AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051430 MtrunA17_Chr1g0154011 100.000 148 0 0 1 148 1 148 1.22e-109 307
Msa0051430 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 4.04e-103 291
Msa0051430 MtrunA17_Chr3g0108261 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0051430 MtrunA17_Chr5g0432831 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0051430 MtrunA17_Chr8g0369311 90.541 148 14 0 1 148 57 204 9.57e-101 287
Msa0051430 MtrunA17_Chr4g0037011 88.514 148 17 0 1 148 1 148 5.46e-100 283
Msa0051430 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 1.48e-55 171
Msa0051430 MtrunA17_Chr2g0316201 48.252 143 74 0 4 146 8 150 9.30e-47 149
Msa0051430 MtrunA17_Chr2g0316211 47.887 142 74 0 5 146 9 150 1.13e-45 146
Msa0051430 MtrunA17_Chr8g0362321 46.575 146 73 1 2 142 5 150 1.92e-45 145
Msa0051430 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 1.08e-44 143
Msa0051430 MtrunA17_Chr3g0131871 49.306 144 71 2 5 146 6 149 6.49e-42 137
Msa0051430 MtrunA17_Chr1g0199951 44.776 134 72 2 3 135 43 175 3.06e-34 118
Msa0051430 MtrunA17_Chr3g0139901 40.816 147 83 3 5 147 7 153 3.16e-34 117
Msa0051430 MtrunA17_Chr4g0038891 42.969 128 73 0 4 131 35 162 3.61e-33 115
Msa0051430 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 1.48e-31 110
Msa0051430 MtrunA17_Chr4g0053191 38.158 152 87 2 1 145 4 155 9.06e-31 108
Msa0051430 MtrunA17_Chr5g0401831 34.868 152 92 2 1 145 4 155 1.46e-27 100
Msa0051430 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 3.29e-27 100
Msa0051430 MtrunA17_Chr4g0031181 34.815 135 74 2 15 135 18 152 1.54e-26 97.8
Msa0051430 MtrunA17_Chr8g0348701 34.959 123 78 2 26 146 25 147 3.25e-25 95.1
Msa0051430 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 3.46e-25 97.1
Msa0051430 MtrunA17_Chr8g0387131 38.182 110 66 2 39 146 38 147 2.68e-24 92.4
Msa0051430 MtrunA17_Chr2g0328001 33.333 144 82 2 15 144 18 161 4.99e-24 91.7
Msa0051430 MtrunA17_Chr4g0059291 33.333 123 80 2 26 146 25 147 1.98e-23 90.5
Msa0051430 MtrunA17_Chr8g0372391 40.777 103 59 2 1 102 15 116 1.70e-19 79.7
Msa0051430 MtrunA17_Chr4g0068301 34.188 117 71 3 2 114 11 125 1.23e-17 77.4
Msa0051430 MtrunA17_Chr5g0404931 37.864 103 62 2 1 102 15 116 1.99e-17 74.3
Msa0051430 MtrunA17_Chr8g0376111 36.066 122 68 3 4 115 43 164 5.46e-17 75.9
Msa0051430 MtrunA17_Chr8g0345331 34.188 117 68 3 4 115 8 120 3.95e-16 72.4
Msa0051430 MtrunA17_Chr7g0233631 36.066 122 68 3 4 115 38 159 4.33e-16 73.6
Msa0051430 MtrunA17_Chr7g0233611 36.066 122 68 3 4 115 38 159 9.45e-16 72.4
Msa0051430 MtrunA17_Chr7g0222941 30.081 123 76 3 3 115 90 212 3.67e-14 67.4
Msa0051430 MtrunA17_Chr4g0047301 28.667 150 94 4 4 143 672 818 3.23e-13 65.9
Msa0051430 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.84e-13 65.1
Msa0051430 MtrunA17_Chr2g0282211 27.815 151 96 4 3 143 681 828 7.99e-13 64.7
Msa0051430 MtrunA17_Chr1g0186291 29.293 99 56 2 43 140 30 115 1.41e-12 61.2
Msa0051430 MtrunA17_Chr8g0376201 29.787 141 88 4 3 133 192 331 6.91e-12 62.0
Msa0051430 MtrunA17_Chr2g0317631 29.268 123 77 3 3 115 306 428 8.49e-12 61.6
Msa0051430 MtrunA17_Chr1g0198021 27.642 123 79 3 3 115 137 259 2.23e-11 60.5
Msa0051430 MtrunA17_Chr1g0211131 32.609 92 52 3 34 115 853 944 6.01e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051430 AT1G64230.2 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa0051430 AT1G64230.1 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa0051430 AT5G53300.2 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0051430 AT5G53300.4 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0051430 AT5G53300.1 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0051430 AT5G41700.5 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0051430 AT5G41700.2 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0051430 AT5G41700.1 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0051430 AT4G27960.1 91.216 148 13 0 1 148 1 148 3.33e-102 289
Msa0051430 AT4G27960.2 91.216 148 13 0 1 148 31 178 1.39e-101 288
Msa0051430 AT3G08690.2 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa0051430 AT3G08690.1 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa0051430 AT5G56150.1 88.514 148 17 0 1 148 1 148 5.36e-100 283
Msa0051430 AT5G41700.4 89.933 149 14 1 1 148 1 149 1.05e-99 283
Msa0051430 AT1G64230.3 85.350 157 14 1 1 148 1 157 2.21e-98 280
Msa0051430 AT2G16740.1 85.714 147 21 0 1 147 1 147 9.44e-97 275
Msa0051430 AT1G64230.5 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa0051430 AT1G64230.4 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa0051430 AT3G08700.2 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa0051430 AT3G08700.1 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa0051430 AT5G41700.3 91.346 104 9 0 1 104 1 104 7.72e-70 207
Msa0051430 AT5G53300.3 88.991 109 10 1 1 107 1 109 6.15e-69 204
Msa0051430 AT5G56150.2 89.320 103 11 0 1 103 1 103 9.41e-68 201
Msa0051430 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.66e-53 167
