AAAGAGTACTGTCACCAGTT+TGG	0.379797	4_1:+36882910	Msa0545910:CDS
AAAGGCTGAAGTCACATCAG+AGG	0.661801	4_1:+36883927	Msa0545910:CDS
AAAGTTGAAGTCTGAAGAGA+AGG	0.558645	4_1:+36883393	Msa0545910:CDS
AAATGAATCAAGCGAAAACC+AGG	0.577858	4_1:+36883492	Msa0545910:CDS
AACTGTTGAAATGGATCTCG+AGG	0.549243	4_1:+36884041	Msa0545910:CDS
AAGAAATGACTCTACTGAAC+TGG	0.411333	4_1:+36883636	Msa0545910:CDS
AAGAAGTCGTTGTAAGTGCA+CGG	0.605490	4_1:+36884544	Msa0545910:CDS
AAGAAGTGAATATGATGTAT+TGG	0.464888	4_1:+36883351	Msa0545910:CDS
AAGAGCAGGTCGTTTCGTTG+AGG	0.574604	4_1:+36882783	Msa0545910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAAGAAGAATACTCAG+AGG	-	chr4_1:36881612-36881631	None:intergenic	30.0%
TCTTCAAGGATGTAAATAAC+TGG	+	chr4_1:36881687-36881706	Msa0545910:intron	30.0%
CAATAACAAAGTAGCAAATC+AGG	-	chr4_1:36881764-36881783	None:intergenic	30.0%
AGCTCCATTAATATGTCAAA+AGG	+	chr4_1:36881813-36881832	Msa0545910:intron	30.0%
TGTATATGCATGCATTGTTT+CGG	+	chr4_1:36881875-36881894	Msa0545910:intron	30.0%
ATCCAAAGGACAAAAACAAT+AGG	-	chr4_1:36882118-36882137	None:intergenic	30.0%
TAGAATACGTAAACATCCAA+AGG	-	chr4_1:36882132-36882151	None:intergenic	30.0%
TTGCAACAATAGAAACAGTA+AGG	+	chr4_1:36882297-36882316	Msa0545910:intron	30.0%
AATTTCTCAAATCTTGGTCT+CGG	+	chr4_1:36882508-36882527	Msa0545910:intron	30.0%
TATAGTTTAAAGAGGAAGTG+AGG	+	chr4_1:36882591-36882610	Msa0545910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	36881598	36884602	36881598	ID=Msa0545910;Name=Msa0545910
chr4_1	mRNA	36881598	36884602	36881598	ID=Msa0545910-mRNA-1;Parent=Msa0545910;Name=Msa0545910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.5\|0\|0.8\|0.25\|0.4\|5\|0\|665
chr4_1	exon	36881598	36881601	36881598	ID=Msa0545910-mRNA-1:exon:9336;Parent=Msa0545910-mRNA-1
chr4_1	exon	36882035	36882078	36882035	ID=Msa0545910-mRNA-1:exon:9337;Parent=Msa0545910-mRNA-1
chr4_1	exon	36882174	36882246	36882174	ID=Msa0545910-mRNA-1:exon:9338;Parent=Msa0545910-mRNA-1
chr4_1	exon	36882282	36882313	36882282	ID=Msa0545910-mRNA-1:exon:9339;Parent=Msa0545910-mRNA-1
chr4_1	exon	36882758	36884602	36882758	ID=Msa0545910-mRNA-1:exon:9340;Parent=Msa0545910-mRNA-1
chr4_1	CDS	36881598	36881601	36881598	ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1	CDS	36882035	36882078	36882035	ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1	CDS	36882174	36882246	36882174	ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1	CDS	36882282	36882313	36882282	ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1	CDS	36882758	36884602	36882758	ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1

