AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545910 MtrunA17_Chr4g0026951 93.778 675 30 1 3 665 94 768 0.0 1190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545910 AT3G16000.1 45.470 574 301 1 27 588 124 697 8.23e-128 395

Find 92 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGATGGTTTCTCCATTTC+AGG 0.199946 4_1:-36882180 None:intergenic
TTCTTTGAACAACGATTTAC+AGG 0.220730 4_1:+36883978 Msa0545910:CDS
AGAGAGCAGAGGGAAGAAAT+TGG 0.259658 4_1:+36884278 Msa0545910:CDS
AGCATTGGATAATTCATCTT+TGG 0.295929 4_1:-36883203 None:intergenic
CTTTGCCTTTCCAAGTAGTT+TGG 0.309873 4_1:-36882849 None:intergenic
GTGCAAAGATCTTGAGCTTC+AGG 0.312959 4_1:+36883687 Msa0545910:CDS
TCTCTTCAGACTTCAACTTT+TGG 0.316670 4_1:-36883390 None:intergenic
TGCACTTACAACGACTTCTT+TGG 0.317800 4_1:-36884541 None:intergenic
TACAACGACTTCTTTGGTTT+CGG 0.328405 4_1:-36884535 None:intergenic
TTGCATTTCTTTGTTCTGTA+AGG 0.330684 4_1:-36884182 None:intergenic
CTTTCTTTGATTCATTATCT+AGG 0.341810 4_1:-36883561 None:intergenic
ATTAATTGAGATCTACAAAA+AGG 0.357996 4_1:+36883909 Msa0545910:CDS
AAGAGTACTGTCACCAGTTT+GGG 0.358487 4_1:+36882911 Msa0545910:CDS
GAAGAAATTGGAAGAGGAAT+TGG 0.359838 4_1:+36884290 Msa0545910:CDS
TAGAAAGGATCACCGAATTT+CGG 0.364977 4_1:-36884092 None:intergenic
GTTATTATTCTCAAGAGTTA+AGG 0.365187 4_1:-36883326 None:intergenic
ATCTGAGCTCGCCGAAGTTA+AGG 0.367535 4_1:+36883723 Msa0545910:CDS
TGGATAATTCATCTTTGGTT+TGG 0.368506 4_1:-36883198 None:intergenic
GTGTCTCTTCTGAATGGAAT+TGG 0.373150 4_1:+36882210 Msa0545910:CDS
CAAGATTCTCTTGAGTAACT+TGG 0.375297 4_1:-36883606 None:intergenic
TCCTTTGTGTCTCTTCTGAA+TGG 0.376856 4_1:+36882204 Msa0545910:CDS
TTCATCTTTGGTTTGGTCAT+AGG 0.377065 4_1:-36883191 None:intergenic
AAAGAGTACTGTCACCAGTT+TGG 0.379797 4_1:+36882910 Msa0545910:CDS
GTTCATTTCATCTAGTGATT+TGG 0.384110 4_1:-36884070 None:intergenic
CAACGATTTACAGGCTTTGA+AGG 0.401530 4_1:+36883987 Msa0545910:CDS
GAATTCATCCCTTGCAGAAA+AGG 0.404773 4_1:+36883141 Msa0545910:CDS
AAGAAATGACTCTACTGAAC+TGG 0.411333 4_1:+36883636 Msa0545910:CDS
TGGACAGGCAGCACCTGAAA+TGG 0.426569 4_1:+36882167 Msa0545910:intron
AGATGAAATGAACCGAAATT+CGG 0.435411 4_1:+36884080 Msa0545910:CDS
GGTACTTTGCAGCTCTTCTT+CGG 0.439223 4_1:-36883836 None:intergenic
TCTTTGTTCTGTAAGGTACT+TGG 0.441168 4_1:-36884175 None:intergenic
GTCTGAAGAGAAGGCCACTT+TGG 0.441380 4_1:+36883402 Msa0545910:CDS
GGAATTGGAATCATATCTTC+TGG 0.443046 4_1:+36882225 Msa0545910:CDS
GTCACGAAGAACTGTTGAAA+TGG 0.446236 4_1:+36884032 Msa0545910:CDS
AAGAAGTGAATATGATGTAT+TGG 0.464888 4_1:+36883351 Msa0545910:CDS
CCTCTTCTAATTCACTAGAA+AGG 0.465124 4_1:-36884107 None:intergenic
CAACATGTTCTTTGTCCTTG+AGG 0.467033 4_1:-36883108 None:intergenic
CAACCGCAATATTTCACCCT+TGG 0.468447 4_1:-36884319 None:intergenic
CGATCTTACAAAGGCTGATA+CGG 0.477419 4_1:+36883000 Msa0545910:CDS
AGAGACACAAAGGAAGTAGA+TGG 0.480663 4_1:-36882195 None:intergenic
GAAGGCCACTTTGGATGCTA+AGG 0.485310 4_1:+36883411 Msa0545910:CDS