Msa0051430 AT1G16890.2 48.951 143 73 0 4 146 8 150 2.41e-47 150
Msa0051430 AT5G62540.1 51.880 133 64 0 2 134 5 137 9.41e-47 149
Msa0051430 AT1G78870.2 48.252 143 74 0 4 146 8 150 1.86e-46 148
Msa0051430 AT1G14400.1 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa0051430 AT1G14400.2 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa0051430 AT1G36340.2 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa0051430 AT1G36340.1 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa0051430 AT2G02760.1 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051430 AT2G02760.2 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051430 AT2G02760.4 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051430 AT2G02760.3 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0051430 AT1G16890.3 46.711 152 72 1 4 146 8 159 1.42e-44 144
Msa0051430 AT3G13550.2 50.877 114 56 0 2 115 37 150 9.52e-43 139
Msa0051430 AT1G16890.1 52.174 115 55 0 32 146 3 117 8.86e-41 133
Msa0051430 AT1G78870.4 52.174 115 55 0 32 146 3 117 1.28e-40 132
Msa0051430 AT5G50870.1 46.528 144 75 2 5 146 6 149 6.01e-39 130
Msa0051430 AT1G78870.1 51.724 116 55 1 32 146 3 118 8.58e-39 128
Msa0051430 AT5G50870.2 43.226 155 75 3 5 146 6 160 1.61e-35 122
Msa0051430 AT3G24515.1 43.312 157 76 3 3 146 8 164 5.11e-35 125
Msa0051430 AT2G32790.1 47.333 150 70 4 2 146 30 175 1.36e-34 119
Msa0051430 AT5G25760.1 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa0051430 AT5G25760.2 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa0051430 AT3G24515.3 37.912 182 75 4 3 146 8 189 3.00e-32 119
Msa0051430 AT1G78870.3 46.667 105 56 0 4 108 8 112 4.20e-31 108
Msa0051430 AT3G57870.1 38.816 152 86 3 1 145 5 156 1.46e-30 108
Msa0051430 AT3G20060.1 41.406 128 75 0 4 131 39 166 2.51e-30 108
Msa0051430 AT1G50490.1 42.188 128 74 0 4 131 38 165 6.62e-30 107
Msa0051430 AT3G20060.2 42.017 119 67 1 13 131 5 121 1.11e-28 102
Msa0051430 AT2G46030.5 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa0051430 AT2G46030.1 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa0051430 AT2G46030.4 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa0051430 AT2G46030.2 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa0051430 AT2G46030.3 36.486 148 91 3 1 146 73 219 2.12e-27 102
Msa0051430 AT5G05080.2 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051430 AT5G05080.3 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051430 AT5G05080.1 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051430 AT5G05080.4 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0051430 AT4G36800.2 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa0051430 AT4G36800.1 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa0051430 AT3G55380.1 36.296 135 72 2 15 135 19 153 8.44e-27 99.0
Msa0051430 AT1G63800.2 40.000 110 64 2 39 146 23 132 4.10e-25 94.7
Msa0051430 AT1G63800.1 40.000 110 64 2 39 146 38 147 4.43e-25 95.1
Msa0051430 AT5G41340.1 35.772 123 77 2 26 146 25 147 4.65e-25 95.1
Msa0051430 AT5G59300.1 34.028 144 81 2 15 144 18 161 1.48e-24 93.2
Msa0051430 AT3G46460.1 33.333 144 82 2 15 144 18 161 2.34e-24 92.8
Msa0051430 AT2G18600.1 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa0051430 AT2G18600.2 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa0051430 AT5G41340.2 38.462 104 62 2 45 146 9 112 2.30e-22 87.0
Msa0051430 AT3G17000.1 36.752 117 68 3 2 114 12 126 1.45e-19 83.2
Msa0051430 AT3G55380.2 28.402 169 73 3 15 135 19 187 2.36e-19 80.5
Msa0051430 AT1G75440.1 39.815 108 59 3 1 107 15 117 2.60e-18 77.0
Msa0051430 AT1G45050.1 38.835 103 61 2 1 102 15 116 9.46e-18 75.5
Msa0051430 AT5G42990.1 39.806 103 60 2 1 102 15 116 1.22e-17 75.1
Msa0051430 AT1G17280.9 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.7 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.6 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.2 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.5 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.3 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.1 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT1G17280.8 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0051430 AT4G36410.1 37.037 108 62 3 1 107 15 117 5.73e-17 73.6
Msa0051430 AT5G50430.1 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa0051430 AT5G50430.2 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa0051430 AT3G46460.3 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa0051430 AT3G46460.2 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa0051430 AT1G17280.4 32.520 123 68 3 4 115 8 126 8.83e-16 72.0

Find 71 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACCTTTGGTGGCTTAAA+TGG 0.184645 1_2:-5524149 None:intergenic
AACCTTGGAGATGGAATCTT+AGG 0.258527 1_2:-5521613 None:intergenic
CTCCCATTGCTGTTGATGTT+AGG 0.317472 1_2:-5524940 None:intergenic
ATAAAACTTGGTTGTTGGTT+TGG 0.323051 1_2:-5525801 None:intergenic
GCGTCATTGTTCTATTATAT+AGG 0.361002 1_2:+5525858 Msa0051430:three_prime_UTR