Gene Sequence

>Msa0545910

ATGGAAGAAAGTGAGGTGAAGATACCAGAGGATAAAAAGCTAGGCGAGGCAGCACCTGAAATGGAGAAACCATCTACTTCCTTTGTGTCTCTTCTGAATGGAATTGGAATCATATCTTCTGAAAAGTCGACTGCTGTTGCAACAATAGAAACAATGAGCAACAAACTGAAGGAAAAAGAAGAGCAGGTCGTTTCGTTGAGGAAGAACTACGAGTTGAAGTTATCGAACGAGCAGGAGGAACAAACCAAACTACTTGGAAAGGCAAAGGAAGAGCAGAAAGCTCTGATTGAACAACTAAATTCTGCAAAGAGTACTGTCACCAGTTTGGGAAAGGAGCTAAAAAGCGAGAAAAGTTTGGTTGCAGAGCTAAAACTTCAAATTGACAGACTTGAAGTCGATCTTACAAAGGCTGATACGGATAAGAAAGATCTTGAAAACAAATTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAACAAAGAATTAATCTGCTTAGTGAAGACCTCAAGGACAAAGAACATGTTGTTCAGAGTCTGAATTCATCCCTTGCAGAAAAGGAGTTGGAATTGAGAAATTTGAACTCTACCTATGACCAAACCAAAGATGAATTATCCAATGCTCATTTTCATATTCAAGGGTTAAAAGATGAAATACTGAAAAGCCAAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTGAGTTCCTTAACTCTTGAGAATAATAACTTAAGAAGTGAATATGATGTATTGGAGAAGGAATTCAATGACCAAAAGTTGAAGTCTGAAGAGAAGGCCACTTTGGATGCTAAGGTTTTGAAAGAAAAAGAAGACGAGCTTCATCAGCTAACGGATAAATTTGAACTCGCCTTAAATGAATCAAGCGAAAACCAGGTTGTCATCGCTGATTTAACCAAAGAACGAGAAGGTTTAAAAGAGTTCCTAGATAATGAATCAAAGAAAGTGAGTAATTTGAAGTATGAACTCCAAGTTACTCAAGAGAATCTTGAAAATTCAAGAAATGACTCTACTGAACTGGAAAAACAGCTAAGTAAGTCAAACAATCTGTGCAAAGATCTTGAGCTTCAGGTCTCTAAGCTTTCATCTGAGCTCGCCGAAGTTAAGGATTCGCTACAGAGTAGACTTGATGATGCAAAACTCGAGGCGGAAAAATTGACTAAGGAGCTGATAACAGTAAAGGAACATTTGAAGAAAGCCGAAGAAGAGCTGCAAAGTACCTCTCATGAACTAACGACTACACTTGAAACCCGCGATGGCCTACAAAAAGAATTAATTGAGATCTACAAAAAGGCTGAAGTCACATCAGAGGTTTTGAAGGAAGAAAAGAAGCTAGCTGCTTCTTTGAACAACGATTTACAGGCTTTGAAGGAGCAAGTATTGAAGGACAAGGAGTCACGAAGAACTGTTGAAATGGATCTCGAGGAGGCTACCAAATCACTAGATGAAATGAACCGAAATTCGGTGATCCTTTCTAGTGAATTAGAAGAGGCTAAATCACTTATTTCTAGCCTTAAAAATGAGAAAGAGGTTCTTGCCAAGTACCTTACAGAACAAAGAAATGCAAGCAAAGAGGCCCAAGAAAACATTGAAGATGCTCATAACCTCATTACTAGACTTGGCAAAGAGAGAGAGAGTTTAGAGAGCAGAGGGAAGAAATTGGAAGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGAAGTCAGATCAATTCTTCAAAATCAAAAGTTGTTAAAAATGAGCAGCAAGTACAGAAAAGTGAAGCTGAAACCAATTCTTCAAAATCAAAAGTAGTTAACAATGAGCAGCAAGTACAAGAAAATGCAGCTGAAACCAATTCTTCAAAATCAAAAGTTGTTAACAATGAGCAGCAGGTACAGAAAAATGAAGCCGAAACCAAAGAAGTCGTTGTAAGTGCACGGAAGAATGTTCGAAGAAGAAAGACTAATCCTTCATAA

Protein sequence

>Msa0545910

MEESEVKIPEDKKLGEAAPEMEKPSTSFVSLLNGIGIISSEKSTAVATIETMSNKLKEKEEQVVSLRKNYELKLSNEQEEQTKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLVAELKLQIDRLEVDLTKADTDKKDLENKLKEKVDSIEILQQRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNSTYDQTKDELSNAHFHIQGLKDEILKSQEELEGKDSLVMELNSRVSSLTLENNNLRSEYDVLEKEFNDQKLKSEEKATLDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREGLKEFLDNESKKVSNLKYELQVTQENLENSRNDSTELEKQLSKSNNLCKDLELQVSKLSSELAEVKDSLQSRLDDAKLEAEKLTKELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKELIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTVEMDLEEATKSLDEMNRNSVILSSELEEAKSLISSLKNEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKERESLESRGKKLEEELASAKGEILRLRSQINSSKSKVVKNEQQVQKSEAETNSSKSKVVNNEQQVQENAAETNSSKSKVVNNEQQVQKNEAETKEVVVSARKNVRRRKTNPS*