TGAAAACAAATTGAAAGAAA+AGG 0.486501 4_1:+36883036 Msa0545910:CDS
TTTGAAGGAGCAAGTATTGA+AGG 0.492700 4_1:+36884002 Msa0545910:CDS
GAGAGAGTTTAGAGAGCAGA+GGG 0.494703 4_1:+36884268 Msa0545910:CDS
AAAAGCCAAGAGGAACTAGA+AGG 0.496547 4_1:+36883262 Msa0545910:CDS
CATAACCTCATTACTAGACT+TGG 0.503381 4_1:+36884237 Msa0545910:CDS
ATCCCTTGCAGAAAAGGAGT+TGG 0.505112 4_1:+36883147 Msa0545910:CDS
ACTAGAAGGAAAAGATTCCT+TGG 0.509288 4_1:+36883276 Msa0545910:CDS
TTGAATATGAAAATGAGCAT+TGG 0.513802 4_1:-36883218 None:intergenic
AGGAAAAGATTCCTTGGTGA+TGG 0.515184 4_1:+36883282 Msa0545910:CDS
GAGGAACAAACCAAACTACT+TGG 0.517707 4_1:+36882839 Msa0545910:CDS
CTTTGCCAAGTCTAGTAATG+AGG 0.519176 4_1:-36884242 None:intergenic
CAGAGGGAAGAAATTGGAAG+AGG 0.524169 4_1:+36884284 Msa0545910:CDS
AGTTGTTAACAATGAGCAGC+AGG 0.529237 4_1:+36884497 Msa0545910:CDS
TGAATATGATGTATTGGAGA+AGG 0.538059 4_1:+36883357 Msa0545910:CDS
TACTGTCACCAGTTTGGGAA+AGG 0.541631 4_1:+36882916 Msa0545910:CDS
AGAGGAATTGGCTTCTGCCA+AGG 0.547273 4_1:+36884302 Msa0545910:CDS
AACTGTTGAAATGGATCTCG+AGG 0.549243 4_1:+36884041 Msa0545910:CDS
AGAGAGAGTTTAGAGAGCAG+AGG 0.552368 4_1:+36884267 Msa0545910:CDS
AAAGTTGAAGTCTGAAGAGA+AGG 0.558645 4_1:+36883393 Msa0545910:CDS
CCTTTCTAGTGAATTAGAAG+AGG 0.560312 4_1:+36884107 Msa0545910:CDS
AAGAGCAGGTCGTTTCGTTG+AGG 0.574604 4_1:+36882783 Msa0545910:CDS
GAGGAATTGGCTTCTGCCAA+GGG 0.577429 4_1:+36884303 Msa0545910:CDS
AAATGAATCAAGCGAAAACC+AGG 0.577858 4_1:+36883492 Msa0545910:CDS
CTGCCAAGGGTGAAATATTG+CGG 0.583288 4_1:+36884316 Msa0545910:CDS
TAAGGAGCTGATAACAGTAA+AGG 0.584606 4_1:+36883798 Msa0545910:CDS
GTTGAAGTTATCGAACGAGC+AGG 0.586669 4_1:+36882817 Msa0545910:CDS
TCTGCTTAGTGAAGACCTCA+AGG 0.589218 4_1:+36883093 Msa0545910:CDS
TTAAATCAGCGATGACAACC+TGG 0.590178 4_1:-36883510 None:intergenic
ACAAACCAAACTACTTGGAA+AGG 0.594982 4_1:+36882844 Msa0545910:CDS
ACAAAGAAATGCAAGCAAAG+AGG 0.598046 4_1:+36884191 Msa0545910:CDS
AAGAAGTCGTTGTAAGTGCA+CGG 0.605490 4_1:+36884544 Msa0545910:CDS
GATTTAACCAAAGAACGAGA+AGG 0.619090 4_1:+36883526 Msa0545910:CDS
CTGTAGCGAATCCTTAACTT+CGG 0.622154 4_1:-36883734 None:intergenic
TGAATTTAGTTCCATCACCA+AGG 0.625407 4_1:-36883293 None:intergenic
TCCATTCAGAAGAGACACAA+AGG 0.626993 4_1:-36882205 None:intergenic
CAAACTACTTGGAAAGGCAA+AGG 0.627372 4_1:+36882850 Msa0545910:CDS
AGACGAGCTTCATCAGCTAA+CGG 0.631119 4_1:+36883450 Msa0545910:CDS
ACAGATGAGCAACAAACTGA+AGG 0.633690 4_1:+36882754 Msa0545910:intron
TGTAGTCGTTAGTTCATGAG+AGG 0.649860 4_1:-36883857 None:intergenic
CAAAACCTTAGCATCCAAAG+TGG 0.651075 4_1:-36883416 None:intergenic
GAAGTTATCGAACGAGCAGG+AGG 0.659936 4_1:+36882820 Msa0545910:CDS
TCTCCTTACAGAAGAAAGTG+AGG 0.661466 4_1:+36882024 Msa0545910:intron
AAAGGCTGAAGTCACATCAG+AGG 0.661801 4_1:+36883927 Msa0545910:CDS
ACTACACTTGAAACCCGCGA+TGG 0.675763 4_1:+36883874 Msa0545910:CDS
TGATGATGCAAAACTCGAGG+CGG 0.676692 4_1:+36883765 Msa0545910:CDS