TAAAACTTGGTTGTTGGTTT+GGG 0.363426 1_2:-5525800 None:intergenic
TTGTACATGTGGGCAATATC+AGG 0.375872 1_2:-5525547 None:intergenic
TCAGGCACCAAAGGATCATC+TGG 0.377413 1_2:-5525529 None:intergenic
CCTCCTGTGTCTTGCAGTGC+TGG 0.380892 1_2:+5523020 Msa0051430:CDS
GGTGGCTTAAATGGATAATC+TGG 0.389530 1_2:-5524140 None:intergenic
TGATTTGAACATATAGATAA+TGG 0.409991 1_2:-5525947 None:intergenic
GTCGGATAAAACTTGGTTGT+TGG 0.415903 1_2:-5525806 None:intergenic
AAGTTCTGTTAGCGAGAGAA+AGG 0.423440 1_2:-5521585 None:intergenic
TGAAACAGGTCTTCACCAAC+AGG 0.427366 1_2:-5524041 None:intergenic
TCCCATTGCTGTTGATGTTA+GGG 0.427658 1_2:-5524939 None:intergenic
TAGTAGCTTGCCAATGAAAC+AGG 0.428793 1_2:-5524055 None:intergenic
ACATATAGATAATGGTATAT+AGG 0.430215 1_2:-5525939 None:intergenic
TACTAGATAGTTACCTTTGG+TGG 0.430453 1_2:-5524158 None:intergenic
TGATATAGTGATTAATATAG+TGG 0.434916 1_2:-5525884 None:intergenic
TCCAAACCCAGATGATCCTT+TGG 0.446078 1_2:+5525522 Msa0051430:CDS
ATTCCACTACATAAATTAAA+CGG 0.446686 1_2:+5525836 Msa0051430:three_prime_UTR
ATAAATGCTTGTGGTTCTAA+AGG 0.456889 1_2:+5525635 Msa0051430:three_prime_UTR
GGTATATAGGTTATGTAGTA+AGG 0.460900 1_2:-5525926 None:intergenic
ATGAGACTACTGCCCGGTCT+TGG 0.466598 1_2:+5525587 Msa0051430:CDS
ACCAAAGGATCATCTGGGTT+TGG 0.469354 1_2:-5525523 None:intergenic
TTGGTGAAGACCTGTTTCAT+TGG 0.470566 1_2:+5524045 Msa0051430:CDS
TCACTTAGTCGGATAAAACT+TGG 0.471898 1_2:-5525813 None:intergenic
ACGCATTACTAAGGAGTTGA+AGG 0.472891 1_2:+5522983 Msa0051430:CDS
ACCCTAACATCAACAGCAAT+GGG 0.488484 1_2:+5524938 Msa0051430:CDS
TCATTGGCAAGCTACTATCA+TGG 0.489308 1_2:+5524061 Msa0051430:CDS
CATATTTCTGAGTCCAAGAC+CGG 0.489374 1_2:-5525600 None:intergenic
CCGGGCAGTAGTCTCATACT+TGG 0.490655 1_2:-5525581 None:intergenic
GGCCTCAAAACGCATTACTA+AGG 0.503308 1_2:+5522974 Msa0051430:CDS
TTCATTAGGTTGAACTGCAA+TGG 0.505699 1_2:+5522953 Msa0051430:intron
ACGCCGTTTAATTTATGTAG+TGG 0.509779 1_2:-5525839 None:intergenic
TGTAGTGGAATTCACTTAGT+CGG 0.514363 1_2:-5525824 None:intergenic
AGGAATACACCACCAGCATA+AGG 0.516668 1_2:-5524098 None:intergenic
TATACTCATGCAGGCCCTGT+TGG 0.522486 1_2:+5524026 Msa0051430:intron
CTTTGTCAGTCTTGTACATG+TGG 0.533650 1_2:-5525558 None:intergenic
ACATGGTAGAAACTCGACTT+AGG 0.539690 1_2:-5525970 None:intergenic
TCCTGCTCTTACTGTTTCGA+AGG 0.541092 1_2:+5524996 Msa0051430:CDS
ATCGAAGCAAACCTTGGAGA+TGG 0.543129 1_2:-5521622 None:intergenic
CACCCTAACATCAACAGCAA+TGG 0.544450 1_2:+5524937 Msa0051430:CDS
CATTGGCAAGCTACTATCAT+GGG 0.548045 1_2:+5524062 Msa0051430:CDS
GCAGAGAGCAAATTGACAGC+AGG 0.555230 1_2:-5525492 None:intergenic
GCAAGCTACTATCATGGGAC+CGG 0.562370 1_2:+5524067 Msa0051430:CDS
ACCTTGGAGATGGAATCTTA+GGG 0.563827 1_2:-5521612 None:intergenic
ACCCTAAGATTCCATCTCCA+AGG 0.564855 1_2:+5521611 Msa0051430:five_prime_UTR
AGTTCTGTTAGCGAGAGAAA+GGG 0.567493 1_2:-5521584 None:intergenic
GGCTTAAATGGATAATCTGG+TGG 0.570933 1_2:-5524137 None:intergenic
ACCTTCGAAACAGTAAGAGC+AGG 0.586563 1_2:-5524997 None:intergenic
CCGGCAGACAGTCCTTATGC+TGG 0.594140 1_2:+5524086 Msa0051430:CDS
AAAGGGAGCGATGCGTTGTG+AGG 0.599804 1_2:-5521567 None:intergenic
GTGGGAAGTGAATGGTCACT+AGG 0.600222 1_2:-5524118 None:intergenic
CCAGCATAAGGACTGTCTGC+CGG 0.604386 1_2:-5524086 None:intergenic
CATTGCTGTTGATGTTAGGG+TGG 0.612271 1_2:-5524936 None:intergenic
TGGGCAATATCAGGCACCAA+AGG 0.612823 1_2:-5525538 None:intergenic
TTATCCATTTAAGCCACCAA+AGG 0.622832 1_2:+5524145 Msa0051430:CDS
GCAGACAGTCCTTATGCTGG+TGG 0.624021 1_2:+5524089 Msa0051430:CDS
ATAATCTGGTGGGAAGTGAA+TGG 0.636084 1_2:-5524126 None:intergenic
GCTTAAATGGATAATCTGGT+GGG 0.637843 1_2:-5524136 None:intergenic
CAGGCACCAAAGGATCATCT+GGG 0.640642 1_2:-5525528 None:intergenic
TTGACATTCTGAAAGAGCAG+TGG 0.642055 1_2:+5524971 Msa0051430:CDS
CCAAGTATGAGACTACTGCC+CGG 0.645693 1_2:+5525581 Msa0051430:CDS
TGAACTAGCATAAATGCTTG+TGG 0.646131 1_2:+5525626 Msa0051430:exon
TTTGTCAGTCTTGTACATGT+GGG 0.652799 1_2:-5525557 None:intergenic
ATACCAGCACTGCAAGACAC+AGG 0.653347 1_2:-5523023 None:intergenic
CCAGCACTGCAAGACACAGG+AGG 0.655706 1_2:-5523020 None:intergenic
ATATTTCTGAGTCCAAGACC+GGG 0.658098 1_2:-5525599 None:intergenic
CAGCACTGCAAGACACAGGA+GGG 0.671340 1_2:-5523019 None:intergenic
GAAACAGGTCTTCACCAACA+GGG 0.724000 1_2:-5524040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTGTTATAGAAA+TGG + chr1_2:5522116-5522135 Msa0051430:intron 10.0%
!! GTTTAAAGAAATATTATATT+TGG + chr1_2:5522330-5522349 Msa0051430:intron 10.0%
!!! GATATTTTATAATATGATTA+CGG + chr1_2:5522373-5522392 Msa0051430:intron 10.0%
!!! ATATTTTATAATATGATTAC+GGG + chr1_2:5522374-5522393 Msa0051430:intron 10.0%
!! AAAATTAAAAACTATTTGAT+GGG + chr1_2:5523668-5523687 Msa0051430:intron 10.0%
!!! AAAATTTTGAAAAGGATTTT+AGG + chr1_2:5521852-5521871 Msa0051430:intron 15.0%
!!! AAATTTTGAAAAGGATTTTA+GGG + chr1_2:5521853-5521872 Msa0051430:intron 15.0%
!! TTATATTTCGTTATAATTGT+GGG + chr1_2:5522593-5522612 Msa0051430:intron 15.0%
!! TTCACTTTAAATTAAGTAAA+TGG - chr1_2:5522750-5522769 None:intergenic 15.0%
!!! CATCAAATAGTTTTTAATTT+TGG - chr1_2:5523669-5523688 None:intergenic 15.0%
!! CAAAATTAAAAACTATTTGA+TGG + chr1_2:5523667-5523686 Msa0051430:intron 15.0%
!! TATAATATATAAAGATAACG+AGG - chr1_2:5524010-5524029 None:intergenic 15.0%
!! ATCTATACAACAAATATTAA+AGG - chr1_2:5524714-5524733 None:intergenic 15.0%
!!! TGTTTTGAAAATAATGTTTT+TGG + chr1_2:5524851-5524870 Msa0051430:intron 15.0%
!!! TATTTCATTTTCTATACTTT+TGG + chr1_2:5525233-5525252 Msa0051430:intron 15.0%
!!! TTTTGGTGAAAATTTTGAAA+AGG + chr1_2:5521844-5521863 Msa0051430:intron 20.0%
!! ATATAACATGTAACTTAAGT+CGG - chr1_2:5522579-5522598 None:intergenic 20.0%
!! GTTATATTTCGTTATAATTG+TGG + chr1_2:5522592-5522611 Msa0051430:intron 20.0%
!! GAATTGAGTTATAAATAACA+TGG + chr1_2:5522767-5522786 Msa0051430:intron 20.0%
!! AGTTATAAATAACATGGAAT+GGG + chr1_2:5522773-5522792 Msa0051430:intron 20.0%
!! AACAGAATTAAGTTTATTAC+AGG - chr1_2:5522827-5522846 None:intergenic 20.0%
!!! AACTTAATTCTGTTTTGAAA+TGG + chr1_2:5522833-5522852 Msa0051430:intron 20.0%
!! TTTGTCTTAAATTGTTCATT+AGG + chr1_2:5522939-5522958 Msa0051430:intron 20.0%
!!! TAAGAACATGTTAACTTTTT+TGG - chr1_2:5523130-5523149 None:intergenic 20.0%
!! AAAAAGTTAACATGTTCTTA+TGG + chr1_2:5523130-5523149 Msa0051430:intron 20.0%
!! ATGATTCAACAAAGAAAATA+TGG - chr1_2:5523197-5523216 None:intergenic 20.0%
!! TTTATATATTATACTCATGC+AGG + chr1_2:5524017-5524036 Msa0051430:intron 20.0%
!!! ATATAATCATCTAAGATTCT+TGG + chr1_2:5524221-5524240 Msa0051430:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG + chr1_2:5524355-5524374 Msa0051430:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG + chr1_2:5524356-5524375 Msa0051430:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG + chr1_2:5524355-5524374 Msa0051430:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG + chr1_2:5524356-5524375 Msa0051430:intron 20.0%
!!! TTTAATTGTTCTTGTTTATC+TGG + chr1_2:5524507-5524526 Msa0051430:intron 20.0%
!!! TTAATTGTTCTTGTTTATCT+GGG + chr1_2:5524508-5524527 Msa0051430:intron 20.0%
!!! GAAAATAATGTTTTTGGTTT+AGG + chr1_2:5524857-5524876 Msa0051430:intron 20.0%
!!! TTTTTACTTCTGAATTAACT+TGG - chr1_2:5525174-5525193 None:intergenic 20.0%
!! AAACTATTGCTTAAAATCTA+TGG + chr1_2:5525192-5525211 Msa0051430:intron 20.0%
!!! AGTGAAAAAAATGTTGTTTT+TGG + chr1_2:5525702-5525721 Msa0051430:three_prime_UTR 20.0%
!!! GTGAAAAAAATGTTGTTTTT+GGG + chr1_2:5525703-5525722 Msa0051430:three_prime_UTR 20.0%
!! ATTCCACTACATAAATTAAA+CGG + chr1_2:5525836-5525855 Msa0051430:three_prime_UTR 20.0%
!! TGATATAGTGATTAATATAG+TGG - chr1_2:5525887-5525906 None:intergenic 20.0%
!!! ACATATAGATAATGGTATAT+AGG - chr1_2:5525942-5525961 None:intergenic 20.0%
!! TGATTTGAACATATAGATAA+TGG - chr1_2:5525950-5525969 None:intergenic 20.0%
!! GGAATAGAATTTTCATTCTA+GGG + chr1_2:5521719-5521738 Msa0051430:intron 25.0%
!!! ATTTTCATTCTAGGGTTTTT+AGG + chr1_2:5521727-5521746 Msa0051430:intron 25.0%
!!! TTTTCATTCTAGGGTTTTTA+GGG + chr1_2:5521728-5521747 Msa0051430:intron 25.0%
!!! TTTCTTGTTTTTCGATTTAC+TGG + chr1_2:5521775-5521794 Msa0051430:intron 25.0%
!! CTTGAGTTTCATCTAAATTT+TGG + chr1_2:5521827-5521846 Msa0051430:intron 25.0%
! ACATAGAAGGATAATAACAA+TGG - chr1_2:5522214-5522233 None:intergenic 25.0%
! AAATAATAAGGACACATAGA+AGG - chr1_2:5522227-5522246 None:intergenic 25.0%
! TATGTGTCCTTATTATTTGT+TGG + chr1_2:5522229-5522248 Msa0051430:intron 25.0%
!!! TTATATTTGGGTTGATATGT+TGG + chr1_2:5522343-5522362 Msa0051430:intron 25.0%
!!! TATATTTGGGTTGATATGTT+GGG + chr1_2:5522344-5522363 Msa0051430:intron 25.0%
! GAATTATTTCCTGAAGTATA+TGG + chr1_2:5522502-5522521 Msa0051430:intron 25.0%
! TATAACATGTAACTTAAGTC+GGG - chr1_2:5522578-5522597 None:intergenic 25.0%
! AATCAAACTTATTTGGTCAA+TGG - chr1_2:5522635-5522654 None:intergenic 25.0%
! ATTGACCAAATAAGTTTGAT+TGG + chr1_2:5522634-5522653 Msa0051430:intron 25.0%
! ACTTTCCAATCAAACTTATT+TGG - chr1_2:5522642-5522661 None:intergenic 25.0%
! AAAGCATAACAAGAACATTA+CGG - chr1_2:5522682-5522701 None:intergenic 25.0%
! GAGTTATAAATAACATGGAA+TGG + chr1_2:5522772-5522791 Msa0051430:intron 25.0%
!!! TTAATTCTGTTTTGAAATGG+AGG + chr1_2:5522836-5522855 Msa0051430:intron 25.0%
!!! TAATTCTGTTTTGAAATGGA+GGG + chr1_2:5522837-5522856 Msa0051430:intron 25.0%
!! AACAATTTAAGACAAACTTC+AGG - chr1_2:5522935-5522954 None:intergenic 25.0%
! AATATTGAAACAACAGGAAT+GGG - chr1_2:5523084-5523103 None:intergenic 25.0%
! AAATATTGAAACAACAGGAA+TGG - chr1_2:5523085-5523104 None:intergenic 25.0%
!!! TTCTGAAATATTGAAACAAC+AGG - chr1_2:5523090-5523109 None:intergenic 25.0%
! ACAAATATTTGTAAAGAGGA+AGG - chr1_2:5523173-5523192 None:intergenic 25.0%
!!! TCTTTTGCCATTTTCAAATA+TGG + chr1_2:5523243-5523262 Msa0051430:intron 25.0%
!! TGTTTTATCTTGACTATTTG+TGG + chr1_2:5523722-5523741 Msa0051430:intron 25.0%
!! GTTTTATCTTGACTATTTGT+GGG + chr1_2:5523723-5523742 Msa0051430:intron 25.0%
! TTCCAATCAAACAATCATAT+AGG + chr1_2:5523845-5523864 Msa0051430:intron 25.0%
! TAACTATCTAGTAATGAGAT+GGG + chr1_2:5524168-5524187 Msa0051430:intron 25.0%