ACTTGATGATGCAAAACTCG+AGG 0.683771 4_1:+36883762 Msa0545910:CDS
GGAGCAAGTATTGAAGGACA+AGG 0.687727 4_1:+36884008 Msa0545910:CDS
AAGTGAGGTGAAGATACCAG+AGG 0.692163 4_1:+36882039 Msa0545910:CDS
ACTTGAAGTCGATCTTACAA+AGG 0.692206 4_1:+36882991 Msa0545910:CDS
TGAAATACTGAAAAGCCAAG+AGG 0.694568 4_1:+36883252 Msa0545910:CDS
TGTTGAAATGGATCTCGAGG+AGG 0.699159 4_1:+36884044 Msa0545910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATGGTTAATTTTTAA+AGG + chr4_1:36882681-36882700 Msa0545910:intron 10.0%
!!! TTTGATAGTTAATTAACTAA+AGG - chr4_1:36881724-36881743 None:intergenic 15.0%
!!! TCTATCTAGTTTTTTTAAAA+TGG + chr4_1:36882667-36882686 Msa0545910:intron 15.0%
!! TCTAGAAATAGAATATTATG+AGG + chr4_1:36881645-36881664 Msa0545910:intron 20.0%
!!! ACTTTCATTTATTTTCTTCA+AGG + chr4_1:36881673-36881692 Msa0545910:intron 20.0%
!! AGTAAAGTTATAGTTTAAAG+AGG + chr4_1:36882583-36882602 Msa0545910:intron 20.0%
!! TGAAAACAAATTGAAAGAAA+AGG + chr4_1:36883036-36883055 Msa0545910:CDS 20.0%
!!! TCTCAATTAATTCTTTTTGT+AGG - chr4_1:36883900-36883919 None:intergenic 20.0%
!! ATTAATTGAGATCTACAAAA+AGG + chr4_1:36883909-36883928 Msa0545910:CDS 20.0%
!!! TACTTTTGATTTTGAAGAAT+TGG - chr4_1:36884418-36884437 None:intergenic 20.0%
!!! AACTTTTGATTTTGAAGAAT+TGG - chr4_1:36884355-36884374 None:intergenic 20.0%
!!! TATTTCTAGATACGAATAGA+AGG - chr4_1:36881635-36881654 None:intergenic 25.0%
!! ATCTCCTTTTGACATATTAA+TGG - chr4_1:36881820-36881839 None:intergenic 25.0%
! TGATTCAAGAAAGGATAATT+TGG - chr4_1:36881845-36881864 None:intergenic 25.0%
! AATGCATGCATATACATATA+CGG - chr4_1:36881871-36881890 None:intergenic 25.0%
! TAGTTCACATCACAAAATTA+AGG - chr4_1:36881928-36881947 None:intergenic 25.0%
! TTCTAAACTTATTGCTTCTA+TGG + chr4_1:36882147-36882166 Msa0545910:intron 25.0%
!! CTTTTCAATTTCTCAAATCT+TGG + chr4_1:36882502-36882521 Msa0545910:intron 25.0%
!! ATGTGTTAGTCATATTTTAC+TGG + chr4_1:36882722-36882741 Msa0545910:intron 25.0%
! TTGAATATGAAAATGAGCAT+TGG - chr4_1:36883221-36883240 None:intergenic 25.0%
!! AATGCTCATTTTCATATTCA+AGG + chr4_1:36883220-36883239 Msa0545910:CDS 25.0%
!! ATGCTCATTTTCATATTCAA+GGG + chr4_1:36883221-36883240 Msa0545910:CDS 25.0%
! GTTATTATTCTCAAGAGTTA+AGG - chr4_1:36883329-36883348 None:intergenic 25.0%
! AAGAAGTGAATATGATGTAT+TGG + chr4_1:36883351-36883370 Msa0545910:CDS 25.0%
! CTTTCTTTGATTCATTATCT+AGG - chr4_1:36883564-36883583 None:intergenic 25.0%
AAGAAAAGAAGAATACTCAG+AGG - chr4_1:36881612-36881631 None:intergenic 30.0%
TCTTCAAGGATGTAAATAAC+TGG + chr4_1:36881687-36881706 Msa0545910:intron 30.0%
CAATAACAAAGTAGCAAATC+AGG - chr4_1:36881764-36881783 None:intergenic 30.0%
AGCTCCATTAATATGTCAAA+AGG + chr4_1:36881813-36881832 Msa0545910:intron 30.0%
TGTATATGCATGCATTGTTT+CGG + chr4_1:36881875-36881894 Msa0545910:intron 30.0%
ATCCAAAGGACAAAAACAAT+AGG - chr4_1:36882118-36882137 None:intergenic 30.0%
TAGAATACGTAAACATCCAA+AGG - chr4_1:36882132-36882151 None:intergenic 30.0%
TTGCAACAATAGAAACAGTA+AGG + chr4_1:36882297-36882316 Msa0545910:intron 30.0%
AATTTCTCAAATCTTGGTCT+CGG + chr4_1:36882508-36882527 Msa0545910:intron 30.0%
TATAGTTTAAAGAGGAAGTG+AGG + chr4_1:36882591-36882610 Msa0545910:intron 30.0%
ATAGTTTAAAGAGGAAGTGA+GGG + chr4_1:36882592-36882611 Msa0545910:intron 30.0%
! TCCTCTAGAAACATCAAAAA+GGG - chr4_1:36882627-36882646 None:intergenic 30.0%
! TTCCTCTAGAAACATCAAAA+AGG - chr4_1:36882628-36882647 None:intergenic 30.0%
TGGATAATTCATCTTTGGTT+TGG - chr4_1:36883201-36883220 None:intergenic 30.0%
! AGCATTGGATAATTCATCTT+TGG - chr4_1:36883206-36883225 None:intergenic 30.0%
TGAATATGATGTATTGGAGA+AGG + chr4_1:36883357-36883376 Msa0545910:CDS 30.0%
! GTTTTCGCTTGATTCATTTA+AGG - chr4_1:36883491-36883510 None:intergenic 30.0%
! TTTTAAACCTTCTCGTTCTT+TGG - chr4_1:36883536-36883555 None:intergenic 30.0%
TTCTTTGAACAACGATTTAC+AGG + chr4_1:36883978-36883997 Msa0545910:CDS 30.0%
GTTCATTTCATCTAGTGATT+TGG - chr4_1:36884073-36884092 None:intergenic 30.0%
AGATGAAATGAACCGAAATT+CGG + chr4_1:36884080-36884099 Msa0545910:CDS 30.0%
! TAGCCTTAAAAATGAGAAAG+AGG + chr4_1:36884146-36884165 Msa0545910:CDS 30.0%
!! GAACCTCTTTCTCATTTTTA+AGG - chr4_1:36884152-36884171 None:intergenic 30.0%
TTGCATTTCTTTGTTCTGTA+AGG - chr4_1:36884185-36884204 None:intergenic 30.0%
! AGCATCTTCAATGTTTTCTT+GGG - chr4_1:36884217-36884236 None:intergenic 30.0%
ACAAAGTAGCAAATCAGGAA+GGG - chr4_1:36881759-36881778 None:intergenic 35.0%
AACAAAGTAGCAAATCAGGA+AGG - chr4_1:36881760-36881779 None:intergenic 35.0%
ATACGGTCATGATTCAAGAA+AGG - chr4_1:36881854-36881873 None:intergenic 35.0%
ACATCACAAAATTAAGGACG+TGG - chr4_1:36881922-36881941 None:intergenic 35.0%
! CTGTTTAGTGAAGTATCACT+TGG + chr4_1:36881968-36881987 Msa0545910:intron 35.0%
ACTTTCTTCTGTAAGGAGAA+TGG - chr4_1:36882023-36882042 None:intergenic 35.0%
ATACCAGAGGATAAAAAGCT+AGG + chr4_1:36882052-36882071 Msa0545910:CDS 35.0%
!!! TGCCTATTGTTTTTGTCCTT+TGG + chr4_1:36882113-36882132 Msa0545910:intron 35.0%
AACTTATTGCTTCTATGGAC+AGG + chr4_1:36882152-36882171 Msa0545910:intron 35.0%
GGAATTGGAATCATATCTTC+TGG + chr4_1:36882225-36882244 Msa0545910:CDS 35.0%
AATCATATCTTCTGGTCTGT+TGG + chr4_1:36882233-36882252 Msa0545910:intron 35.0%
ATCATATCTTCTGGTCTGTT+GGG + chr4_1:36882234-36882253 Msa0545910:intron 35.0%
GAAAACCAGTAAGACATGTA+TGG + chr4_1:36882346-36882365 Msa0545910:intron 35.0%
GCACAAACATTTCAGATTGA+CGG + chr4_1:36882402-36882421 Msa0545910:intron 35.0%
!!! TCCCTTTTTGATGTTTCTAG+AGG + chr4_1:36882623-36882642 Msa0545910:intron 35.0%
ACAAACCAAACTACTTGGAA+AGG + chr4_1:36882844-36882863 Msa0545910:CDS 35.0%
GCTAAAAAGCGAGAAAAGTT+TGG + chr4_1:36882940-36882959 Msa0545910:CDS 35.0%
ACTTGAAGTCGATCTTACAA+AGG + chr4_1:36882991-36883010 Msa0545910:CDS 35.0%
!! TTCATCTTTGGTTTGGTCAT+AGG - chr4_1:36883194-36883213 None:intergenic 35.0%
TGAAATACTGAAAAGCCAAG+AGG + chr4_1:36883252-36883271 Msa0545910:CDS 35.0%