!!! AGATTCTTGGTTTTTAATTG+TGG + chr1_2:5524234-5524253 Msa0051430:intron 25.0%
! ACCATGTCTCAATATTAAAA+TGG - chr1_2:5524556-5524575 None:intergenic 25.0%
! ATCTCTTATATTCAAGTATC+TGG - chr1_2:5524660-5524679 None:intergenic 25.0%
! TGCTTAAATTATTCACAATG+CGG + chr1_2:5524881-5524900 Msa0051430:intron 25.0%
!!! ATGTTTGTGCTTTTTACTTA+TGG + chr1_2:5525076-5525095 Msa0051430:intron 25.0%
! TTATGGAAAAAAGTCTTGAT+AGG + chr1_2:5525093-5525112 Msa0051430:intron 25.0%
! GATAGGTATATTGATGTTTA+TGG + chr1_2:5525110-5525129 Msa0051430:intron 25.0%
!!! TTTACCCAGTTTTTTATACA+AGG + chr1_2:5525343-5525362 Msa0051430:intron 25.0%
!!! TTACCCAGTTTTTTATACAA+GGG + chr1_2:5525344-5525363 Msa0051430:intron 25.0%
! ATTACTTGAGAAGAATAAAG+TGG + chr1_2:5525384-5525403 Msa0051430:intron 25.0%
! TTACTTGAGAAGAATAAAGT+GGG + chr1_2:5525385-5525404 Msa0051430:intron 25.0%
! CTGAGGTAATTAAAAAATTC+TGG - chr1_2:5525416-5525435 None:intergenic 25.0%
!!! TTTCTACCATGTTTTTATGT+AGG + chr1_2:5525981-5526000 Msa0051430:three_prime_UTR 25.0%
AAAATCGAGTGAATCGAAAA+CGG - chr1_2:5521656-5521675 None:intergenic 30.0%
TTACACAAGGATAAACAGAA+GGG - chr1_2:5521681-5521700 None:intergenic 30.0%
! TAACGCTTACTTTGTTTGAT+CGG + chr1_2:5521698-5521717 Msa0051430:intron 30.0%
! CGGAATAGAATTTTCATTCT+AGG + chr1_2:5521718-5521737 Msa0051430:intron 30.0%
!! TGTTTTTCGATTTACTGGTT+TGG + chr1_2:5521780-5521799 Msa0051430:intron 30.0%
!!! GTTTTTCGATTTACTGGTTT+GGG + chr1_2:5521781-5521800 Msa0051430:intron 30.0%
!!! TAAGCACTTTTGAGATTGTT+TGG + chr1_2:5521974-5521993 Msa0051430:intron 30.0%
!!! AAGCACTTTTGAGATTGTTT+GGG + chr1_2:5521975-5521994 Msa0051430:intron 30.0%
ATTACGTTGTTTATCCTAAC+AGG + chr1_2:5522188-5522207 Msa0051430:intron 30.0%
CAAACGTCCAACAAATAATA+AGG - chr1_2:5522239-5522258 None:intergenic 30.0%
! TATTTGTTGGACGTTTGAAA+TGG + chr1_2:5522242-5522261 Msa0051430:intron 30.0%
!! CTTTTACATCAAGTTGCTTT+AGG + chr1_2:5522408-5522427 Msa0051430:intron 30.0%
!! CTTGTTATGTTTTTCCTTGT+TGG + chr1_2:5522480-5522499 Msa0051430:intron 30.0%
TTCAGGAAATAATTCCAACA+AGG - chr1_2:5522497-5522516 None:intergenic 30.0%
TATTTGGTCAATGGTCAATA+AGG - chr1_2:5522626-5522645 None:intergenic 30.0%
GAATTAAGTTTATTACAGGC+AGG - chr1_2:5522823-5522842 None:intergenic 30.0%
! TTAGTTCAGTTTTTGAATCG+AGG + chr1_2:5522907-5522926 Msa0051430:intron 30.0%
AACATGTTCTTATGGTATTC+TGG + chr1_2:5523138-5523157 Msa0051430:intron 30.0%
TGGCACAAATATTTGTAAAG+AGG - chr1_2:5523177-5523196 None:intergenic 30.0%
AAATGGGCCATATTTGAAAA+TGG - chr1_2:5523253-5523272 None:intergenic 30.0%
! ATATGGCCCATTTTCAAATA+TGG + chr1_2:5523260-5523279 Msa0051430:intron 30.0%
AGCAAGCCATATTTGAAAAT+GGG - chr1_2:5523269-5523288 None:intergenic 30.0%
TAGCAAGCCATATTTGAAAA+TGG - chr1_2:5523270-5523289 None:intergenic 30.0%
GGGTCACATAATTGTATAAA+AGG + chr1_2:5523688-5523707 Msa0051430:intron 30.0%
CTTCTCGCATACTTAAAAAT+AGG + chr1_2:5523768-5523787 Msa0051430:intron 30.0%
GTCCTATATGATTGTTTGAT+TGG - chr1_2:5523850-5523869 None:intergenic 30.0%
!! GACTATATAGTAGCCATTTT+AGG - chr1_2:5523908-5523927 None:intergenic 30.0%
! GAAGCTTCTTTTCTATGTAT+AGG + chr1_2:5523979-5523998 Msa0051430:intron 30.0%
CATTACTAGATAGTTACCTT+TGG - chr1_2:5524164-5524183 None:intergenic 30.0%
GTAACTATCTAGTAATGAGA+TGG + chr1_2:5524167-5524186 Msa0051430:intron 30.0%
!! GCCATTTTAATATTGAGACA+TGG + chr1_2:5524552-5524571 Msa0051430:intron 30.0%
GATATTTATAGCATGCTTGT+AGG + chr1_2:5524731-5524750 Msa0051430:intron 30.0%
ATGTTTATGGAGAAGTTGAA+TGG + chr1_2:5525123-5525142 Msa0051430:intron 30.0%
!!! AGTTTTTTCTAGTTAGCTGT+TGG + chr1_2:5525272-5525291 Msa0051430:intron 30.0%
TAAAAAACTGGGTAAAAGCT+AGG - chr1_2:5525339-5525358 None:intergenic 30.0%
CTTCCCTTGTATAAAAAACT+GGG - chr1_2:5525350-5525369 None:intergenic 30.0%
ACTTCCCTTGTATAAAAAAC+TGG - chr1_2:5525351-5525370 None:intergenic 30.0%
TCTACTGTAATAATCAACTG+AGG - chr1_2:5525433-5525452 None:intergenic 30.0%
ATTATTACAGTAGACAGTTG+TGG + chr1_2:5525439-5525458 Msa0051430:intron 30.0%
!! ATAAATGCTTGTGGTTCTAA+AGG + chr1_2:5525635-5525654 Msa0051430:three_prime_UTR 30.0%
! TCCTGTGAAAAACATGTTTT+GGG + chr1_2:5525660-5525679 Msa0051430:three_prime_UTR 30.0%
!! TAAAACTTGGTTGTTGGTTT+GGG - chr1_2:5525803-5525822 None:intergenic 30.0%
! ATAAAACTTGGTTGTTGGTT+TGG - chr1_2:5525804-5525823 None:intergenic 30.0%
GCGTCATTGTTCTATTATAT+AGG + chr1_2:5525858-5525877 Msa0051430:three_prime_UTR 30.0%
GGTATATAGGTTATGTAGTA+AGG - chr1_2:5525929-5525948 None:intergenic 30.0%
GTAGTACCTACATAAAAACA+TGG - chr1_2:5525990-5526009 None:intergenic 30.0%
GTTACACAAGGATAAACAGA+AGG - chr1_2:5521682-5521701 None:intergenic 35.0%
AACAAAGTAAGCGTTACACA+AGG - chr1_2:5521694-5521713 None:intergenic 35.0%
ACTTGTTTGAGCTTATCTAC+TGG + chr1_2:5521949-5521968 Msa0051430:intron 35.0%
GATAATAACAATGGCCTGTT+AGG - chr1_2:5522205-5522224 None:intergenic 35.0%
ACTCTTCAACCATATACTTC+AGG - chr1_2:5522514-5522533 None:intergenic 35.0%
!! CATGGAATGGGAGTATTATT+TGG + chr1_2:5522785-5522804 Msa0051430:intron 35.0%