ACTAGAAGGAAAAGATTCCT+TGG + chr4_1:36883276-36883295 Msa0545910:CDS 35.0%
! TGAATTTAGTTCCATCACCA+AGG - chr4_1:36883296-36883315 None:intergenic 35.0%
! TCTCTTCAGACTTCAACTTT+TGG - chr4_1:36883393-36883412 None:intergenic 35.0%
AAAGTTGAAGTCTGAAGAGA+AGG + chr4_1:36883393-36883412 Msa0545910:CDS 35.0%
AAATGAATCAAGCGAAAACC+AGG + chr4_1:36883492-36883511 Msa0545910:CDS 35.0%
GATTTAACCAAAGAACGAGA+AGG + chr4_1:36883526-36883545 Msa0545910:CDS 35.0%
CAAGATTCTCTTGAGTAACT+TGG - chr4_1:36883609-36883628 None:intergenic 35.0%
AAGAAATGACTCTACTGAAC+TGG + chr4_1:36883636-36883655 Msa0545910:CDS 35.0%
TAAGGAGCTGATAACAGTAA+AGG + chr4_1:36883798-36883817 Msa0545910:CDS 35.0%
!! TTTGAAGGAGCAAGTATTGA+AGG + chr4_1:36884002-36884021 Msa0545910:CDS 35.0%
TAGAAAGGATCACCGAATTT+CGG - chr4_1:36884095-36884114 None:intergenic 35.0%
CCTCTTCTAATTCACTAGAA+AGG - chr4_1:36884110-36884129 None:intergenic 35.0%
! CCTTTCTAGTGAATTAGAAG+AGG + chr4_1:36884107-36884126 Msa0545910:CDS 35.0%
! TCTTTGTTCTGTAAGGTACT+TGG - chr4_1:36884178-36884197 None:intergenic 35.0%
ACAAAGAAATGCAAGCAAAG+AGG + chr4_1:36884191-36884210 Msa0545910:CDS 35.0%
! GAGCATCTTCAATGTTTTCT+TGG - chr4_1:36884218-36884237 None:intergenic 35.0%
CATAACCTCATTACTAGACT+TGG + chr4_1:36884237-36884256 Msa0545910:CDS 35.0%
GAAGAAATTGGAAGAGGAAT+TGG + chr4_1:36884290-36884309 Msa0545910:CDS 35.0%
! TACAACGACTTCTTTGGTTT+CGG - chr4_1:36884538-36884557 None:intergenic 35.0%
GGACACAACTAACAAAGCAA+GGG - chr4_1:36881901-36881920 None:intergenic 40.0%
TGGACACAACTAACAAAGCA+AGG - chr4_1:36881902-36881921 None:intergenic 40.0%
TCTCCTTACAGAAGAAAGTG+AGG + chr4_1:36882024-36882043 Msa0545910:intron 40.0%
TCACCTCACTTTCTTCTGTA+AGG - chr4_1:36882030-36882049 None:intergenic 40.0%
GTAGATGGTTTCTCCATTTC+AGG - chr4_1:36882183-36882202 None:intergenic 40.0%
AGAGACACAAAGGAAGTAGA+TGG - chr4_1:36882198-36882217 None:intergenic 40.0%
TCCTTTGTGTCTCTTCTGAA+TGG + chr4_1:36882204-36882223 Msa0545910:CDS 40.0%
TCCATTCAGAAGAGACACAA+AGG - chr4_1:36882208-36882227 None:intergenic 40.0%
GTGTCTCTTCTGAATGGAAT+TGG + chr4_1:36882210-36882229 Msa0545910:CDS 40.0%
TCATATCTTCTGGTCTGTTG+GGG + chr4_1:36882235-36882254 Msa0545910:intron 40.0%
AAAGGCCATACATGTCTTAC+TGG - chr4_1:36882354-36882373 None:intergenic 40.0%
TAAGACATGTATGGCCTTTG+AGG + chr4_1:36882355-36882374 Msa0545910:intron 40.0%
AGAAGAGAGACATTCCTCAA+AGG - chr4_1:36882372-36882391 None:intergenic 40.0%
TGTCAGTGTCATACAAGTCT+CGG - chr4_1:36882458-36882477 None:intergenic 40.0%
ACAGATGAGCAACAAACTGA+AGG + chr4_1:36882754-36882773 Msa0545910:intron 40.0%
ACTGAAGGAAAAAGAAGAGC+AGG + chr4_1:36882769-36882788 Msa0545910:CDS 40.0%
GAGGAACAAACCAAACTACT+TGG + chr4_1:36882839-36882858 Msa0545910:CDS 40.0%
CTTTGCCTTTCCAAGTAGTT+TGG - chr4_1:36882852-36882871 None:intergenic 40.0%
CAAACTACTTGGAAAGGCAA+AGG + chr4_1:36882850-36882869 Msa0545910:CDS 40.0%
!! AAAGAGTACTGTCACCAGTT+TGG + chr4_1:36882910-36882929 Msa0545910:CDS 40.0%