!! TTCATTAGGTTGAACTGCAA+TGG + chr1_2:5522953-5522972 Msa0051430:intron 35.0%
AAAGCCAAAAATCCGACATA+TGG + chr1_2:5523324-5523343 Msa0051430:intron 35.0%
CGCAATAATGCATTCATATC+AGG - chr1_2:5523455-5523474 None:intergenic 35.0%
GAATGCATTATTGCGAAAGT+CGG + chr1_2:5523460-5523479 Msa0051430:intron 35.0%
AATGCATTATTGCGAAAGTC+GGG + chr1_2:5523461-5523480 Msa0051430:intron 35.0%
CATCTTGTCTGAACTGTATT+GGG + chr1_2:5523518-5523537 Msa0051430:intron 35.0%
GATTTATTGCAACCTCGATA+AGG + chr1_2:5523554-5523573 Msa0051430:intron 35.0%
GATAAGGATCCTAGATTTGA+TGG + chr1_2:5523570-5523589 Msa0051430:intron 35.0%
ATCTACTGTCCATCAAATCT+AGG - chr1_2:5523582-5523601 None:intergenic 35.0%
! TGAGAGCATGATTTGATACA+AGG + chr1_2:5523816-5523835 Msa0051430:intron 35.0%
GCTTAAATGGATAATCTGGT+GGG - chr1_2:5524139-5524158 None:intergenic 35.0%
TTATCCATTTAAGCCACCAA+AGG + chr1_2:5524145-5524164 Msa0051430:CDS 35.0%
TACTAGATAGTTACCTTTGG+TGG - chr1_2:5524161-5524180 None:intergenic 35.0%
TTTGACCTTAGCAATACATC+CGG - chr1_2:5524268-5524287 None:intergenic 35.0%
TGTATTGCTAAGGTCAAATG+CGG + chr1_2:5524270-5524289 Msa0051430:intron 35.0%
TTGTTGTCATGATGTAGTTG+AGG + chr1_2:5524308-5524327 Msa0051430:intron 35.0%
AATCCATGTTACCACAATTG+AGG - chr1_2:5524334-5524353 None:intergenic 35.0%
ATATCAAAGCAGAACCTTCA+TGG + chr1_2:5524603-5524622 Msa0051430:intron 35.0%
ATGGTTCATGTCATTGACAT+AGG + chr1_2:5524622-5524641 Msa0051430:intron 35.0%
! ATCTTTTCTCCCTTTTCTTG+AGG + chr1_2:5524790-5524809 Msa0051430:intron 35.0%
TACGATAATATGCCTTGGTT+GGG + chr1_2:5525019-5525038 Msa0051430:intron 35.0%
CAATAAGTTAATCCCAACCA+AGG - chr1_2:5525034-5525053 None:intergenic 35.0%
TTATGGAGAAGTTGAATGGT+AGG + chr1_2:5525127-5525146 Msa0051430:intron 35.0%
TATGGAGAAGTTGAATGGTA+GGG + chr1_2:5525128-5525147 Msa0051430:intron 35.0%
GATTTATCTTGTATTGCTGC+AGG + chr1_2:5525468-5525487 Msa0051430:intron 35.0%
! TTTGTCAGTCTTGTACATGT+GGG - chr1_2:5525560-5525579 None:intergenic 35.0%
TGAACTAGCATAAATGCTTG+TGG + chr1_2:5525626-5525645 Msa0051430:exon 35.0%
! CTCCTGTGAAAAACATGTTT+TGG + chr1_2:5525659-5525678 Msa0051430:three_prime_UTR 35.0%
! TCCCAAAACATGTTTTTCAC+AGG - chr1_2:5525664-5525683 None:intergenic 35.0%
!!! AACATGTTTTGGGATGCAAA+AGG + chr1_2:5525670-5525689 Msa0051430:three_prime_UTR 35.0%
TCACTTAGTCGGATAAAACT+TGG - chr1_2:5525816-5525835 None:intergenic 35.0%
! TGTAGTGGAATTCACTTAGT+CGG - chr1_2:5525827-5525846 None:intergenic 35.0%
! ACGCCGTTTAATTTATGTAG+TGG - chr1_2:5525842-5525861 None:intergenic 35.0%
AGTTCTGTTAGCGAGAGAAA+GGG - chr1_2:5521587-5521606 None:intergenic 40.0%
AAGTTCTGTTAGCGAGAGAA+AGG - chr1_2:5521588-5521607 None:intergenic 40.0%
ACCTTGGAGATGGAATCTTA+GGG - chr1_2:5521615-5521634 None:intergenic 40.0%
AACCTTGGAGATGGAATCTT+AGG - chr1_2:5521616-5521635 None:intergenic 40.0%
GAAGAAATCGAAGCAAACCT+TGG - chr1_2:5521631-5521650 None:intergenic 40.0%
GTTGCTTGTGTTAGAGCTTA+CGG + chr1_2:5521913-5521932 Msa0051430:intron 40.0%
! GTTAGAGCTTACGGTTTGTT+TGG + chr1_2:5521922-5521941 Msa0051430:intron 40.0%
!! TTGGGTTGATATGTTGGGAT+TGG + chr1_2:5522349-5522368 Msa0051430:intron 40.0%
TTTAGGCCTCCAAGTATGTT+GGG + chr1_2:5522425-5522444 Msa0051430:intron 40.0%
ATGCCAAGACAACAAGAACA+GGG - chr1_2:5522455-5522474 None:intergenic 40.0%
TATTACAGGCAGGCAGTAAA+AGG - chr1_2:5522813-5522832 None:intergenic 40.0%
!!! CTGTTTTGAAATGGAGGGAT+AGG + chr1_2:5522842-5522861 Msa0051430:intron 40.0%
! CTCCTTAGTAATGCGTTTTG+AGG - chr1_2:5522979-5522998 None:intergenic 40.0%
ACGCATTACTAAGGAGTTGA+AGG + chr1_2:5522983-5523002 Msa0051430:CDS 40.0%
TTGAAACAACAGGAATGGGT+GGG - chr1_2:5523080-5523099 None:intergenic 40.0%
ATTGAAACAACAGGAATGGG+TGG - chr1_2:5523081-5523100 None:intergenic 40.0%
!! CTTATGGTATTCTGGAGCAT+TGG + chr1_2:5523146-5523165 Msa0051430:intron 40.0%
! TGCATTCATATCAGGCATTG+AGG - chr1_2:5523447-5523466 None:intergenic 40.0%
ATCTCTCCAAATTCCACAGT+AGG - chr1_2:5523493-5523512 None:intergenic 40.0%
TACTGTGGAATTTGGAGAGA+TGG + chr1_2:5523492-5523511 Msa0051430:intron 40.0%
ACTGTGGAATTTGGAGAGAT+GGG + chr1_2:5523493-5523512 Msa0051430:intron 40.0%
GCATCTTGTCTGAACTGTAT+TGG + chr1_2:5523517-5523536 Msa0051430:intron 40.0%
! CAAATCTAGGATCCTTATCG+AGG - chr1_2:5523569-5523588 None:intergenic 40.0%
! TTTTCTCCTCTTACTCTCGA+CGG - chr1_2:5523614-5523633 None:intergenic 40.0%
TGATTCACACGTACTGTTAG+AGG - chr1_2:5523794-5523813 None:intergenic 40.0%
TCTAACAGTACGTGTGAATC+AGG + chr1_2:5523793-5523812 Msa0051430:intron 40.0%
TCTCATGCTCTCACCTAAAA+TGG + chr1_2:5523892-5523911 Msa0051430:intron 40.0%
AAAGAAGCTTCAAGCGTACT+TGG - chr1_2:5523970-5523989 None:intergenic 40.0%
TTGGTGAAGACCTGTTTCAT+TGG + chr1_2:5524045-5524064 Msa0051430:CDS 40.0%
! TAGTAGCTTGCCAATGAAAC+AGG - chr1_2:5524058-5524077 None:intergenic 40.0%
TCATTGGCAAGCTACTATCA+TGG + chr1_2:5524061-5524080 Msa0051430:CDS 40.0%
CATTGGCAAGCTACTATCAT+GGG + chr1_2:5524062-5524081 Msa0051430:CDS 40.0%
ATAATCTGGTGGGAAGTGAA+TGG - chr1_2:5524129-5524148 None:intergenic 40.0%
GGCTTAAATGGATAATCTGG+TGG - chr1_2:5524140-5524159 None:intergenic 40.0%
GGTGGCTTAAATGGATAATC+TGG - chr1_2:5524143-5524162 None:intergenic 40.0%
! GTTACCTTTGGTGGCTTAAA+TGG - chr1_2:5524152-5524171 None:intergenic 40.0%
TTTAATTGTGGTCTGTGTCC+CGG + chr1_2:5524246-5524265 Msa0051430:intron 40.0%
TTGACCTTAGCAATACATCC+GGG - chr1_2:5524267-5524286 None:intergenic 40.0%
AATATGTACTTGGGCTGATG+TGG + chr1_2:5524365-5524384 Msa0051430:intron 40.0%
GGCTGATGTGGATTTAATTG+TGG + chr1_2:5524377-5524396 Msa0051430:intron 40.0%
TTGTGGTCATGTTGTAGTTG+AGG + chr1_2:5524394-5524413 Msa0051430:intron 40.0%
AATCCATGTGACCACAATTG+AGG - chr1_2:5524420-5524439 None:intergenic 40.0%
AATGGCTAAACGCAATGACA+TGG - chr1_2:5524538-5524557 None:intergenic 40.0%
GTCAATGACATGAACCATGA+AGG - chr1_2:5524620-5524639 None:intergenic 40.0%
ATGTCATTGACATAGGCTGA+TGG + chr1_2:5524629-5524648 Msa0051430:intron 40.0%
TGTCATTGACATAGGCTGAT+GGG + chr1_2:5524630-5524649 Msa0051430:intron 40.0%
! TTCTCCCTTTTCTTGAGGAA+CGG + chr1_2:5524795-5524814 Msa0051430:intron 40.0%
AACTCCGTTCCTCAAGAAAA+GGG - chr1_2:5524802-5524821 None:intergenic 40.0%
! ATTCACAATGCGGCTTTTGT+AGG + chr1_2:5524891-5524910 Msa0051430:intron 40.0%
! GTGGAACACTTTTGTTCGAA+AGG - chr1_2:5524920-5524939 None:intergenic 40.0%
ACCCTAACATCAACAGCAAT+GGG + chr1_2:5524938-5524957 Msa0051430:CDS 40.0%
! TCCCATTGCTGTTGATGTTA+GGG - chr1_2:5524942-5524961 None:intergenic 40.0%
! TTGACATTCTGAAAGAGCAG+TGG + chr1_2:5524971-5524990 Msa0051430:CDS 40.0%
! GAAGGTACGATAATATGCCT+TGG + chr1_2:5525014-5525033 Msa0051430:intron 40.0%
GTACGATAATATGCCTTGGT+TGG + chr1_2:5525018-5525037 Msa0051430:intron 40.0%
TTGTACATGTGGGCAATATC+AGG - chr1_2:5525550-5525569 None:intergenic 40.0%
! CTTTGTCAGTCTTGTACATG+TGG - chr1_2:5525561-5525580 None:intergenic 40.0%
! ATATTTCTGAGTCCAAGACC+GGG - chr1_2:5525602-5525621 None:intergenic 40.0%
! CATATTTCTGAGTCCAAGAC+CGG - chr1_2:5525603-5525622 None:intergenic 40.0%
!!! GTTGTTTTTGGGATGCATGT+TGG + chr1_2:5525714-5525733 Msa0051430:three_prime_UTR 40.0%
GTCGGATAAAACTTGGTTGT+TGG - chr1_2:5525809-5525828 None:intergenic 40.0%
ACATGGTAGAAACTCGACTT+AGG - chr1_2:5525973-5525992 None:intergenic 40.0%
ACCCTAAGATTCCATCTCCA+AGG + chr1_2:5521611-5521630 Msa0051430:five_prime_UTR 45.0%
ATCGAAGCAAACCTTGGAGA+TGG - chr1_2:5521625-5521644 None:intergenic 45.0%
CTTTAGGCCTCCAAGTATGT+TGG + chr1_2:5522424-5522443 Msa0051430:intron 45.0%
GATGCCAAGACAACAAGAAC+AGG - chr1_2:5522456-5522475 None:intergenic 45.0%
!! ATGGTTGAAGAGTGCTATCG+AGG + chr1_2:5522521-5522540 Msa0051430:intron 45.0%
AGGCATCAACACACTCTCAT+TGG + chr1_2:5522544-5522563 Msa0051430:intron 45.0%
GGCCTCAAAACGCATTACTA+AGG + chr1_2:5522974-5522993 Msa0051430:CDS 45.0%
GTCATCAGTGTTATCGACAG+CGG + chr1_2:5523301-5523320 Msa0051430:intron 45.0%
! GGCACCATATGTCGGATTTT+TGG - chr1_2:5523331-5523350 None:intergenic 45.0%
CATCACAAAATTGGCCATGG+CGG - chr1_2:5523417-5523436 None:intergenic 45.0%
! GCCATGGCCAATTTTGTGAT+GGG + chr1_2:5523416-5523435 Msa0051430:intron 45.0%
ACCCATCACAAAATTGGCCA+TGG - chr1_2:5523420-5523439 None:intergenic 45.0%
!! ATGGCCAATTTTGTGATGGG+TGG + chr1_2:5523419-5523438 Msa0051430:intron 45.0%
TCAGCACCTACTGTGGAATT+TGG + chr1_2:5523484-5523503 Msa0051430:intron 45.0%
TACAAACCGTCGAGAGTAAG+AGG + chr1_2:5523605-5523624 Msa0051430:intron 45.0%
GAAACAGGTCTTCACCAACA+GGG - chr1_2:5524043-5524062 None:intergenic 45.0%
TGAAACAGGTCTTCACCAAC+AGG - chr1_2:5524044-5524063 None:intergenic 45.0%
AGGAATACACCACCAGCATA+AGG - chr1_2:5524101-5524120 None:intergenic 45.0%
TGTAGTTGAGGCCTCAATTG+TGG + chr1_2:5524320-5524339 Msa0051430:intron 45.0%
AGGCCTCAATTGTGGTAACA+TGG + chr1_2:5524328-5524347 Msa0051430:intron 45.0%
TGTAGTTGAGGCCTCAATTG+TGG + chr1_2:5524320-5524339 Msa0051430:intron 45.0%
CAACTCCGTTCCTCAAGAAA+AGG - chr1_2:5524803-5524822 None:intergenic 45.0%
! CTTTTCTTGAGGAACGGAGT+TGG + chr1_2:5524801-5524820 Msa0051430:intron 45.0%
! CATTGCTGTTGATGTTAGGG+TGG - chr1_2:5524939-5524958 None:intergenic 45.0%
CACCCTAACATCAACAGCAA+TGG + chr1_2:5524937-5524956 Msa0051430:CDS 45.0%
! CTCCCATTGCTGTTGATGTT+AGG - chr1_2:5524943-5524962 None:intergenic 45.0%
TCCTGCTCTTACTGTTTCGA+AGG + chr1_2:5524996-5525015 Msa0051430:CDS 45.0%
ACCTTCGAAACAGTAAGAGC+AGG - chr1_2:5525000-5525019 None:intergenic 45.0%
AACTGGGTAAAAGCTAGGCA+AGG - chr1_2:5525334-5525353 None:intergenic 45.0%
TCCAAACCCAGATGATCCTT+TGG + chr1_2:5525522-5525541 Msa0051430:CDS 45.0%
ACCAAAGGATCATCTGGGTT+TGG - chr1_2:5525526-5525545 None:intergenic 45.0%
!! TTTAAAGAAATATTATATTT+GGG + chr1_2:5522331-5522350 Msa0051430:intron 5.0%
CAAGACAACAAGAACAGGGC+CGG - chr1_2:5522451-5522470 None:intergenic 50.0%
!! GTTGAAGAGTGCTATCGAGG+AGG + chr1_2:5522524-5522543 Msa0051430:intron 50.0%
ATACCAGCACTGCAAGACAC+AGG - chr1_2:5523026-5523045 None:intergenic 50.0%
GAGAGAGAGAGACTGTGCAA+TGG - chr1_2:5523054-5523073 None:intergenic 50.0%
!! CTGCACAAAGTGGCGGATAA+CGG + chr1_2:5523357-5523376 Msa0051430:intron 50.0%
!!! GGATATCAGTGGCGGGTTTT+TGG + chr1_2:5523387-5523406 Msa0051430:intron 50.0%
! CGCCATGGCCAATTTTGTGA+TGG + chr1_2:5523415-5523434 Msa0051430:intron 50.0%