!! AAGAGTACTGTCACCAGTTT+GGG + chr4_1:36882911-36882930 Msa0545910:CDS 40.0%
!!! TTTTAGCTCCTTTCCCAAAC+TGG - chr4_1:36882927-36882946 None:intergenic 40.0%
CGATCTTACAAAGGCTGATA+CGG + chr4_1:36883000-36883019 Msa0545910:CDS 40.0%
CAACATGTTCTTTGTCCTTG+AGG - chr4_1:36883111-36883130 None:intergenic 40.0%
GAATTCATCCCTTGCAGAAA+AGG + chr4_1:36883141-36883160 Msa0545910:CDS 40.0%
! TTCCAACTCCTTTTCTGCAA+GGG - chr4_1:36883152-36883171 None:intergenic 40.0%
! ATTCCAACTCCTTTTCTGCA+AGG - chr4_1:36883153-36883172 None:intergenic 40.0%
AAAAGCCAAGAGGAACTAGA+AGG + chr4_1:36883262-36883281 Msa0545910:CDS 40.0%
!!! CTTTTCCTTCTAGTTCCTCT+TGG - chr4_1:36883270-36883289 None:intergenic 40.0%
AGGAAAAGATTCCTTGGTGA+TGG + chr4_1:36883282-36883301 Msa0545910:CDS 40.0%
CAAAACCTTAGCATCCAAAG+TGG - chr4_1:36883419-36883438 None:intergenic 40.0%
TTAAATCAGCGATGACAACC+TGG - chr4_1:36883513-36883532 None:intergenic 40.0%
CTGTAGCGAATCCTTAACTT+CGG - chr4_1:36883737-36883756 None:intergenic 40.0%
!! ACTTGATGATGCAAAACTCG+AGG + chr4_1:36883762-36883781 Msa0545910:CDS 40.0%
TGTAGTCGTTAGTTCATGAG+AGG - chr4_1:36883860-36883879 None:intergenic 40.0%
! ATTCTTTTTGTAGGCCATCG+CGG - chr4_1:36883891-36883910 None:intergenic 40.0%
!! AGTCACATCAGAGGTTTTGA+AGG + chr4_1:36883936-36883955 Msa0545910:CDS 40.0%
! CAACGATTTACAGGCTTTGA+AGG + chr4_1:36883987-36884006 Msa0545910:CDS 40.0%
GTCACGAAGAACTGTTGAAA+TGG + chr4_1:36884032-36884051 Msa0545910:CDS 40.0%
AACTGTTGAAATGGATCTCG+AGG + chr4_1:36884041-36884060 Msa0545910:CDS 40.0%
CTTTGCCAAGTCTAGTAATG+AGG - chr4_1:36884245-36884264 None:intergenic 40.0%
AGTTGTTAACAATGAGCAGC+AGG + chr4_1:36884497-36884516 Msa0545910:CDS 40.0%
TGCACTTACAACGACTTCTT+TGG - chr4_1:36884544-36884563 None:intergenic 40.0%
AAGAAGTCGTTGTAAGTGCA+CGG + chr4_1:36884544-36884563 Msa0545910:CDS 40.0%
AAGTGAGGTGAAGATACCAG+AGG + chr4_1:36882039-36882058 Msa0545910:CDS 45.0%
!! TCGCCTAGCTTTTTATCCTC+TGG - chr4_1:36882058-36882077 None:intergenic 45.0%
AGAGGATAAAAAGCTAGGCG+AGG + chr4_1:36882057-36882076 Msa0545910:CDS 45.0%
GTCAGTGTCATACAAGTCTC+GGG - chr4_1:36882457-36882476 None:intergenic 45.0%
! TCAAATCTTGGTCTCGGTGT+TGG + chr4_1:36882514-36882533 Msa0545910:intron 45.0%
GTTGAAGTTATCGAACGAGC+AGG + chr4_1:36882817-36882836 Msa0545910:CDS 45.0%
TACTGTCACCAGTTTGGGAA+AGG + chr4_1:36882916-36882935 Msa0545910:CDS 45.0%
TCTGCTTAGTGAAGACCTCA+AGG + chr4_1:36883093-36883112 Msa0545910:CDS 45.0%
ATCCCTTGCAGAAAAGGAGT+TGG + chr4_1:36883147-36883166 Msa0545910:CDS 45.0%
AGACGAGCTTCATCAGCTAA+CGG + chr4_1:36883450-36883469 Msa0545910:CDS 45.0%
GTGCAAAGATCTTGAGCTTC+AGG + chr4_1:36883687-36883706 Msa0545910:CDS 45.0%
! TGATGATGCAAAACTCGAGG+CGG + chr4_1:36883765-36883784 Msa0545910:CDS 45.0%
CGAGGCGGAAAAATTGACTA+AGG + chr4_1:36883780-36883799 Msa0545910:CDS 45.0%
GGTACTTTGCAGCTCTTCTT+CGG - chr4_1:36883839-36883858 None:intergenic 45.0%
! TTCTTTTTGTAGGCCATCGC+GGG - chr4_1:36883890-36883909 None:intergenic 45.0%
AAAGGCTGAAGTCACATCAG+AGG + chr4_1:36883927-36883946 Msa0545910:CDS 45.0%
!! GGAGCAAGTATTGAAGGACA+AGG + chr4_1:36884008-36884027 Msa0545910:CDS 45.0%
TGTTGAAATGGATCTCGAGG+AGG + chr4_1:36884044-36884063 Msa0545910:CDS 45.0%
AGAGAGAGTTTAGAGAGCAG+AGG + chr4_1:36884267-36884286 Msa0545910:CDS 45.0%
GAGAGAGTTTAGAGAGCAGA+GGG + chr4_1:36884268-36884287 Msa0545910:CDS 45.0%
AGAGAGCAGAGGGAAGAAAT+TGG + chr4_1:36884278-36884297 Msa0545910:CDS 45.0%
CAGAGGGAAGAAATTGGAAG+AGG + chr4_1:36884284-36884303 Msa0545910:CDS 45.0%
CTGCCAAGGGTGAAATATTG+CGG + chr4_1:36884316-36884335 Msa0545910:CDS 45.0%
CAACCGCAATATTTCACCCT+TGG - chr4_1:36884322-36884341 None:intergenic 45.0%
AAGAGCAGGTCGTTTCGTTG+AGG + chr4_1:36882783-36882802 Msa0545910:CDS 50.0%
GAAGTTATCGAACGAGCAGG+AGG + chr4_1:36882820-36882839 Msa0545910:CDS 50.0%
GTCTGAAGAGAAGGCCACTT+TGG + chr4_1:36883402-36883421 Msa0545910:CDS 50.0%
! GAAGGCCACTTTGGATGCTA+AGG + chr4_1:36883411-36883430 Msa0545910:CDS 50.0%
ATCTGAGCTCGCCGAAGTTA+AGG + chr4_1:36883723-36883742 Msa0545910:CDS 50.0%
ACTACACTTGAAACCCGCGA+TGG + chr4_1:36883874-36883893 Msa0545910:CDS 50.0%
! AGAGGAATTGGCTTCTGCCA+AGG + chr4_1:36884302-36884321 Msa0545910:CDS 50.0%
! GAGGAATTGGCTTCTGCCAA+GGG + chr4_1:36884303-36884322 Msa0545910:CDS 50.0%
TGGACAGGCAGCACCTGAAA+TGG + chr4_1:36882167-36882186 Msa0545910:intron 55.0%
CCAATACATGCCGGACACTC+AGG - chr4_1:36882432-36882451 None:intergenic 55.0%
CCTGAGTGTCCGGCATGTAT+TGG + chr4_1:36882429-36882448 Msa0545910:intron 55.0%
TCTCGGGCACCAATACATGC+CGG - chr4_1:36882441-36882460 None:intergenic 55.0%
!! CTCGGTGTTGGTGTCGTGTT+CGG + chr4_1:36882526-36882545 Msa0545910:intron 55.0%
TGACGGTGTGCCTGAGTGTC+CGG + chr4_1:36882419-36882438 Msa0545910:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 36881598 36884602 36881598 ID=Msa0545910;Name=Msa0545910
chr4_1 mRNA 36881598 36884602 36881598 ID=Msa0545910-mRNA-1;Parent=Msa0545910;Name=Msa0545910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0|0.8|0.25|0.4|5|0|665
chr4_1 exon 36881598 36881601 36881598 ID=Msa0545910-mRNA-1:exon:9336;Parent=Msa0545910-mRNA-1
chr4_1 exon 36882035 36882078 36882035 ID=Msa0545910-mRNA-1:exon:9337;Parent=Msa0545910-mRNA-1
chr4_1 exon 36882174 36882246 36882174 ID=Msa0545910-mRNA-1:exon:9338;Parent=Msa0545910-mRNA-1
chr4_1 exon 36882282 36882313 36882282 ID=Msa0545910-mRNA-1:exon:9339;Parent=Msa0545910-mRNA-1
chr4_1 exon 36882758 36884602 36882758 ID=Msa0545910-mRNA-1:exon:9340;Parent=Msa0545910-mRNA-1
chr4_1 CDS 36881598 36881601 36881598 ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1 CDS 36882035 36882078 36882035 ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1 CDS 36882174 36882246 36882174 ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1 CDS 36882282 36882313 36882282 ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
chr4_1 CDS 36882758 36884602 36882758 ID=Msa0545910-mRNA-1:cds;Parent=Msa0545910-mRNA-1