! GGTGCCACCCATCACAAAAT+TGG - chr1_2:5523426-5523445 None:intergenic 50.0%
TATACTCATGCAGGCCCTGT+TGG + chr1_2:5524026-5524045 Msa0051430:intron 50.0%
GCAAGCTACTATCATGGGAC+CGG + chr1_2:5524067-5524086 Msa0051430:CDS 50.0%
GTGGGAAGTGAATGGTCACT+AGG - chr1_2:5524121-5524140 None:intergenic 50.0%
GTGTCCCGGATGTATTGCTA+AGG + chr1_2:5524260-5524279 Msa0051430:intron 50.0%
AAGGTCAAATGCGGCTGATG+TGG + chr1_2:5524279-5524298 Msa0051430:intron 50.0%
AGGCCTCAATTGTGGTCACA+TGG + chr1_2:5524414-5524433 Msa0051430:intron 50.0%
GCAGAGAGCAAATTGACAGC+AGG - chr1_2:5525495-5525514 None:intergenic 50.0%
CAGGCACCAAAGGATCATCT+GGG - chr1_2:5525531-5525550 None:intergenic 50.0%
TCAGGCACCAAAGGATCATC+TGG - chr1_2:5525532-5525551 None:intergenic 50.0%
TGGGCAATATCAGGCACCAA+AGG - chr1_2:5525541-5525560 None:intergenic 50.0%
CCAAGTATGAGACTACTGCC+CGG + chr1_2:5525581-5525600 Msa0051430:CDS 50.0%
AAAGGGAGCGATGCGTTGTG+AGG - chr1_2:5521570-5521589 None:intergenic 55.0%
! CGGCCCTGTTCTTGTTGTCT+TGG + chr1_2:5522449-5522468 Msa0051430:intron 55.0%
CAGCACTGCAAGACACAGGA+GGG - chr1_2:5523022-5523041 None:intergenic 55.0%
! AGGATGGCGGCACCATATGT+CGG - chr1_2:5523339-5523358 None:intergenic 55.0%
! ATCCGCCACTTTGTGCAGGA+TGG - chr1_2:5523355-5523374 None:intergenic 55.0%
! CGTTATCCGCCACTTTGTGC+AGG - chr1_2:5523359-5523378 None:intergenic 55.0%
!! AAAGTGGCGGATAACGGCCA+TGG + chr1_2:5523363-5523382 Msa0051430:intron 55.0%
!!! GGGTTTTTGGCTTTCCGCCA+TGG + chr1_2:5523400-5523419 Msa0051430:intron 55.0%
CCAGCATAAGGACTGTCTGC+CGG - chr1_2:5524089-5524108 None:intergenic 55.0%
GCAGACAGTCCTTATGCTGG+TGG + chr1_2:5524089-5524108 Msa0051430:CDS 55.0%
CCGGGCAGTAGTCTCATACT+TGG - chr1_2:5525584-5525603 None:intergenic 55.0%
ATGAGACTACTGCCCGGTCT+TGG + chr1_2:5525587-5525606 Msa0051430:CDS 55.0%
GGCCTCCAAGTATGTTGGGC+CGG + chr1_2:5522429-5522448 Msa0051430:intron 60.0%
CCAGCACTGCAAGACACAGG+AGG - chr1_2:5523023-5523042 None:intergenic 60.0%
CCTCCTGTGTCTTGCAGTGC+TGG + chr1_2:5523020-5523039 Msa0051430:CDS 60.0%
TGCCGCCATCCTGCACAAAG+TGG + chr1_2:5523347-5523366 Msa0051430:intron 60.0%
! CGCCACTTTGTGCAGGATGG+CGG - chr1_2:5523352-5523371 None:intergenic 60.0%
CGCCATCCTGCACAAAGTGG+CGG + chr1_2:5523350-5523369 Msa0051430:intron 60.0%
!! ACGGCCATGGCGGATATCAG+TGG + chr1_2:5523376-5523395 Msa0051430:intron 60.0%
!! GCCATGGCGGATATCAGTGG+CGG + chr1_2:5523379-5523398 Msa0051430:intron 60.0%
!! CCATGGCGGATATCAGTGGC+GGG + chr1_2:5523380-5523399 Msa0051430:intron 60.0%
AGTCGGGTCAGCACCTACTG+TGG + chr1_2:5523477-5523496 Msa0051430:intron 60.0%
CCGGCAGACAGTCCTTATGC+TGG + chr1_2:5524086-5524105 Msa0051430:CDS 60.0%
GGCCGGCCCAACATACTTGG+AGG - chr1_2:5522434-5522453 None:intergenic 65.0%
CAGGGCCGGCCCAACATACT+TGG - chr1_2:5522437-5522456 None:intergenic 65.0%
!! GTGGCGGATAACGGCCATGG+CGG + chr1_2:5523366-5523385 Msa0051430:intron 65.0%
CCCGCCACTGATATCCGCCA+TGG - chr1_2:5523383-5523402 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5521551 5526040 5521551 ID=Msa0051430;Name=Msa0051430
chr1_2 mRNA 5521551 5526040 5521551 ID=Msa0051430-mRNA-1;Parent=Msa0051430;Name=Msa0051430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=93|1|1|1|0.75|0.6|5|407|148
chr1_2 exon 5521551 5521632 5521551 ID=Msa0051430-mRNA-1:exon:1652;Parent=Msa0051430-mRNA-1
chr1_2 exon 5522961 5523041 5522961 ID=Msa0051430-mRNA-1:exon:1653;Parent=Msa0051430-mRNA-1
chr1_2 exon 5524039 5524166 5524039 ID=Msa0051430-mRNA-1:exon:1654;Parent=Msa0051430-mRNA-1
chr1_2 exon 5524913 5525017 5524913 ID=Msa0051430-mRNA-1:exon:1655;Parent=Msa0051430-mRNA-1
chr1_2 exon 5525490 5526040 5525490 ID=Msa0051430-mRNA-1:exon:1656;Parent=Msa0051430-mRNA-1
chr1_2 five_prime_UTR 5521551 5521632 5521551 ID=Msa0051430-mRNA-1:five_prime_utr;Parent=Msa0051430-mRNA-1
chr1_2 five_prime_UTR 5522961 5522971 5522961 ID=Msa0051430-mRNA-1:five_prime_utr;Parent=Msa0051430-mRNA-1
chr1_2 CDS 5522972 5523041 5522972 ID=Msa0051430-mRNA-1:cds;Parent=Msa0051430-mRNA-1
chr1_2 CDS 5524039 5524166 5524039 ID=Msa0051430-mRNA-1:cds;Parent=Msa0051430-mRNA-1
chr1_2 CDS 5524913 5525017 5524913 ID=Msa0051430-mRNA-1:cds;Parent=Msa0051430-mRNA-1
chr1_2 CDS 5525490 5525633 5525490 ID=Msa0051430-mRNA-1:cds;Parent=Msa0051430-mRNA-1
chr1_2 three_prime_UTR 5525634 5526040 5525634 ID=Msa0051430-mRNA-1:three_prime_utr;Parent=Msa0051430-mRNA-1
Gene Sequence

>Msa0051430

ATGGCCTCAAAACGCATTACTAAGGAGTTGAAGGACTTGCAGAAAGACCCTCCTGTGTCTTGCAGTGCTGGCCCTGTTGGTGAAGACCTGTTTCATTGGCAAGCTACTATCATGGGACCGGCAGACAGTCCTTATGCTGGTGGTGTATTCCTAGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGGTTTCCTTTCGAACAAAAGTGTTCCACCCTAACATCAACAGCAATGGGAGTATCTGTCTTGACATTCTGAAAGAGCAGTGGAGTCCTGCTCTTACTGTTTCGAAGGTCCTGCTGTCAATTTGCTCTCTGCTGACAGATCCAAACCCAGATGATCCTTTGGTGCCTGATATTGCCCACATGTACAAGACTGACAAAGCCAAGTATGAGACTACTGCCCGGTCTTGGACTCAGAAATATGCGATGAACTAG
Protein sequence

>Msa0051430

MASKRITKELKDLQKDPPVSCSAGPVGEDLFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPDIAHMYKTDKAKYETTARSWTQKYAMN*