Gene Sequence

>Msa0545910

ATGGAAGAAAGTGAGGTGAAGATACCAGAGGATAAAAAGCTAGGCGAGGCAGCACCTGAAATGGAGAAACCATCTACTTCCTTTGTGTCTCTTCTGAATGGAATTGGAATCATATCTTCTGAAAAGTCGACTGCTGTTGCAACAATAGAAACAATGAGCAACAAACTGAAGGAAAAAGAAGAGCAGGTCGTTTCGTTGAGGAAGAACTACGAGTTGAAGTTATCGAACGAGCAGGAGGAACAAACCAAACTACTTGGAAAGGCAAAGGAAGAGCAGAAAGCTCTGATTGAACAACTAAATTCTGCAAAGAGTACTGTCACCAGTTTGGGAAAGGAGCTAAAAAGCGAGAAAAGTTTGGTTGCAGAGCTAAAACTTCAAATTGACAGACTTGAAGTCGATCTTACAAAGGCTGATACGGATAAGAAAGATCTTGAAAACAAATTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAACAAAGAATTAATCTGCTTAGTGAAGACCTCAAGGACAAAGAACATGTTGTTCAGAGTCTGAATTCATCCCTTGCAGAAAAGGAGTTGGAATTGAGAAATTTGAACTCTACCTATGACCAAACCAAAGATGAATTATCCAATGCTCATTTTCATATTCAAGGGTTAAAAGATGAAATACTGAAAAGCCAAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTGAGTTCCTTAACTCTTGAGAATAATAACTTAAGAAGTGAATATGATGTATTGGAGAAGGAATTCAATGACCAAAAGTTGAAGTCTGAAGAGAAGGCCACTTTGGATGCTAAGGTTTTGAAAGAAAAAGAAGACGAGCTTCATCAGCTAACGGATAAATTTGAACTCGCCTTAAATGAATCAAGCGAAAACCAGGTTGTCATCGCTGATTTAACCAAAGAACGAGAAGGTTTAAAAGAGTTCCTAGATAATGAATCAAAGAAAGTGAGTAATTTGAAGTATGAACTCCAAGTTACTCAAGAGAATCTTGAAAATTCAAGAAATGACTCTACTGAACTGGAAAAACAGCTAAGTAAGTCAAACAATCTGTGCAAAGATCTTGAGCTTCAGGTCTCTAAGCTTTCATCTGAGCTCGCCGAAGTTAAGGATTCGCTACAGAGTAGACTTGATGATGCAAAACTCGAGGCGGAAAAATTGACTAAGGAGCTGATAACAGTAAAGGAACATTTGAAGAAAGCCGAAGAAGAGCTGCAAAGTACCTCTCATGAACTAACGACTACACTTGAAACCCGCGATGGCCTACAAAAAGAATTAATTGAGATCTACAAAAAGGCTGAAGTCACATCAGAGGTTTTGAAGGAAGAAAAGAAGCTAGCTGCTTCTTTGAACAACGATTTACAGGCTTTGAAGGAGCAAGTATTGAAGGACAAGGAGTCACGAAGAACTGTTGAAATGGATCTCGAGGAGGCTACCAAATCACTAGATGAAATGAACCGAAATTCGGTGATCCTTTCTAGTGAATTAGAAGAGGCTAAATCACTTATTTCTAGCCTTAAAAATGAGAAAGAGGTTCTTGCCAAGTACCTTACAGAACAAAGAAATGCAAGCAAAGAGGCCCAAGAAAACATTGAAGATGCTCATAACCTCATTACTAGACTTGGCAAAGAGAGAGAGAGTTTAGAGAGCAGAGGGAAGAAATTGGAAGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGAAGTCAGATCAATTCTTCAAAATCAAAAGTTGTTAAAAATGAGCAGCAAGTACAGAAAAGTGAAGCTGAAACCAATTCTTCAAAATCAAAAGTAGTTAACAATGAGCAGCAAGTACAAGAAAATGCAGCTGAAACCAATTCTTCAAAATCAAAAGTTGTTAACAATGAGCAGCAGGTACAGAAAAATGAAGCCGAAACCAAAGAAGTCGTTGTAAGTGCACGGAAGAATGTTCGAAGAAGAAAGACTAATCCTTCATAA

Protein sequence

>Msa0545910

MEESEVKIPEDKKLGEAAPEMEKPSTSFVSLLNGIGIISSEKSTAVATIETMSNKLKEKEEQVVSLRKNYELKLSNEQEEQTKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLVAELKLQIDRLEVDLTKADTDKKDLENKLKEKVDSIEILQQRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNSTYDQTKDELSNAHFHIQGLKDEILKSQEELEGKDSLVMELNSRVSSLTLENNNLRSEYDVLEKEFNDQKLKSEEKATLDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREGLKEFLDNESKKVSNLKYELQVTQENLENSRNDSTELEKQLSKSNNLCKDLELQVSKLSSELAEVKDSLQSRLDDAKLEAEKLTKELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKELIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTVEMDLEEATKSLDEMNRNSVILSSELEEAKSLISSLKNEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKERESLESRGKKLEEELASAKGEILRLRSQINSSKSKVVKNEQQVQKSEAETNSSKSKVVNNEQQVQENAAETNSSKSKVVNNEQQVQKNEAETKEVVVSARKNVRRRKTNPS*